https://launchpad.net/ubuntu/+source/plastimatch/1.9.3+dfsg.1-5/+build/24236978 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-057 5.4.0-122-generic #138-Ubuntu SMP Wed Jun 22 15:00:31 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_217~578~ubuntu20.04.1 python3-lpbuildd_217~578~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 1 Aug 23:17:11 ntpdate[1913]: adjust time server 10.131.248.1 offset 0.002405 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24236978 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24236978 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24236978 Starting target for build PACKAGEBUILD-24236978 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24236978 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24236978 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24236978 Updating target for build PACKAGEBUILD-24236978 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1403 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5773 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 Packages [185 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [53.6 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe amd64 Packages [504 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [231 kB] Fetched 23.7 MB in 2s (9549 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-12 g++-12 gcc-12 libasan8 libfdisk1 libgcc-12-dev libgprofng0 libstdc++-12-dev libtsan2 sgml-base util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++ g++-11 gcc gcc-11 gcc-11-base gcc-12-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libperl5.34 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.34 pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils zlib1g 106 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 308 MB of archives. After this operation, 706 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcrypt-dev amd64 1:4.4.28-2 [112 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcrypt1 amd64 1:4.4.28-2 [80.0 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu2 [73.2 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libatomic1 amd64 12.1.0-7ubuntu1 [10.4 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libubsan1 amd64 12.1.0-7ubuntu1 [969 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libquadmath0 amd64 12.1.0-7ubuntu1 [152 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 liblsan0 amd64 12.1.0-7ubuntu1 [1060 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libitm1 amd64 12.1.0-7ubuntu1 [29.4 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgomp1 amd64 12.1.0-7ubuntu1 [125 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 gcc-12-base amd64 12.1.0-7ubuntu1 [19.3 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgcc-s1 amd64 12.1.0-7ubuntu1 [54.2 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libcc1-0 amd64 12.1.0-7ubuntu1 [46.4 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libstdc++6 amd64 12.1.0-7ubuntu1 [679 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfdisk1 amd64 2.38-4ubuntu1 [144 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 251.2-2ubuntu2 [11.2 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-3ubuntu1 [37.9 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl3 amd64 3.0.4-1ubuntu1 [1898 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 251.2-2ubuntu2 [4742 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 251.2-2ubuntu2 [326 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 251.2-2ubuntu2 [81.3 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu10 [57.5 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libapt-pkg6.0 amd64 2.5.2 [903 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.9ubuntu1 [1334 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libperl5.34 amd64 5.34.0-5ubuntu1 [4691 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 perl amd64 5.34.0-5ubuntu1 [231 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 perl-base amd64 5.34.0-5ubuntu1 [1739 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 perl-modules-5.34 all 5.34.0-5ubuntu1 [2952 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.10 [721 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.64 [38.7 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 sgml-base all 1.30 [12.5 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libidn2-0 amd64 2.3.3-1 [62.9 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgnutls30 amd64 3.7.7-2ubuntu1 [981 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpgv amd64 2.2.27-3ubuntu3 [135 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 apt amd64 2.5.2 [1377 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.64 [5536 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.8.3-1 [15.7 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgssapi-krb5-2 amd64 1.20-1 [142 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkrb5-3 amd64 1.20-1 [346 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkrb5support0 amd64 1.20-1 [31.2 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 libk5crypto3 amd64 1.20-1 [81.2 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libsqlite3-0 amd64 3.39.2-1 [654 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 openssl amd64 3.0.4-1ubuntu1 [1176 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 libctf0 amd64 2.38.90.20220713-2ubuntu1 [104 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.90.20220713-2ubuntu1 [107 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.90.20220713-2ubuntu1 [963 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbinutils amd64 2.38.90.20220713-2ubuntu1 [654 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 binutils amd64 2.38.90.20220713-2ubuntu1 [3300 B] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 binutils-common amd64 2.38.90.20220713-2ubuntu1 [225 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.90.20220713-2ubuntu1 [2552 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main amd64 libisl23 amd64 0.25-1 [740 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 cpp-12 amd64 12.1.0-7ubuntu1 [63.4 MB] Get:89 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libasan8 amd64 12.1.0-7ubuntu1 [2439 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtsan2 amd64 12.1.0-7ubuntu1 [2456 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgcc-12-dev amd64 12.1.0-7ubuntu1 [2577 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 gcc-12 amd64 12.1.0-7ubuntu1 [72.5 MB] Get:93 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libstdc++-12-dev amd64 12.1.0-7ubuntu1 [2159 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 g++-12 amd64 12.1.0-7ubuntu1 [68.4 MB] Get:95 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 g++ amd64 4:12.1.0-3ubuntu1 [1414 B] Get:96 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 gcc amd64 4:12.1.0-3ubuntu1 [5112 B] Get:97 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 cpp amd64 4:12.1.0-3ubuntu1 [27.4 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-5ubuntu1 [11.3 MB] Get:99 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-5ubuntu1 [2079 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-5ubuntu1 [2264 kB] Get:101 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-5ubuntu1 [20.0 MB] Get:102 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-5ubuntu1 [2486 kB] Get:103 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-5ubuntu1 [2240 kB] Get:104 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-5ubuntu1 [9911 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-5ubuntu1 [20.4 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.9ubuntu1 [1070 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.9ubuntu1 [237 kB] Get:108 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 32 [12.2 kB] Get:109 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main amd64 libassuan0 amd64 2.5.5-4 [37.2 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-2ubuntu1 [34.5 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpg amd64 2.2.27-3ubuntu3 [512 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpgconf amd64 2.2.27-3ubuntu3 [91.7 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 gpg-agent amd64 2.2.27-3ubuntu3 [205 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 linux-libc-dev amd64 5.19.0-13.13 [1294 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 308 MB in 7s (41.9 MB/s) (Reading database ... 13449 files and directories currently installed.) 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Setting up gpg (2.2.27-3ubuntu3) ... Setting up binutils-x86-64-linux-gnu (2.38.90.20220713-2ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu3) ... Setting up libstdc++-12-dev:amd64 (12.1.0-7ubuntu1) ... Setting up binutils (2.38.90.20220713-2ubuntu1) ... Setting up dpkg-dev (1.21.9ubuntu1) ... Setting up gcc-12 (12.1.0-7ubuntu1) ... Setting up libstdc++-11-dev:amd64 (11.3.0-5ubuntu1) ... Setting up gcc-11 (11.3.0-5ubuntu1) ... Setting up g++-12 (12.1.0-7ubuntu1) ... Setting up g++-11 (11.3.0-5ubuntu1) ... Setting up gcc (4:12.1.0-3ubuntu1) ... Setting up g++ (4:12.1.0-3ubuntu1) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for debianutils (5.7-0.2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24236978 amd64 kinetic-proposed -c chroot:build-PACKAGEBUILD-24236978 --arch=amd64 --dist=kinetic-proposed --nolog -A plastimatch_1.9.3+dfsg.1-5.dsc Initiating build PACKAGEBUILD-24236978 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-122-generic #138-Ubuntu SMP Wed Jun 22 15:00:31 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-057.buildd +==============================================================================+ | plastimatch 1.9.3+dfsg.1-5 (amd64) Mon, 01 Aug 2022 23:17:41 +0000 | +==============================================================================+ Package: plastimatch Version: 1.9.3+dfsg.1-5 Source Version: 1.9.3+dfsg.1-5 Distribution: kinetic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24236978/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/plastimatch-ZxEYYq/resolver-egfEaI' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- plastimatch_1.9.3+dfsg.1-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/plastimatch-ZxEYYq/plastimatch-1.9.3+dfsg.1' with '<>' I: NOTICE: Log filtering will replace 'build/plastimatch-ZxEYYq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libblas-dev, libcharls-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm-dev, libinsighttoolkit5-dev (>= 5.2.1-4), liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, libblas-dev, libcharls-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm-dev, libinsighttoolkit5-dev (>= 5.2.1-4), liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [464 B] Get:5 copy:/<>/apt_archive ./ Packages [548 B] Fetched 1969 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas-dev libblas3 libbrotli1 libbsd0 libcharls-dev libcharls2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdcmtk-dev libdcmtk17 libdebhelper-perl libdeflate-dev libdeflate0 libdlib-data libdlib-dev libdlib19.1 libdouble-conversion-dev libdouble-conversion3 libdw1 libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgdcm-dev libgdcm3.0 libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu-dev libicu71 libinsighttoolkit5-dev libinsighttoolkit5.2 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp25 liblapack-dev liblapack3 libldap-2.5-0 liblerc-dev liblerc3 liblzma-dev libmagic-mgc libmagic1 libmd0 libminc-dev libminc2-5.2.0 libnetcdf-dev libnetcdf19 libnghttp2-14 libnifti-dev libnifti2-2 libnifti2-dev libnifticdf-dev libnifticdf2 libniftiio-dev libniftiio2 libopencv-core-dev libopencv-core406 libopenjp2-7 libpipeline1 libpng-dev libpsl5 libpthread-stubs0-dev librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsocket++1 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsz2 libtbb-dev libtbb12 libtbbmalloc2 libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libuv1 libwebp7 libwrap0 libwrap0-dev libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxml2-dev libznz-dev libznz3 m4 man-db po-debconf pybind11-dev uuid-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip liblapack-doc libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config dcmtk-doc libfftw3-doc libhdf5-doc icu-doc insighttoolkit5-examples liblzma-doc netcdf-bin netcdf-doc sqlite3-doc libssl-doc libtbb-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc m4-doc apparmor less www-browser libmail-box-perl pybind11-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common pkg-config libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl libeigen3-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas-dev libblas3 libbrotli1 libbsd0 libcharls-dev libcharls2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdcmtk-dev libdcmtk17 libdebhelper-perl libdeflate-dev libdeflate0 libdlib-data libdlib-dev libdlib19.1 libdouble-conversion-dev libdouble-conversion3 libdw1 libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgdcm-dev libgdcm3.0 libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu-dev libicu71 libinsighttoolkit5-dev libinsighttoolkit5.2 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp25 liblapack-dev liblapack3 libldap-2.5-0 liblerc-dev liblerc3 liblzma-dev libmagic-mgc libmagic1 libmd0 libminc-dev libminc2-5.2.0 libnetcdf-dev libnetcdf19 libnghttp2-14 libnifti-dev libnifti2-2 libnifti2-dev libnifticdf-dev libnifticdf2 libniftiio-dev libniftiio2 libopencv-core-dev libopencv-core406 libopenjp2-7 libpipeline1 libpng-dev libpsl5 libpthread-stubs0-dev librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsocket++1 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsz2 libtbb-dev libtbb12 libtbbmalloc2 libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libuv1 libwebp7 libwrap0 libwrap0-dev libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxml2-dev libznz-dev libznz3 m4 man-db po-debconf pybind11-dev sbuild-build-depends-main-dummy uuid-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 163 MB of archives. After this operation, 538 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [766 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmd0 amd64 1.0.4-2 [22.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbsd0 amd64 0.11.6-1 [44.5 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libelf1 amd64 0.187-1 [51.3 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libexpat1 amd64 2.4.8-1 [90.6 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu71 amd64 71.1-3 [10.6 MB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2 amd64 2.9.14+dfsg-1 [756 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 file amd64 1:5.41-4 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[2264 B] Get:72 http://ftpmaster.internal/ubuntu kinetic/universe amd64 liblerc3 amd64 3.0+ds-1ubuntu1 [128 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libwebp7 amd64 1.2.2-2 [206 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtiff5 amd64 4.4.0-3 [188 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libwrap0 amd64 7.6.q-31build2 [47.9 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdcmtk17 amd64 3.6.7-5 [5391 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu10 [162 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng-dev amd64 1.6.37-5 [186 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl-dev amd64 3.0.4-1ubuntu1 [2376 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjbig-dev amd64 2.1-3.1build3 [27.3 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-turbo8-dev amd64 2.1.2-0ubuntu1 [257 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg8-dev amd64 8c-2ubuntu10 [1476 B] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-dev amd64 8c-2ubuntu10 [1472 B] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma-dev amd64 5.2.5-2.1 [157 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtiffxx5 amd64 4.4.0-3 [5744 B] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdeflate-dev amd64 1.12-1 [58.9 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/universe amd64 liblerc-dev amd64 3.0+ds-1ubuntu1 [125 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libtiff-dev amd64 4.4.0-3 [320 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main amd64 libwrap0-dev amd64 7.6.q-31build2 [23.8 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu-dev amd64 71.1-3 [11.6 MB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2-dev amd64 2.9.14+dfsg-1 [789 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdcmtk-dev amd64 3.6.7-5 [1024 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdlib-data all 19.24+dfsg-1 [64.3 MB] Get:94 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgfortran5 amd64 12.1.0-7ubuntu1 [877 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblapack3 amd64 3.10.1-2 [2492 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdlib19.1 amd64 19.24+dfsg-1 [3707 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libtbbmalloc2 amd64 2021.5.0-12 [48.1 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libtbb12 amd64 2021.5.0-12 [82.0 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic-proposed/universe amd64 libopencv-core406 amd64 4.6.0+dfsg-4build1 [1170 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libtbb-dev amd64 2021.5.0-12 [191 kB] Get:101 http://ftpmaster.internal/ubuntu kinetic-proposed/universe amd64 libopencv-core-dev amd64 4.6.0+dfsg-4build1 [1975 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libsqlite3-dev amd64 3.39.2-1 [862 kB] Get:103 http://ftpmaster.internal/ubuntu kinetic/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:104 http://ftpmaster.internal/ubuntu kinetic/main amd64 x11proto-dev all 2022.1-1 [605 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxau-dev amd64 1:1.0.9-1build5 [9724 B] Get:106 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu5 [26.5 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:108 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpthread-stubs0-dev amd64 0.4-1build2 [5516 B] Get:109 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb1-dev amd64 1.14-3ubuntu3 [86.5 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libx11-dev amd64 2:1.8.1-1 [734 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic-proposed/universe amd64 pybind11-dev all 2.10.0-2 [148 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdlib-dev amd64 19.24+dfsg-1 [2097 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdouble-conversion3 amd64 3.2.0-1 [39.4 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 libexpat1-dev amd64 2.4.8-1 [147 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfftw3-double3 amd64 3.3.8-2ubuntu8 [770 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu8 [335 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu8 [614 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu8 [800 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu8 [35.5 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu8 [2101 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main amd64 libopenjp2-7 amd64 2.5.0-1 [171 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libsocket++1 amd64 1.12.13+git20131030.5d039ba-1 [84.3 kB] Get:123 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgdcm3.0 amd64 3.0.13-2 [1961 kB] Get:124 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgdcm-dev amd64 3.0.13-2 [267 kB] Get:125 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libsz2 amd64 1.0.6-1 [5354 B] Get:126 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-103-1 amd64 1.10.7+repack-4ubuntu2 [1295 kB] Get:127 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-cpp-103-1 amd64 1.10.7+repack-4ubuntu2 [129 kB] Get:128 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-fortran-102 amd64 1.10.7+repack-4ubuntu2 [90.9 kB] Get:129 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-hl-100 amd64 1.10.7+repack-4ubuntu2 [59.1 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.7+repack-4ubuntu2 [33.8 kB] Get:131 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.7+repack-4ubuntu2 [10.6 kB] Get:132 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libaec-dev amd64 1.0.6-1 [17.9 kB] Get:133 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-dev amd64 1.10.7+repack-4ubuntu2 [2684 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libnetcdf19 amd64 1:4.9.0-3 [458 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libminc2-5.2.0 amd64 2.4.03-5 [227 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libinsighttoolkit5.2 amd64 5.2.1-5 [5837 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdouble-conversion-dev amd64 3.2.0-1 [60.0 kB] Get:138 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libznz3 amd64 3.0.1-9 [7704 B] Get:139 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libnifti2-2 amd64 3.0.1-9 [74.6 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libnifticdf2 amd64 3.0.1-9 [52.4 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libnifticdf-dev amd64 3.0.1-9 [60.7 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libniftiio2 amd64 3.0.1-9 [56.0 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libniftiio-dev amd64 3.0.1-9 [68.2 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libznz-dev amd64 3.0.1-9 [5830 B] Get:145 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libnifti2-dev amd64 3.0.1-9 [97.3 kB] Get:146 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libnifti-dev all 3.0.1-9 [4012 B] Get:147 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libnetcdf-dev amd64 1:4.9.0-3 [51.1 kB] Get:148 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libminc-dev amd64 2.4.03-5 [56.3 kB] Get:149 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libinsighttoolkit5-dev amd64 5.2.1-5 [3081 kB] Get:150 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblapack-dev amd64 3.10.1-2 [4766 kB] Get:151 http://ftpmaster.internal/ubuntu kinetic/main amd64 uuid-dev amd64 2.38-4ubuntu1 [32.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 163 MB in 1s (113 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... 14699 files and directories currently installed.) Preparing to unpack .../000-libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../001-libbsd0_0.11.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.6-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../002-libelf1_0.187-1_amd64.deb ... Unpacking libelf1:amd64 (0.187-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../003-libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package libicu71:amd64. Preparing to unpack .../004-libicu71_71.1-3_amd64.deb ... Unpacking libicu71:amd64 (71.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../005-libxml2_2.9.14+dfsg-1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1) ... Selecting previously unselected package bsdextrautils. 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Setting up libgfortran5:amd64 (12.1.0-7ubuntu1) ... Setting up libdouble-conversion-dev:amd64 (3.2.0-1) ... Setting up libwebp7:amd64 (1.2.2-2) ... Setting up liblzma-dev:amd64 (5.2.5-2.1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu10) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up librhash0:amd64 (1.4.2-1ubuntu1) ... Setting up libwrap0-dev:amd64 (7.6.q-31build2) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up libznz3:amd64 (3.0.1-9) ... Setting up libopenjp2-7:amd64 (2.5.0-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cmake-data (3.23.3-1ubuntu1) ... Setting up libtbb-dev:amd64 (2021.5.0-12) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up libdeflate-dev:amd64 (1.12-1) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libicu-dev:amd64 (71.1-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up libdlib-data (19.24+dfsg-1) ... Setting up libblas-dev:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.6-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu10) ... Setting up libopencv-core406:amd64 (4.6.0+dfsg-4build1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libcharls-dev:amd64 (2.3.4-1) ... Setting up libdw1:amd64 (0.187-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.2-0ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu3) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up libarchive13:amd64 (3.6.0-1ubuntu1) ... Setting up libfftw3-bin (3.3.8-2ubuntu8) ... Setting up libdlib19.1:amd64 (19.24+dfsg-1) ... Setting up libpng-dev:amd64 (1.6.37-5) ... Setting up libaec-dev:amd64 (1.0.6-1) ... Setting up libjbig-dev:amd64 (2.1-3.1build3) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libniftiio2:amd64 (3.0.1-9) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml2-dev:amd64 (2.9.14+dfsg-1) ... Setting up libgdcm3.0:amd64 (3.0.13-2) ... Setting up libznz-dev:amd64 (3.0.1-9) ... Setting up libnifti2-2:amd64 (3.0.1-9) ... Setting up liblapack-dev:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up libopencv-core-dev:amd64 (4.6.0+dfsg-4build1) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:amd64 (7.84.0-2ubuntu1) ... Setting up libx11-6:amd64 (2:1.8.1-1) ... Setting up libtiff5:amd64 (4.4.0-3) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu10) ... Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu8) ... Setting up libtiffxx5:amd64 (4.4.0-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgdcm-dev (3.0.13-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libniftiio-dev:amd64 (3.0.1-9) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu10) ... Setting up libdcmtk17:amd64 (3.6.7-5) ... Setting up libcurl3-gnutls:amd64 (7.84.0-2ubuntu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libtiff-dev:amd64 (4.4.0-3) ... Setting up libcurl4-openssl-dev:amd64 (7.84.0-2ubuntu1) ... Setting up libhdf5-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Setting up cmake (3.23.3-1ubuntu1) ... Setting up libnifti2-dev (3.0.1-9) ... Setting up libnifti-dev (3.0.1-9) ... Setting up libhdf5-hl-100:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libdcmtk-dev (3.6.7-5) ... Setting up debhelper (13.8ubuntu1) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-fortran-102:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libnetcdf19:amd64 (1:4.9.0-3) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libminc2-5.2.0:amd64 (2.4.03-5) ... Setting up libhdf5-dev (1.10.7+repack-4ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.9.0-3) ... Setting up libminc-dev:amd64 (2.4.03-5) ... Setting up libinsighttoolkit5.2 (5.2.1-5) ... Setting up libinsighttoolkit5-dev (5.2.1-5) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for sgml-base (1.30) ... Setting up x11proto-dev (2022.1-1) ... Setting up libxau-dev:amd64 (1:1.0.9-1build5) ... Setting up libxdmcp-dev:amd64 (1:1.1.3-0ubuntu5) ... Setting up libxcb1-dev:amd64 (1.14-3ubuntu3) ... Setting up libx11-dev:amd64 (2:1.8.1-1) ... Setting up libdlib-dev:amd64 (19.24+dfsg-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-122-generic #138-Ubuntu SMP Wed Jun 22 15:00:31 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.90.20220713-2ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-7ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-12_12.1.0-7ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-7ubuntu1 libstdc++6_12.1.0-7ubuntu1 linux-libc-dev_5.19.0-13.13 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.90.20220713-2ubuntu1 binutils-common_2.38.90.20220713-2ubuntu1 binutils-x86-64-linux-gnu_2.38.90.20220713-2ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 cmake_3.23.3-1ubuntu1 cmake-data_3.23.3-1ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:12.1.0-3ubuntu1 cpp-11_11.3.0-5ubuntu1 cpp-12_12.1.0-7ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.8ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-5 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 emacsen-common_3.0.4 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:12.1.0-3ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-7ubuntu1 gcc_4:12.1.0-3ubuntu1 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readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.2-2ubuntu2 systemd-sysv_251.2-2ubuntu2 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 uuid-dev_2.38-4ubuntu1 x11proto-dev_2022.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu10 zlib1g-dev_1:1.2.11.dfsg-2ubuntu10 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plastimatch Binary: plastimatch Architecture: any Version: 1.9.3+dfsg.1-5 Maintainer: Debian Med Packaging Team Uploaders: Gregory C. Sharp , Andreas Tille Homepage: https://plastimatch.org Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plastimatch Vcs-Git: https://salsa.debian.org/med-team/plastimatch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libblas-dev, libcharls-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm-dev, libinsighttoolkit5-dev (>= 5.2.1-4), liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev, debhelper Package-List: plastimatch deb science optional arch=any Checksums-Sha1: 43677a4efd23331b2eb32d010591f544a8e203bb 35154040 plastimatch_1.9.3+dfsg.1.orig-debian-tests-data.tar.xz cda55175a63bd118e7e516630a91cf85f004f6ed 1381244 plastimatch_1.9.3+dfsg.1.orig.tar.xz e2b792ac799cd62c8ffb247a3d745d708476f16c 10688 plastimatch_1.9.3+dfsg.1-5.debian.tar.xz Checksums-Sha256: d05d5c050d5bbe4236fc8fb4539ac3e84a9acaa299bac14acb7ef3728cd34936 35154040 plastimatch_1.9.3+dfsg.1.orig-debian-tests-data.tar.xz 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applying cxx17.patch dpkg-source: info: applying gcc-11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24236978 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24236978 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24236978 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.9.3+dfsg.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON .. -- The C compiler identification is GNU 12.1.0 -- The CXX compiler identification is GNU 12.1.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test DCMTK_HAS_EC_INVALIDVALUE -- Performing Test DCMTK_HAS_EC_INVALIDVALUE - Success -- DCMTK version 3.6.7 found. -- Etags targets added. -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could NOT find libLBFGS (missing: libLBFGS_LIBRARY libLBFGS_INCLUDE_DIR) -- Could NOT find nlopt (missing: nlopt_LIBRARY nlopt_INCLUDE_DIR) -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - not found -- Looking for CL_VERSION_2_1 -- Looking for CL_VERSION_2_1 - not found -- Looking for CL_VERSION_2_0 -- Looking for CL_VERSION_2_0 - not found -- Looking for CL_VERSION_1_2 -- Looking for CL_VERSION_1_2 - not found -- Looking for CL_VERSION_1_1 -- Looking for CL_VERSION_1_1 - not found -- Looking for CL_VERSION_1_0 -- Looking for CL_VERSION_1_0 - not found -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) -- Check for compiler OpenMP support... -- OpenMP flags "-fopenmp", OpenMP libraries "" -- SSE2_FLAGS "-msse2 -mfpmath=sse" -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) -- CUDA Not found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Looking for wxWidgets - not found. -- Looking for Matlab - not found. -- Looking for Octave - not found. -- Plastimatch version is 1.9.3 -- The imported target "vtkgdcm" references the file "/usr/lib/x86_64-linux-gnu/libvtkgdcm.so.3.0.13" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmsharpglue" references the file "/usr/lib/cli/vtkgdcm-sharp-3.0/libvtkgdcmsharpglue.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmJava" references the file "/usr/lib/x86_64-linux-gnu/jni/libvtkgdcmJava.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPython" references the file "/usr/lib/python3/dist-packages/vtkgdcmPython.cpython-310-x86_64-linux-gnu.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPythonD" references the file "/usr/lib/x86_64-linux-gnu/libvtkgdcmPythonD.so.3.0.13" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdump" references the file "/usr/bin/gdcmdump" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdiff" references the file "/usr/bin/gdcmdiff" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmraw" references the file "/usr/bin/gdcmraw" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscanner" references the file "/usr/bin/gdcmscanner" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmanon" references the file "/usr/bin/gdcmanon" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmclean" references the file "/usr/bin/gdcmclean" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmgendir" references the file "/usr/bin/gdcmgendir" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmimg" references the file "/usr/bin/gdcmimg" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmconv" references the file "/usr/bin/gdcmconv" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmtar" references the file "/usr/bin/gdcmtar" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcminfo" references the file "/usr/bin/gdcminfo" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscu" references the file "/usr/bin/gdcmscu" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmxml" references the file "/usr/bin/gdcmxml" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpap3" references the file "/usr/bin/gdcmpap3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpdf" references the file "/usr/bin/gdcmpdf" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: CXX C -- ITK_VERSION = 5.2.1 found -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h - not found -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h - not found -- ITK_BASE = /usr -- Looking for Qt4 - not found -- Looking for Qt5 - not found -- Could NOT find yaml (missing: yaml_LIBRARIES yaml_INCLUDE_DIR) -- Machine is 64-bit -- Checking host processor: x86_64 -- Checking target processor: x86_64 -- Checking epsilon: 2.22045E-16 2.22045E-16 2.22045E-16 -- Checking sign of char: char is signed -- Appending /<>/libs/itk-5.1.0 -- Not appending /<>/libs/itk-5.1.2 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libs/liblbfgs-1.9 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libs/specfun /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libs/specfun /<>/obj-x86_64-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libs/devillard /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libs/devillard /<>/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libs/inih-r29 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libs/inih-r29 /<>/obj-x86_64-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build [ 0%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o [ 0%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o -MF CMakeFiles/specfun.dir/mpbdv.c.o.d -o CMakeFiles/specfun.dir/mpbdv.c.o -c /<>/libs/specfun/mpbdv.c cd /<>/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++17 -MD -MT libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o -MF CMakeFiles/devillard.dir/wirth.cpp.o.d -o CMakeFiles/devillard.dir/wirth.cpp.o -c /<>/libs/devillard/wirth.cpp [ 0%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o cd /<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/<>/libs/liblbfgs-1.9/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -MF CMakeFiles/lbfgs.dir/lib/lbfgs.c.o.d -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /<>/libs/liblbfgs-1.9/lib/lbfgs.c /<>/libs/devillard/wirth.cpp: In function ‘elem_type kth_smallest(elem_type*, int, int)’: /<>/libs/devillard/wirth.cpp:31:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 31 | register int i,j,l,m ; | ^ /<>/libs/devillard/wirth.cpp:31:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 31 | register int i,j,l,m ; | ^ /<>/libs/devillard/wirth.cpp:31:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 31 | register int i,j,l,m ; | ^ /<>/libs/devillard/wirth.cpp:31:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 31 | register int i,j,l,m ; | ^ /<>/libs/devillard/wirth.cpp:32:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 32 | register elem_type x ; | ^ /<>/libs/devillard/wirth.cpp:8:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 8 | #define ELEM_SWAP(a,b) { register elem_type t=(a);(a)=(b);(b)=t; } | ^ /<>/libs/devillard/wirth.cpp:43:17: note: in expansion of macro ‘ELEM_SWAP’ 43 | ELEM_SWAP(a[i],a[j]) ; | ^~~~~~~~~ [ 1%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o cd /<>/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -MF CMakeFiles/inih.dir/ini.c.o.d -o CMakeFiles/inih.dir/ini.c.o -c /<>/libs/inih-r29/ini.c [ 1%] Linking CXX static library ../../libdevillard.a cd /<>/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o /usr/bin/ranlib ../../libdevillard.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target devillard make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libs/nkidecompress /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libs/nkidecompress /<>/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o cd /<>/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++17 -MD -MT libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -MF CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o.d -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /<>/libs/nkidecompress/nkidecompress.cxx [ 1%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o cd /<>/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++17 -MD -MT libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o -MF CMakeFiles/inih.dir/INIReader.cpp.o.d -o CMakeFiles/inih.dir/INIReader.cpp.o -c /<>/libs/inih-r29/INIReader.cpp [ 1%] Linking C static library ../../libspecfun.a cd /<>/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o /usr/bin/ranlib ../../libspecfun.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target specfun make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/sys /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/sys /<>/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -MF CMakeFiles/plmsys.dir/dir_list.cxx.o.d -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /<>/src/plastimatch/sys/dir_list.cxx [ 1%] Linking CXX static library ../../libnkidecompress.a cd /<>/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o /usr/bin/ranlib ../../libnkidecompress.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target nkidecompress make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/clp /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/clp /<>/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/clp -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++17 -MD -MT src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -MF CMakeFiles/plmclp.dir/plm_clp.cxx.o.d -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /<>/src/plastimatch/clp/plm_clp.cxx [ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -MF CMakeFiles/plmsys.dir/dlib_threads.cxx.o.d -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /<>/src/plastimatch/sys/dlib_threads.cxx [ 1%] Linking C static library ../../liblbfgs.a cd /<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -P CMakeFiles/lbfgs.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../liblbfgs.a CMakeFiles/lbfgs.dir/lib/lbfgs.c.o /usr/bin/ranlib ../../liblbfgs.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target lbfgs [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o -MF CMakeFiles/plmsys.dir/file_util.cxx.o.d -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /<>/src/plastimatch/sys/file_util.cxx [ 2%] Linking CXX static library ../../libinih.a cd /<>/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -P CMakeFiles/inih.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -E cmake_link_script CMakeFiles/inih.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libinih.a CMakeFiles/inih.dir/ini.c.o CMakeFiles/inih.dir/INIReader.cpp.o /usr/bin/ranlib ../../libinih.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target inih [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o -MF CMakeFiles/plmsys.dir/logfile.cxx.o.d -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /<>/src/plastimatch/sys/logfile.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o -MF CMakeFiles/plmsys.dir/option_range.cxx.o.d -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /<>/src/plastimatch/sys/option_range.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -MF CMakeFiles/plmsys.dir/path_util.cxx.o.d -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /<>/src/plastimatch/sys/path_util.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o -MF CMakeFiles/plmsys.dir/plm_endian.cxx.o.d -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /<>/src/plastimatch/sys/plm_endian.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -MF CMakeFiles/plmsys.dir/plm_fwrite.cxx.o.d -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /<>/src/plastimatch/sys/plm_fwrite.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o -MF CMakeFiles/plmsys.dir/plm_sleep.cxx.o.d -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /<>/src/plastimatch/sys/plm_sleep.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o -MF CMakeFiles/plmsys.dir/plm_timer.cxx.o.d -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /<>/src/plastimatch/sys/plm_timer.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o -MF CMakeFiles/plmsys.dir/print_and_exit.cxx.o.d -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /<>/src/plastimatch/sys/print_and_exit.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o -MF CMakeFiles/plmsys.dir/string_util.cxx.o.d -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /<>/src/plastimatch/sys/string_util.cxx [ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/src/plastimatch/sys -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o -MF CMakeFiles/plmsys.dir/delayload_legacy.c.o.d -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /<>/src/plastimatch/sys/delayload_legacy.c [ 4%] Linking CXX static library libplmclp.a cd /<>/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 /usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o /usr/bin/ranlib libplmclp.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target plmclp [ 4%] Linking CXX shared library ../../../libplmsys.so cd /<>/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsys.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmsys.so.1.9 -o ../../../libplmsys.so.1.9 CMakeFiles/plmsys.dir/dir_list.cxx.o CMakeFiles/plmsys.dir/dlib_threads.cxx.o CMakeFiles/plmsys.dir/file_util.cxx.o CMakeFiles/plmsys.dir/logfile.cxx.o CMakeFiles/plmsys.dir/option_range.cxx.o CMakeFiles/plmsys.dir/path_util.cxx.o CMakeFiles/plmsys.dir/plm_endian.cxx.o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o CMakeFiles/plmsys.dir/plm_sleep.cxx.o 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-I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -MF CMakeFiles/plmbase.dir/astroid_dose.cxx.o.d -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /<>/src/plastimatch/base/astroid_dose.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ 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/usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -MF CMakeFiles/plmbase.dir/beam_geometry.cxx.o.d -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /<>/src/plastimatch/base/beam_geometry.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt 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CMakeFiles/plmbase.dir/bspline_header.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /<>/src/plastimatch/base/bspline_header.cxx [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -MF CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /<>/src/plastimatch/base/bspline_interpolate.cxx [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base 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-isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -msse2 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -MF CMakeFiles/plmbase.dir/bspline_warp.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /<>/src/plastimatch/base/bspline_warp.cxx [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda 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-fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /<>/src/plastimatch/base/bspline_xform.cxx [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /<>/src/plastimatch/base/bspline_xform_legacy.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o -MF CMakeFiles/plmbase.dir/cxt_extract.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /<>/src/plastimatch/base/cxt_extract.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o -MF CMakeFiles/plmbase.dir/cxt_io.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /<>/src/plastimatch/base/cxt_io.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -MF CMakeFiles/plmbase.dir/dicom_probe.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /<>/src/plastimatch/base/dicom_probe.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o -MF CMakeFiles/plmbase.dir/dicom_util.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /<>/src/plastimatch/base/dicom_util.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -MF CMakeFiles/plmbase.dir/direction_cosines.cxx.o.d -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /<>/src/plastimatch/base/direction_cosines.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o -MF CMakeFiles/plmbase.dir/direction_matrices.cxx.o.d -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /<>/src/plastimatch/base/direction_matrices.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o -MF CMakeFiles/plmbase.dir/exchkeys.cxx.o.d -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /<>/src/plastimatch/base/exchkeys.cxx In file included from /<>/src/plastimatch/base/exchkeys.cxx:4: /<>/src/plastimatch/base/exchkeys.h:92:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 92 | "TAPE STANDARD #", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:93:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 93 | "INTERCOMPARISON STANDARD #", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:94:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 94 | "INSTITUTION", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:95:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 95 | "DATE CREATED", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:96:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | "WRITER", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:97:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | "IMAGE #", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:98:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 98 | "IMAGE TYPE", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:99:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 99 | "CASE #", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:100:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 100 | "PATIENT NAME", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:101:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 101 | "DATE WRITTEN", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:105:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 105 | "UNIT #", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:106:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 106 | "FILE OF ORIGIN", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:107:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 107 | "COMMENT DESCRIPTION", | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:108:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 108 | "SCAN TYPE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:109:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 109 | "CT OFFSET", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:110:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 110 | "GRID 1 UNITS", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:111:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 111 | "GRID 2 UNITS", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:112:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 112 | "NUMBER REPRESENTATION", | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:113:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 113 | "BYTES PER PIXEL", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:114:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 114 | "NUMBER OF DIMENSIONS", | ^~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:118:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 118 | "SIZE OF DIMENSION 1", | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:119:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 119 | "SIZE OF DIMENSION 2", | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:120:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 120 | "Z VALUE", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:121:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 121 | "X OFFSET", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:122:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 122 | "Y OFFSET", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:123:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 123 | "CT-AIR", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:124:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 124 | "CT-WATER", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:125:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 125 | "SITE OF INTEREST", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:126:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 126 | "SCAN DESCRIPTION", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:127:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 127 | "SCANNER TYPE", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:131:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 131 | "HEAD IN/OUT", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:132:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 132 | "POSITION IN SCAN", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:133:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 133 | "PATIENT ATTITUDE", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:134:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 134 | "TAPE OF ORIGIN", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:135:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 135 | "SCAN ID", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:136:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 136 | "SCAN#", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:137:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 137 | "SCAN DATE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:138:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 138 | "SCAN FILE NAME", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:139:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 139 | "SLICE THICKNESS", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:140:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 140 | "CT SCALE", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:144:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 144 | "DISTRUST ABOVE", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:145:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 145 | "STRUCTURE NAME", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:146:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 146 | "STRUCTURE FORMAT", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:147:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 147 | "NUMBER OF SCANS", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:148:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 148 | "MAXIMUM # SCANS", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:149:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 149 | "MAXIMUM POINTS PER SEGMENT", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:150:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 150 | "MAXIMUM SEGMENTS PER SCAN", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:151:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 151 | "STRUCTURE EDITION", | ^~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:152:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 152 | "STRUCTURE COLOR", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:153:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 153 | "STRUCTURE DESCRIPTION", | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:157:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 157 | "STUDY NUMBER OF ORIGIN", /* Fixed, GCS */ | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:158:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 158 | "ORIENTATION OF STRUCTURE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:159:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 159 | "DOSE #", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:160:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 160 | "DOSE TYPE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:161:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 161 | "DOSE UNITS", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:162:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 162 | "ORIENTATION OF DOSE", | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:163:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 163 | "SIZE OF DIMENSION 3", | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:164:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 164 | "COORD 1 OF FIRST POINT", | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:165:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 165 | "COORD 2 OF FIRST POINT", | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:166:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 166 | "HORIZONTAL GRID INTERVAL", | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:170:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 170 | "VERTICAL GRID INTERVAL", | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:171:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 171 | "DOSE DESCRIPTION", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:172:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 172 | "DOSE EDITION", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:173:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 173 | "PLAN # OF ORIGIN", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:174:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 174 | "PLAN EDITION OF ORIGIN", | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:175:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 175 | "VERSION # OF PROGRAM", | ^~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:176:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 176 | "XCOORD OF NORMALIZN POINT", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:177:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 177 | "YCOORD OF NORMALIZN POINT", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:178:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 178 | "ZCOORD OF NORMALIZN POINT", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:179:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 179 | "DOSE AT NORMALIZN POINT", | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:183:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 183 | "DOSE ERROR", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:184:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 184 | "BEAM #", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:185:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 185 | "BEAM MODALITY", | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:186:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 186 | "BEAM ENERGY(MEV)", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:187:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 187 | "BEAM DESCRIPTION", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:188:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 188 | "RX DOSE PER TX (GY)", | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:189:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 189 | "NUMBER OF TX", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:190:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 190 | "FRACTION GROUP ID", | ^~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:191:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 191 | "BEAM TYPE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:192:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 192 | "PLAN ID OF ORIGIN", | ^~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:196:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 196 | "COLLIMATOR TYPE", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:197:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 197 | "APERTURE TYPE", | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:198:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 198 | "APERTURE DESCRIPTION", | ^~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:199:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 199 | "COLLIMATOR ANGLE", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:200:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 200 | "GANTRY ANGLE", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:201:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 201 | "COUCH ANGLE", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:202:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 202 | "NOMINAL ISOCENTER DIST", | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:203:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 203 | "APERTURE ID", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:204:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 204 | "WEDGE ANGLE", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:205:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 205 | "WEDGE ROTATION ANGLE", | ^~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:209:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 209 | "ARC ANGLE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:210:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 210 | "COMPENSATOR", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:211:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 211 | "VOLUME TYPE", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:212:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 212 | "NUMBER OF PAIRS", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:213:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 213 | "MAXIMUM # PAIRS", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:214:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 214 | "DATE OF DVH", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:215:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 215 | "DOSE SCALE", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:216:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 216 | "VOLUME SCALE", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:217:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 217 | "NUMBER OF FRACTIONS", | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:218:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 218 | "FILM NUMBER", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:222:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 222 | "FILM DATE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:223:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 223 | "FILM TYPE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:224:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 224 | "SOURCE IMAGE DISTANCE", | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:225:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 225 | "FILM DESCRIPTION", | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:226:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 226 | "FILM SOURCE", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:227:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 227 | "OD SCALE", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:228:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 228 | "BITS PER PIXEL", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:229:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 229 | "DOSE VOLUME HISTOGRAM", | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:230:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 230 | "SEED MODEL", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:231:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 231 | "ISOTOPE", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:235:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 235 | "SEED STRENGTH", | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:236:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 236 | "STRENGTH UNITS", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:237:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 237 | "DATE OF IMPLANT", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:238:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 238 | "NUMBER OF SEEDS", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:239:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 239 | "IMAGE SOURCE", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:240:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 240 | "PIXEL OFFSET", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:241:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 241 | "UNDEFINEDKEY", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:242:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 242 | "COORD 3 OF FIRST POINT", /* GCS */ | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:243:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 243 | "DEPTH GRID INTERVAL" /* GCS */ | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:255:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 255 | "COMMENT", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:256:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 256 | "CT SCAN", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:257:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 257 | "MRI", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:258:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 258 | "ULTRASOUND", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:259:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 259 | "STRUCTURE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:260:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 260 | "BEAM GEOMETRY", | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:261:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 261 | "DIGITAL FILM", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:262:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 262 | "DOSE", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:263:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 263 | "DOSE VOLUME HISTOGRAM", | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:264:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 264 | "SEED GEOMETRY", | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:268:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 268 | "TRANSVERSE", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:269:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 269 | "SAGITTAL", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:270:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 270 | "CORONAL", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:271:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 271 | "TWO'S COMPLEMENT INTEGER", | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:272:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 272 | "CHARACTER", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:273:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 273 | "IN", | ^~~~ /<>/src/plastimatch/base/exchkeys.h:274:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 274 | "OUT", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:275:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 275 | "NOSE UP", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:276:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 276 | "NOSE DOWN", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:277:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 277 | "LEFT SIDE DOWN", | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:281:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 281 | "RIGHT SIDE DOWN", | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:282:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 282 | "SCAN-BASED", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:283:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 283 | "NOMINAL", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:284:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 284 | "MINIMUM", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:285:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 285 | "MAXIMUM", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:286:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 286 | "PHYSICAL", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:287:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 287 | "EFFECTIVE", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:288:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 288 | "LET", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:289:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 289 | "OER", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:290:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 290 | "ERROR", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:294:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 294 | "GRAYS", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:295:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 295 | "RADS", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:296:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 296 | "CGYS", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:297:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 297 | "PERCENT", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:298:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 298 | "RELATIVE", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:299:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 299 | "ABSOLUTE", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:300:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 300 | "CGE", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:301:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 301 | "SIMULATOR", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:302:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 302 | "DRR", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:303:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 303 | "PORT", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:307:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 307 | "UNSIGNED BYTE", | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:308:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 308 | "X-RAY", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:309:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 309 | "ELECTRON", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:310:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 310 | "NEUTRON", | ^~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:311:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 311 | "PROTON", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:312:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 312 | "OTHER", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:313:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 313 | "COLLIMATOR", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:314:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 314 | "BLOCK", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:315:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 315 | "MLC_X", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:316:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 316 | "MLC_Y", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:320:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 320 | "MLC_XY", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:321:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 321 | "STATIC", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:322:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 322 | "ARC", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:323:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 323 | "SYMMETRIC", | ^~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:324:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 324 | "ASYMMETRIC", | ^~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:325:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 325 | "ASYMMETRIC_X", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:326:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 326 | "ASYMMETRIC_Y", | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:327:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 327 | "NONE", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:328:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 328 | "1D-X", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:329:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 329 | "1D-Y", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:333:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 333 | "2D", | ^~~~ /<>/src/plastimatch/base/exchkeys.h:334:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 334 | "3D", | ^~~~ /<>/src/plastimatch/base/exchkeys.h:335:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 335 | "FILM", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:336:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 336 | "ONLINE", | ^~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:337:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 337 | "COMPUTED", | ^~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:338:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 338 | "I125", | ^~~~~~ /<>/src/plastimatch/base/exchkeys.h:339:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 339 | "PD103", | ^~~~~~~ /<>/src/plastimatch/base/exchkeys.h:340:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 340 | "MCI", | ^~~~~ /<>/src/plastimatch/base/exchkeys.h:341:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 341 | "CGYCM2PERHR", | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/exchkeys.h:342:3: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 342 | "SECONDARY CAPTURE" | ^~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o -MF CMakeFiles/plmbase.dir/float_pair_list.cxx.o.d -o CMakeFiles/plmbase.dir/float_pair_list.cxx.o -c /<>/src/plastimatch/base/float_pair_list.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o -MF CMakeFiles/plmbase.dir/gaussian.cxx.o.d -o CMakeFiles/plmbase.dir/gaussian.cxx.o -c /<>/src/plastimatch/base/gaussian.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o -MF CMakeFiles/plmbase.dir/hnd_io.cxx.o.d -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /<>/src/plastimatch/base/hnd_io.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -MF CMakeFiles/plmbase.dir/image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /<>/src/plastimatch/base/image_stats.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o -MF CMakeFiles/plmbase.dir/interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /<>/src/plastimatch/base/interpolate.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o -MF CMakeFiles/plmbase.dir/itk_bbox.cxx.o.d -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /<>/src/plastimatch/base/itk_bbox.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o -MF CMakeFiles/plmbase.dir/itk_directions.cxx.o.d -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /<>/src/plastimatch/base/itk_directions.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o -MF CMakeFiles/plmbase.dir/itk_image.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image.cxx.o -c /<>/src/plastimatch/base/itk_image.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -c /<>/src/plastimatch/base/itk_image_accumulate.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_cast.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -c /<>/src/plastimatch/base/itk_image_cast.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_clone.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -c /<>/src/plastimatch/base/itk_image_clone.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_create.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_create.cxx.o -c /<>/src/plastimatch/base/itk_image_create.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -c /<>/src/plastimatch/base/itk_image_header_compare.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -c /<>/src/plastimatch/base/itk_image_load_char.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -c /<>/src/plastimatch/base/itk_image_load_double.cxx In file included from /<>/src/plastimatch/base/itk_image_load_char.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = char; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_char.cxx:21:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -c /<>/src/plastimatch/base/itk_image_load_float.cxx In file included from /<>/src/plastimatch/base/itk_image_load_double.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = double; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_double.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /<>/src/plastimatch/base/itk_image_load_float.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = float; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_float.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -c /<>/src/plastimatch/base/itk_image_load_int32.cxx In file included from /<>/src/plastimatch/base/itk_image_load_int32.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = int; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_int32.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -c /<>/src/plastimatch/base/itk_image_load_int64.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -c /<>/src/plastimatch/base/itk_image_load_short.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -c /<>/src/plastimatch/base/itk_image_load_uchar.cxx In file included from /<>/src/plastimatch/base/itk_image_load_int64.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long int; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_int64.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /<>/src/plastimatch/base/itk_image_load_short.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short int; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_short.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /<>/src/plastimatch/base/itk_image_load_uchar.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned char; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_uchar.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -c /<>/src/plastimatch/base/itk_image_load_uint32.cxx In file included from /<>/src/plastimatch/base/itk_image_load_uint32.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_uint32.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -c /<>/src/plastimatch/base/itk_image_load_uint64.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /<>/src/plastimatch/base/itk_image_load_ushort.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /<>/src/plastimatch/base/itk_image_load_vec.cxx In file included from /<>/src/plastimatch/base/itk_image_load_uint64.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_uint64.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /<>/src/plastimatch/base/itk_image_load_ushort.cxx:6: /<>/src/plastimatch/base/itk_image_load.txx: In instantiation of ‘typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]’: /<>/src/plastimatch/base/itk_image_load_ushort.cxx:20:27: required from here /<>/src/plastimatch/base/itk_image_load.txx:140:65: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘itk::ImageIOBase::IOComponentType’ {aka ‘itk::CommonEnums::IOComponent’} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_origin.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /<>/src/plastimatch/base/itk_image_origin.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_region.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /<>/src/plastimatch/base/itk_image_region.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_save.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_save.cxx.o -c /<>/src/plastimatch/base/itk_image_save.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -c /<>/src/plastimatch/base/itk_image_shift_scale.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -c /<>/src/plastimatch/base/itk_image_stats.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/itk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/itk_metadata.cxx.o -c /<>/src/plastimatch/base/itk_metadata.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o -MF CMakeFiles/plmbase.dir/itk_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/itk_pointset.cxx.o -c /<>/src/plastimatch/base/itk_pointset.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o -MF CMakeFiles/plmbase.dir/itk_resample.cxx.o.d -o CMakeFiles/plmbase.dir/itk_resample.cxx.o -c /<>/src/plastimatch/base/itk_resample.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -MF CMakeFiles/plmbase.dir/itk_volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -c /<>/src/plastimatch/base/itk_volume_header.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o -MF CMakeFiles/plmbase.dir/itk_warp.cxx.o.d -o CMakeFiles/plmbase.dir/itk_warp.cxx.o -c /<>/src/plastimatch/base/itk_warp.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o -MF CMakeFiles/plmbase.dir/mc_dose.cxx.o.d -o CMakeFiles/plmbase.dir/mc_dose.cxx.o -c /<>/src/plastimatch/base/mc_dose.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o -MF CMakeFiles/plmbase.dir/metadata.cxx.o.d -o CMakeFiles/plmbase.dir/metadata.cxx.o -c /<>/src/plastimatch/base/metadata.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o -MF CMakeFiles/plmbase.dir/mha_io.cxx.o.d -o CMakeFiles/plmbase.dir/mha_io.cxx.o -c /<>/src/plastimatch/base/mha_io.cxx /<>/src/plastimatch/base/mha_io.cxx: In function ‘void write_mha_internal(const char*, const Volume*)’: /<>/src/plastimatch/base/mha_io.cxx:33:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 33 | "ObjectType = Image\n" | ^~~~~~~~~~~~~~~~~~~~~~ 34 | "NDims = 3\n" | ~~~~~~~~~~~~~ 35 | "BinaryData = True\n" | ~~~~~~~~~~~~~~~~~~~~~ 36 | "BinaryDataByteOrderMSB = False\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | "TransformMatrix = %g %g %g %g %g %g %g %g %g\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 | "Offset = %g %g %g\n" | ~~~~~~~~~~~~~~~~~~~~~ 39 | "CenterOfRotation = 0 0 0\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | "ElementSpacing = %g %g %g\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 | "DimSize = %d %d %d\n" | ~~~~~~~~~~~~~~~~~~~~~~ 42 | "AnatomicalOrientation = RAI\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "%s" | ~~~~ 44 | "ElementType = %s\n" | ~~~~~~~~~~~~~~~~~~~~ 45 | "ElementDataFile = LOCAL\n"; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/mha_io.cxx:59:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 59 | element_type = "MET_UCHAR"; | ^~~~~~~~~~~ /<>/src/plastimatch/base/mha_io.cxx:62:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 62 | element_type = "MET_SHORT"; | ^~~~~~~~~~~ /<>/src/plastimatch/base/mha_io.cxx:65:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 65 | element_type = "MET_UINT"; | ^~~~~~~~~~ /<>/src/plastimatch/base/mha_io.cxx:68:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 68 | element_type = "MET_FLOAT"; | ^~~~~~~~~~~ /<>/src/plastimatch/base/mha_io.cxx:71:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 71 | element_type = "MET_FLOAT"; | ^~~~~~~~~~~ [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o -MF CMakeFiles/plmbase.dir/nki_io.cxx.o.d -o CMakeFiles/plmbase.dir/nki_io.cxx.o -c /<>/src/plastimatch/base/nki_io.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o -MF CMakeFiles/plmbase.dir/parameter_parser.cxx.o.d -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /<>/src/plastimatch/base/parameter_parser.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o -MF CMakeFiles/plmbase.dir/plm_file_format.cxx.o.d -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /<>/src/plastimatch/base/plm_file_format.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -MF CMakeFiles/plmbase.dir/plm_image.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /<>/src/plastimatch/base/plm_image.cxx /<>/src/plastimatch/base/plm_file_format.cxx: In function ‘char* plm_file_format_string(Plm_file_format)’: /<>/src/plastimatch/base/plm_file_format.cxx:178:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 178 | return "No file"; | ^~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:180:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 180 | return "Unknown"; | ^~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:182:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 182 | return "Image"; | ^~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:184:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 184 | return "Vector field"; | ^~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:186:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 186 | return "Dij matrix"; | ^~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:188:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 188 | return "Pointset"; | ^~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:190:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 190 | return "Cxt file"; | ^~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:192:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 192 | return "DICOM directory"; | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:194:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 194 | return "XiO directory"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:196:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 196 | return "RTOG directory"; | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:198:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 198 | return "RT study directory"; | ^~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:200:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 200 | return "Projection image"; | ^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:202:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 202 | return "DICOM-RT SS"; | ^~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:204:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 204 | return "DICOM-RT dose"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:206:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 206 | return "Structure set image"; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx:208:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 208 | return "Unknown/default"; | ^~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_file_format.cxx: In function ‘Plm_file_format plm_file_format_deduce(const char*)’: /<>/src/plastimatch/base/plm_file_format.cxx:97:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets (line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_convert.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /<>/src/plastimatch/base/plm_image_convert.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_header.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_header.cxx.o -c /<>/src/plastimatch/base/plm_image_header.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_set.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_set.cxx.o -c /<>/src/plastimatch/base/plm_image_set.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_type.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_type.cxx.o -c /<>/src/plastimatch/base/plm_image_type.cxx /<>/src/plastimatch/base/plm_image_type.cxx: In function ‘char* plm_image_type_string(Plm_image_type)’: /<>/src/plastimatch/base/plm_image_type.cxx:68:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 68 | return "PLM_IMG_TYPE_UNDEFINED"; | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:70:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 70 | return "PLM_IMG_TYPE_ITK_UCHAR"; | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:72:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 72 | return "PLM_IMG_TYPE_ITK_CHAR"; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:74:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 74 | return "PLM_IMG_TYPE_ITK_USHORT"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:76:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 76 | return "PLM_IMG_TYPE_ITK_SHORT"; | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:78:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 78 | return "PLM_IMG_TYPE_ITK_ULONG"; | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:80:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 80 | return "PLM_IMG_TYPE_ITK_LONG"; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:82:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 82 | return "PLM_IMG_TYPE_ITK_UINT64"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:84:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 84 | return "PLM_IMG_TYPE_ITK_INT64"; | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:86:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 86 | return "PLM_IMG_TYPE_ITK_FLOAT"; | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:88:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 88 | return "PLM_IMG_TYPE_ITK_DOUBLE"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:90:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 90 | return "PLM_IMG_TYPE_ITK_FLOAT_FIELD"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:92:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 92 | return "PLM_IMG_TYPE_ITK_UCHAR_VEC"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:94:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 94 | return "PLM_IMG_TYPE_GPUIT_UCHAR"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:96:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | return "PLM_IMG_TYPE_GPUIT_UINT16"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:98:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 98 | return "PLM_IMG_TYPE_GPUIT_SHORT"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:100:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 100 | return "PLM_IMG_TYPE_GPUIT_UINT32"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:102:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 102 | return "PLM_IMG_TYPE_GPUIT_INT32"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:104:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 104 | return "PLM_IMG_TYPE_GPUIT_FLOAT"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:106:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 106 | return "PLM_IMG_TYPE_GPUIT_FLOAT_FIELD"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:108:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 108 | return "PLM_IMG_TYPE_GPUIT_LIST"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:110:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 110 | return "PLM_IMG_TYPE_GPUIT_UCHAR_VEC"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:112:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 112 | return "(unknown image type)"; | ^~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx: In function ‘char* plm_image_type_string_simple(Plm_image_type)’: /<>/src/plastimatch/base/plm_image_type.cxx:121:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 121 | return "undefined"; | ^~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:123:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 123 | return "unsigned char"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:125:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 125 | return "char"; | ^~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:127:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 127 | return "unsigned short"; | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:129:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 129 | return "short"; | ^~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:131:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 131 | return "unsigned long"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:133:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 133 | return "long"; | ^~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:135:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 135 | return "uint64_t"; | ^~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:137:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 137 | return "int64_t"; | ^~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:139:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 139 | return "float"; | ^~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:141:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 141 | return "double"; | ^~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:143:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 143 | return "float"; | ^~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:145:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 145 | return "unsigned char"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:147:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 147 | return "unsigned char"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:149:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 149 | return "unsigned short"; | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:151:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 151 | return "short"; | ^~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:153:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 153 | return "unsigned long"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:155:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 155 | return "long"; | ^~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:157:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 157 | return "float"; | ^~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:159:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 159 | return "float"; | ^~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:161:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 161 | return "list (unknown)"; | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:163:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 163 | return "unsigned char"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/plm_image_type.cxx:165:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 165 | return "(unknown)"; | ^~~~~~~~~~~ [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o -MF CMakeFiles/plmbase.dir/plm_warp.cxx.o.d -o CMakeFiles/plmbase.dir/plm_warp.cxx.o -c /<>/src/plastimatch/base/plm_warp.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o -MF CMakeFiles/plmbase.dir/pointset.cxx.o.d -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /<>/src/plastimatch/base/pointset.cxx /<>/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_fcsv(const char*) [with T = Labeled_point]’: /<>/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 65 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_fcsv(const char*) [with T = Point]’: /<>/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -MF CMakeFiles/plmbase.dir/pointset_warp.cxx.o.d -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /<>/src/plastimatch/base/pointset_warp.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o -MF CMakeFiles/plmbase.dir/proj_image.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /<>/src/plastimatch/base/proj_image.cxx /<>/src/plastimatch/base/proj_image.cxx: In function ‘void pfm_load(Proj_image*, const char*)’: /<>/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 175 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/proj_image.cxx:183:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -MF CMakeFiles/plmbase.dir/proj_image_dir.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /<>/src/plastimatch/base/proj_image_dir.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o -MF CMakeFiles/plmbase.dir/proj_matrix.cxx.o.d -o CMakeFiles/plmbase.dir/proj_matrix.cxx.o -c /<>/src/plastimatch/base/proj_matrix.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o -MF CMakeFiles/plmbase.dir/proj_volume.cxx.o.d -o CMakeFiles/plmbase.dir/proj_volume.cxx.o -c /<>/src/plastimatch/base/proj_volume.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o -MF CMakeFiles/plmbase.dir/pwlut.cxx.o.d -o CMakeFiles/plmbase.dir/pwlut.cxx.o -c /<>/src/plastimatch/base/pwlut.cxx /<>/src/plastimatch/base/proj_volume.cxx: In member function ‘void Proj_volume::save_header(const char*)’: /<>/src/plastimatch/base/proj_volume.cxx:299:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 299 | fprintf (fp, "num_steps=%d\n", d_ptr->num_steps); | ~^ ~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/base/proj_volume.cxx:301:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 301 | fprintf (fp, "image_dim=%d %d\n", | ~^ | | | int | %ld 302 | d_ptr->image_dim[0], d_ptr->image_dim[1]); | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} /<>/src/plastimatch/base/proj_volume.cxx:301:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 301 | fprintf (fp, "image_dim=%d %d\n", | ~^ | | | int | %ld 302 | d_ptr->image_dim[0], d_ptr->image_dim[1]); | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -MF CMakeFiles/plmbase.dir/rasterize_slice.cxx.o.d -o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -c /<>/src/plastimatch/base/rasterize_slice.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o -MF CMakeFiles/plmbase.dir/rasterizer.cxx.o.d -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /<>/src/plastimatch/base/rasterizer.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o -MF CMakeFiles/plmbase.dir/raw_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/raw_pointset.cxx.o -c /<>/src/plastimatch/base/raw_pointset.cxx /<>/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_fcsv(const char*)’: /<>/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_txt(const char*)’: /<>/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /<>/src/plastimatch/base/ray_trace_probe.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /<>/src/plastimatch/base/ray_trace_uniform.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume.cxx.o -c /<>/src/plastimatch/base/rpl_volume.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -c /<>/src/plastimatch/base/rpl_volume_lut.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -MF CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o.d -o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -c /<>/src/plastimatch/base/rtds_dcmtk.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o -MF CMakeFiles/plmbase.dir/rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study.cxx.o -c /<>/src/plastimatch/base/rt_study.cxx /<>/src/plastimatch/base/rpl_volume.cxx: In member function ‘void Rpl_volume::apply_beam_modifiers()’: /<>/src/plastimatch/base/rpl_volume.cxx:1471:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); | ~^ ~~~~~~~ | | | | int long int | %ld /<>/src/plastimatch/base/rpl_volume.cxx:1471:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); | ~^ ~~~~~~~ | | | | int long int | %ld [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -MF CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -c /<>/src/plastimatch/base/rt_study_metadata.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o -MF CMakeFiles/plmbase.dir/rtog_io.cxx.o.d -o CMakeFiles/plmbase.dir/rtog_io.cxx.o -c /<>/src/plastimatch/base/rtog_io.cxx /<>/src/plastimatch/base/rtog_io.cxx: In function ‘void load_rtog_header(RTOG_Header*, Program_Parms*)’: /<>/src/plastimatch/base/rtog_io.cxx:411:97: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 411 | rc = set_ct_fval (rtog_header, &rtog_line, imno, &rtog_header->ct.grid_1_units, "grid_1"); | ^~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:417:97: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 417 | rc = set_ct_fval (rtog_header, &rtog_line, imno, &rtog_header->ct.grid_2_units, "grid_2"); | ^~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:423:104: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 423 | rc = set_ct_ival (rtog_header, &rtog_line, imno, &rtog_header->ct.size_of_dimension_1, "size 1"); | ^~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:432:104: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 432 | rc = set_ct_ival (rtog_header, &rtog_line, imno, &rtog_header->ct.size_of_dimension_2, "size 2"); | ^~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:445:93: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 445 | rc = set_ct_fval (rtog_header, &rtog_line, imno, &rtog_header->ct.x_offset, "x_offset"); | ^~~~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:451:93: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 451 | rc = set_ct_fval (rtog_header, &rtog_line, imno, &rtog_header->ct.y_offset, "y_offset"); | ^~~~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:457:94: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 457 | rc = set_ct_ival (rtog_header, &rtog_line, imno, &rtog_header->ct.ct_offset, "ct_offset"); | ^~~~~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:463:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 463 | rc = set_ct_ival (rtog_header, &rtog_line, imno, &rtog_header->ct.ct_air, "ct_air"); | ^~~~~~~~ /<>/src/plastimatch/base/rtog_io.cxx:469:93: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 469 | rc = set_ct_ival (rtog_header, &rtog_line, imno, &rtog_header->ct.ct_water, "ct_water"); | ^~~~~~~~~~ [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o -MF CMakeFiles/plmbase.dir/rtss.cxx.o.d -o CMakeFiles/plmbase.dir/rtss.cxx.o -c /<>/src/plastimatch/base/rtss.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o -MF CMakeFiles/plmbase.dir/rtss_contour.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_contour.cxx.o -c /<>/src/plastimatch/base/rtss_contour.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o -MF CMakeFiles/plmbase.dir/rtss_roi.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_roi.cxx.o -c /<>/src/plastimatch/base/rtss_roi.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o -MF CMakeFiles/plmbase.dir/rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan.cxx.o -c /<>/src/plastimatch/base/rtplan.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_beam.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -c /<>/src/plastimatch/base/rtplan_beam.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -c /<>/src/plastimatch/base/rtplan_control_pt.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER 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/usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o -MF CMakeFiles/plmbase.dir/segmentation.cxx.o.d -o CMakeFiles/plmbase.dir/segmentation.cxx.o -c /<>/src/plastimatch/base/segmentation.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o -MF CMakeFiles/plmbase.dir/slice_extract.cxx.o.d -o CMakeFiles/plmbase.dir/slice_extract.cxx.o -c /<>/src/plastimatch/base/slice_extract.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o -MF CMakeFiles/plmbase.dir/slice_list.cxx.o.d -o CMakeFiles/plmbase.dir/slice_list.cxx.o -c /<>/src/plastimatch/base/slice_list.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -MF CMakeFiles/plmbase.dir/ss_img_extract.cxx.o.d -o CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -c /<>/src/plastimatch/base/ss_img_extract.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment 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-D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o -MF CMakeFiles/plmbase.dir/ss_list_io.cxx.o.d -o CMakeFiles/plmbase.dir/ss_list_io.cxx.o -c /<>/src/plastimatch/base/ss_list_io.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/threading.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/threading.cxx.o -MF CMakeFiles/plmbase.dir/threading.cxx.o.d -o CMakeFiles/plmbase.dir/threading.cxx.o -c /<>/src/plastimatch/base/threading.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o -MF CMakeFiles/plmbase.dir/thumbnail.cxx.o.d -o CMakeFiles/plmbase.dir/thumbnail.cxx.o -c /<>/src/plastimatch/base/thumbnail.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o -MF CMakeFiles/plmbase.dir/vf.cxx.o.d -o CMakeFiles/plmbase.dir/vf.cxx.o -c /<>/src/plastimatch/base/vf.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o -MF CMakeFiles/plmbase.dir/vf_convolve.cxx.o.d -o CMakeFiles/plmbase.dir/vf_convolve.cxx.o -c /<>/src/plastimatch/base/vf_convolve.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -MF CMakeFiles/plmbase.dir/vf_jacobian.cxx.o.d -o CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -c /<>/src/plastimatch/base/vf_jacobian.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o -MF CMakeFiles/plmbase.dir/vf_stats.cxx.o.d -o CMakeFiles/plmbase.dir/vf_stats.cxx.o -c /<>/src/plastimatch/base/vf_stats.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o -MF CMakeFiles/plmbase.dir/volume.cxx.o.d -o CMakeFiles/plmbase.dir/volume.cxx.o -c /<>/src/plastimatch/base/volume.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o -MF CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o.d -o CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o -c /<>/src/plastimatch/base/volume_boundary_behavior.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o -MF CMakeFiles/plmbase.dir/volume_conv.cxx.o.d -o CMakeFiles/plmbase.dir/volume_conv.cxx.o -c /<>/src/plastimatch/base/volume_conv.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o -MF CMakeFiles/plmbase.dir/volume_fill.cxx.o.d -o CMakeFiles/plmbase.dir/volume_fill.cxx.o -c /<>/src/plastimatch/base/volume_fill.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -MF CMakeFiles/plmbase.dir/volume_gaussian.cxx.o.d -o CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -c /<>/src/plastimatch/base/volume_gaussian.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o -MF CMakeFiles/plmbase.dir/volume_grad.cxx.o.d -o CMakeFiles/plmbase.dir/volume_grad.cxx.o -c /<>/src/plastimatch/base/volume_grad.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o -MF CMakeFiles/plmbase.dir/volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/volume_header.cxx.o -c /<>/src/plastimatch/base/volume_header.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o -MF CMakeFiles/plmbase.dir/volume_limit.cxx.o.d -o CMakeFiles/plmbase.dir/volume_limit.cxx.o -c /<>/src/plastimatch/base/volume_limit.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o -MF CMakeFiles/plmbase.dir/volume_resample.cxx.o.d -o CMakeFiles/plmbase.dir/volume_resample.cxx.o -c /<>/src/plastimatch/base/volume_resample.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o -MF CMakeFiles/plmbase.dir/volume_stats.cxx.o.d -o CMakeFiles/plmbase.dir/volume_stats.cxx.o -c /<>/src/plastimatch/base/volume_stats.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o -MF CMakeFiles/plmbase.dir/xform.cxx.o.d -o CMakeFiles/plmbase.dir/xform.cxx.o -c /<>/src/plastimatch/base/xform.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o -MF CMakeFiles/plmbase.dir/xform_convert.cxx.o.d -o CMakeFiles/plmbase.dir/xform_convert.cxx.o -c /<>/src/plastimatch/base/xform_convert.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /<>/src/plastimatch/base/xform_legacy.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o -MF CMakeFiles/plmbase.dir/xform_point.cxx.o.d -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /<>/src/plastimatch/base/xform_point.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /<>/src/plastimatch/base/xio_ct.cxx /<>/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)’: /<>/src/plastimatch/base/xform_legacy.cxx:230:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘itk::Transform::NumberOfParametersType’ {aka ‘long unsigned int’} [-Wformat=] 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int itk::Transform::NumberOfParametersType {aka long unsigned int} | %ld /<>/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_load(Xform*, FILE*)’: /<>/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37 | fgets (buf,1024,fp); | ~~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/xform_legacy.cxx:99:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 99 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/xform_legacy.cxx:100:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/xform_legacy.cxx:103:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 103 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/xform_legacy.cxx:141:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/xform_legacy.cxx:150:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 150 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/xform_legacy.cxx:156:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/src/plastimatch/base/xform_legacy.cxx:168:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /<>/src/plastimatch/base/xio_ct_transform.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -MF CMakeFiles/plmbase.dir/xio_demographic.cxx.o.d -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /<>/src/plastimatch/base/xio_demographic.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o -MF CMakeFiles/plmbase.dir/xio_dir.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /<>/src/plastimatch/base/xio_dir.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o -MF CMakeFiles/plmbase.dir/xio_dose.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /<>/src/plastimatch/base/xio_dose.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o -MF CMakeFiles/plmbase.dir/xio_patient.cxx.o.d -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /<>/src/plastimatch/base/xio_patient.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o -MF CMakeFiles/plmbase.dir/xio_plan.cxx.o.d -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /<>/src/plastimatch/base/xio_plan.cxx /<>/src/plastimatch/base/xio_dose.cxx: In function ‘void xio_dose_load_header(Xio_dose_header*, const char*)’: /<>/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 73 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:82:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:86:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:101:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:106:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:117:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 117 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 120 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o -MF CMakeFiles/plmbase.dir/xio_structures.cxx.o.d -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /<>/src/plastimatch/base/xio_structures.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o -MF CMakeFiles/plmbase.dir/xio_studyset.cxx.o.d -o CMakeFiles/plmbase.dir/xio_studyset.cxx.o -c /<>/src/plastimatch/base/xio_studyset.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o -MF CMakeFiles/plmbase.dir/xpm.cxx.o.d -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /<>/src/plastimatch/base/xpm.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_file.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /<>/src/plastimatch/base/dcmtk_file.cxx /<>/src/plastimatch/base/xio_structures.cxx: In function ‘void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)’: /<>/src/plastimatch/base/xio_structures.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 120 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_structures.cxx:121:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 121 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_structures.cxx:122:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 122 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_structures.cxx:123:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_structures.cxx:124:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_structures.cxx:134:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 134 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_structures.cxx:141:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/src/plastimatch/base/xio_structures.cxx:180:19: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_image.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /<>/src/plastimatch/base/dcmtk_image.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /<>/src/plastimatch/base/dcmtk_metadata.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_module.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /<>/src/plastimatch/base/dcmtk_module.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /<>/src/plastimatch/base/dcmtk_rdd.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /<>/src/plastimatch/base/dcmtk_rtdose.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose 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/<>/src/plastimatch/base/dcmtk_rtss.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /<>/src/plastimatch/base/dcmtk_rtplan.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base 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-O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /<>/src/plastimatch/base/dcmtk_rt_study.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /<>/src/plastimatch/base/dcmtk_rt_study_p.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/nkidecompress -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_series.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /<>/src/plastimatch/base/dcmtk_series.cxx /<>/src/plastimatch/base/dcmtk_rtplan.cxx: In member function ‘void Dcmtk_rt_study::rt_ion_plan_load()’: /<>/src/plastimatch/base/dcmtk_rtplan.cxx:101:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 101 | printf (">> Num beams = %d\n", num_beams); | ~^ ~~~~~~~~~ | | | | int long unsigned int | %ld /<>/src/plastimatch/base/dcmtk_rtplan.cxx:142:35: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 142 | printf (">> Adding beam (%d cp)\n", num_cp); | ~^ ~~~~~~ | | | | int long unsigned int | %ld /<>/src/plastimatch/base/dcmtk_rtplan.cxx:208:37: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 208 | printf (">> Adding cp (%d spots)\n", num_spots); | ~^ ~~~~~~~~~ | | | | int long int | %ld [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER 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/usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /<>/src/plastimatch/base/dcmtk_sro.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/src/plastimatch/base -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda 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/usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 cd /<>/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/cmake -E cmake_symlink_library ../../../libplmbase.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmbase.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target plmbase make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/util /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/util /<>/obj-x86_64-linux-gnu/src/plastimatch/util/CMakeFiles/plmutil.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -MF CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o.d -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /<>/src/plastimatch/util/dicom_sro_save.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -MF CMakeFiles/plmutil.dir/dice_statistics.cxx.o.d -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /<>/src/plastimatch/util/dice_statistics.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -MF CMakeFiles/plmutil.dir/bspline_correspond.cxx.o.d -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /<>/src/plastimatch/util/bspline_correspond.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -MF CMakeFiles/plmutil.dir/distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /<>/src/plastimatch/util/distance_map.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o -MF CMakeFiles/plmutil.dir/diff.cxx.o.d -o CMakeFiles/plmutil.dir/diff.cxx.o -c /<>/src/plastimatch/util/diff.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -MF CMakeFiles/plmutil.dir/dvh.cxx.o.d -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /<>/src/plastimatch/util/dvh.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -MF CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o.d -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /<>/src/plastimatch/util/gamma_dose_comparison.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -MF CMakeFiles/plmutil.dir/geometry_chooser.cxx.o.d -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /<>/src/plastimatch/util/geometry_chooser.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -MF CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o.d -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /<>/src/plastimatch/util/hausdorff_distance.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -MF CMakeFiles/plmutil.dir/image_boundary.cxx.o.d -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /<>/src/plastimatch/util/image_boundary.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o -MF CMakeFiles/plmutil.dir/image_center.cxx.o.d -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /<>/src/plastimatch/util/image_center.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o -MF CMakeFiles/plmutil.dir/itk_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /<>/src/plastimatch/util/itk_adjust.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o -MF CMakeFiles/plmutil.dir/itk_crop.cxx.o.d -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /<>/src/plastimatch/util/itk_crop.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -MF CMakeFiles/plmutil.dir/itk_distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /<>/src/plastimatch/util/itk_distance_map.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o -MF CMakeFiles/plmutil.dir/itk_gabor.cxx.o.d -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /<>/src/plastimatch/util/itk_gabor.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -MF CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o.d -o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -c /<>/src/plastimatch/util/itk_histogram_matching.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o -MF CMakeFiles/plmutil.dir/itk_intersect.cxx.o.d -o CMakeFiles/plmutil.dir/itk_intersect.cxx.o -c /<>/src/plastimatch/util/itk_intersect.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -MF CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o.d -o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -c /<>/src/plastimatch/util/itk_local_intensity_correction.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o -MF CMakeFiles/plmutil.dir/itk_mask.cxx.o.d -o CMakeFiles/plmutil.dir/itk_mask.cxx.o -c /<>/src/plastimatch/util/itk_mask.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o -MF CMakeFiles/plmutil.dir/itk_scale.cxx.o.d -o CMakeFiles/plmutil.dir/itk_scale.cxx.o -c /<>/src/plastimatch/util/itk_scale.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o -MF CMakeFiles/plmutil.dir/itk_threshold.cxx.o.d -o CMakeFiles/plmutil.dir/itk_threshold.cxx.o -c /<>/src/plastimatch/util/itk_threshold.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o -MF CMakeFiles/plmutil.dir/itk_union.cxx.o.d -o CMakeFiles/plmutil.dir/itk_union.cxx.o -c /<>/src/plastimatch/util/itk_union.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o -MF CMakeFiles/plmutil.dir/landmark_diff.cxx.o.d -o CMakeFiles/plmutil.dir/landmark_diff.cxx.o -c /<>/src/plastimatch/util/landmark_diff.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -MF CMakeFiles/plmutil.dir/proj_image_filter.cxx.o.d -o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -c /<>/src/plastimatch/util/proj_image_filter.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o -MF CMakeFiles/plmutil.dir/plm_series.cxx.o.d -o CMakeFiles/plmutil.dir/plm_series.cxx.o -c /<>/src/plastimatch/util/plm_series.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o -MF CMakeFiles/plmutil.dir/plm_study.cxx.o.d -o CMakeFiles/plmutil.dir/plm_study.cxx.o -c /<>/src/plastimatch/util/plm_study.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -MF CMakeFiles/plmutil.dir/rt_study_warp.cxx.o.d -o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -c /<>/src/plastimatch/util/rt_study_warp.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o -MF CMakeFiles/plmutil.dir/sift.cxx.o.d -o CMakeFiles/plmutil.dir/sift.cxx.o -c /<>/src/plastimatch/util/sift.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o -MF CMakeFiles/plmutil.dir/simplify_points.cxx.o.d -o CMakeFiles/plmutil.dir/simplify_points.cxx.o -c /<>/src/plastimatch/util/simplify_points.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -MF CMakeFiles/plmutil.dir/ss_img_stats.cxx.o.d -o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -c /<>/src/plastimatch/util/ss_img_stats.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_mha.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -c /<>/src/plastimatch/util/synthetic_mha.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_vf.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -c /<>/src/plastimatch/util/synthetic_vf.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o -MF CMakeFiles/plmutil.dir/threshbox.cxx.o.d -o CMakeFiles/plmutil.dir/threshbox.cxx.o -c /<>/src/plastimatch/util/threshbox.cxx /<>/src/plastimatch/util/threshbox.cxx: In function ‘void do_overlap_fraction(Threshbox_parms*)’: /<>/src/plastimatch/util/threshbox.cxx:257:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fscanf(fp1, "%s", tmpbuf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/util/threshbox.cxx:258:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 258 | fscanf(fp1, "%f %f %f", &phys_max1[0], &phys_max1[1], &phys_max1[2]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/util/threshbox.cxx:266:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 266 | fscanf(fp2, "%s", tmpbuf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/util/threshbox.cxx:267:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 267 | fscanf(fp2, "%f %f %f", &phys_max2[0], &phys_max2[1], &phys_max2[2]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o -MF CMakeFiles/plmutil.dir/volume_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /<>/src/plastimatch/util/volume_adjust.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -MF CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o.d -o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -c /<>/src/plastimatch/util/volume_boundary_type.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o -MF CMakeFiles/plmutil.dir/xf_invert.cxx.o.d -o CMakeFiles/plmutil.dir/xf_invert.cxx.o -c /<>/src/plastimatch/util/xf_invert.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o -MF CMakeFiles/plmutil.dir/zcrop.cxx.o.d -o CMakeFiles/plmutil.dir/zcrop.cxx.o -c /<>/src/plastimatch/util/zcrop.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o -MF CMakeFiles/plmutil.dir/gabor.cxx.o.d -o CMakeFiles/plmutil.dir/gabor.cxx.o -c /<>/src/plastimatch/util/gabor.cxx [ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/src/plastimatch/util -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o -MF CMakeFiles/plmutil.dir/ramp_filter.cxx.o.d -o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -c /<>/src/plastimatch/util/ramp_filter.cxx [ 51%] Linking CXX shared library ../../../libplmutil.so cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmutil.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -flto=auto 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../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lblas -llapack -lsqlite3 -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb 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/usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 -lz -ljpeg /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -ldl /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a cd /<>/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_symlink_library ../../../libplmutil.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmutil.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target plmutil make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/reconstruct /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/dose /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/dose /<>/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/register /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/register /<>/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o [ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -MF CMakeFiles/plmdose.dir/beam_calc.cxx.o.d -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /<>/src/plastimatch/dose/beam_calc.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/src/plastimatch/reconstruct -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -MF CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o.d -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /<>/src/plastimatch/reconstruct/bowtie_correction.cxx [ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -MF CMakeFiles/plmdose.dir/beam_map.cxx.o.d -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /<>/src/plastimatch/dose/beam_map.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -MF CMakeFiles/plmregister.dir/bspline.cxx.o.d -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /<>/src/plastimatch/register/bspline.cxx [ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o -MF CMakeFiles/plmdose.dir/bragg_curve.cxx.o.d -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /<>/src/plastimatch/dose/bragg_curve.cxx [ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -MF CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /<>/src/plastimatch/register/bspline_landmarks.cxx [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/src/plastimatch/reconstruct -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /<>/src/plastimatch/reconstruct/drr.cxx [ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -MF CMakeFiles/plmregister.dir/bspline_gm.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /<>/src/plastimatch/register/bspline_gm.cxx [ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mi.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /<>/src/plastimatch/register/bspline_mi.cxx [ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mse.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /<>/src/plastimatch/register/bspline_mse.cxx /<>/src/plastimatch/dose/beam_calc.cxx: In member function ‘bool Beam_calc::load(const char*)’: /<>/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 194 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/src/plastimatch/reconstruct -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_options.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /<>/src/plastimatch/reconstruct/drr_options.cxx [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/src/plastimatch/reconstruct -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /<>/src/plastimatch/reconstruct/drr_trilin.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -MF CMakeFiles/plmdose.dir/compute_dose.cxx.o.d -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /<>/src/plastimatch/dose/compute_dose.cxx [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /<>/src/plastimatch/register/bspline_optimize.cxx [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /<>/src/plastimatch/register/bspline_optimize_lbfgsb.cxx [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/src/plastimatch/reconstruct -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /<>/src/plastimatch/reconstruct/fdk.cxx [ 55%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /<>/src/plastimatch/register/bspline_optimize_liblbfgs.cxx [ 55%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /<>/src/plastimatch/register/bspline_optimize_nlopt.cxx [ 55%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/src/plastimatch/reconstruct -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /<>/src/plastimatch/reconstruct/fdk_util.cxx [ 55%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /<>/src/plastimatch/register/bspline_optimize_steepest.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -MF CMakeFiles/plmregister.dir/bspline_parms.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /<>/src/plastimatch/register/bspline_parms.cxx [ 57%] Linking CXX shared library ../../../libplmreconstruct.so cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o -MF CMakeFiles/plmregister.dir/bspline_score.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /<>/src/plastimatch/register/bspline_score.cxx [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -MF CMakeFiles/plmregister.dir/bspline_stage.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /<>/src/plastimatch/register/bspline_stage.cxx [ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -MF CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o.d -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /<>/src/plastimatch/dose/dose_volume_functions.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 58%] Built target plmreconstruct [ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -MF CMakeFiles/plmdose.dir/particle_type.cxx.o.d -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /<>/src/plastimatch/dose/particle_type.cxx [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -MF CMakeFiles/plmregister.dir/bspline_state.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /<>/src/plastimatch/register/bspline_state.cxx [ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -MF CMakeFiles/plmdose.dir/rt_beam_model.cxx.o.d -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /<>/src/plastimatch/dose/rt_beam_model.cxx [ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -MF CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o.d -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /<>/src/plastimatch/dose/rt_depth_dose.cxx /<>/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load(const char*)’: /<>/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 64 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load_xio(const char*)’: /<>/src/plastimatch/dose/rt_depth_dose.cxx:86:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/dose/rt_depth_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/dose/rt_depth_dose.cxx:103:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 103 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/dose/rt_depth_dose.cxx:114:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 114 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 125 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /<>/src/plastimatch/register/bspline_regularize.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -MF CMakeFiles/plmdose.dir/rt_dij.cxx.o.d -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /<>/src/plastimatch/dose/rt_dij.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /<>/src/plastimatch/register/bspline_regularize_analytic.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -MF CMakeFiles/plmdose.dir/rt_lut.cxx.o.d -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /<>/src/plastimatch/dose/rt_lut.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /<>/src/plastimatch/register/bspline_regularize_numeric.cxx /<>/src/plastimatch/dose/rt_dij.cxx: In member function ‘void Rt_dij::dump(const std::string&) const’: /<>/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 51 | fprintf (fp, "%d %f\n", c->index, c->dose); | ~^ ~~~~~~~~ | | | | int long unsigned int | %ld [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /<>/src/plastimatch/register/bspline_regularize_semi_analytic.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -MF CMakeFiles/plmdose.dir/rt_spot_map.cxx.o.d -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /<>/src/plastimatch/dose/rt_spot_map.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o -MF CMakeFiles/plmregister.dir/demons.cxx.o.d -o CMakeFiles/plmregister.dir/demons.cxx.o -c /<>/src/plastimatch/register/demons.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -MF CMakeFiles/plmregister.dir/demons_cpu.cxx.o.d -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /<>/src/plastimatch/register/demons_cpu.cxx [ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -MF CMakeFiles/plmdose.dir/rt_mebs.cxx.o.d -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /<>/src/plastimatch/dose/rt_mebs.cxx [ 62%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o -MF CMakeFiles/plmdose.dir/rt_parms.cxx.o.d -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /<>/src/plastimatch/dose/rt_parms.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o -MF CMakeFiles/plmregister.dir/demons_state.cxx.o.d -o CMakeFiles/plmregister.dir/demons_state.cxx.o -c /<>/src/plastimatch/register/demons_state.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -MF CMakeFiles/plmregister.dir/gpuit_demons.cxx.o.d -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /<>/src/plastimatch/register/gpuit_demons.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -MF CMakeFiles/plmregister.dir/groupwise_parms.cxx.o.d -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /<>/src/plastimatch/register/groupwise_parms.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o -MF CMakeFiles/plmregister.dir/histogram.cxx.o.d -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /<>/src/plastimatch/register/histogram.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o -MF CMakeFiles/plmregister.dir/itk_align_center.cxx.o.d -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /<>/src/plastimatch/register/itk_align_center.cxx /<>/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::load_beamlet_map(Aperture::Pointer&)’: /<>/src/plastimatch/dose/rt_mebs.cxx:1129:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1129 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/rt_mebs.cxx:1180:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1180 | printf("line %d: beamlet number expected: %d, beamlet number detected: %d.\n", line_number, ap->get_dim(0), beamlet_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/rt_mebs.cxx:1189:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1189 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::compute_particle_number_matrix_from_target_active(Rpl_volume*, std::vector&, std::vector&)’: /<>/src/plastimatch/dose/rt_mebs.cxx:1213:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1213 | printf("Aperture size: %d, min depth map size: %d, max depth map size: %d.\n", rpl_vol->get_aperture()->get_dim(0) * rpl_vol->get_aperture()->get_dim(1), (int) wepl_min.size(), (int) wepl_max.size()); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::export_as_txt(const std::string&, Aperture::Pointer)’: /<>/src/plastimatch/dose/rt_mebs.cxx:1385:18: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1385 | printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1)); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/rt_mebs.cxx:1385:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1385 | printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1)); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld [ 63%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -MF CMakeFiles/plmdose.dir/plan_calc.cxx.o.d -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /<>/src/plastimatch/dose/plan_calc.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /<>/src/plastimatch/register/itk_demons.cxx [ 63%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -MF CMakeFiles/plmdose.dir/rt_sigma.cxx.o.d -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /<>/src/plastimatch/dose/rt_sigma.cxx /<>/src/plastimatch/dose/plan_calc.cxx: In member function ‘void Plan_calc::normalize_beam_dose(Beam_calc*)’: /<>/src/plastimatch/dose/plan_calc.cxx:424:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/plan_calc.cxx:424:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/plan_calc.cxx:438:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 438 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/plan_calc.cxx:438:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 438 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/plan_calc.cxx:452:44: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 452 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/plan_calc.cxx:452:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 452 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/src/plastimatch/dose/plan_calc.cxx: In member function ‘void Plan_calc::print_verif()’: /<>/src/plastimatch/dose/plan_calc.cxx:759:73: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld /<>/src/plastimatch/dose/plan_calc.cxx:759:76: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons_util.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /<>/src/plastimatch/register/itk_demons_util.cxx [ 65%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/src/plastimatch/dose -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -MF CMakeFiles/plmdose.dir/wed_parms.cxx.o.d -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /<>/src/plastimatch/dose/wed_parms.cxx /<>/src/plastimatch/dose/wed_parms.cxx: In member function ‘int Wed_parms::set_key_val(const char*, const char*, int)’: /<>/src/plastimatch/dose/wed_parms.cxx:237:32: warning: format ‘%i’ expects argument of type ‘int*’, but argument 3 has type ‘plm_long*’ {aka ‘long int*’} [-Wformat=] 237 | if (sscanf (val, "%i %i", | ~^ | | | int* | %li 238 | &(this->ires[0]), | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} /<>/src/plastimatch/dose/wed_parms.cxx:237:35: warning: format ‘%i’ expects argument of type ‘int*’, but argument 4 has type ‘plm_long*’ {aka ‘long int*’} [-Wformat=] 237 | if (sscanf (val, "%i %i", | ~^ | | | int* | %li 238 | &(this->ires[0]), 239 | &(this->ires[1])) != 2) | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /<>/src/plastimatch/register/itk_diff_demons.cxx [ 65%] Linking CXX shared library ../../../libplmdose.so cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /<>/src/plastimatch/register/itk_fsf_demons.cxx In file included from /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /<>/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:22, from /<>/src/plastimatch/register/itk_diff_demons.h:7, from /<>/src/plastimatch/register/itk_diff_demons.cxx:5: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of ‘itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]’: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /usr/include/ITK-5.2/itkDataObject.h:31, from /usr/include/ITK-5.2/itkProcessObject.h:31, from /usr/include/ITK-5.2/itkImageSource.h:31, from /usr/include/ITK-5.2/itkImageToImageFilter.h:31, from /usr/include/ITK-5.2/itkInPlaceImageFilter.h:31, from /usr/include/ITK-5.2/itkFiniteDifferenceImageFilter.h:21, from /usr/include/ITK-5.2/itkDenseFiniteDifferenceImageFilter.h:21, from /<>/libs/demons_itk_insight/itkPDEDeformableRegistrationWithMaskFilter.h:20, from /<>/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:21: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ cd /<>/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target plmdose [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /<>/src/plastimatch/register/itk_log_demons.cxx In file included from /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /<>/libs/demons_itk_insight/FastSymmetricForces/itkFastSymmetricForcesDemonsRegistrationWithMaskFilter.h:22, from /<>/src/plastimatch/register/itk_fsf_demons.h:7, from /<>/src/plastimatch/register/itk_fsf_demons.cxx:12: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of ‘itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]’: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkArray.h:21, from /<>/src/plastimatch/register/itk_fsf_demons.cxx:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ In file included from /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /<>/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, from /<>/src/plastimatch/register/itk_demons_types.h:14, from /<>/src/plastimatch/register/itk_log_demons.h:8, from /<>/src/plastimatch/register/itk_log_demons.cxx:5: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of ‘itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]’: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /usr/include/ITK-5.2/itkRegion.h:31, from /usr/include/ITK-5.2/itkImageRegion.h:31, from /usr/include/ITK-5.2/itkImage.h:21, from /<>/src/plastimatch/base/itk_image_type.h:14, from /<>/src/plastimatch/register/itk_demons_types.h:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /<>/src/plastimatch/register/itk_sym_log_demons.cxx In file included from /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /<>/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, from /<>/src/plastimatch/register/itk_demons_types.h:14, from /<>/src/plastimatch/register/itk_sym_log_demons.h:8, from /<>/src/plastimatch/register/itk_sym_log_demons.cxx:6: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of ‘itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]’: /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /usr/include/ITK-5.2/itkRegion.h:31, from /usr/include/ITK-5.2/itkImageRegion.h:31, from /usr/include/ITK-5.2/itkImage.h:21, from /<>/src/plastimatch/base/itk_image_type.h:14, from /<>/src/plastimatch/register/itk_demons_types.h:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /<>/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: ‘bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]’ is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -MF CMakeFiles/plmregister.dir/itk_optimizer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /<>/src/plastimatch/register/itk_optimizer.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /<>/src/plastimatch/register/itk_registration.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /<>/src/plastimatch/register/itk_registration_observer.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o -MF CMakeFiles/plmregister.dir/itk_tps.cxx.o.d -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /<>/src/plastimatch/register/itk_tps.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o -MF CMakeFiles/plmregister.dir/joint_histogram.cxx.o.d -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /<>/src/plastimatch/register/joint_histogram.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o -MF CMakeFiles/plmregister.dir/landmark_warp.cxx.o.d -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /<>/src/plastimatch/register/landmark_warp.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o -MF CMakeFiles/plmregister.dir/metric_parms.cxx.o.d -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /<>/src/plastimatch/register/metric_parms.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o -MF CMakeFiles/plmregister.dir/metric_state.cxx.o.d -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /<>/src/plastimatch/register/metric_state.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o -MF CMakeFiles/plmregister.dir/process_parms.cxx.o.d -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /<>/src/plastimatch/register/process_parms.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -MF CMakeFiles/plmregister.dir/rbf_cluster.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /<>/src/plastimatch/register/rbf_cluster.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -MF CMakeFiles/plmregister.dir/rbf_gauss.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /<>/src/plastimatch/register/rbf_gauss.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -MF CMakeFiles/plmregister.dir/rbf_wendland.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /<>/src/plastimatch/register/rbf_wendland.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -MF CMakeFiles/plmregister.dir/registration.cxx.o.d -o CMakeFiles/plmregister.dir/registration.cxx.o -c /<>/src/plastimatch/register/registration.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -MF CMakeFiles/plmregister.dir/registration_data.cxx.o.d -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /<>/src/plastimatch/register/registration_data.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o -MF CMakeFiles/plmregister.dir/registration_parms.cxx.o.d -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /<>/src/plastimatch/register/registration_parms.cxx /<>/src/plastimatch/register/registration.cxx: In function ‘void* registration_main_thread(void*)’: /<>/src/plastimatch/register/registration.cxx:597:51: warning: ‘ThreadInfoStruct’ is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] 597 | itk::PlatformMultiThreader::ThreadInfoStruct *info | ^~~~ In file included from /usr/include/ITK-5.2/itkPlatformMultiThreader.h:31, from /<>/src/plastimatch/register/registration.cxx:9: /usr/include/ITK-5.2/itkMultiThreaderBase.h:250:93: note: declared here 250 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/register/registration.cxx:598:56: warning: ‘ThreadInfoStruct’ is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] 598 | = (itk::PlatformMultiThreader::ThreadInfoStruct*) param; | ^ /usr/include/ITK-5.2/itkMultiThreaderBase.h:250:93: note: declared here 250 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct | ^~~~~~~~~~~~~~~~ /<>/src/plastimatch/register/registration.cxx: In member function ‘void Registration::start_registration()’: /<>/src/plastimatch/register/registration.cxx:623:53: warning: ‘itk::ThreadIdType itk::PlatformMultiThreader::SpawnThread(itk::ThreadFunctionType, void*)’ is deprecated [-Wdeprecated-declarations] 623 | d_ptr->thread_no = d_ptr->threader->SpawnThread ( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 624 | registration_main_thread, (void*) this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkIntTypes.h:21, from /usr/include/ITK-5.2/itkSize.h:21, from /usr/include/ITK-5.2/itkOffset.h:21, from /usr/include/ITK-5.2/itkIndex.h:21, from /usr/include/ITK-5.2/itkImageConstIteratorWithIndex.h:21, from /usr/include/ITK-5.2/itkImageRegionConstIteratorWithIndex.h:21, from /<>/src/plastimatch/register/registration.cxx:7: /usr/include/ITK-5.2/itkPlatformMultiThreader.h:137:3: note: declared here 137 | itkLegacyMacro(ThreadIdType SpawnThread(ThreadFunctionType, void * data)); | ^~~~~~~~~~~~~~ [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o -MF CMakeFiles/plmregister.dir/registration_resample.cxx.o.d -o CMakeFiles/plmregister.dir/registration_resample.cxx.o -c /<>/src/plastimatch/register/registration_resample.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o -MF CMakeFiles/plmregister.dir/registration_util.cxx.o.d -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /<>/src/plastimatch/register/registration_util.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o -MF CMakeFiles/plmregister.dir/shared_parms.cxx.o.d -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /<>/src/plastimatch/register/shared_parms.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -MF CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o.d -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /<>/src/plastimatch/register/similarity_metric_type.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -MF CMakeFiles/plmregister.dir/stage_parms.cxx.o.d -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /<>/src/plastimatch/register/stage_parms.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -MF CMakeFiles/plmregister.dir/translation_grid_search.cxx.o.d -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /<>/src/plastimatch/register/translation_grid_search.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/src/plastimatch/register -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type 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/usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a cd /<>/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_symlink_library ../../../libplmregister.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmregister.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target plmregister make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/segment /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/segment /<>/obj-x86_64-linux-gnu/src/plastimatch/segment/CMakeFiles/plmsegment.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /<>/src/plastimatch/segment/autolabel_feature.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /<>/src/plastimatch/segment/autolabel_ransac_est.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /<>/src/plastimatch/segment/autolabel.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /<>/src/plastimatch/segment/autolabel_parms.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_task.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /<>/src/plastimatch/segment/autolabel_task.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /<>/src/plastimatch/segment/autolabel_thumbnailer.cxx In file included from /<>/libs/ransac/RANSAC.h:188, from /<>/src/plastimatch/segment/autolabel_ransac_est.cxx:13: /<>/libs/ransac/RANSAC.txx: In member function ‘void itk::RANSAC::SetNumberOfThreads(unsigned int)’: /<>/libs/ransac/RANSAC.txx:26:84: warning: ‘static itk::ThreadIdType itk::PlatformMultiThreader::GetGlobalDefaultNumberOfThreads()’ is deprecated [-Wdeprecated-declarations] 26 | numberOfThreads>itk::PlatformMultiThreader::GetGlobalDefaultNumberOfThreads() ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /<>/libs/ransac/ParametersEstimator.h:5, from /<>/src/plastimatch/segment/autolabel_ransac_est.h:8, from /<>/src/plastimatch/segment/autolabel_ransac_est.cxx:12: /usr/include/ITK-5.2/itkPlatformMultiThreader.h:99:3: note: declared here 99 | itkLegacyMacro(static ThreadIdType GetGlobalDefaultNumberOfThreads()) | ^~~~~~~~~~~~~~ /<>/libs/ransac/RANSAC.txx: In static member function ‘static void* itk::RANSAC::RANSACThreadCallback(void*)’: /<>/libs/ransac/RANSAC.txx:160:58: warning: ‘ThreadInfoStruct’ is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] 160 | typedef itk::PlatformMultiThreader::ThreadInfoStruct ThreadInfoType; | ^~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkPlatformMultiThreader.h:31, from /<>/libs/ransac/RANSAC.h:13: /usr/include/ITK-5.2/itkMultiThreaderBase.h:250:93: note: declared here 250 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct | ^~~~~~~~~~~~~~~~ /<>/libs/ransac/RANSAC.txx: In instantiation of ‘double itk::RANSAC::Compute(std::vector&, double) [with T = itk::Point; S = double]’: /<>/src/plastimatch/segment/autolabel_ransac_est.cxx:248:54: required from here /<>/libs/ransac/RANSAC.txx:114:33: warning: ‘virtual void itk::MultiThreaderBase::SetNumberOfThreads(itk::ThreadIdType)’ is deprecated [-Wdeprecated-declarations] 114 | threader->SetNumberOfThreads( this->numberOfThreads ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ITK-5.2/itkMultiThreaderBase.h:224:3: note: declared here 224 | itkLegacyMacro(virtual void SetNumberOfThreads(ThreadIdType numberOfThreads)) | ^~~~~~~~~~~~~~ /<>/libs/ransac/RANSAC.txx:114:33: warning: ‘virtual void itk::MultiThreaderBase::SetNumberOfThreads(itk::ThreadIdType)’ is deprecated [-Wdeprecated-declarations] 114 | threader->SetNumberOfThreads( this->numberOfThreads ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ITK-5.2/itkMultiThreaderBase.h:224:3: note: declared here 224 | itkLegacyMacro(virtual void SetNumberOfThreads(ThreadIdType numberOfThreads)) | ^~~~~~~~~~~~~~ [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /<>/src/plastimatch/segment/autolabel_trainer.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /<>/src/plastimatch/segment/dlib_trainer.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -MF CMakeFiles/plmsegment.dir/mabs.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /<>/src/plastimatch/segment/mabs.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /<>/src/plastimatch/segment/mabs_atlas_selection.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /<>/src/plastimatch/segment/mabs_parms.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /<>/src/plastimatch/segment/mabs_seg_weights.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_stats.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /<>/src/plastimatch/segment/mabs_stats.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_staple.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /<>/src/plastimatch/segment/mabs_staple.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -fopenmp -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_vote.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /<>/src/plastimatch/segment/mabs_vote.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o -MF CMakeFiles/plmsegment.dir/ml_convert.cxx.o.d -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /<>/src/plastimatch/segment/ml_convert.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/src/plastimatch/segment -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o -MF CMakeFiles/plmsegment.dir/segment_body.cxx.o.d -o CMakeFiles/plmsegment.dir/segment_body.cxx.o -c /<>/src/plastimatch/segment/segment_body.cxx [ 77%] Linking CXX shared library ../../../libplmsegment.so cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsegment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmsegment.so.1.9 -o ../../../libplmsegment.so.1.9 CMakeFiles/plmsegment.dir/autolabel.cxx.o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o CMakeFiles/plmsegment.dir/mabs.cxx.o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o CMakeFiles/plmsegment.dir/ml_convert.cxx.o CMakeFiles/plmsegment.dir/segment_body.cxx.o -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../../../libplmregister.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 -lfftw3f -lfftw3 ../../../libdevillard.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 ../../../liblbfgs.a In member function ‘allocate_array’, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix_data_layout.h:335:43, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix.h:1395:30, inlined from ‘operator=’ at /usr/include/dlib/matrix/matrix.h:1694:25, inlined from ‘operator=’ at /usr/include/dlib/svm/function.h:27:12, inlined from ‘train_krr’ at ./src/plastimatch/segment/dlib_trainer.cxx:229:24: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘train_krr’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘allocate_array’, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix_data_layout.h:335:43, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix.h:1440:34, inlined from ‘do_train’ at /usr/include/dlib/svm/rr_trainer.h:291:28: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘do_train’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cd /<>/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsegment.so.1.9 ../../../libplmsegment.so.1.9 ../../../libplmsegment.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target plmsegment make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/cli /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/cli /<>/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o [ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o [ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o [ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -MF CMakeFiles/compute_distance.dir/compute_distance.cxx.o.d -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /<>/src/plastimatch/standalone/compute_distance.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -MF CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o.d -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /<>/src/plastimatch/standalone/landmark_diff_main.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_add.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /<>/src/plastimatch/cli/pcmd_add.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -MF CMakeFiles/dicom_info.dir/dicom_info.cxx.o.d -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /<>/src/plastimatch/standalone/dicom_info.cxx [ 78%] Linking CXX executable ../../../landmark_diff cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone 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/usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target landmark_diff make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -MF CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o.d -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c 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-I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -MF CMakeFiles/compute_distance.dir/read_obj.cxx.o.d -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /<>/src/plastimatch/standalone/read_obj.cxx [ 79%] Linking CXX executable ../../../compute_distance cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects 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-ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 80%] Linking CXX executable ../../../dicom_info cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 81%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /<>/src/plastimatch/cli/pcmd_adjust.cxx make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target compute_distance make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -MF CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o.d -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /<>/src/plastimatch/standalone/shuffle_mha_main.cxx [ 82%] Linking CXX executable ../../../merge_vfs cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 82%] Linking CXX executable ../../../shuffle_mha cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target dicom_info [ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /<>/src/plastimatch/cli/pcmd_autolabel_train.cxx make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target shuffle_mha make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -MF CMakeFiles/wed.dir/wed_main.cxx.o.d -o CMakeFiles/wed.dir/wed_main.cxx.o -c /<>/src/plastimatch/standalone/wed_main.cxx [ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /<>/src/plastimatch/cli/pcmd_autolabel.cxx make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target merge_vfs make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -MF CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o.d -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /<>/src/plastimatch/standalone/xvi_archive.cxx [ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /<>/src/plastimatch/cli/pcmd_bbox.cxx [ 83%] Linking CXX executable ../../../wed cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a 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/usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target wed make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -MF CMakeFiles/check_grad.dir/check_grad.cxx.o.d -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /<>/src/plastimatch/standalone/check_grad.cxx [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /<>/src/plastimatch/cli/pcmd_benchmark.cxx [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /<>/src/plastimatch/cli/pcmd_boundary.cxx [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /<>/src/plastimatch/cli/pcmd_compare.cxx [ 85%] Linking CXX executable ../../../check_grad cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet 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-ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 86%] Linking CXX executable ../../../xvi_archive cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun 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../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 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/usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 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'/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -MF CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o.d -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /<>/src/plastimatch/standalone/hnd_to_pfm.cxx [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o [ 88%] Linking CXX executable ../../../hnd_to_pfm cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ 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/usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /<>/src/plastimatch/cli/pcmd_crop.cxx cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 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/usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target hnd_to_pfm make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /<>/src/plastimatch/standalone/bragg_curve_main.cxx [ 88%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /<>/src/plastimatch/standalone/bragg_curve_opts.cxx [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /<>/src/plastimatch/cli/pcmd_dice.cxx [ 88%] Linking CXX executable ../../../bragg_curve cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 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/usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target bragg_curve make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -MF CMakeFiles/sobp.dir/sobp_main.cxx.o.d -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /<>/src/plastimatch/standalone/sobp_main.cxx [ 89%] Linking CXX executable ../../../sobp cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target sobp make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/src/plastimatch/standalone -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/cli -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/inih-r29 -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -MF CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o.d -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /<>/src/plastimatch/standalone/dicom_uid_main.cxx [ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /<>/src/plastimatch/cli/pcmd_diff.cxx [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /<>/src/plastimatch/cli/pcmd_dmap.cxx [ 90%] Linking CXX executable ../../../dicom_uid cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /<>/src/plastimatch/cli/pcmd_dose.cxx make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 90%] Built target dicom_uid [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /<>/src/plastimatch/cli/pcmd_drr.cxx [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /<>/src/plastimatch/cli/pcmd_dvh.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /<>/src/plastimatch/cli/pcmd_fdk.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /<>/src/plastimatch/cli/pcmd_filter.cxx /<>/src/plastimatch/cli/pcmd_fdk.cxx: In function ‘void set_default_parms(Fdk_parms*)’: /<>/src/plastimatch/cli/pcmd_fdk.cxx:40:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 40 | parms->Full_normCBCT_name="Full_norm.mh5"; | ^~~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_fdk.cxx:42:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 42 | parms->Half_normCBCT_name="Half_norm.mh5"; | ^~~~~~~~~~~~~~~ [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /<>/src/plastimatch/cli/pcmd_gamma.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_header.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /<>/src/plastimatch/cli/pcmd_header.cxx [ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -c /<>/src/plastimatch/cli/pcmd_intersect.cxx [ 93%] Linking CXX executable ../../../dlib_train cd /<>/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train -L/<>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/obj-x86_64-linux-gnu/libs/specfun -L/<>/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lcrypto -lcurl -lsz -Wl,-Bstatic -ldl -Wl,-Bdynamic -lm -lrt -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.13 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.13 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 In member function ‘allocate_array’, inlined from ‘set_max_size’ at /usr/include/dlib/array/array_kernel.h:438:59: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘set_max_size’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /<>/src/plastimatch/cli/pcmd_jacobian.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -c /<>/src/plastimatch/cli/pcmd_lm_warp.cxx In member function ‘allocate_array’, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix_data_layout.h:335:43, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix.h:1440:34, inlined from ‘do_train’ at /usr/include/dlib/svm/svm_c_trainer.h:247:37: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘do_train’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘allocate_array’, inlined from ‘set_max_size’ at /usr/include/dlib/array/array_kernel.h:438:59, inlined from ‘resize’ at /usr/include/dlib/array/array_kernel.h:654:30: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘resize’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘allocate_array’, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix_data_layout.h:335:43, inlined from ‘__ct ’ at /usr/include/dlib/matrix/matrix.h:1118:26, inlined from ‘convert_to_decision_function’ at /usr/include/dlib/svm/empirical_kernel_map.h:153:93, inlined from ‘do_train.constprop’ at /usr/include/dlib/svm/krr_trainer.h:321:16: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘do_train.constprop’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘allocate_array’, inlined from ‘set_max_size’ at /usr/include/dlib/array/array_kernel.h:438:59, inlined from ‘init’ at /usr/include/dlib/matrix/symmetric_matrix_cache.h:131:35, inlined from ‘diag’ at /usr/include/dlib/matrix/symmetric_matrix_cache.h:96:40, inlined from ‘diag’ at /usr/include/dlib/matrix/symmetric_matrix_cache.h:354:30, inlined from ‘find_working_group’ at /usr/include/dlib/optimization/optimization_solve_qp3_using_smo.h:266:23, inlined from ‘operator()’ at /usr/include/dlib/optimization/optimization_solve_qp3_using_smo.h:113:38, inlined from ‘do_train’ at /usr/include/dlib/svm/svm_c_trainer.h:226:19: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘do_train’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘allocate_array’, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix_data_layout.h:335:43, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix.h:1440:34, inlined from ‘do_train’ at /usr/include/dlib/svm/svm_c_trainer.h:247:37: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘do_train’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /<>/src/plastimatch/cli/pcmd_mabs.cxx In member function ‘allocate_array’, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix_data_layout.h:335:43, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix.h:1440:34, inlined from ‘do_train’ at /usr/include/dlib/svm/rr_trainer.h:291:28: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘do_train’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘allocate_array’, inlined from ‘set_size’ at /usr/include/dlib/matrix/matrix_data_layout.h:335:43, inlined from ‘__ct ’ at /usr/include/dlib/matrix/matrix.h:1118:26, inlined from ‘convert_to_decision_function’ at /usr/include/dlib/svm/empirical_kernel_map.h:153:93, inlined from ‘do_train.constprop’ at /usr/include/dlib/svm/krr_trainer.h:321:16: /usr/include/dlib/memory_manager_stateless/memory_manager_stateless_kernel_1.h:54:24: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | return new T[size]; | ^ /usr/include/c++/12/new: In member function ‘do_train.constprop’: /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target dlib_train [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /<>/src/plastimatch/cli/pcmd_mask.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /<>/src/plastimatch/cli/pcmd_maximum.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /<>/src/plastimatch/cli/pcmd_ml_convert.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /<>/src/plastimatch/cli/pcmd_multiply.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /<>/src/plastimatch/cli/pcmd_probe.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_register.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -c /<>/src/plastimatch/cli/pcmd_register.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -c /<>/src/plastimatch/cli/pcmd_resample.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -c /<>/src/plastimatch/cli/pcmd_scale.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /<>/src/plastimatch/cli/pcmd_segment.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -c /<>/src/plastimatch/cli/pcmd_sift.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -c /<>/src/plastimatch/cli/pcmd_stats.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -c /<>/src/plastimatch/cli/pcmd_synth.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -c /<>/src/plastimatch/cli/pcmd_synth_vf.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -c /<>/src/plastimatch/cli/pcmd_threshold.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -c /<>/src/plastimatch/cli/pcmd_thumbnail.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_union.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -c /<>/src/plastimatch/cli/pcmd_union.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -c /<>/src/plastimatch/cli/pcmd_warp.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -c /<>/src/plastimatch/cli/pcmd_warp_dij.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /<>/src/plastimatch/cli/pcmd_warp_pointset.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -c /<>/src/plastimatch/cli/pcmd_wed.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function ‘void do_command_xio_dvh(int, char**)’: /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets(buf, 200, fp); //XiO Dose Volume Histogram | ~~~~~^~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:49:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 49 | fgets(patientid, 200, fp); // patient ID, abcde1234 | ~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:50:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | fgets(buf, 200, fp); // plan | ~~~~~^~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:51:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 51 | fgets(structurename, 200, fp); // structure name | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:52:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | fgets(buf, 200, fp); // N.NN mm resolution | ~~~~~^~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:54:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fgets(buf, 200, fp); // number of bins | ~~~~~^~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:59:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fgets(buf, 200, fp); // date | ~~~~~^~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:60:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 60 | fgets(buf, 200, fp); // table header: min bin dose (cGy), bin volume (cc) | ~~~~~^~~~~~~~~~~~~~ /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:78:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 78 | fgets(buf, 200, fp); | ~~~~~^~~~~~~~~~~~~~ [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /<>/src/plastimatch/cli/pcmd_xf_convert.cxx /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function ‘do_command_xio_dvh(int, char**) [clone .part.0]’: /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:72:37: warning: ‘%s’ directive writing up to 254 bytes into a region of size 253 [-Wformat-overflow=] 72 | sprintf(outfilename, "%s/%s-%s.txt",output_dir, patientid, structurename); | ^~ ~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:894, from /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:5: In function ‘sprintf’, inlined from ‘do_command_xio_dvh(int, char**) [clone .part.0]’ at /<>/src/plastimatch/cli/pcmd_xio_dvh.cxx:72:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__sprintf_chk’ output 7 or more bytes (assuming 261) into a destination of size 255 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /<>/src/plastimatch/cli/pcmd_xf_invert.cxx [100%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /<>/src/plastimatch/cli/plastimatch_main.cxx [100%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/src/plastimatch/cli -I/<>/obj-x86_64-linux-gnu/src/plastimatch -I/<>/src/plastimatch/util/cuda -I/<>/src/plastimatch/util -I/<>/src/plastimatch/sys -I/<>/src/plastimatch/segment -I/<>/src/plastimatch/register/cuda -I/<>/src/plastimatch/register -I/<>/src/plastimatch/reconstruct/cuda -I/<>/src/plastimatch/reconstruct -I/<>/src/plastimatch/qt -I/<>/src/plastimatch/opencl -I/<>/src/plastimatch/cuda -I/<>/src/plastimatch/dose -I/<>/src/plastimatch/clp -I/<>/src/plastimatch/base -I/<>/src/plastimatch -I/<>/obj-x86_64-linux-gnu -I/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/<>/libs/itk-5.1.0 -I/<>/libs/demons_itk_insight -I/<>/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/libs/demons_itk_insight/FastSymmetricForces -I/<>/libs/demons_itk_insight/LOGDomainDemons -I/<>/libs/nSIFT -I/<>/libs/liblbfgs-1.9/include -I/<>/libs -I/<>/libs/ransac -I/<>/libs/ransac/Common -I/<>/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++17 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /<>/src/plastimatch/cli/plastimatch_startup.cxx [100%] Linking CXX executable ../../../plastimatch cd /<>/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/plastimatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/plastimatch.dir/pcmd_add.cxx.o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o 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/usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -Wl,-Bstatic -lpthread -Wl,-Bdynamic -ldl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target plastimatch make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Add coverage exclude regular expressions. UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /<>/obj-x86_64-linux-gnu Constructing a list of tests Ignore test: demons-cuda-a Ignore test: demons-cuda-a-check Ignore test: drr-d Ignore test: drr-d-stats Ignore test: drr-d-check Ignore test: drr-cuda Ignore test: drr-cuda-stats Ignore test: drr-cuda-check Ignore test: drr-opencl Ignore test: drr-opencl-stats Ignore test: drr-opencl-check Ignore test: fdk-cpu-b Ignore test: fdk-cpu-b-stats Ignore test: fdk-cpu-b-check Ignore test: fdk-cpu-c Ignore test: fdk-cpu-c-stats Ignore test: fdk-cpu-c-check Ignore test: fdk-cuda-a Ignore test: fdk-cuda-a-stats Ignore test: fdk-cuda-a-check Ignore test: fdk-opencl-a Ignore test: fdk-opencl-a-stats Ignore test: fdk-opencl-a-check Ignore test: fdk-tutorial-a Ignore test: fdk-tutorial-b Ignore test: fdk-tutorial-b-stats-1 Ignore test: fdk-tutorial-b-check-1 Ignore test: fdk-tutorial-c Ignore test: fdk-tutorial-c-stats-1 Ignore test: fdk-tutorial-c-check-1 Ignore test: plm-convert-rtog-corvus-a Ignore test: plm-convert-dicom-aw-a Ignore test: plm-convert-dicom-aw-a-stats Ignore test: plm-convert-dicom-aw-a-check Ignore test: plm-convert-dicom-aw-b Ignore test: plm-convert-dicom-corvus-a Ignore test: plm-convert-dicom-pinnacle-a Ignore test: plm-convert-dicom-xio-a Ignore test: plm-convert-dicom-xio-a-stats Ignore test: plm-convert-dicom-xio-a-check Ignore test: plm-convert-dicom-xio-b Ignore test: plm-convert-dicom-xio-b-stats Ignore test: plm-convert-dicom-xio-b-check Ignore test: plm-convert-dicom-xio-c Ignore test: plm-convert-dicom-xio-c-stats Ignore test: plm-convert-dicom-xio-c-check Ignore test: plm-convert-dicom-xio-d Ignore test: plm-convert-dicom-xio-d-stats Ignore test: plm-convert-dicom-xio-d-check Ignore test: plm-convert-dicom-xio-e Ignore test: plm-convert-dicom-xio-f Ignore test: plm-convert-dicom-xio-f-stats Ignore test: plm-convert-dicom-xio-f-check Ignore test: plm-convert-dicom-xio-g Ignore test: plm-warp-dicom-xio-a Ignore test: plm-warp-dicom-xio-a-stats-1 Ignore test: plm-warp-dicom-xio-a-check-1 Ignore test: plm-warp-dicom-xio-a-stats-2 Ignore test: plm-warp-dicom-xio-a-check-2 Ignore test: plm-convert-dicom-irregular-a Ignore test: plm-convert-dicom-33-a Ignore test: plm-convert-dicom-33-a-stats-1 Ignore test: plm-convert-dicom-33-a-stats-2 Ignore test: plm-convert-dicom-33-a-check-1 Ignore test: plm-convert-dicom-33-a-check-2 Ignore test: plm-convert-xio-a Ignore test: plm-convert-xio-a-stats Ignore test: plm-convert-xio-a-check Ignore test: plm-convert-xio-b Ignore test: plm-convert-xio-b-stats Ignore test: plm-convert-xio-b-check Ignore test: plm-warp-xio-a Ignore test: plm-warp-xio-a-stats-1 Ignore test: plm-warp-xio-a-check-1 Ignore test: plm-warp-xio-a-stats-2 Ignore test: plm-warp-xio-a-check-2 Ignore test: plm-warp-xio-a-stats-3 Ignore test: plm-warp-xio-a-check-3 Ignore test: plm-warp-xio-a-stats-4 Ignore test: plm-warp-xio-a-check-4 Ignore test: plm-warp-xio-a-check-5 Ignore test: plm-warp-xio-a-check-6 Ignore test: plm-reg-itk-rigid-b Ignore test: plm-reg-itk-rigid-b-stats-1 Ignore test: plm-reg-itk-rigid-b-check-1 Ignore test: plm-bsp-cuda Ignore test: plm-bsp-cuda-stats Ignore test: plm-bsp-cuda-check Ignore test: bragg-curve Ignore test: bragg-curve-check Ignore test: proton-dose-7a Ignore test: proton-dose-8d-check Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 10 Start 10: gauss-1 10: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 10: Test timeout computed to be: 1500 test 11 Start 11: gauss-2 11: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 11: Test timeout computed to be: 1500 test 12 Start 12: gauss-3 12: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-3" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 12: Test timeout computed to be: 1500 test 14 Start 14: gauss-5 14: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-5" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 14: Test timeout computed to be: 1500 10: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 10: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 10: EXPECTED_ERRNO is 11: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 11: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 11: EXPECTED_ERRNO is 14: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 14: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10 14: EXPECTED_ERRNO is 12: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 12: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10 12: EXPECTED_ERRNO is 11: RETVAL: 0 11: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 11: 11: STDERR: 11: Not an error 1/571 Test #11: gauss-2 ............................... Passed 0.05 sec test 28 Start 28: rect-1 28: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000" "-P" "/<>/cmake/RUN_CTEST.cmake" 28: Test timeout computed to be: 1500 10: RETVAL: 0 10: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 10: 10: STDERR: 10: Not an error 14: RETVAL: 0 14: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha 14: 14: STDERR: 14: Not an error 12: RETVAL: 0 12: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha 12: 12: STDERR: 2/571 Test #10: gauss-1 ............................... Passed 0.06 sec test 1 Start 1: black-1 1: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=black-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000" "-P" "/<>/cmake/RUN_CTEST.cmake" 1: Test timeout computed to be: 1500 3/571 Test #14: gauss-5 ............................... Passed 0.06 sec test 2 Start 2: cyl-1 2: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10" "-P" "/<>/cmake/RUN_CTEST.cmake" 2: Test timeout computed to be: 1500 12: Not an error 4/571 Test #12: gauss-3 ............................... Passed 0.06 sec test 3 Start 3: cyl-mask-2 3: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-mask-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45" "-P" "/<>/cmake/RUN_CTEST.cmake" 3: Test timeout computed to be: 1500 28: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 28: PARMS is synth;--filenames-without-uids;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000 28: EXPECTED_ERRNO is 1: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 1: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000 1: EXPECTED_ERRNO is 2: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 2: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10 2: EXPECTED_ERRNO is 3: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 3: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45 3: EXPECTED_ERRNO is 1: RETVAL: 0 1: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/black-1.mha 1: 2: RETVAL: 0 2: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd 2: 2: STDERR: 1: STDERR: 2: Not an error 1: Not an error 5/571 Test #1: black-1 ............................... Passed 0.06 sec test 5 Start 5: cyl-mask-3 5: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-mask-3" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40" "-P" "/<>/cmake/RUN_CTEST.cmake" 5: Test timeout computed to be: 1500 6/571 Test #2: cyl-1 ................................. Passed 0.06 sec test 7 Start 7: donut-1 7: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=donut-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/donut-1-prefix/" "-P" "/<>/cmake/RUN_CTEST.cmake" 7: Test timeout computed to be: 1500 5: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 5: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40 5: EXPECTED_ERRNO is 3: RETVAL: 0 3: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd 3: 3: STDERR: 3: Not an error 7/571 Test #3: cyl-mask-2 ............................ Passed 0.06 sec test 8 Start 8: donut-2 8: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=donut-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1" "-P" "/<>/cmake/RUN_CTEST.cmake" 8: Test timeout computed to be: 1500 7: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 7: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/donut-1-prefix/ 7: EXPECTED_ERRNO is 8: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 8: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1 8: EXPECTED_ERRNO is 28: RETVAL: 0 28: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-1.mha 28: Converting from ITK_UCHAR to ITK_UCHAR_VEC 28: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha 28: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha 28: save_ss_img: save_ss_list 28: Done. 28: Doing extraction 28: Keyholizing structure 0. 28: Write: DoseGridScaling = 0.000000 28: 28: STDERR: 28: Not an error 8/571 Test #28: rect-1 ................................ Passed 0.09 sec test 9 Start 9: gabor-01 9: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gabor-01" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1" "-P" "/<>/cmake/RUN_CTEST.cmake" 9: Test timeout computed to be: 1500 9: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 9: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1 9: EXPECTED_ERRNO is 5: RETVAL: 0 5: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd 5: 5: STDERR: 5: Not an error 9/571 Test #5: cyl-mask-3 ............................ Passed 0.06 sec test 13 Start 13: gauss-4 13: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-4" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 13: Test timeout computed to be: 1500 8: RETVAL: 0 8: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/donut-2.mha 8: 8: STDERR: 8: Not an error 10/571 Test #8: donut-2 ............................... Passed 0.06 sec test 15 Start 15: gauss-6 15: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-6" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 15: Test timeout computed to be: 1500 13: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 13: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 13: EXPECTED_ERRNO is 15: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 15: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 15: EXPECTED_ERRNO is 9: RETVAL: 0 9: STDOUT: Gabor: 0 1 -> (0.000000 -1.570796) -> (-0.000000 -0.000000 -1.000000) 9: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha 9: 9: STDERR: 9: Not an error 11/571 Test #9: gabor-01 .............................. Passed 0.05 sec test 17 Start 17: gauss-double-1 17: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 17: Test timeout computed to be: 1500 7: RETVAL: 0 7: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/donut-1.mha 7: Converting from ITK_UCHAR to ITK_UCHAR_VEC 7: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha 7: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/donut-1-prefix//Foreground.mha 7: save_ss_img: save_ss_list 7: Done. 7: Doing extraction 7: Keyholizing structure 0. 7: Write: DoseGridScaling = 0.000000 7: 7: STDERR: 7: Not an error 17: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 17: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 17: EXPECTED_ERRNO is 12/571 Test #7: donut-1 ............................... Passed 0.09 sec test 18 Start 18: gauss-double-2 18: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 18: Test timeout computed to be: 1500 18: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 18: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 18: EXPECTED_ERRNO is 13: RETVAL: 0 13: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha 13: 13: STDERR: 13: Not an error 13/571 Test #13: gauss-4 ............................... Passed 0.05 sec test 19 Start 19: gauss-ushort-1 19: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 19: Test timeout computed to be: 1500 19: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 19: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 19: EXPECTED_ERRNO is 15: RETVAL: 0 15: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-6.mha 15: 15: STDERR: 15: Not an error 14/571 Test #15: gauss-6 ............................... Passed 0.06 sec test 20 Start 20: gauss-ushort-2 20: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 20: Test timeout computed to be: 1500 17: RETVAL: 0 17: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha 17: 17: STDERR: 17: Not an error 15/571 Test #17: gauss-double-1 ........................ Passed 0.05 sec test 21 Start 21: lung-1 21: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/<>/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0" "-P" "/<>/cmake/RUN_CTEST.cmake" 21: Test timeout computed to be: 1500 20: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 20: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 20: EXPECTED_ERRNO is 21: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 21: PARMS is synth;--filenames-without-uids;--output;/<>/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0 21: EXPECTED_ERRNO is 18: RETVAL: 0 18: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha 18: 18: STDERR: 18: Not an error 16/571 Test #18: gauss-double-2 ........................ Passed 0.06 sec test 26 Start 26: ptv-1 26: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/<>/cmake/RUN_CTEST.cmake" 26: Test timeout computed to be: 1500 26: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 26: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5 26: EXPECTED_ERRNO is 19: RETVAL: 0 19: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha 19: 19: STDERR: 19: Not an error 17/571 Test #19: gauss-ushort-1 ........................ Passed 0.05 sec test 27 Start 27: ptv-2 27: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5" "-P" "/<>/cmake/RUN_CTEST.cmake" 27: Test timeout computed to be: 1500 27: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 27: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5 27: EXPECTED_ERRNO is 20: RETVAL: 0 20: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha 20: 20: STDERR: 20: Not an error 18/571 Test #20: gauss-ushort-2 ........................ Passed 0.06 sec test 29 Start 29: rect-2 29: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids" "-P" "/<>/cmake/RUN_CTEST.cmake" 29: Test timeout computed to be: 1500 29: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 29: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids 29: EXPECTED_ERRNO is 26: RETVAL: 0 26: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/ptv-1.mha 26: 26: STDERR: 26: Not an error 19/571 Test #26: ptv-1 ................................. Passed 0.05 sec test 30 Start 30: rect-2s 30: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2s" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-2s.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 30: Test timeout computed to be: 1500 30: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 30: PARMS is synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-2s.mha 30: EXPECTED_ERRNO is 27: RETVAL: 0 27: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/ptv-2.mha 27: 27: STDERR: 27: Not an error 20/571 Test #27: ptv-2 ................................. Passed 0.05 sec test 31 Start 31: rect-3 31: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-3" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids" "-P" "/<>/cmake/RUN_CTEST.cmake" 31: Test timeout computed to be: 1500 31: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 31: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids 31: EXPECTED_ERRNO is 30: RETVAL: 0 30: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-2s.mha 30: 30: STDERR: 30: Not an error 21/571 Test #30: rect-2s ............................... Passed 0.07 sec test 32 Start 32: rect-4 32: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-4" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 32: Test timeout computed to be: 1500 32: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 32: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 32: EXPECTED_ERRNO is 29: RETVAL: 0 29: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 29: Doing extraction 29: Keyholizing structure 0. 29: Write: DoseGridScaling = 0.000000 29: 29: STDERR: 29: Not an error 22/571 Test #29: rect-2 ................................ Passed 0.10 sec test 33 Start 33: rect-5 33: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-5" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1" "-P" "/<>/cmake/RUN_CTEST.cmake" 33: Test timeout computed to be: 1500 33: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 33: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1 33: EXPECTED_ERRNO is 32: RETVAL: 0 32: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-4.mha 32: 32: STDERR: 32: Not an error 23/571 Test #32: rect-4 ................................ Passed 0.05 sec test 39 Start 39: rect-10-roi-1 39: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60" "-P" "/<>/cmake/RUN_CTEST.cmake" 39: Test timeout computed to be: 1500 31: RETVAL: 0 31: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 31: Doing extraction 31: Keyholizing structure 0. 31: Write: DoseGridScaling = 0.000000 31: 31: STDERR: 31: Not an error 24/571 Test #31: rect-3 ................................ Passed 0.10 sec test 42 Start 42: rect-11-roi 42: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11-roi" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80" "-P" "/<>/cmake/RUN_CTEST.cmake" 42: Test timeout computed to be: 1500 39: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 39: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60 39: EXPECTED_ERRNO is 42: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 42: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80 42: EXPECTED_ERRNO is 33: RETVAL: 0 33: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-5.mha 33: 33: STDERR: 33: Not an error 25/571 Test #33: rect-5 ................................ Passed 0.06 sec test 43 Start 43: rect-12 43: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-12" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/<>/cmake/RUN_CTEST.cmake" 43: Test timeout computed to be: 1500 43: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 43: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 43: EXPECTED_ERRNO is 39: RETVAL: 0 39: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha 39: 39: STDERR: 39: Not an error 26/571 Test #39: rect-10-roi-1 ......................... Passed 0.05 sec test 44 Start 44: rect-13 44: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-13" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/<>/cmake/RUN_CTEST.cmake" 44: Test timeout computed to be: 1500 42: RETVAL: 0 42: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 42: 42: STDERR: 42: Not an error 27/571 Test #42: rect-11-roi ........................... Passed 0.05 sec test 45 Start 45: rect-14 45: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-14" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5" "-P" "/<>/cmake/RUN_CTEST.cmake" 45: Test timeout computed to be: 1500 44: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 44: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 44: EXPECTED_ERRNO is 45: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 45: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5 45: EXPECTED_ERRNO is 21: RETVAL: 0 21: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/lung-1.mha 21: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Body.mha 21: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Tumor.mha 21: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Lung.mha 21: Doing extraction 21: Keyholizing structure 0. 21: Keyholizing structure 1. 21: Keyholizing structure 2. 21: Write: DoseGridScaling = 0.000000 21: 21: STDERR: 21: Not an error 28/571 Test #21: lung-1 ................................ Passed 0.25 sec test 46 Start 46: rect-15 46: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-15" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/<>/cmake/RUN_CTEST.cmake" 46: Test timeout computed to be: 1500 43: RETVAL: 0 43: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-12.mha 43: 43: STDERR: 43: Not an error 29/571 Test #43: rect-12 ............................... Passed 0.06 sec test 47 Start 47: rect-16 47: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-16" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/<>/cmake/RUN_CTEST.cmake" 47: Test timeout computed to be: 1500 46: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 46: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 46: EXPECTED_ERRNO is 47: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 47: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 47: EXPECTED_ERRNO is 44: RETVAL: 0 44: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-13.mha 44: 44: STDERR: 45: RETVAL: 0 45: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-14.mha 45: 45: STDERR: 44: Not an error 45: Not an error 30/571 Test #45: rect-14 ............................... Passed 0.05 sec test 48 Start 48: rect-17 48: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-17" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/<>/cmake/RUN_CTEST.cmake" 48: Test timeout computed to be: 1500 31/571 Test #44: rect-13 ............................... Passed 0.06 sec test 56 Start 56: rectarr-03-a 56: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/<>/cmake/RUN_CTEST.cmake" 56: Test timeout computed to be: 1500 56: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 56: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 56: EXPECTED_ERRNO is 48: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 48: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5 48: EXPECTED_ERRNO is 47: RETVAL: 0 47: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-16.mha 47: 47: STDERR: 47: Not an error 46: RETVAL: 0 46: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-15.mha 46: 46: STDERR: 32/571 Test #47: rect-16 ............................... Passed 0.05 sec test 61 Start 61: sphere-1 61: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 61: Test timeout computed to be: 1500 46: Not an error 33/571 Test #46: rect-15 ............................... Passed 0.06 sec test 62 Start 62: sphere-2 62: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 62: Test timeout computed to be: 1500 61: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 61: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10 61: EXPECTED_ERRNO is 62: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 62: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50 62: EXPECTED_ERRNO is 56: RETVAL: 0 56: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha 56: 56: STDERR: 56: Not an error 34/571 Test #56: rectarr-03-a .......................... Passed 0.05 sec test 63 Start 63: sphere-3 63: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-3" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 63: Test timeout computed to be: 1500 48: RETVAL: 0 48: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 48: 48: STDERR: 48: Not an error 35/571 Test #48: rect-17 ............................... Passed 0.05 sec test 65 Start 65: sphere-5 65: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-5" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21" "-P" "/<>/cmake/RUN_CTEST.cmake" 65: Test timeout computed to be: 1500 63: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 63: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 63: EXPECTED_ERRNO is 65: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 65: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21 65: EXPECTED_ERRNO is 61: RETVAL: 0 61: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha 61: 61: STDERR: 61: Not an error 36/571 Test #61: sphere-1 .............................. Passed 0.05 sec test 71 Start 71: vf-zero 71: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 71: Test timeout computed to be: 1500 71: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 71: PARMS is synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38 71: EXPECTED_ERRNO is 62: RETVAL: 0 62: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 62: 62: STDERR: 62: Not an error 37/571 Test #62: sphere-2 .............................. Passed 0.06 sec test 72 Start 72: vf-trans-1 72: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 72: Test timeout computed to be: 1500 72: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 72: PARMS is synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38 72: EXPECTED_ERRNO is 65: RETVAL: 0 65: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha 65: 65: STDERR: 65: Not an error 38/571 Test #65: sphere-5 .............................. Passed 0.05 sec test 73 Start 73: vf-trans-2 73: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 73: Test timeout computed to be: 1500 63: RETVAL: 0 63: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/sphere-3.mha 63: 63: STDERR: 63: Not an error 39/571 Test #63: sphere-3 .............................. Passed 0.06 sec test 98 Start 98: drr-a 98: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/<>/obj-x86_64-linux-gnu/Testing/drr-a/out_;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 98: Test timeout computed to be: 1500 73: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 73: PARMS is synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38 73: EXPECTED_ERRNO is 98: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 98: PARMS is drr;-a;20;-O;/<>/obj-x86_64-linux-gnu/Testing/drr-a/out_;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 98: EXPECTED_ERRNO is 71: RETVAL: 0 71: STDOUT: Setting header 71: Origin = -243.4211 -243.4211 -243.4211 71: Size = 38 38 38 71: Spacing = 13.1579 13.1579 13.1579 71: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 71: Header was set 71: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha 71: 71: STDERR: 71: Not an error 40/571 Test #71: vf-zero ............................... Passed 0.05 sec test 186 Start 186: plm-convert-dicom-a 186: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix" "-P" "/<>/cmake/RUN_CTEST.cmake" 186: Test timeout computed to be: 1500 186: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 186: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix 186: EXPECTED_ERRNO is 72: RETVAL: 0 72: STDOUT: Setting header 72: Origin = -243.4211 -243.4211 -243.4211 72: Size = 38 38 38 72: Spacing = 13.1579 13.1579 13.1579 72: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 72: Header was set 72: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 72: 72: STDERR: 72: Not an error 41/571 Test #72: vf-trans-1 ............................ Passed 0.06 sec test 281 Start 281: plm-reg-itk-translation 281: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 281: Test timeout computed to be: 1500 281: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 281: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt 281: EXPECTED_ERRNO is 73: RETVAL: 0 73: STDOUT: Setting header 73: Origin = -243.4211 -243.4211 -243.4211 73: Size = 38 38 38 73: Spacing = 13.1579 13.1579 13.1579 73: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 73: Header was set 73: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 73: 73: STDERR: 73: Not an error 42/571 Test #73: vf-trans-2 ............................ Passed 0.05 sec test 313 Start 313: plm-bsp-mse-h 313: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 313: Test timeout computed to be: 1500 313: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 313: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt 313: EXPECTED_ERRNO is 186: RETVAL: 0 186: STDOUT: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10026.1659396364.300824RTSTRUCT 186: Found DCM_ReferencedFrameOfReferenceSequence! 186: Found DCM_RTReferencedStudySequence! 186: Trying to load rt structure set. 186: Adding structure (1), Foreground 186: Structure 1 has color 255\0\0 186: Setting PIH from rasterization heuristicsPIH is: 186: Origin = -55.2632 -55.2632 -46.0526 186: Size = 512 512 7 186: Spacing = 0.2159 0.2159 13.1579 186: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 186: Rt_study_warp: Convert ss_img to cxt. 186: Rt_study_warp: Apply dicom_dir. 186: Rt_study_warp: Set geometry from PIH. 186: Rt_study_warp: Set rasterization geometry. 186: rast_dim = 512 512 7 186: rast_offset = -55.2632 -55.2632 -46.0526 186: rast_spacing = 0.215872 0.215872 13.1579 186: Rt_study_warp: warp and save ss. 186: Warp_and_save_ss: seg->rasterize 186: Rasterizing... 186: Converting... 186: Finished rasterization. 186: Warp_and_save_ss: save_ss_img 186: save_ss_img: save_ss_image 186: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha 186: save_ss_img: save_ss_list 186: Done. 186: save_ss_img: save_prefix 186: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix/Foreground.mha 186: save_ss_img: save_cxt 186: Finished! 186: 186: STDERR: 186: Not an error 43/571 Test #186: plm-convert-dicom-a ................... Passed 0.10 sec test 336 Start 336: plm-bsp-mi-c-2 336: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 336: Test timeout computed to be: 1500 336: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 336: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt 336: EXPECTED_ERRNO is 281: RETVAL: 0 281: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 281: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 281: Launching registration worker thread 281: Inside registration worker thread 281: Doing registration stage 281: [1] xf_in->m_type = 0, xf_out->m_type = 0 281: Fixed image for this stage: 281: Dim = 19 19 19 281: Origin = -24.3421 -24.3421 -24.3421 281: Spacing = 2.63158 2.63158 2.63158 281: Direction Cosines = 281: 1 0 0 281: 0 1 0 281: 0 0 1 281: Moving image for this stage: 281: Dim = 19 19 19 281: Origin = -24.3421 -24.3421 -24.3421 281: Spacing = 2.63158 2.63158 2.63158 281: Direction Cosines = 281: 1 0 0 281: 0 1 0 281: 0 0 1 281: Initial Parameters = [0, 0, 0] 281: Starting ITK registration 281: StartEvent: [0, 0, 0] 281: MSE [ 0, 0,10.00] 18756.235 [0, 0, 0] * 281: MSE [ 1, 1, 5.00] 1.116 [9.999997615028184, -0.004883617032987324, -0.004883617032988729] -18755.12 * 281: MSE [ 2, 2, 2.50] 5544.602 [5.318441699151415, 1.2366948554202783, 1.236694855420464] 5543.49 281: MSE [ 3, 3, 2.50] 1453.699 [7.6106519400857895, 0.5310844064629847, 0.5310844064630645] -4090.90 281: MSE [ 4, 4, 1.25] 4.252 [9.9614605854425, -0.07045474975048627, -0.07045474975050126] -1449.45 281: EndEvent: [9.9614605854425, -0.07045474975048627, -0.07045474975050126] 281: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. 281: ITK registration complete 281: [2] xf_out->m_type = 1, xf_in->m_type = 0 281: ** Registration worker thread finished. 281: Writing transformation ... 281: Warping... 281: plm_warp_itk: xform_to_itk_vf 281: plm_warp_itk: convert_to_itk 281: plm_warp_itk: warping... 281: Saving image... 281: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha 281: Saving vf... 281: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha 281: Load: 0.050267 281: Run: 0.0148721 281: Save: 0.00452709 281: Total: 0.0696661 281: Finished! 281: 281: STDERR: 281: Not an error 44/571 Test #281: plm-reg-itk-translation ............... Passed 0.13 sec test 439 Start 439: plm-reg-compose 439: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-compose" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/Testing/Data/plm-reg-compose.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 439: Test timeout computed to be: 1500 439: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 439: PARMS is /<>/Testing/Data/plm-reg-compose.txt 439: EXPECTED_ERRNO is 313: RETVAL: 0 313: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 313: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 313: Launching registration worker thread 313: Inside registration worker thread 313: Doing registration stage 313: [1] xf_in->m_type = 0, xf_out->m_type = 0 313: RESAMPLE 1 1: (2 2 2), (2 2 2) 313: RESAMPLE 1 1: (2 2 2), (2 2 2) 313: volume_calc_grad complete. 313: bspline_xform_initialize 313: rdims = (2,2,2) 313: vox_per_rgn = (11,11,11) 313: cdims = (5 5 5) 313: Algorithm flavor = h 313: Threading = 0 313: >> Checking JH allocation 313: BSPLINE PARMS 313: max_its = 5 313: max_feval = 5 313: BSPLINE XFORM HEADER 313: vox_per_rgn = 11 11 11 313: roi_offset = 0 0 0 313: roi_dim = 19 19 19 313: img_dc = 1 0 0 0 1 0 0 0 1 313: BST METRICS 313: MET 110100 MSE 1.000000 313: Setting nmax, mmax = 375 21 313: >>> START 313: This problem is unconstrained. 313: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.001 s ] 313: CMIN 0.00 CAVG 0.00 CMAX 0.00 313: LSD 0.00 313: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.001 s ] 313: CMIN -0.07 CAVG 0.01 CMAX 0.68 313: LSD 1.00 313: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.001 s ] 313: CMIN -0.35 CAVG 0.05 CMAX 3.40 313: LSD 5.00 313: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.001 s ] 313: CMIN -1.48 CAVG 0.20 CMAX 14.26 313: LSD 21.00 313: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.013 s ] 313: CMIN -1.74 CAVG 0.44 CMAX 32.50 313: LSD 27.95 313: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.001 s ] 313: CMIN -1.73 CAVG 0.34 CMAX 23.99 313: LSD 13.11 313: [2] xf_out->m_type = 9, xf_in->m_type = 0 313: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 313: bspline_xform_initialize 313: rdims = (2,2,2) 313: vox_per_rgn = (22,22,22) 313: cdims = (5 5 5) 313: ** Registration worker thread finished. 313: Writing transformation ... 313: Warping... 313: Running: plm_warp_native 313: Converting input image... 313: Converting xform... 313: bspline_xform_initialize 313: rdims = (2,2,2) 313: vox_per_rgn = (22,22,22) 313: cdims = (5 5 5) 313: Creating output vf... 313: Creating output volume... 313: Running native warper... 313: bspline_warp complete. 313: Back convert to original type... 313: > Convert vf to itk 313: > Conversion complete. 313: plm_warp_native is complete. 313: Saving image... 313: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha 313: Saving vf... 313: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-vf.mha 313: Load: 0.0417731 313: Run: 0.0311069 313: Save: 0.04071 313: Total: 0.11359 313: Finished! 313: 313: STDERR: 313: Not an error 45/571 Test #313: plm-bsp-mse-h ......................... Passed 0.21 sec test 526 Start 526: plm-xf-convert-d 526: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/<>/Testing/Data/plm-xf-convert.txt;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline" "-P" "/<>/cmake/RUN_CTEST.cmake" 526: Test timeout computed to be: 1500 526: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 526: PARMS is xf-convert;--input;/<>/Testing/Data/plm-xf-convert.txt;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline 526: EXPECTED_ERRNO is 526: RETVAL: 0 526: STDOUT: bspline_xform_initialize 526: rdims = (2,2,2) 526: vox_per_rgn = (11,11,11) 526: cdims = (5 5 5) 526: about to xform_convert 526: did xform_convert 526: 526: STDERR: 526: Not an error 46/571 Test #526: plm-xf-convert-d ...................... Passed 0.13 sec test 4 Start 4: cyl-2 4: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/<>/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 4: Test timeout computed to be: 1500 4: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 4: PARMS is mask;--input;/<>/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd 4: EXPECTED_ERRNO is 98: RETVAL: 0 98: STDOUT: Rendering DRR 0 98: I/O time: 0.000174 sec 98: Rendering DRR 1 98: I/O time: 0.000176 sec 98: Rendering DRR 2 98: I/O time: 0.000135 sec 98: Rendering DRR 3 98: I/O time: 0.000166 sec 98: Rendering DRR 4 98: I/O time: 0.000175 sec 98: Rendering DRR 5 98: I/O time: 0.000179 sec 98: Rendering DRR 6 98: I/O time: 0.000145 sec 98: Rendering DRR 7 98: I/O time: 0.000204 sec 98: Rendering DRR 8 98: I/O time: 0.000160 sec 98: Rendering DRR 9 98: I/O time: 0.000149 sec 98: Rendering DRR 10 98: I/O time: 0.000162 sec 98: Rendering DRR 11 98: I/O time: 0.000151 sec 98: Rendering DRR 12 98: I/O time: 0.000169 sec 98: Rendering DRR 13 98: I/O time: 0.000140 sec 98: Rendering DRR 14 98: I/O time: 0.000148 sec 98: Rendering DRR 15 98: I/O time: 0.000139 sec 98: Rendering DRR 16 98: I/O time: 0.000147 sec 98: Rendering DRR 17 98: I/O time: 0.000188 sec 98: Rendering DRR 18 98: I/O time: 0.000169 sec 98: Rendering DRR 19 98: I/O time: 0.000150 sec 98: Total time: 0.423935 secs 98: 98: STDERR: 98: Not an error 47/571 Test #98: drr-a ................................. Passed 0.50 sec test 6 Start 6: cyl-3 6: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-3" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/<>/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 6: Test timeout computed to be: 1500 4: RETVAL: 0 4: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd 4: Finished! 4: 4: STDERR: 4: Not an error 48/571 Test #4: cyl-2 ................................. Passed 0.13 sec test 22 Start 22: lung-2 22: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/<>/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5" "-P" "/<>/cmake/RUN_CTEST.cmake" 22: Test timeout computed to be: 1500 6: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 6: PARMS is mask;--input;/<>/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/<>/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/<>/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 6: EXPECTED_ERRNO is 22: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 22: PARMS is synth;--filenames-without-uids;--output;/<>/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5 22: EXPECTED_ERRNO is 6: RETVAL: 0 6: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 6: Finished! 6: 6: STDERR: 439: RETVAL: 0 439: STDOUT: Loading fixed image [0]: gauss-2.mha 439: Loading moving image [0]: gauss-5.mha 439: Launching registration worker thread 439: Inside registration worker thread 439: Doing registration stage 439: [1] xf_in->m_type = 0, xf_out->m_type = 0 439: RESAMPLE 1 1: (2 2 2), (2 2 2) 439: RESAMPLE 1 1: (2 2 2), (2 2 2) 439: volume_calc_grad complete. 439: bspline_xform_initialize 439: rdims = (2,2,2) 439: vox_per_rgn = (11,11,11) 439: cdims = (5 5 5) 439: Algorithm flavor = g 439: Threading = 0 439: >> Checking JH allocation 439: BSPLINE PARMS 439: max_its = 10 439: max_feval = 10 439: BSPLINE XFORM HEADER 439: vox_per_rgn = 11 11 11 439: roi_offset = 0 0 0 439: roi_dim = 19 19 19 439: img_dc = 1 0 0 0 1 0 0 0 1 439: BST METRICS 439: MET 110100 MSE 1.000000 439: Setting nmax, mmax = 375 21 439: >>> START 439: This problem is unconstrained. 439: [ 0, 0] MSE 13049.518 NV 6859 GM -1702.194 GN 529 [ 0.043 s ] 439: CMIN 0.00 CAVG 0.00 CMAX 0.00 439: LSD 0.00 439: [ 0, 1] MSE 12469.547 NV 6859 GM -1637.952 GN 509 [ 0.024 s ] 439: CMIN -0.05 CAVG 0.01 CMAX 0.74 439: LSD 1.00 439: [ 0, 2] MSE 10357.764 NV 6859 GM -1646.825 GN 515 [ 0.036 s ] 439: CMIN -0.26 CAVG 0.04 CMAX 3.71 439: LSD 5.00 439: [ 0, 3] MSE 1944.747 NV 6295 GM -809.887 GN 247 [ 0.024 s ] 439: CMIN -1.11 CAVG 0.18 CMAX 15.56 439: LSD 21.00 439: [ 1, 4] MSE 891.268 NV 5678 GM 504.524 GN 187 [ 0.032 s ] 439: CMIN -1.50 CAVG 0.35 CMAX 29.17 439: LSD 19.59 439: [ 2, 5] MSE 117.931 NV 5939 GM -11.010 GN 12.8 [ 0.048 s ] 439: CMIN -1.27 CAVG 0.29 CMAX 23.54 439: LSD 8.47 439: [ 3, 6] MSE 110.217 NV 5931 GM -24.361 GN 9.26 [ 0.024 s ] 439: CMIN -1.44 CAVG 0.29 CMAX 23.60 439: LSD 0.55 439: [ 4, 7] MSE 101.235 NV 5928 GM -14.715 GN 10.7 [ 0.022 s ] 439: CMIN -1.88 CAVG 0.29 CMAX 23.41 439: LSD 1.34 439: [ 5, 8] MSE 89.096 NV 5930 GM -23.801 GN 14.1 [ 0.014 s ] 439: CMIN -2.79 CAVG 0.31 CMAX 22.44 439: LSD 2.74 439: [ 6, 9] MSE 76.413 NV 5947 GM 60.289 GN 16.9 [ 0.020 s ] 439: CMIN -4.30 CAVG 0.34 CMAX 20.28 439: LSD 5.25 439: [ 7, 10] MSE 68.670 NV 5976 GM -50.552 GN 14.5 [ 0.032 s ] 439: CMIN -6.00 CAVG 0.36 CMAX 17.22 439: LSD 5.96 439: [2] xf_out->m_type = 9, xf_in->m_type = 0 439: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 439: bspline_xform_initialize 439: rdims = (2,2,2) 439: vox_per_rgn = (22,22,22) 439: cdims = (5 5 5) 439: ** Registration worker thread finished. 439: Writing transformation ... 439: Warping... 439: Running: plm_warp_native 439: Converting input image... 439: Converting xform... 439: bspline_xform_initialize 439: rdims = (2,2,2) 439: vox_per_rgn = (22,22,22) 439: cdims = (5 5 5) 439: Creating output vf... 439: Creating output volume... 439: Running native warper... 439: bspline_warp complete. 439: Back convert to original type... 439: > Convert vf to itk 439: > Conversion complete. 439: plm_warp_native is complete. 439: Saving image... 439: Trying to write image to plm-reg-compose-img.mha 439: Saving vf... 439: Trying to write image to plm-reg-compose-vf.mha 439: Load: 0.0210311 439: Run: 0.337549 439: Save: 0.023289 439: Total: 0.381869 439: Finished! 439: 439: STDERR: 6: Not an error 439: Not an error 49/571 Test #439: plm-reg-compose ....................... Passed 0.49 sec test 36 Start 36: rect-8 36: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-8" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 36: Test timeout computed to be: 1500 50/571 Test #6: cyl-3 ................................. Passed 0.15 sec test 37 Start 37: rect-9 37: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-9" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 37: Test timeout computed to be: 1500 36: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 36: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50 36: EXPECTED_ERRNO is 37: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 37: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 37: EXPECTED_ERRNO is 36: RETVAL: 0 36: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-8.mha 36: 36: STDERR: 36: Not an error 51/571 Test #36: rect-8 ................................ Passed 0.05 sec test 51 Start 51: rectarr-01-a 51: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/<>/cmake/RUN_CTEST.cmake" 51: Test timeout computed to be: 1500 51: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 51: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 51: EXPECTED_ERRNO is 37: RETVAL: 0 37: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-9.mha 37: 37: STDERR: 37: Not an error 52/571 Test #37: rect-9 ................................ Passed 0.08 sec test 57 Start 57: rectarr-03 57: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5" "-P" "/<>/cmake/RUN_CTEST.cmake" 57: Test timeout computed to be: 1500 57: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 57: PARMS is synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5 57: EXPECTED_ERRNO is 51: RETVAL: 0 51: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha 51: 51: STDERR: 51: Not an error 53/571 Test #51: rectarr-01-a .......................... Passed 0.09 sec test 58 Start 58: rectarr-04 58: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-04" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5" "-P" "/<>/cmake/RUN_CTEST.cmake" 58: Test timeout computed to be: 1500 336: RETVAL: 0 336: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 336: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha 336: Launching registration worker thread 336: Inside registration worker thread 336: Doing registration stage 336: [1] xf_in->m_type = 0, xf_out->m_type = 0 336: RESAMPLE 1 1: (1 1 1), (1 1 1) 336: RESAMPLE 1 1: (1 1 1), (1 1 1) 336: volume_calc_grad complete. 336: bspline_xform_initialize 336: rdims = (3,3,3) 336: vox_per_rgn = (15,15,15) 336: cdims = (6 6 6) 336: Algorithm flavor = c 336: Threading = 0 336: >> Checking JH allocation 336: >> Performing JH allocation 336: BSPLINE PARMS 336: max_its = 10 336: max_feval = 10 336: BSPLINE XFORM HEADER 336: vox_per_rgn = 15 15 15 336: roi_offset = 0 0 0 336: roi_dim = 38 38 38 336: img_dc = 1 0 0 0 1 0 0 0 1 336: BST METRICS 336: MET 110100 MI 1.000000 336: >> Performing JH initialization 336: Using alpha_0 (1.000000) 336: [ 0, 0] MI -0.3659457 NV 54872 GM -0.007 GN 0.00788 [ 0.037 s ] 336: CMIN 0.01 CAVG 0.01 CMAX 0.01 336: [ 0, 1] MI -0.3699214 NV 54872 GM -0.056 GN 0.00867 [ 0.070 s ] 336: CMIN -0.21 CAVG 0.01 CMAX 0.30 336: GR 0.50 NEW_A 1.00 ACCEPT? 1 336: [ 1, 2] MI -0.3777946 NV 54872 GM -0.049 GN 0.00903 [ 0.067 s ] 336: CMIN -0.23 CAVG 0.02 CMAX 0.69 336: GR 0.91 NEW_A 3.00 ACCEPT? 1 336: [ 2, 3] MI -0.4137608 NV 54753 GM -0.063 GN 0.017 [ 0.057 s ] 336: CMIN -0.35 CAVG 0.05 CMAX 2.09 336: GR 3.98 NEW_A 9.00 ACCEPT? 1 336: [ 3, 4] MI -0.5521525 NV 53587 GM -0.081 GN 0.017 [ 0.038 s ] 336: CMIN -0.97 CAVG 0.10 CMAX 7.08 336: GR 8.16 NEW_A 27.00 ACCEPT? 1 336: [ 4, 5] MI -1.2166027 NV 49761 GM -0.031 GN 0.0276 [ 0.058 s ] 336: CMIN -2.22 CAVG 0.30 CMAX 20.76 336: GR 38.97 NEW_A 81.00 ACCEPT? 1 336: [ 5, 6] MI -0.4035923 NV 36457 GM -0.029 GN 0.0114 [ 0.041 s ] 336: CMIN -26.58 CAVG 0.44 CMAX 33.14 336: GR -29.50 NEW_A 40.50 ACCEPT? 0 336: [ 5, 7] MI -0.7946788 NV 43303 GM -0.068 GN 0.0215 [ 0.031 s ] 336: CMIN -14.21 CAVG 0.37 CMAX 26.12 336: GR -15.31 NEW_A 20.25 ACCEPT? 0 336: [ 5, 8] MI -1.1523657 NV 46825 GM -0.160 GN 0.031 [ 0.030 s ] 336: CMIN -8.02 CAVG 0.33 CMAX 23.44 336: GR -2.33 NEW_A 10.12 ACCEPT? 0 336: [ 5, 9] MI -1.3108922 NV 48385 GM -0.176 GN 0.0266 [ 0.032 s ] 336: CMIN -4.93 CAVG 0.31 CMAX 22.10 336: GR 3.42 NEW_A 30.38 ACCEPT? 1 336: [ 6, 10] MI -0.7927921 NV 46839 GM 0.149 GN 0.0234 [ 0.032 s ] 336: CMIN -2.23 CAVG 0.62 CMAX 17.80 336: GR -19.50 NEW_A 15.19 ACCEPT? 0 336: [2] xf_out->m_type = 9, xf_in->m_type = 0 336: ** Registration worker thread finished. 336: Writing transformation ... 336: Warping... 336: Running: plm_warp_native 336: Converting input image... 336: Converting xform... 336: bspline_xform_initialize 336: rdims = (3,3,3) 336: vox_per_rgn = (15,15,15) 336: cdims = (6 6 6) 336: Creating output vf... 336: Creating output volume... 336: Running native warper... 336: bspline_warp complete. 336: Back convert to original type... 336: > Convert vf to itk 336: > Conversion complete. 336: plm_warp_native is complete. 336: Saving image... 336: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha 336: Saving vf... 336: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha 336: Load: 0.0447841 336: Run: 0.530311 336: Save: 0.027153 336: Total: 0.602248 336: Finished! 336: 336: STDERR: 336: Not an error 54/571 Test #336: plm-bsp-mi-c-2 ........................ Passed 0.69 sec test 66 Start 66: sphere-6 66: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-6" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 66: Test timeout computed to be: 1500 58: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 58: PARMS is synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5 58: EXPECTED_ERRNO is 66: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 66: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 66: EXPECTED_ERRNO is 57: RETVAL: 0 57: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-03.mha 57: 57: STDERR: 57: Not an error 55/571 Test #57: rectarr-03 ............................ Passed 0.09 sec test 67 Start 67: sphere-7 67: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-7" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 67: Test timeout computed to be: 1500 67: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 67: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 67: EXPECTED_ERRNO is 22: RETVAL: 0 22: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/lung-2.mha 22: Doing extraction 22: Keyholizing structure 0. 22: Keyholizing structure 1. 22: Keyholizing structure 2. 22: Write: DoseGridScaling = 0.000000 22: 22: STDERR: 22: Not an error 56/571 Test #22: lung-2 ................................ Passed 0.33 sec test 74 Start 74: vf-radial-1 74: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 74: Test timeout computed to be: 1500 66: RETVAL: 0 66: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/sphere-6.mha 66: 66: STDERR: 66: Not an error 57/571 Test #66: sphere-6 .............................. Passed 0.05 sec test 90 Start 90: plm-diff-a 90: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 90: Test timeout computed to be: 1500 74: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 74: PARMS is synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38 74: EXPECTED_ERRNO is 90: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 90: PARMS is diff;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha 90: EXPECTED_ERRNO is 58: RETVAL: 0 58: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-04.mha 58: 58: STDERR: 58: Not an error 58/571 Test #58: rectarr-04 ............................ Passed 0.07 sec test 93 Start 93: plm-diff-b 93: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 93: Test timeout computed to be: 1500 67: RETVAL: 0 67: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/sphere-7.mha 67: 67: STDERR: 67: Not an error 59/571 Test #67: sphere-7 .............................. Passed 0.06 sec test 101 Start 101: drr-b 101: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/<>/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 101: Test timeout computed to be: 1500 93: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 93: PARMS is diff;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 93: EXPECTED_ERRNO is 101: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 101: PARMS is drr;-a;20;-O;/<>/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 101: EXPECTED_ERRNO is 74: RETVAL: 0 74: STDOUT: Setting header 74: Origin = -243.4211 -243.4211 -243.4211 74: Size = 38 38 38 74: Spacing = 13.1579 13.1579 13.1579 74: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 74: Header was set 74: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha 74: 74: STDERR: 74: Not an error 60/571 Test #74: vf-radial-1 ........................... Passed 0.05 sec test 104 Start 104: drr-c 104: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/<>/obj-x86_64-linux-gnu/Testing/drr-c/out_;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 104: Test timeout computed to be: 1500 104: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 104: PARMS is drr;-a;20;-O;/<>/obj-x86_64-linux-gnu/Testing/drr-c/out_;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha 104: EXPECTED_ERRNO is 90: RETVAL: 0 90: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha 90: 90: STDERR: 90: Not an error 61/571 Test #90: plm-diff-a ............................ Passed 0.08 sec test 107 Start 107: fdk-cpu-a 107: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/<>/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 107: Test timeout computed to be: 1500 107: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 107: PARMS is fdk;-I;/<>/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha 107: EXPECTED_ERRNO is 93: RETVAL: 0 93: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 93: 93: STDERR: 93: Not an error 62/571 Test #93: plm-diff-b ............................ Passed 0.08 sec test 110 Start 110: fdk-cpu-d 110: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/<>/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 110: Test timeout computed to be: 1500 110: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 110: PARMS is fdk;-I;/<>/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha 110: EXPECTED_ERRNO is 101: RETVAL: 0 101: STDOUT: Rendering DRR 0 101: I/O time: 0.000221 sec 101: Rendering DRR 1 101: I/O time: 0.000149 sec 101: Rendering DRR 2 101: I/O time: 0.000153 sec 101: Rendering DRR 3 101: I/O time: 0.000241 sec 101: Rendering DRR 4 101: I/O time: 0.000180 sec 101: Rendering DRR 5 101: I/O time: 0.000156 sec 101: Rendering DRR 6 101: I/O time: 0.000151 sec 101: Rendering DRR 7 101: I/O time: 0.000129 sec 101: Rendering DRR 8 101: I/O time: 0.000132 sec 101: Rendering DRR 9 101: I/O time: 0.000160 sec 101: Rendering DRR 10 101: I/O time: 0.000161 sec 101: Rendering DRR 11 101: I/O time: 0.000221 sec 101: Rendering DRR 12 101: I/O time: 0.000182 sec 101: Rendering DRR 13 101: I/O time: 0.000128 sec 101: Rendering DRR 14 101: I/O time: 0.000164 sec 101: Rendering DRR 15 101: I/O time: 0.000141 sec 101: Rendering DRR 16 101: I/O time: 0.000144 sec 101: Rendering DRR 17 101: I/O time: 0.000144 sec 101: Rendering DRR 18 101: I/O time: 0.000135 sec 101: Rendering DRR 19 101: I/O time: 0.000329 sec 101: Total time: 0.598169 secs 101: 101: STDERR: 101: Not an error 63/571 Test #101: drr-b ................................. Passed 0.71 sec test 113 Start 113: landmark-warp-a 113: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 113: Test timeout computed to be: 1500 104: RETVAL: 0 104: STDOUT: Rendering DRR 0 104: I/O time: 0.000227 sec 104: Rendering DRR 1 104: I/O time: 0.000166 sec 104: Rendering DRR 2 104: I/O time: 0.000149 sec 104: Rendering DRR 3 104: I/O time: 0.000148 sec 104: Rendering DRR 4 104: I/O time: 0.000158 sec 104: Rendering DRR 5 104: I/O time: 0.000168 sec 104: Rendering DRR 6 104: I/O time: 0.000148 sec 104: Rendering DRR 7 104: I/O time: 0.000153 sec 104: Rendering DRR 8 104: I/O time: 0.000180 sec 104: Rendering DRR 9 104: I/O time: 0.000177 sec 104: Rendering DRR 10 104: I/O time: 0.000164 sec 104: Rendering DRR 11 104: I/O time: 0.000210 sec 104: Rendering DRR 12 104: I/O time: 0.000249 sec 104: Rendering DRR 13 104: I/O time: 0.000139 sec 104: Rendering DRR 14 104: I/O time: 0.000154 sec 104: Rendering DRR 15 104: I/O time: 0.000126 sec 104: Rendering DRR 16 104: I/O time: 0.000132 sec 104: Rendering DRR 17 104: I/O time: 0.000127 sec 104: Rendering DRR 18 104: I/O time: 0.000151 sec 104: Rendering DRR 19 104: I/O time: 0.000180 sec 104: Total time: 0.607787 secs 104: 104: STDERR: 104: Not an error 64/571 Test #104: drr-c ................................. Passed 0.69 sec test 118 Start 118: landmark-warp-b 118: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;wendland;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0" "-P" "/<>/cmake/RUN_CTEST.cmake" 118: Test timeout computed to be: 1500 113: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 113: PARMS is lm-warp;-a;tps;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha 113: EXPECTED_ERRNO is 118: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 118: PARMS is lm-warp;-a;wendland;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0 118: EXPECTED_ERRNO is 113: RETVAL: 0 113: STDOUT: Hello world 113: Gonna convert pointsets 113: Pointset: 113: rect-2-0 -26.271700 -52.162899 46.052799 113: rect-2-1 65.870201 -52.543598 46.053001 113: rect-2-2 65.870201 52.543900 46.053001 113: rect-2-3 -25.510201 53.686199 46.053001 113: rect-2-4 -25.891001 -52.162899 -46.052502 113: rect-2-5 66.631699 -53.305099 -46.053001 113: rect-2-6 65.870201 53.305401 -46.053001 113: rect-2-7 -25.129499 53.686199 -46.053001 113: Conversion complete. 113: -26.2717 -52.1629 46.0528 113: 65.8702 -52.5436 46.053 113: 65.8702 52.5439 46.053 113: -25.5102 53.6862 46.053 113: -25.891 -52.1629 -46.0525 113: 66.6317 -53.3051 -46.053 113: 65.8702 53.3054 -46.053 113: -25.1295 53.6862 -46.053 113: Setting landmarks to TPS 113: Computing matrix 113: Setting xform 113: Converting to VF 113: Warping... 113: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha 113: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha 113: 113: STDERR: 113: Not an error 65/571 Test #113: landmark-warp-a ....................... Passed 0.17 sec test 123 Start 123: landmark-warp-c 123: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;gauss;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0" "-P" "/<>/cmake/RUN_CTEST.cmake" 123: Test timeout computed to be: 1500 118: RETVAL: 0 118: STDOUT: 180.000000 118: 180.000000 118: 180.000000 118: 180.000000 118: 180.000000 118: 180.000000 118: 180.000000 118: 180.000000 118: coeff 0 -18.4133 0.0962 0.0000 118: coeff 1 -7.5271 -0.0286 0.0000 118: coeff 2 -6.1678 1.3625 -0.0000 118: coeff 3 -20.1368 -0.9723 0.0000 118: coeff 4 -19.7774 -0.2570 -0.0000 118: coeff 5 -7.3050 1.5884 0.0000 118: coeff 6 -7.4759 -0.3261 -0.0000 118: coeff 7 -20.6523 -0.1769 -0.0000 118: Creating output vf 118: Rendering vector field 118: Wendland RBF, updating the vector field 118: Converting volume to float 118: Creating output vol 118: Warping image 118: Direction cosines: vin = 1.000000 0.000000 0.000000 ... 118: vf = 1.000000 0.000000 0.000000 ... 118: spac: vin = 13.157895 13.157895 13.157895 ... 118: vf = 13.157895 13.157895 13.157895 ... 118: proj: vin = 0.076000 -0.000000 0.000000 ... 118: vf = 0.076000 -0.000000 0.000000 ... 118: step: vin = 13.157895 0.000000 0.000000 ... 118: vf = 13.157895 0.000000 0.000000 ... 118: Freeing coeff 118: Done with rbf_wendland_warp 118: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha 118: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha 118: 118: STDERR: 118: Not an error 66/571 Test #118: landmark-warp-b ....................... Passed 0.17 sec test 129 Start 129: plm-add-a 129: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 129: Test timeout computed to be: 1500 123: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 123: PARMS is lm-warp;-a;gauss;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0 123: EXPECTED_ERRNO is 129: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 129: PARMS is add;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 129: EXPECTED_ERRNO is 123: RETVAL: 0 123: STDOUT: 74.000000 123: 74.000000 123: 74.000000 123: 74.000000 123: 74.000000 123: 74.000000 123: 74.000000 123: 74.000000 123: coeff 0 -14.4830 0.0226 -0.0000 123: coeff 1 -6.4591 0.0989 0.0000 123: coeff 2 -5.6641 0.8767 0.0000 123: coeff 3 -15.5832 -0.6135 0.0000 123: coeff 4 -15.3769 -0.1107 0.0000 123: coeff 5 -6.4169 1.0717 -0.0000 123: coeff 6 -6.5309 -0.1220 0.0000 123: coeff 7 -16.0092 -0.1893 -0.0000 123: Creating output vf 123: Rendering vector field 123: Gauss RBF, updating the vector field 123: Converting volume to float 123: Creating output vol 123: Warping image 123: Direction cosines: vin = 1.000000 0.000000 0.000000 ... 123: vf = 1.000000 0.000000 0.000000 ... 123: spac: vin = 13.157895 13.157895 13.157895 ... 123: vf = 13.157895 13.157895 13.157895 ... 123: proj: vin = 0.076000 -0.000000 0.000000 ... 123: vf = 0.076000 -0.000000 0.000000 ... 123: step: vin = 13.157895 0.000000 0.000000 ... 123: vf = 13.157895 0.000000 0.000000 ... 123: Freeing coeff 123: Done with rbf_gauss_warp 123: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha 123: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha 123: 123: STDERR: 123: Not an error 67/571 Test #123: landmark-warp-c ....................... Passed 0.16 sec test 132 Start 132: plm-add-b 132: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 132: Test timeout computed to be: 1500 129: RETVAL: 0 129: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd 129: 129: STDERR: 129: Not an error 68/571 Test #129: plm-add-a ............................. Passed 0.16 sec test 135 Start 135: plm-add-vf-a 135: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 135: Test timeout computed to be: 1500 132: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 132: PARMS is average;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 132: EXPECTED_ERRNO is 135: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 135: PARMS is add;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 135: EXPECTED_ERRNO is 107: RETVAL: 0 107: STDOUT: Reconstructing... 107: Processing image 0 107: Processing image 1 107: Processing image 2 107: Processing image 3 107: Processing image 4 107: Processing image 5 107: Processing image 6 107: Processing image 7 107: Processing image 8 107: Processing image 9 107: Processing image 10 107: Processing image 11 107: Processing image 12 107: Processing image 13 107: Processing image 14 107: Processing image 15 107: Processing image 16 107: Processing image 17 107: Processing image 18 107: Processing image 19 107: I/O time (total) = 0.00140047 107: I/O time (per image) = 7.00235e-05 107: Filter time = 0 107: Filter time (per image) = 0 107: Backprojection time = 0.891354 107: Backprojection time (per image) = 0.0445677 107: Writing output volume(s)... 107: done. 107: 107: 107: STDERR: 107: Not an error 69/571 Test #107: fdk-cpu-a ............................. Passed 1.01 sec test 138 Start 138: plm-add-vf-b 138: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 138: Test timeout computed to be: 1500 138: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 138: PARMS is average;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 138: EXPECTED_ERRNO is 132: RETVAL: 0 132: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd 132: 132: STDERR: 132: Not an error 70/571 Test #132: plm-add-b ............................. Passed 0.08 sec test 141 Start 141: plm-adjust-a 141: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100" "-P" "/<>/cmake/RUN_CTEST.cmake" 141: Test timeout computed to be: 1500 141: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 141: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100 141: EXPECTED_ERRNO is 135: RETVAL: 0 135: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd 135: 135: STDERR: 135: Not an error 71/571 Test #135: plm-add-vf-a .......................... Passed 0.08 sec test 144 Start 144: plm-adjust-b 144: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1" "-P" "/<>/cmake/RUN_CTEST.cmake" 144: Test timeout computed to be: 1500 138: RETVAL: 0 138: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd 138: 138: STDERR: 138: Not an error 72/571 Test #138: plm-add-vf-b .......................... Passed 0.07 sec test 147 Start 147: plm-adjust-c 147: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1" "-P" "/<>/cmake/RUN_CTEST.cmake" 147: Test timeout computed to be: 1500 144: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 144: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1 144: EXPECTED_ERRNO is 147: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 147: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1 147: EXPECTED_ERRNO is 141: RETVAL: 0 141: STDOUT: Applying piece-wise linear transform... 141: done. 141: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd 141: Finished! 141: 141: STDERR: 141: Not an error 73/571 Test #141: plm-adjust-a .......................... Passed 0.07 sec test 150 Start 150: plm-adjust-d 150: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0" "-P" "/<>/cmake/RUN_CTEST.cmake" 150: Test timeout computed to be: 1500 150: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 150: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0 150: EXPECTED_ERRNO is 144: RETVAL: 0 144: STDOUT: Applying piece-wise linear transform... 144: done. 144: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd 144: Finished! 144: 144: STDERR: 144: Not an error 74/571 Test #144: plm-adjust-b .......................... Passed 0.08 sec test 153 Start 153: plm-adjust-e 153: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5" "-P" "/<>/cmake/RUN_CTEST.cmake" 153: Test timeout computed to be: 1500 147: RETVAL: 0 147: STDOUT: Applying shift=100 and scale=1 ... done. 147: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd 147: Finished! 147: 147: STDERR: 147: Not an error 75/571 Test #147: plm-adjust-c .......................... Passed 0.07 sec test 156 Start 156: plm-adjust-f 156: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5" "-P" "/<>/cmake/RUN_CTEST.cmake" 156: Test timeout computed to be: 1500 153: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 153: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5 153: EXPECTED_ERRNO is 156: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 156: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5 156: EXPECTED_ERRNO is 150: RETVAL: 0 150: STDOUT: Applying piece-wise linear transform... 150: done. 150: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd 150: Finished! 150: 150: STDERR: 150: Not an error 76/571 Test #150: plm-adjust-d .......................... Passed 0.07 sec test 159 Start 159: plm-adjust-g 159: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 159: Test timeout computed to be: 1500 159: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 159: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha 159: EXPECTED_ERRNO is 153: RETVAL: 0 153: STDOUT: Applying shift=1000 and scale=2.5 ... done. 153: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd 153: Finished! 153: 153: STDERR: 153: Not an error 77/571 Test #153: plm-adjust-e .......................... Passed 0.08 sec test 162 Start 162: plm-adjust-h 162: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 162: Test timeout computed to be: 1500 162: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 162: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/<>/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha 162: EXPECTED_ERRNO is 156: RETVAL: 0 156: STDOUT: Performing histogram matching... 156: done. 156: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd 156: Finished! 156: 156: STDERR: 156: Not an error 78/571 Test #156: plm-adjust-f .......................... Passed 0.08 sec test 165 Start 165: plm-adjust-i 165: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 165: Test timeout computed to be: 1500 165: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 165: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd 165: EXPECTED_ERRNO is 159: RETVAL: 0 159: STDOUT: Computing statistics for linear match... 159: Adjusting image. shift = 0.289174; scale = 0.000314475 done. 159: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd 159: Finished! 159: 159: STDERR: 159: Not an error 79/571 Test #159: plm-adjust-g .......................... Passed 0.08 sec test 168 Start 168: plm-adjust-j 168: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off" "-P" "/<>/cmake/RUN_CTEST.cmake" 168: Test timeout computed to be: 1500 168: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 168: PARMS is adjust;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off 168: EXPECTED_ERRNO is 162: RETVAL: 0 162: STDOUT: Computing statistics for linear match... 162: Time = 0.000729 seconds 162: Adjusting image. shift = 0.158838; scale = 0.000442518 done. 162: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd 162: Finished! 162: 162: STDERR: 162: Not an error 80/571 Test #162: plm-adjust-h .......................... Passed 0.08 sec test 171 Start 171: plm-boundary-a 171: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 171: Test timeout computed to be: 1500 171: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 171: PARMS is boundary;--boundary-behavior;adaptive;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha 171: EXPECTED_ERRNO is 165: RETVAL: 0 165: STDOUT: Applying local intensity matching... 165: Time = 0.000530 seconds 165: Time = 0.000471 seconds 165: Time = 0.000358 seconds 165: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd 165: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd 165: done. 165: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd 165: Finished! 165: 165: STDERR: 165: Not an error 81/571 Test #165: plm-adjust-i .......................... Passed 0.10 sec test 174 Start 174: plm-boundary-b 174: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;zero-pad;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 174: Test timeout computed to be: 1500 174: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 174: PARMS is boundary;--boundary-behavior;zero-pad;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha 174: EXPECTED_ERRNO is 171: RETVAL: 0 171: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd 171: 171: STDERR: 171: Not an error 82/571 Test #171: plm-boundary-a ........................ Passed 0.06 sec test 177 Start 177: plm-boundary-c 177: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 177: Test timeout computed to be: 1500 168: RETVAL: 0 168: STDOUT: Applying local intensity matching... 168: Time = 0.000605 seconds 168: Time = 0.000564 seconds 168: Time = 0.000547 seconds 168: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd 168: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd 168: done. 168: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd 168: Finished! 168: 168: STDERR: 168: Not an error 83/571 Test #168: plm-adjust-j .......................... Passed 0.09 sec test 180 Start 180: plm-boundary-d 180: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 180: Test timeout computed to be: 1500 177: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 177: PARMS is boundary;--boundary-behavior;edge-pad;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha 177: EXPECTED_ERRNO is 180: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 180: PARMS is boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha 180: EXPECTED_ERRNO is 174: RETVAL: 0 174: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd 174: 174: STDERR: 174: Not an error 84/571 Test #174: plm-boundary-b ........................ Passed 0.05 sec test 183 Start 183: plm-boundary-e 183: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 183: Test timeout computed to be: 1500 183: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 183: PARMS is boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/<>/obj-x86_64-linux-gnu/Testing/sphere-5.mha 183: EXPECTED_ERRNO is 180: RETVAL: 0 180: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd 180: 180: STDERR: 180: Not an error 85/571 Test #180: plm-boundary-d ........................ Passed 0.05 sec test 189 Start 189: plm-convert-dicom-b 189: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--filenames-without-uids;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS" "-P" "/<>/cmake/RUN_CTEST.cmake" 189: Test timeout computed to be: 1500 177: RETVAL: 0 177: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd 177: 177: STDERR: 177: Not an error 86/571 Test #177: plm-boundary-c ........................ Passed 0.06 sec test 192 Start 192: plm-convert-dicom-c 192: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix" "-P" "/<>/cmake/RUN_CTEST.cmake" 192: Test timeout computed to be: 1500 189: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 189: PARMS is convert;--filenames-without-uids;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS 189: EXPECTED_ERRNO is 192: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 192: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix 192: EXPECTED_ERRNO is 183: RETVAL: 0 183: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd 183: 183: STDERR: 183: Not an error 87/571 Test #183: plm-boundary-e ........................ Passed 0.06 sec test 198 Start 198: plm-convert-dicom-donut-a 198: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 198: Test timeout computed to be: 1500 198: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 198: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd 198: EXPECTED_ERRNO is 189: RETVAL: 0 189: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10026.1659396364.300823RTDOSE 189: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10026.1659396364.300824RTSTRUCT 189: Found DCM_ReferencedFrameOfReferenceSequence! 189: Found DCM_RTReferencedStudySequence! 189: Trying to load rt structure set. 189: Adding structure (1), Foreground 189: Structure 1 has color 255\0\0 189: Trying to load rt dose. 189: Load: DoseGridScaling = 0.000000 189: RTDOSE: dim = 38 38 38 189: ipp = -243.421005 -243.421005 -243.421005 189: spc = 13.157900 13.157900 13.157900 189: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 189: Bits_alloc: 32 189: Bits_stored: 32 189: High_bit: 31 189: Pixel_rep: 0 189: rc = 1, length = 109744, npix = 54872 189: Setting PIH from RDD 189: PIH is: 189: Origin = -243.4211 -243.4211 -243.4211 189: Size = 38 38 38 189: Spacing = 13.1579 13.1579 13.1579 189: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 189: Rt_study_warp: Convert ss_img to cxt. 189: Rt_study_warp: Apply dicom_dir. 189: Rt_study_warp: Set geometry from PIH. 189: Rt_study_warp: Set rasterization geometry. 189: rast_dim = 512 512 7 189: rast_offset = -55.2632 -55.2632 -46.0526 189: rast_spacing = 0.215872 0.215872 13.1579 189: Rt_study_warp: warp and save ss. 189: Warp_and_save_ss: save_ss_img 189: Rt_study_warp: Save dicom. 189: Keyholizing structure 0. 189: Write: DoseGridScaling = 0.000000 189: Finished! 189: 189: STDERR: 189: Not an error 88/571 Test #189: plm-convert-dicom-b ................... Passed 0.08 sec test 201 Start 201: plm-convert-dicom-donut-b 201: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours" "-P" "/<>/cmake/RUN_CTEST.cmake" 201: Test timeout computed to be: 1500 201: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 201: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours 201: EXPECTED_ERRNO is 198: RETVAL: 0 198: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10050.1659396364.359725RTDOSE 198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10050.1659396364.359726RTSTRUCT 198: Found DCM_ReferencedFrameOfReferenceSequence! 198: Found DCM_RTReferencedStudySequence! 198: Trying to load rt structure set. 198: Adding structure (1), Foreground 198: Structure 1 has color 255\0\0 198: Trying to load rt dose. 198: Load: DoseGridScaling = 0.000000 198: RTDOSE: dim = 38 38 38 198: ipp = -25.000000 -25.000000 -25.000000 198: spc = 1.315790 1.315790 1.315790 198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 198: Bits_alloc: 32 198: Bits_stored: 32 198: High_bit: 31 198: Pixel_rep: 0 198: rc = 1, length = 109744, npix = 54872 198: Setting PIH from RDD 198: PIH is: 198: Origin = -25.0000 -25.0000 -25.0000 198: Size = 38 38 38 198: Spacing = 1.3158 1.3158 1.3158 198: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 198: Rt_study_warp: Convert ss_img to cxt. 198: Rt_study_warp: Apply dicom_dir. 198: Rt_study_warp: Set geometry from PIH. 198: Rt_study_warp: Set rasterization geometry. 198: rast_dim = 512 512 14 198: rast_offset = -10.3618 -10.3618 -9.21053 198: rast_spacing = 0.0404759 0.0404759 1.31579 198: Rt_study_warp: warp and save ss. 198: Warp_and_save_ss: seg->rasterize 198: Rasterizing... 198: Converting... 198: Finished rasterization. 198: Warp_and_save_ss: save_ss_img 198: save_ss_img: save_ss_image 198: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd 198: Finished! 198: 198: STDERR: 198: Not an error 89/571 Test #198: plm-convert-dicom-donut-a ............. Passed 0.08 sec test 205 Start 205: plm-convert-cxt 205: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 205: Test timeout computed to be: 1500 205: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 205: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt 205: EXPECTED_ERRNO is 192: RETVAL: 0 192: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10099.1659396364.487710RTDOSE 192: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10099.1659396364.487711RTSTRUCT 192: Found DCM_ReferencedFrameOfReferenceSequence! 192: Found DCM_RTReferencedStudySequence! 192: Trying to load rt structure set. 192: Adding structure (1), Body 192: Adding structure (2), Tumor 192: Adding structure (3), Lung 192: Structure 1 has color 255\0\0 192: Structure 2 has color 255\255\0 192: Structure 3 has color 255\0\255 192: Trying to load rt dose. 192: Load: DoseGridScaling = 0.000000 192: RTDOSE: dim = 100 100 100 192: ipp = -247.500000 -247.500000 -247.500000 192: spc = 5.000000 5.000000 5.000000 192: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 192: Bits_alloc: 32 192: Bits_stored: 32 192: High_bit: 31 192: Pixel_rep: 0 192: rc = 1, length = 2000000, npix = 1000000 192: Setting PIH from RDD 192: PIH is: 192: Origin = -247.5000 -247.5000 -247.5000 192: Size = 100 100 100 192: Spacing = 5.0000 5.0000 5.0000 192: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 192: Rt_study_warp: Convert ss_img to cxt. 192: Rt_study_warp: Apply dicom_dir. 192: Rt_study_warp: Set geometry from PIH. 192: Rt_study_warp: Set rasterization geometry. 192: rast_dim = 512 512 99 192: rast_offset = -157.5 -157.5 -247.5 192: rast_spacing = 0.615234 0.615234 5 192: Rt_study_warp: warp and save ss. 192: Warp_and_save_ss: seg->rasterize 192: Rasterizing... 192: Converting... 192: Finished rasterization. 192: Warp_and_save_ss: save_ss_img 192: save_ss_img: save_prefix 192: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Body.mha 192: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha 192: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Lung.mha 192: Finished! 192: 192: STDERR: 192: Not an error 90/571 Test #192: plm-convert-dicom-c ................... Passed 0.15 sec test 209 Start 209: plm-convert-dose-scale 209: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-dose-img;/<>/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7" "-P" "/<>/cmake/RUN_CTEST.cmake" 209: Test timeout computed to be: 1500 201: RETVAL: 0 201: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10050.1659396364.359725RTDOSE 201: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10050.1659396364.359726RTSTRUCT 201: Found DCM_ReferencedFrameOfReferenceSequence! 201: Found DCM_RTReferencedStudySequence! 201: Trying to load rt structure set. 201: Adding structure (1), Foreground 201: Structure 1 has color 255\0\0 201: Trying to load rt dose. 201: Load: DoseGridScaling = 0.000000 201: RTDOSE: dim = 38 38 38 201: ipp = -25.000000 -25.000000 -25.000000 201: spc = 1.315790 1.315790 1.315790 201: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 201: Bits_alloc: 32 201: Bits_stored: 32 201: High_bit: 31 201: Pixel_rep: 0 201: rc = 1, length = 109744, npix = 54872 201: Setting PIH from RDD 201: PIH is: 201: Origin = -25.0000 -25.0000 -25.0000 201: Size = 38 38 38 201: Spacing = 1.3158 1.3158 1.3158 201: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 201: Rt_study_warp: Convert ss_img to cxt. 201: Rt_study_warp: Apply dicom_dir. 201: Rt_study_warp: Set geometry from PIH. 201: Rt_study_warp: Set rasterization geometry. 201: rast_dim = 512 512 14 201: rast_offset = -10.3618 -10.3618 -9.21053 201: rast_spacing = 0.0404759 0.0404759 1.31579 201: Rt_study_warp: warp and save ss. 201: Warp_and_save_ss: seg->rasterize 201: Rasterizing... 201: Converting... 201: Finished rasterization. 201: Warp_and_save_ss: save_ss_img 201: save_ss_img: save_ss_image 201: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd 201: Finished! 201: 201: STDERR: 201: Not an error 91/571 Test #201: plm-convert-dicom-donut-b ............. Passed 0.08 sec test 212 Start 212: plm-crop-a 212: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9" "-P" "/<>/cmake/RUN_CTEST.cmake" 212: Test timeout computed to be: 1500 209: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 209: PARMS is convert;--input-dose-img;/<>/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7 209: EXPECTED_ERRNO is 212: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 212: PARMS is crop;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9 212: EXPECTED_ERRNO is 205: RETVAL: 0 205: STDOUT: CT_SERIES_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.10245.1659396364.901145| 205: CT_STUDY_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.10245.1659396364.901161| 205: CT_FRAME_OF_REFERENCE_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.10245.1659396364.901162| 205: PATIENT_NAME|ANONYMOUS| 205: PATIENT_ID|PL757867020270026| 205: PATIENT_SEX|O| 205: STUDY_ID|| 205: OFFSET|-55.2632 -55.2632 -46.0526| 205: DIMENSION|512 512 7| 205: SPACING|0.215872 0.215872 13.1579| 205: ROI_NAMES|| 205: Starting structure parsing 205: Starting contour parsing 205: Setting PIH from structure set spacing 205: PIH is: 205: Origin = -55.2632 -55.2632 -46.0526 205: Size = 512 512 7 205: Spacing = 0.2159 0.2159 13.1579 205: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 205: Rt_study_warp: Convert ss_img to cxt. 205: Rt_study_warp: Apply dicom_dir. 205: Rt_study_warp: Set geometry from PIH. 205: Rt_study_warp: Set rasterization geometry. 205: rast_dim = 512 512 7 205: rast_offset = -55.2632 -55.2632 -46.0526 205: rast_spacing = 0.215872 0.215872 13.1579 205: Rt_study_warp: warp and save ss. 205: Warp_and_save_ss: seg->rasterize 205: Rasterizing... 205: Converting... 205: Finished rasterization. 205: Warp_and_save_ss: save_ss_img 205: save_ss_img: save_ss_image 205: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha 205: save_ss_img: save_ss_list 205: Done. 205: Finished! 205: 205: STDERR: 205: Not an error 92/571 Test #205: plm-convert-cxt ....................... Passed 0.08 sec test 215 Start 215: plm-crop-b 215: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7" "-P" "/<>/cmake/RUN_CTEST.cmake" 215: Test timeout computed to be: 1500 215: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 215: PARMS is crop;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7 215: EXPECTED_ERRNO is 209: RETVAL: 0 209: STDOUT: Setting PIH from DOSE 209: PIH is: 209: Origin = -243.4211 -243.4211 -243.4211 209: Size = 38 38 38 209: Spacing = 13.1579 13.1579 13.1579 209: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 209: Rt_study_warp: Saving dose image (/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha) 209: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha 209: Rt_study_warp: warp and save ss. 209: Finished! 209: 209: STDERR: 209: Not an error 93/571 Test #209: plm-convert-dose-scale ................ Passed 0.07 sec test 218 Start 218: plm-crop-c 218: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 218: Test timeout computed to be: 1500 212: RETVAL: 0 212: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha 212: 212: STDERR: 212: Not an error 94/571 Test #212: plm-crop-a ............................ Passed 0.07 sec test 252 Start 252: plm-fill-a 252: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=fill;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 252: Test timeout computed to be: 1500 218: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 218: PARMS is crop;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/<>/obj-x86_64-linux-gnu/Testing/donut-2.mha 218: EXPECTED_ERRNO is 252: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 252: PARMS is fill;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha 252: EXPECTED_ERRNO is 215: RETVAL: 0 215: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha 215: 215: STDERR: 215: Not an error 95/571 Test #215: plm-crop-b ............................ Passed 0.07 sec test 255 Start 255: plm-mask-a 255: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000" "-P" "/<>/cmake/RUN_CTEST.cmake" 255: Test timeout computed to be: 1500 255: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 255: PARMS is mask;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000 255: EXPECTED_ERRNO is 218: RETVAL: 0 218: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha 218: 218: STDERR: 218: Not an error 96/571 Test #218: plm-crop-c ............................ Passed 0.07 sec test 258 Start 258: plm-gamma-a 258: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--compute-full-region;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-12.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-14.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 258: Test timeout computed to be: 1500 252: RETVAL: 0 252: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha 252: Finished! 252: 252: STDERR: 252: Not an error 97/571 Test #252: plm-fill-a ............................ Passed 0.07 sec test 261 Start 261: plm-gamma-b 261: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-12.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-13.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 261: Test timeout computed to be: 1500 258: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 258: PARMS is gamma;--compute-full-region;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-12.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-14.mha 258: EXPECTED_ERRNO is 261: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 261: PARMS is gamma;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-12.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-13.mha 261: EXPECTED_ERRNO is 255: RETVAL: 0 255: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha 255: Finished! 255: 255: STDERR: 255: Not an error 98/571 Test #255: plm-mask-a ............................ Passed 0.07 sec test 268 Start 268: plm-maximum-a 268: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=maximum;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 268: Test timeout computed to be: 1500 268: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 268: PARMS is maximum;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 268: EXPECTED_ERRNO is 110: RETVAL: 0 110: STDOUT: Reconstructing... 110: Processing image 0 110: Processing image 1 110: Processing image 2 110: Processing image 3 110: Processing image 4 110: Processing image 5 110: Processing image 6 110: Processing image 7 110: Processing image 8 110: Processing image 9 110: Processing image 10 110: Processing image 11 110: Processing image 12 110: Processing image 13 110: Processing image 14 110: Processing image 15 110: Processing image 16 110: Processing image 17 110: Processing image 18 110: Processing image 19 110: I/O time (total) = 0.00176215 110: I/O time (per image) = 8.81076e-05 110: Filter time = 0 110: Filter time (per image) = 0 110: Backprojection time = 1.66786 110: Backprojection time (per image) = 0.0833928 110: Writing output volume(s)... 110: done. 110: 110: 110: STDERR: 110: Not an error 99/571 Test #110: fdk-cpu-d ............................. Passed 1.78 sec test 271 Start 271: plm-multiply-a 271: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 271: Test timeout computed to be: 1500 271: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 271: PARMS is multiply;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 271: EXPECTED_ERRNO is 261: RETVAL: 0 261: STDOUT: Gamma dose max is 10.000000 261: Time = 0.000175 seconds 261: Gamma calculation is under progress... 261: analysis threshold = 1.00 Gy 261: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha 261: Pass rate = 0.000000 % 261: 261: STDERR: 261: Not an error 100/571 Test #261: plm-gamma-b ........................... Passed 0.08 sec test 274 Start 274: plm-multiply-vf-a 274: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 274: Test timeout computed to be: 1500 274: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 274: PARMS is multiply;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 274: EXPECTED_ERRNO is 268: RETVAL: 0 268: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd 268: 268: STDERR: 268: Not an error 101/571 Test #268: plm-maximum-a ......................... Passed 0.08 sec test 278 Start 278: plm-reg-align-center 278: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 278: Test timeout computed to be: 1500 278: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 278: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt 278: EXPECTED_ERRNO is 258: RETVAL: 0 258: STDOUT: Gamma dose max is 10.000000 258: Time = 0.000178 seconds 258: Gamma calculation is under progress... 258: analysis threshold = 1.00 Gy 258: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha 258: Pass rate = 100.000000 % 258: 258: STDERR: 258: Not an error 102/571 Test #258: plm-gamma-a ........................... Passed 0.11 sec test 284 Start 284: plm-reg-itk-rigid-a 284: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 284: Test timeout computed to be: 1500 284: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 284: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt 284: EXPECTED_ERRNO is 271: RETVAL: 0 271: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd 271: 271: STDERR: 271: Not an error 103/571 Test #271: plm-multiply-a ........................ Passed 0.08 sec test 289 Start 289: plm-reg-itk-similarity 289: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 289: Test timeout computed to be: 1500 289: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 289: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt 289: EXPECTED_ERRNO is 274: RETVAL: 0 274: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd 274: 274: STDERR: 274: Not an error 104/571 Test #274: plm-multiply-vf-a ..................... Passed 0.08 sec test 294 Start 294: plm-reg-itk-bspline 294: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 294: Test timeout computed to be: 1500 294: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 294: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt 294: EXPECTED_ERRNO is 278: RETVAL: 0 278: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 278: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-6.mha 278: Launching registration worker thread 278: Inside registration worker thread 278: Doing registration stage 278: [1] xf_in->m_type = 0, xf_out->m_type = 0 278: [2] xf_out->m_type = 1, xf_in->m_type = 0 278: Writing transformation ... 278: ** Registration worker thread finished. 278: Warping... 278: plm_warp_itk: xform_to_itk_vf 278: plm_warp_itk: convert_to_itk 278: plm_warp_itk: warping... 278: Saving image... 278: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha 278: Load: 0.020169 278: Run: 0.000558853 278: Save: 0.00420713 278: Total: 0.024935 278: Finished! 278: 278: STDERR: 278: Not an error 105/571 Test #278: plm-reg-align-center .................. Passed 0.08 sec test 297 Start 297: plm-reg-itk-demons 297: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 297: Test timeout computed to be: 1500 297: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 297: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt 297: EXPECTED_ERRNO is 284: RETVAL: 0 284: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 284: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 284: Launching registration worker thread 284: Inside registration worker thread 284: Doing registration stage 284: [1] xf_in->m_type = 0, xf_out->m_type = 0 284: Fixed image for this stage: 284: Dim = 19 19 19 284: Origin = -236.842 -236.842 -236.842 284: Spacing = 26.3158 26.3158 26.3158 284: Direction Cosines = 284: 1 0 0 284: 0 1 0 284: 0 0 1 284: Moving image for this stage: 284: Dim = 19 19 19 284: Origin = -236.842 -236.842 -236.842 284: Spacing = 26.3158 26.3158 26.3158 284: Direction Cosines = 284: 1 0 0 284: 0 1 0 284: 0 0 1 284: Initial Parameters = [0, 0, 0, 0, 0, 0] 284: Starting ITK registration 284: StartEvent: [0, 0, 0, 0, 0, 0] 284: MSE [ 0, 0,10.00] 1339.481 [-2.3804099998839353e-20, 8.106231711095265e-8, -8.106231711602886e-8, 9.999999999999996, -1.0973359818106973e-14, -1.0957496630802156e-14] * 284: MSE [ 1, 1,10.00] 368.982 [3.883972256494134e-18, 1.6278511949859553e-7, -1.6278512055872085e-7, 19.999999999999915, 8.96985283748478e-7, 8.969852835505952e-7] -970.50 * 284: MSE [ 2, 2, 5.00] 181.733 [-2.294834318226555e-17, 5.896377564740356e-7, -5.896377772709944e-7, 15.000000000001307, 0.0000033932258793615123, 0.000003393225829518667] -187.25 * 284: MSE [ 3, 3, 2.50] 183.524 [-2.775238432275499e-17, 8.131742571000743e-7, -8.131742896123878e-7, 17.499999999998433, 0.0000060365370064895905, 0.000006036536834321281] 1.79 (tol) 284: EndEvent: [-2.775238432275499e-17, 8.131742571000743e-7, -8.131742896123878e-7, 17.499999999998433, 0.0000060365370064895905, 0.000006036536834321281] 284: VersorRigid3DTransformOptimizer: Maximum number of iterations (1) exceeded. 284: ITK registration complete 284: [2] xf_out->m_type = 2, xf_in->m_type = 0 284: Warping... 284: plm_warp_itk: xform_to_itk_vf 284: plm_warp_itk: convert_to_itk 284: plm_warp_itk: warping... 284: Saving image... 284: Trying to write image to plm-reg-itk-rigid-a-intermediate-img.mha 284: Doing registration stage 284: [1] xf_in->m_type = 2, xf_out->m_type = 0 284: Fixed image for this stage: 284: Dim = 38 38 38 284: Origin = -243.421 -243.421 -243.421 284: Spacing = 13.1579 13.1579 13.1579 284: Direction Cosines = 284: 1 0 0 284: 0 1 0 284: 0 0 1 284: Moving image for this stage: 284: Dim = 38 38 38 284: Origin = -243.421 -243.421 -243.421 284: Spacing = 13.1579 13.1579 13.1579 284: Direction Cosines = 284: 1 0 0 284: 0 1 0 284: 0 0 1 284: Initial Parameters = [3.883972256494134e-18, 1.6278511949859553e-7, -1.6278512055872085e-7, 19.999999999999915, 8.96985283748478e-7, 8.969852835505952e-7] 284: Starting ITK registration 284: StartEvent: [3.883972256494134e-18, 1.6278511949859553e-7, -1.6278512055872085e-7, 19.999999999999915, 8.96985283748478e-7, 8.969852835505952e-7] 284: MSE [ 0, 0,10.00] 616.559 [2.9266209190299e-16, -0.0000033302360497116433, 0.000003330235947563619, 10.000000000052827, -0.000021019174512103278, -0.000021019174449825875] * 284: MSE [ 1, 1, 5.00] 1335.870 [9.50914110371902e-17, -0.000001993357671856476, 0.0000019933576419259957, 14.9999999999192, -0.00004672874495547822, -0.000046728745990334315] 719.31 284: MSE [ 2, 2, 5.00] 909.428 [-2.030117223412644e-17, -9.215023617397066e-7, 9.215023821951479e-7, 19.99999999966778, -0.000011337953197209779, -0.000011337953397906165] -426.44 284: MSE [ 3, 3, 2.50] 616.561 [4.983338164130592e-16, 0.0000042409091867923676, -0.000004240909079827766, 17.500000002328246, 0.00006956053055493293, 0.00006956053212236896] -292.87 284: MSE [ 4, 4, 1.25] 668.182 [1.782378860039461e-16, 0.000003139906341325196, -0.000003139906306002585, 18.75000000156098, 0.00003866989486834397, 0.00003866989574458415] 51.62 284: EndEvent: [1.782378860039461e-16, 0.000003139906341325196, -0.000003139906306002585, 18.75000000156098, 0.00003866989486834397, 0.00003866989574458415] 284: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded. 284: ITK registration complete 284: [2] xf_out->m_type = 2, xf_in->m_type = 2 284: ** Registration worker thread finished. 284: Writing transformation ... 284: Warping... 284: plm_warp_itk: xform_to_itk_vf 284: plm_warp_itk: convert_to_itk 284: plm_warp_itk: warping... 284: Saving image... 284: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha 284: Saving vf... 284: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-vf.mha 284: Load: 0.0229468 284: Run: 0.0551121 284: Save: 0.00467086 284: Total: 0.0827298 284: Finished! 284: 284: STDERR: 284: Not an error 106/571 Test #284: plm-reg-itk-rigid-a ................... Passed 0.14 sec test 307 Start 307: plm-bsp-mse-c 307: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 307: Test timeout computed to be: 1500 307: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 307: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt 307: EXPECTED_ERRNO is 289: RETVAL: 0 289: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2s.mha 289: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 289: Launching registration worker thread 289: Inside registration worker thread 289: Doing registration stage 289: [1] xf_in->m_type = 0, xf_out->m_type = 0 289: Fixed image for this stage: 289: Dim = 19 19 19 289: Origin = -236.842 -236.842 -236.842 289: Spacing = 26.316 26.316 26.316 289: Direction Cosines = 289: 1 0 0 289: 0 1 0 289: 0 0 1 289: Moving image for this stage: 289: Dim = 19 19 19 289: Origin = -236.842 -236.842 -236.842 289: Spacing = 26.3158 26.3158 26.3158 289: Direction Cosines = 289: 1 0 0 289: 0 1 0 289: 0 0 1 289: Initial Parameters = [0, 0, 0, 0, 0, 0, 1] 289: Starting ITK registration 289: StartEvent: [] 289: MSE [ 1, 0,-1.00] 50982.091 [0, 0, 0, 0, 0, 0, 1] * 289: MSE [ 2, 1,-1.00] 43798.343 [0, 0, 0, -0.4593838948324258, 0.47067772433152183, -1.9737006269275084, 0.8764184123566656] -7183.75 * 289: MSE [ 3, 2,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] -4768.34 * 289: MSE [ 4, 3,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] 0.00 289: MSE [ 5, 4,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] -2802.31 * 289: MSE [ 6, 5,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 0.00 (tol) 289: EndEvent: [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 289: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. 289: ITK registration complete 289: [2] xf_out->m_type = 4, xf_in->m_type = 0 289: Warping... 289: plm_warp_itk: xform_to_itk_vf 289: plm_warp_itk: convert_to_itk 289: plm_warp_itk: warping... 289: Saving image... 289: Trying to write image to plm-reg-itk-similarity-intermediate-img.mha 289: Doing registration stage 289: [1] xf_in->m_type = 4, xf_out->m_type = 0 289: Fixed image for this stage: 289: Dim = 38 38 38 289: Origin = -243.421 -243.421 -243.421 289: Spacing = 13.158 13.158 13.158 289: Direction Cosines = 289: 1 0 0 289: 0 1 0 289: 0 0 1 289: Moving image for this stage: 289: Dim = 38 38 38 289: Origin = -243.421 -243.421 -243.421 289: Spacing = 13.1579 13.1579 13.1579 289: Direction Cosines = 289: 1 0 0 289: 0 1 0 289: 0 0 1 289: Initial Parameters = [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 289: Starting ITK registration 289: StartEvent: [] 289: MSE [ 1, 0,-1.00] 53402.170 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] * 289: MSE [ 2, 1,-1.00] 40041.651 [0, 0, 0, -1.9937447986384402, -0.27976460247132845, -4.526111859506667, 0.6346268196936601] -13360.52 * 289: MSE [ 3, 2,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] -7807.38 * 289: MSE [ 4, 3,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] 0.00 289: MSE [ 5, 4,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] -762.84 * 289: MSE [ 6, 5,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] 0.00 (tol) 289: EndEvent: [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] 289: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. 289: ITK registration complete 289: [2] xf_out->m_type = 4, xf_in->m_type = 4 289: Warping... 289: plm_warp_itk: xform_to_itk_vf 289: plm_warp_itk: convert_to_itk 289: plm_warp_itk: warping... 289: Saving image... 289: Trying to write image to plm-reg-itk-similarity-img.mha 289: ** Registration worker thread finished. 289: Writing transformation ... 289: Warping... 289: plm_warp_itk: xform_to_itk_vf 289: plm_warp_itk: convert_to_itk 289: plm_warp_itk: warping... 289: Saving image... 289: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-img.mha 289: Saving vf... 289: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-vf.mha 289: Load: 0.0187979 289: Run: 0.103518 289: Save: 0.00451303 289: Total: 0.126829 289: Finished! 289: 289: STDERR: 289: Not an error 107/571 Test #289: plm-reg-itk-similarity ................ Passed 0.18 sec test 310 Start 310: plm-bsp-mse-g 310: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 310: Test timeout computed to be: 1500 310: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 310: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt 310: EXPECTED_ERRNO is 297: RETVAL: 0 297: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 297: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 297: Launching registration worker thread 297: Inside registration worker thread 297: Doing registration stage 297: [1] xf_in->m_type = 0, xf_out->m_type = 0 297: Ready to start registration. 297: MSE [ 0] 18945.891 [ 0.016 secs] 297: MSE [ 1] 9752.760 [ 0.021 secs] 297: MSE [ 2] 3751.365 [ 0.027 secs] 297: MSE [ 3] 960.721 [ 0.017 secs] 297: MSE [ 4] 204.827 [ 0.020 secs] 297: Done with registration. Writing output... 297: Deformation stats (out) 297: VF_MAX = 97.6986 VF_AVG = 31.9237 297: [2] xf_out->m_type = 8, xf_in->m_type = 0 297: ** Registration worker thread finished. 297: Warping... 297: plm_warp_itk: xform_to_itk_vf 297: plm_warp_itk: convert_to_itk 297: plm_warp_itk: warping... 297: Saving image... 297: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha 297: Saving vf... 297: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-vf.mha 297: Load: 0.018769 297: Run: 0.100671 297: Save: 0.0158558 297: Total: 0.135296 297: Finished! 297: 297: STDERR: 297: Not an error 108/571 Test #297: plm-reg-itk-demons .................... Passed 0.19 sec test 316 Start 316: plm-bsp-mse-i 316: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 316: Test timeout computed to be: 1500 316: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 316: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt 316: EXPECTED_ERRNO is 307: RETVAL: 0 307: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 307: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 307: Launching registration worker thread 307: Inside registration worker thread 307: Doing registration stage 307: [1] xf_in->m_type = 0, xf_out->m_type = 0 307: RESAMPLE 1 1: (2 2 2), (2 2 2) 307: RESAMPLE 1 1: (2 2 2), (2 2 2) 307: volume_calc_grad complete. 307: bspline_xform_initialize 307: rdims = (2,2,2) 307: vox_per_rgn = (11,11,11) 307: cdims = (5 5 5) 307: Algorithm flavor = c 307: Threading = 0 307: >> Checking JH allocation 307: BSPLINE PARMS 307: max_its = 5 307: max_feval = 5 307: BSPLINE XFORM HEADER 307: vox_per_rgn = 11 11 11 307: roi_offset = 0 0 0 307: roi_dim = 19 19 19 307: img_dc = 1 0 0 0 1 0 0 0 1 307: BST METRICS 307: MET 110100 MSE 1.000000 307: Setting nmax, mmax = 375 21 307: >>> START 307: This problem is unconstrained. 307: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.004 s ] 307: CMIN 0.00 CAVG 0.00 CMAX 0.00 307: LSD 0.00 307: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.002 s ] 307: CMIN -0.07 CAVG 0.01 CMAX 0.68 307: LSD 1.00 307: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.002 s ] 307: CMIN -0.35 CAVG 0.05 CMAX 3.40 307: LSD 5.00 307: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.002 s ] 307: CMIN -1.48 CAVG 0.20 CMAX 14.26 307: LSD 21.00 307: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.004 s ] 307: CMIN -1.74 CAVG 0.44 CMAX 32.50 307: LSD 27.95 307: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.002 s ] 307: CMIN -1.73 CAVG 0.34 CMAX 23.99 307: LSD 13.11 307: [2] xf_out->m_type = 9, xf_in->m_type = 0 307: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 307: bspline_xform_initialize 307: rdims = (2,2,2) 307: vox_per_rgn = (22,22,22) 307: cdims = (5 5 5) 307: Writing transformation ... 307: Warping... 307: Running: plm_warp_native 307: Converting input image... 307: Converting xform... 307: bspline_xform_initialize 307: rdims = (2,2,2) 307: vox_per_rgn = (22,22,22) 307: cdims = (5 5 5) 307: Creating output vf... 307: Creating output volume... 307: Running native warper... 307: ** Registration worker thread finished. 307: bspline_warp complete. 307: Back convert to original type... 307: > Convert vf to itk 307: > Conversion complete. 307: plm_warp_native is complete. 307: Saving image... 307: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha 307: Saving vf... 307: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-vf.mha 307: Load: 0.0187399 307: Run: 0.034143 307: Save: 0.0675321 307: Total: 0.120415 307: Finished! 307: 307: STDERR: 307: Not an error 109/571 Test #307: plm-bsp-mse-c ......................... Passed 0.19 sec test 319 Start 319: plm-bsp-mse-k 319: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 319: Test timeout computed to be: 1500 319: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 319: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt 319: EXPECTED_ERRNO is 319: RETVAL: 0 319: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 319: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 319: Launching registration worker thread 319: Inside registration worker thread 319: Doing registration stage 319: [1] xf_in->m_type = 0, xf_out->m_type = 0 319: RESAMPLE 1 1: (2 2 2), (2 2 2) 319: RESAMPLE 1 1: (2 2 2), (2 2 2) 319: volume_calc_grad complete. 319: bspline_xform_initialize 319: rdims = (2,2,2) 319: vox_per_rgn = (11,11,11) 319: cdims = (5 5 5) 319: Algorithm flavor = k 319: Threading = 0 319: >> Checking JH allocation 319: BSPLINE PARMS 319: max_its = 5 319: max_feval = 5 319: BSPLINE XFORM HEADER 319: vox_per_rgn = 11 11 11 319: roi_offset = 0 0 0 319: roi_dim = 19 19 19 319: img_dc = 1 0 0 0 1 0 0 0 1 319: BST METRICS 319: MET 110100 MSE 1.000000 319: Setting nmax, mmax = 375 21 319: >>> START 319: This problem is unconstrained. 319: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.002 s ] 319: CMIN 0.00 CAVG 0.00 CMAX 0.00 319: LSD 0.00 319: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.002 s ] 319: CMIN -0.07 CAVG 0.01 CMAX 0.68 319: LSD 1.00 319: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.002 s ] 319: CMIN -0.35 CAVG 0.05 CMAX 3.40 319: LSD 5.00 319: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.018 s ] 319: CMIN -1.48 CAVG 0.20 CMAX 14.26 319: LSD 21.00 319: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.002 s ] 319: CMIN -1.74 CAVG 0.44 CMAX 32.50 319: LSD 27.95 319: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.002 s ] 319: CMIN -1.73 CAVG 0.34 CMAX 23.99 319: LSD 13.11 319: [2] xf_out->m_type = 9, xf_in->m_type = 0 319: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 319: bspline_xform_initialize 319: rdims = (2,2,2) 319: vox_per_rgn = (22,22,22) 319: cdims = (5 5 5) 319: ** Registration worker thread finished. 319: Writing transformation ... 319: Warping... 319: Running: plm_warp_native 319: Converting input image... 319: Converting xform... 319: bspline_xform_initialize 319: rdims = (2,2,2) 319: vox_per_rgn = (22,22,22) 319: cdims = (5 5 5) 319: Creating output vf... 319: Creating output volume... 319: Running native warper... 319: bspline_warp complete. 319: Back convert to original type... 319: > Convert vf to itk 319: > Conversion complete. 319: plm_warp_native is complete. 319: Saving image... 319: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha 319: Saving vf... 319: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-vf.mha 319: Load: 0.0424249 319: Run: 0.0659249 319: Save: 0.0529292 319: Total: 0.161279 319: Finished! 319: 319: STDERR: 319: Not an error 110/571 Test #319: plm-bsp-mse-k ......................... Passed 0.27 sec test 322 Start 322: plm-bsp-mse-l 322: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 322: Test timeout computed to be: 1500 310: RETVAL: 0 310: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 310: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 310: Launching registration worker thread 310: Inside registration worker thread 310: Doing registration stage 310: [1] xf_in->m_type = 0, xf_out->m_type = 0 310: RESAMPLE 1 1: (2 2 2), (2 2 2) 310: RESAMPLE 1 1: (2 2 2), (2 2 2) 310: volume_calc_grad complete. 310: bspline_xform_initialize 310: rdims = (2,2,2) 310: vox_per_rgn = (11,11,11) 310: cdims = (5 5 5) 310: Algorithm flavor = g 310: Threading = 0 310: >> Checking JH allocation 310: BSPLINE PARMS 310: max_its = 5 310: max_feval = 5 310: BSPLINE XFORM HEADER 310: vox_per_rgn = 11 11 11 310: roi_offset = 0 0 0 310: roi_dim = 19 19 19 310: img_dc = 1 0 0 0 1 0 0 0 1 310: BST METRICS 310: MET 110100 MSE 1.000000 310: Setting nmax, mmax = 375 21 310: >>> START 310: This problem is unconstrained. 310: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.043 s ] 310: CMIN 0.00 CAVG 0.00 CMAX 0.00 310: LSD 0.00 310: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.016 s ] 310: CMIN -0.07 CAVG 0.01 CMAX 0.68 310: LSD 1.00 310: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.032 s ] 310: CMIN -0.35 CAVG 0.05 CMAX 3.40 310: LSD 5.00 310: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.032 s ] 310: CMIN -1.48 CAVG 0.20 CMAX 14.26 310: LSD 21.00 310: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.036 s ] 310: CMIN -1.74 CAVG 0.44 CMAX 32.50 310: LSD 27.95 310: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.022 s ] 310: CMIN -1.73 CAVG 0.34 CMAX 23.99 310: LSD 13.11 310: [2] xf_out->m_type = 9, xf_in->m_type = 0 310: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 310: bspline_xform_initialize 310: rdims = (2,2,2) 310: vox_per_rgn = (22,22,22) 310: cdims = (5 5 5) 310: ** Registration worker thread finished. 310: Writing transformation ... 310: Warping... 310: Running: plm_warp_native 310: Converting input image... 310: Converting xform... 310: bspline_xform_initialize 310: rdims = (2,2,2) 310: vox_per_rgn = (22,22,22) 310: cdims = (5 5 5) 310: Creating output vf... 310: Creating output volume... 310: Running native warper... 310: bspline_warp complete. 310: Back convert to original type... 310: > Convert vf to itk 310: > Conversion complete. 310: plm_warp_native is complete. 310: Saving image... 310: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha 310: Saving vf... 310: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-vf.mha 310: Load: 0.031929 310: Run: 0.231401 310: Save: 0.0369709 310: Total: 0.300301 310: Finished! 310: 310: STDERR: 310: Not an error 111/571 Test #310: plm-bsp-mse-g ......................... Passed 0.40 sec test 333 Start 333: plm-bsp-mi-c 333: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 333: Test timeout computed to be: 1500 322: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 322: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt 322: EXPECTED_ERRNO is 333: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 333: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt 333: EXPECTED_ERRNO is 316: RETVAL: 0 316: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 316: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 316: Launching registration worker thread 316: Inside registration worker thread 316: Doing registration stage 316: [1] xf_in->m_type = 0, xf_out->m_type = 0 316: RESAMPLE 1 1: (2 2 2), (2 2 2) 316: RESAMPLE 1 1: (2 2 2), (2 2 2) 316: volume_calc_grad complete. 316: bspline_xform_initialize 316: rdims = (2,2,2) 316: vox_per_rgn = (11,11,11) 316: cdims = (5 5 5) 316: Algorithm flavor = i 316: Threading = 0 316: >> Checking JH allocation 316: BSPLINE PARMS 316: max_its = 5 316: max_feval = 5 316: BSPLINE XFORM HEADER 316: vox_per_rgn = 11 11 11 316: roi_offset = 0 0 0 316: roi_dim = 19 19 19 316: img_dc = 1 0 0 0 1 0 0 0 1 316: BST METRICS 316: MET 110100 MSE 1.000000 316: Setting nmax, mmax = 375 21 316: >>> START 316: This problem is unconstrained. 316: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.036 s ] 316: CMIN 0.00 CAVG 0.00 CMAX 0.00 316: LSD 0.00 316: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.024 s ] 316: CMIN -0.07 CAVG 0.01 CMAX 0.68 316: LSD 1.00 316: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.028 s ] 316: CMIN -0.35 CAVG 0.05 CMAX 3.40 316: LSD 5.00 316: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.015 s ] 316: CMIN -1.48 CAVG 0.20 CMAX 14.26 316: LSD 21.00 316: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.053 s ] 316: CMIN -1.74 CAVG 0.44 CMAX 32.50 316: LSD 27.95 316: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.046 s ] 316: CMIN -1.73 CAVG 0.34 CMAX 23.99 316: LSD 13.11 316: [2] xf_out->m_type = 9, xf_in->m_type = 0 316: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 316: bspline_xform_initialize 316: rdims = (2,2,2) 316: vox_per_rgn = (22,22,22) 316: cdims = (5 5 5) 316: ** Registration worker thread finished. 316: Writing transformation ... 316: Warping... 316: Running: plm_warp_native 316: Converting input image... 316: Converting xform... 316: bspline_xform_initialize 316: rdims = (2,2,2) 316: vox_per_rgn = (22,22,22) 316: cdims = (5 5 5) 316: Creating output vf... 316: Creating output volume... 316: Running native warper... 316: bspline_warp complete. 316: Back convert to original type... 316: > Convert vf to itk 316: > Conversion complete. 316: plm_warp_native is complete. 316: Saving image... 316: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha 316: Saving vf... 316: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-vf.mha 316: Load: 0.032661 316: Run: 0.231221 316: Save: 0.016778 316: Total: 0.28066 316: Finished! 316: 316: STDERR: 316: Not an error 112/571 Test #316: plm-bsp-mse-i ......................... Passed 0.39 sec test 339 Start 339: plm-bsp-mi-k 339: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 339: Test timeout computed to be: 1500 339: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 339: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt 339: EXPECTED_ERRNO is 333: RETVAL: 0 333: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 333: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha 333: Launching registration worker thread 333: Inside registration worker thread 333: Doing registration stage 333: [1] xf_in->m_type = 0, xf_out->m_type = 0 333: RESAMPLE 1 1: (2 2 2), (2 2 2) 333: RESAMPLE 1 1: (2 2 2), (2 2 2) 333: volume_calc_grad complete. 333: bspline_xform_initialize 333: rdims = (5,5,5) 333: vox_per_rgn = (4,4,4) 333: cdims = (8 8 8) 333: Algorithm flavor = c 333: Threading = 0 333: >> Checking JH allocation 333: >> Performing JH allocation 333: BSPLINE PARMS 333: max_its = 10 333: max_feval = 10 333: BSPLINE XFORM HEADER 333: vox_per_rgn = 4 4 4 333: roi_offset = 0 0 0 333: roi_dim = 19 19 19 333: img_dc = 1 0 0 0 1 0 0 0 1 333: BST METRICS 333: MET 110100 MI 1.000000 333: >> Performing JH initialization 333: Setting nmax, mmax = 1536 41 333: >>> START 333: This problem is unconstrained. 333: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.004 s ] 333: CMIN 0.01 CAVG 0.01 CMAX 0.01 333: LSD 0.00 333: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.010 s ] 333: CMIN -0.26 CAVG 0.01 CMAX 0.05 333: LSD 1.00 333: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.004 s ] 333: CMIN -0.04 CAVG 0.01 CMAX 0.02 333: LSD 0.18 333: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.004 s ] 333: CMIN -0.01 CAVG 0.01 CMAX 0.01 333: LSD 0.09 333: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.004 s ] 333: CMIN -0.01 CAVG 0.01 CMAX 0.02 333: LSD 0.02 333: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.004 s ] 333: CMIN -0.01 CAVG 0.01 CMAX 0.02 333: LSD 0.02 333: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.004 s ] 333: CMIN -0.01 CAVG 0.01 CMAX 0.02 333: LSD 0.02 333: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.004 s ] 333: CMIN -0.03 CAVG 0.01 CMAX 0.04 333: LSD 0.14 333: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.004 s ] 333: CMIN -0.03 CAVG 0.01 CMAX 0.05 333: LSD 0.04 333: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.008 s ] 333: CMIN -0.04 CAVG 0.01 CMAX 0.06 333: LSD 0.03 333: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.008 s ] 333: CMIN -0.04 CAVG 0.01 CMAX 0.07 333: LSD 0.05 333: [2] xf_out->m_type = 9, xf_in->m_type = 0 333: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 333: bspline_xform_initialize 333: rdims = (5,5,5) 333: vox_per_rgn = (8,8,8) 333: cdims = (8 8 8) 333: ** Registration worker thread finished. 333: Writing transformation ... 333: Warping... 333: Running: plm_warp_native 333: Converting input image... 333: Converting xform... 333: bspline_xform_initialize 333: rdims = (5,5,5) 333: vox_per_rgn = (8,8,8) 333: cdims = (8 8 8) 333: Creating output vf... 333: Creating output volume... 333: Running native warper... 333: bspline_warp complete. 333: Back convert to original type... 333: > Convert vf to itk 333: > Conversion complete. 333: plm_warp_native is complete. 333: Saving image... 333: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha 333: Saving vf... 333: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-vf.mha 333: Load: 0.018899 333: Run: 0.0807528 333: Save: 0.0574899 333: Total: 0.157142 333: Finished! 333: 333: STDERR: 333: Not an error 113/571 Test #333: plm-bsp-mi-c .......................... Passed 0.26 sec test 342 Start 342: plm-bsp-gm-k 342: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 342: Test timeout computed to be: 1500 342: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 342: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt 342: EXPECTED_ERRNO is 322: RETVAL: 0 322: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 322: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 322: Launching registration worker thread 322: Inside registration worker thread 322: Doing registration stage 322: [1] xf_in->m_type = 0, xf_out->m_type = 0 322: RESAMPLE 1 1: (2 2 2), (2 2 2) 322: RESAMPLE 1 1: (2 2 2), (2 2 2) 322: volume_calc_grad complete. 322: bspline_xform_initialize 322: rdims = (2,2,2) 322: vox_per_rgn = (11,11,11) 322: cdims = (5 5 5) 322: Algorithm flavor = l 322: Threading = 0 322: >> Checking JH allocation 322: BSPLINE PARMS 322: max_its = 5 322: max_feval = 5 322: BSPLINE XFORM HEADER 322: vox_per_rgn = 11 11 11 322: roi_offset = 0 0 0 322: roi_dim = 19 19 19 322: img_dc = 1 0 0 0 1 0 0 0 1 322: BST METRICS 322: MET 110100 MSE 1.000000 322: Setting nmax, mmax = 375 21 322: >>> START 322: This problem is unconstrained. 322: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.002 s ] 322: CMIN 0.00 CAVG 0.00 CMAX 0.00 322: LSD 0.00 322: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.005 s ] 322: CMIN -0.07 CAVG 0.01 CMAX 0.68 322: LSD 1.00 322: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.002 s ] 322: CMIN -0.35 CAVG 0.05 CMAX 3.40 322: LSD 5.00 322: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.002 s ] 322: CMIN -1.48 CAVG 0.20 CMAX 14.26 322: LSD 21.00 322: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.006 s ] 322: CMIN -1.74 CAVG 0.44 CMAX 32.50 322: LSD 27.95 322: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.002 s ] 322: CMIN -1.73 CAVG 0.34 CMAX 23.99 322: LSD 13.11 322: [2] xf_out->m_type = 9, xf_in->m_type = 0 322: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 322: bspline_xform_initialize 322: rdims = (2,2,2) 322: vox_per_rgn = (22,22,22) 322: cdims = (5 5 5) 322: ** Registration worker thread finished. 322: Writing transformation ... 322: Warping... 322: Running: plm_warp_native 322: Converting input image... 322: Converting xform... 322: bspline_xform_initialize 322: rdims = (2,2,2) 322: vox_per_rgn = (22,22,22) 322: cdims = (5 5 5) 322: Creating output vf... 322: Creating output volume... 322: Running native warper... 322: bspline_warp complete. 322: Back convert to original type... 322: > Convert vf to itk 322: > Conversion complete. 322: plm_warp_native is complete. 322: Saving image... 322: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha 322: Saving vf... 322: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-vf.mha 322: Load: 0.040535 322: Run: 0.070116 322: Save: 0.0654171 322: Total: 0.176068 322: Finished! 322: 322: STDERR: 322: Not an error 114/571 Test #322: plm-bsp-mse-l ......................... Passed 0.30 sec test 347 Start 347: plm-bsp-openmp 347: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/Testing/Data/plm-bsp-openmp.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 347: Test timeout computed to be: 1500 347: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 347: PARMS is /<>/Testing/Data/plm-bsp-openmp.txt 347: EXPECTED_ERRNO is 339: RETVAL: 0 339: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 339: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha 339: Launching registration worker thread 339: Inside registration worker thread 339: Doing registration stage 339: [1] xf_in->m_type = 0, xf_out->m_type = 0 339: RESAMPLE 1 1: (2 2 2), (2 2 2) 339: RESAMPLE 1 1: (2 2 2), (2 2 2) 339: volume_calc_grad complete. 339: bspline_xform_initialize 339: rdims = (5,5,5) 339: vox_per_rgn = (4,4,4) 339: cdims = (8 8 8) 339: Algorithm flavor = k 339: Threading = 0 339: >> Checking JH allocation 339: >> Performing JH allocation 339: BSPLINE PARMS 339: max_its = 10 339: max_feval = 10 339: BSPLINE XFORM HEADER 339: vox_per_rgn = 4 4 4 339: roi_offset = 0 0 0 339: roi_dim = 19 19 19 339: img_dc = 1 0 0 0 1 0 0 0 1 339: BST METRICS 339: MET 110100 MI 1.000000 339: >> Performing JH initialization 339: Setting nmax, mmax = 1536 41 339: >>> START 339: This problem is unconstrained. 339: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.009 s ] 339: CMIN 0.01 CAVG 0.01 CMAX 0.01 339: LSD 0.00 339: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.007 s ] 339: CMIN -0.26 CAVG 0.01 CMAX 0.05 339: LSD 1.00 339: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.005 s ] 339: CMIN -0.04 CAVG 0.01 CMAX 0.02 339: LSD 0.18 339: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.004 s ] 339: CMIN -0.01 CAVG 0.01 CMAX 0.01 339: LSD 0.09 339: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.031 s ] 339: CMIN -0.01 CAVG 0.01 CMAX 0.02 339: LSD 0.02 339: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.004 s ] 339: CMIN -0.01 CAVG 0.01 CMAX 0.02 339: LSD 0.02 339: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.032 s ] 339: CMIN -0.01 CAVG 0.01 CMAX 0.02 339: LSD 0.02 339: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.004 s ] 339: CMIN -0.03 CAVG 0.01 CMAX 0.04 339: LSD 0.14 339: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.006 s ] 339: CMIN -0.03 CAVG 0.01 CMAX 0.05 339: LSD 0.04 339: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.004 s ] 339: CMIN -0.04 CAVG 0.01 CMAX 0.06 339: LSD 0.03 339: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.004 s ] 339: CMIN -0.04 CAVG 0.01 CMAX 0.07 339: LSD 0.05 339: [2] xf_out->m_type = 9, xf_in->m_type = 0 339: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 339: bspline_xform_initialize 339: rdims = (5,5,5) 339: vox_per_rgn = (8,8,8) 339: cdims = (8 8 8) 339: ** Registration worker thread finished. 339: Writing transformation ... 339: Warping... 339: Running: plm_warp_native 339: Converting input image... 339: Converting xform... 339: bspline_xform_initialize 339: rdims = (5,5,5) 339: vox_per_rgn = (8,8,8) 339: cdims = (8 8 8) 339: Creating output vf... 339: Creating output volume... 339: Running native warper... 339: bspline_warp complete. 339: Back convert to original type... 339: > Convert vf to itk 339: > Conversion complete. 339: plm_warp_native is complete. 339: Saving image... 339: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha 339: Saving vf... 339: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-vf.mha 339: Load: 0.0179589 339: Run: 0.121571 339: Save: 0.0471759 339: Total: 0.186706 339: Finished! 339: 339: STDERR: 339: Not an error 115/571 Test #339: plm-bsp-mi-k .......................... Passed 0.29 sec test 354 Start 354: plm-bsp-ushort 354: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/Testing/Data/plm-bsp-ushort.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 354: Test timeout computed to be: 1500 354: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 354: PARMS is /<>/Testing/Data/plm-bsp-ushort.txt 354: EXPECTED_ERRNO is 342: RETVAL: 0 342: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 342: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-3.mha 342: Launching registration worker thread 342: Inside registration worker thread 342: Doing registration stage 342: [1] xf_in->m_type = 0, xf_out->m_type = 0 342: RESAMPLE 1 1: (2 2 2), (2 2 2) 342: RESAMPLE 1 1: (2 2 2), (2 2 2) 342: volume_calc_grad_mag complete. 342: volume_calc_grad_mag complete. 342: volume_calc_grad complete. 342: bspline_xform_initialize 342: rdims = (5,5,5) 342: vox_per_rgn = (4,4,4) 342: cdims = (8 8 8) 342: Algorithm flavor = k 342: Threading = 0 342: >> Checking JH allocation 342: BSPLINE PARMS 342: max_its = 20 342: max_feval = 20 342: BSPLINE XFORM HEADER 342: vox_per_rgn = 4 4 4 342: roi_offset = 0 0 0 342: roi_dim = 19 19 19 342: img_dc = 1 0 0 0 1 0 0 0 1 342: BST METRICS 342: MET 110100 GM 1.000000 342: Setting nmax, mmax = 1536 41 342: >>> START 342: This problem is unconstrained. 342: [ 0, 0] GM 172.628 NV 6859 GM -29.170 GN 4.3 [ 0.002 s ] 342: CMIN 0.00 CAVG 0.00 CMAX 0.00 342: LSD 0.00 342: [ 0, 1] GM 167.918 NV 6859 GM -28.658 GN 4.22 [ 0.002 s ] 342: CMIN -0.13 CAVG 0.00 CMAX 0.22 342: LSD 1.00 342: [ 0, 2] GM 149.959 NV 6859 GM -26.618 GN 3.91 [ 0.002 s ] 342: CMIN -0.66 CAVG 0.02 CMAX 1.08 342: LSD 5.00 342: [ 0, 3] GM 86.734 NV 6751 GM -21.624 GN 3.16 [ 0.002 s ] 342: CMIN -2.76 CAVG 0.09 CMAX 4.52 342: LSD 21.00 342: [ 1, 4] GM 45.340 NV 6066 GM 12.985 GN 2.28 [ 0.002 s ] 342: CMIN -8.79 CAVG 0.42 CMAX 26.13 342: LSD 77.01 342: [ 2, 5] GM 7.1179175 NV 6185 GM -1.370 GN 0.385 [ 0.002 s ] 342: CMIN -7.46 CAVG 0.30 CMAX 17.43 342: LSD 31.38 342: [ 3, 6] GM 5.8718486 NV 6215 GM -1.061 GN 0.253 [ 0.002 s ] 342: CMIN -7.26 CAVG 0.31 CMAX 16.96 342: LSD 4.23 342: [ 4, 7] GM 4.1875200 NV 6252 GM -0.481 GN 0.302 [ 0.002 s ] 342: CMIN -7.17 CAVG 0.33 CMAX 15.50 342: LSD 8.87 342: [ 5, 8] GM 2.5404434 NV 6268 GM 0.199 GN 0.327 [ 0.002 s ] 342: CMIN -7.33 CAVG 0.37 CMAX 12.64 342: LSD 13.58 342: [ 6, 9] GM 1.5809063 NV 6272 GM 0.253 GN 0.261 [ 0.002 s ] 342: CMIN -7.57 CAVG 0.41 CMAX 16.21 342: LSD 17.78 342: [ 7, 10] GM 1.2611113 NV 6186 GM -0.858 GN 0.254 [ 0.002 s ] 342: CMIN -8.47 CAVG 0.41 CMAX 17.69 342: LSD 6.01 342: [ 8, 11] GM 0.8998204 NV 6202 GM -0.272 GN 0.0629 [ 0.002 s ] 342: CMIN -8.10 CAVG 0.41 CMAX 16.37 342: LSD 4.02 342: [ 9, 12] GM 0.8851209 NV 6200 GM -0.119 GN 0.0425 [ 0.002 s ] 342: CMIN -8.11 CAVG 0.41 CMAX 16.43 342: LSD 1.40 342: [10, 13] GM 0.8340189 NV 6185 GM -0.041 GN 0.0494 [ 0.002 s ] 342: CMIN -8.22 CAVG 0.42 CMAX 16.47 342: LSD 2.71 342: [11, 14] GM 0.7303342 NV 6158 GM 0.209 GN 0.0438 [ 0.002 s ] 342: CMIN -8.31 CAVG 0.43 CMAX 16.15 342: LSD 3.16 342: [12, 15] GM 0.6365445 NV 6149 GM -0.660 GN 0.078 [ 0.002 s ] 342: CMIN -8.30 CAVG 0.43 CMAX 15.18 342: LSD 6.07 342: [13, 16] GM 0.5679634 NV 6142 GM 0.051 GN 0.0445 [ 0.002 s ] 342: CMIN -8.24 CAVG 0.45 CMAX 14.83 342: LSD 4.36 342: [14, 17] GM 0.4986858 NV 6140 GM 0.219 GN 0.0371 [ 0.002 s ] 342: CMIN -8.07 CAVG 0.45 CMAX 14.65 342: LSD 3.34 342: [15, 18] GM 0.4631230 NV 6160 GM 0.148 GN 0.0299 [ 0.002 s ] 342: CMIN -7.80 CAVG 0.46 CMAX 14.76 342: LSD 4.03 342: [16, 19] GM 0.4685278 NV 6160 GM 0.115 GN 0.0395 [ 0.002 s ] 342: CMIN -7.51 CAVG 0.46 CMAX 15.22 342: LSD 3.59 342: [16, 20] GM 0.4544649 NV 6161 GM 0.152 GN 0.026 [ 0.002 s ] 342: CMIN -7.71 CAVG 0.46 CMAX 14.89 342: LSD 1.09 342: [2] xf_out->m_type = 9, xf_in->m_type = 0 342: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 342: bspline_xform_initialize 342: rdims = (5,5,5) 342: vox_per_rgn = (8,8,8) 342: cdims = (8 8 8) 342: ** Registration worker thread finished. 342: Writing transformation ... 342: Warping... 342: Running: plm_warp_native 342: Converting input image... 342: Converting xform... 342: bspline_xform_initialize 342: rdims = (5,5,5) 342: vox_per_rgn = (8,8,8) 342: cdims = (8 8 8) 342: Creating output vf... 342: Creating output volume... 342: Running native warper... 342: bspline_warp complete. 342: Back convert to original type... 342: > Convert vf to itk 342: > Conversion complete. 342: plm_warp_native is complete. 342: Saving image... 342: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha 342: Saving vf... 342: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-vf.mha 342: Load: 0.0370741 342: Run: 0.131573 342: Save: 0.031527 342: Total: 0.200174 342: Finished! 342: 342: STDERR: 342: Not an error 116/571 Test #342: plm-bsp-gm-k .......................... Passed 0.35 sec test 357 Start 357: plm-bsp-double 357: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 357: Test timeout computed to be: 1500 354: RETVAL: 0 354: STDOUT: Loading fixed image [0]: gauss-ushort-1.mha 354: Loading moving image [0]: gauss-ushort-2.mha 354: Launching registration worker thread 354: Inside registration worker thread 354: Doing registration stage 354: [1] xf_in->m_type = 0, xf_out->m_type = 0 354: RESAMPLE 1 1: (2 2 2), (2 2 2) 354: RESAMPLE 1 1: (2 2 2), (2 2 2) 354: volume_calc_grad complete. 354: bspline_xform_initialize 354: rdims = (2,2,2) 354: vox_per_rgn = (11,11,11) 354: cdims = (5 5 5) 354: Algorithm flavor = h 354: Threading = 0 354: >> Checking JH allocation 354: BSPLINE PARMS 354: max_its = 5 354: max_feval = 5 354: BSPLINE XFORM HEADER 354: vox_per_rgn = 11 11 11 354: roi_offset = 0 0 0 354: roi_dim = 19 19 19 354: img_dc = 1 0 0 0 1 0 0 0 1 354: BST METRICS 354: MET 110100 MSE 1.000000 354: Setting nmax, mmax = 375 21 354: >>> START 354: This problem is unconstrained. 354: [ 0, 0] MSE 18754.957 NV 6859 GM -2979.950 GN 852 [ 0.001 s ] 354: CMIN 0.00 CAVG 0.00 CMAX 0.00 354: LSD 0.00 354: [ 0, 1] MSE 17837.379 NV 6859 GM -2882.285 GN 824 [ 0.001 s ] 354: CMIN -0.07 CAVG 0.01 CMAX 0.68 354: LSD 1.00 354: [ 0, 2] MSE 14463.688 NV 6858 GM -2822.063 GN 824 [ 0.013 s ] 354: CMIN -0.35 CAVG 0.05 CMAX 3.40 354: LSD 5.00 354: [ 0, 3] MSE 3828.428 NV 6286 GM -1585.519 GN 459 [ 0.001 s ] 354: CMIN -1.48 CAVG 0.20 CMAX 14.26 354: LSD 21.00 354: [ 1, 4] MSE 3098.900 NV 5455 GM 1176.149 GN 399 [ 0.001 s ] 354: CMIN -1.74 CAVG 0.44 CMAX 32.50 354: LSD 27.95 354: [ 2, 5] MSE 281.899 NV 5851 GM 54.406 GN 43.4 [ 0.001 s ] 354: CMIN -1.73 CAVG 0.34 CMAX 23.98 354: LSD 13.11 354: [2] xf_out->m_type = 9, xf_in->m_type = 0 354: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 354: bspline_xform_initialize 354: rdims = (2,2,2) 354: vox_per_rgn = (22,22,22) 354: cdims = (5 5 5) 354: ** Registration worker thread finished. 354: Writing transformation ... 354: Warping... 354: Running: plm_warp_native 354: Converting input image... 354: Converting xform... 354: bspline_xform_initialize 354: rdims = (2,2,2) 354: vox_per_rgn = (22,22,22) 354: cdims = (5 5 5) 354: Creating output vf... 354: Creating output volume... 354: Running native warper... 354: bspline_warp complete. 354: Back convert to original type... 354: > Convert vf to itk 354: > Conversion complete. 354: plm_warp_native is complete. 354: Saving image... 354: Trying to write image to plm-bsp-ushort-img.mha 354: Saving vf... 354: Trying to write image to plm-bsp-ushort-vf.mha 354: Load: 0.0504861 354: Run: 0.062326 354: Save: 0.0434389 354: Total: 0.156251 354: Finished! 354: 354: STDERR: 354: Not an error 117/571 Test #354: plm-bsp-ushort ........................ Passed 0.29 sec test 361 Start 361: plm-bsp-char-output 361: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/Testing/Data/plm-bsp-char-output.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 361: Test timeout computed to be: 1500 357: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 357: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt 357: EXPECTED_ERRNO is 361: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 361: PARMS is /<>/Testing/Data/plm-bsp-char-output.txt 361: EXPECTED_ERRNO is 347: RETVAL: 0 347: STDOUT: Loading fixed image [0]: gauss-1.mha 347: Loading moving image [0]: gauss-2.mha 347: Launching registration worker thread 347: Inside registration worker thread 347: Doing registration stage 347: [1] xf_in->m_type = 0, xf_out->m_type = 0 347: RESAMPLE 1 1: (2 2 2), (2 2 2) 347: RESAMPLE 1 1: (2 2 2), (2 2 2) 347: volume_calc_grad complete. 347: bspline_xform_initialize 347: rdims = (2,2,2) 347: vox_per_rgn = (11,11,11) 347: cdims = (5 5 5) 347: Algorithm flavor = g 347: Threading = 0 347: >> Checking JH allocation 347: BSPLINE PARMS 347: max_its = 5 347: max_feval = 5 347: BSPLINE XFORM HEADER 347: vox_per_rgn = 11 11 11 347: roi_offset = 0 0 0 347: roi_dim = 19 19 19 347: img_dc = 1 0 0 0 1 0 0 0 1 347: BST METRICS 347: MET 110100 MSE 1.000000 347: Setting nmax, mmax = 375 21 347: >>> START 347: This problem is unconstrained. 347: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.031 s ] 347: CMIN 0.00 CAVG 0.00 CMAX 0.00 347: LSD 0.00 347: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.020 s ] 347: CMIN -0.07 CAVG 0.01 CMAX 0.68 347: LSD 1.00 347: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.064 s ] 347: CMIN -0.35 CAVG 0.05 CMAX 3.40 347: LSD 5.00 347: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.032 s ] 347: CMIN -1.48 CAVG 0.20 CMAX 14.26 347: LSD 21.00 347: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.016 s ] 347: CMIN -1.74 CAVG 0.44 CMAX 32.50 347: LSD 27.95 347: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.056 s ] 347: CMIN -1.73 CAVG 0.34 CMAX 23.99 347: LSD 13.11 347: [2] xf_out->m_type = 9, xf_in->m_type = 0 347: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 347: bspline_xform_initialize 347: rdims = (2,2,2) 347: vox_per_rgn = (22,22,22) 347: cdims = (5 5 5) 347: Writing transformation ... 347: Warping... 347: Running: plm_warp_native 347: Converting input image... 347: Converting xform... 347: bspline_xform_initialize 347: rdims = (2,2,2) 347: vox_per_rgn = (22,22,22) 347: cdims = (5 5 5) 347: ** Registration worker thread finished. 347: Creating output vf... 347: Creating output volume... 347: Running native warper... 347: bspline_warp complete. 347: Back convert to original type... 347: > Convert vf to itk 347: > Conversion complete. 347: plm_warp_native is complete. 347: Saving image... 347: Trying to write image to plm-bsp-openmp-img.mha 347: Saving vf... 347: Trying to write image to plm-bsp-openmp-vf.mha 347: Load: 0.0439548 347: Run: 0.235113 347: Save: 0.01667 347: Total: 0.295738 347: Finished! 347: 347: STDERR: 347: Not an error 118/571 Test #347: plm-bsp-openmp ........................ Passed 0.41 sec test 365 Start 365: plm-bsp-regularize-none 365: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 365: Test timeout computed to be: 1500 365: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 365: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt 365: EXPECTED_ERRNO is 357: RETVAL: 0 357: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha 357: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha 357: Launching registration worker thread 357: Inside registration worker thread 357: Doing registration stage 357: [1] xf_in->m_type = 0, xf_out->m_type = 0 357: RESAMPLE 1 1: (2 2 2), (2 2 2) 357: RESAMPLE 1 1: (2 2 2), (2 2 2) 357: volume_calc_grad complete. 357: bspline_xform_initialize 357: rdims = (2,2,2) 357: vox_per_rgn = (11,11,11) 357: cdims = (5 5 5) 357: Algorithm flavor = h 357: Threading = 0 357: >> Checking JH allocation 357: BSPLINE PARMS 357: max_its = 5 357: max_feval = 5 357: BSPLINE XFORM HEADER 357: vox_per_rgn = 11 11 11 357: roi_offset = 0 0 0 357: roi_dim = 19 19 19 357: img_dc = 1 0 0 0 1 0 0 0 1 357: BST METRICS 357: MET 110100 MSE 1.000000 357: Setting nmax, mmax = 375 21 357: >>> START 357: This problem is unconstrained. 357: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.001 s ] 357: CMIN 0.00 CAVG 0.00 CMAX 0.00 357: LSD 0.00 357: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.001 s ] 357: CMIN -0.07 CAVG 0.01 CMAX 0.68 357: LSD 1.00 357: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.001 s ] 357: CMIN -0.35 CAVG 0.05 CMAX 3.40 357: LSD 5.00 357: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.001 s ] 357: CMIN -1.48 CAVG 0.20 CMAX 14.26 357: LSD 21.00 357: [ 1, 4] MSE 3098.536 NV 5455 GM 1176.092 GN 399 [ 0.001 s ] 357: CMIN -1.74 CAVG 0.44 CMAX 32.50 357: LSD 27.95 357: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.001 s ] 357: CMIN -1.73 CAVG 0.34 CMAX 23.99 357: LSD 13.11 357: [2] xf_out->m_type = 9, xf_in->m_type = 0 357: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 357: bspline_xform_initialize 357: rdims = (2,2,2) 357: vox_per_rgn = (22,22,22) 357: cdims = (5 5 5) 357: ** Registration worker thread finished. 357: Writing transformation ... 357: Warping... 357: Running: plm_warp_native 357: Converting input image... 357: Converting xform... 357: bspline_xform_initialize 357: rdims = (2,2,2) 357: vox_per_rgn = (22,22,22) 357: cdims = (5 5 5) 357: Creating output vf... 357: Creating output volume... 357: Running native warper... 357: bspline_warp complete. 357: Back convert to original type... 357: > Convert vf to itk 357: > Conversion complete. 357: plm_warp_native is complete. 357: Saving image... 357: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha 357: Saving vf... 357: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double-vf.mha 357: Load: 0.026216 357: Run: 0.033432 357: Save: 0.0455761 357: Total: 0.105224 357: Finished! 357: 357: STDERR: 357: Not an error 119/571 Test #357: plm-bsp-double ........................ Passed 0.23 sec test 368 Start 368: plm-bsp-regularize-analytic 368: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 368: Test timeout computed to be: 1500 368: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 368: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt 368: EXPECTED_ERRNO is 361: RETVAL: 0 361: STDOUT: Loading fixed image [0]: rect-2.mha 361: Loading moving image [0]: rect-3.mha 361: Launching registration worker thread 361: Inside registration worker thread 361: Doing registration stage 361: [1] xf_in->m_type = 0, xf_out->m_type = 0 361: RESAMPLE 1 1: (2 2 2), (2 2 2) 361: RESAMPLE 1 1: (2 2 2), (2 2 2) 361: volume_calc_grad complete. 361: bspline_xform_initialize 361: Warning: vox_per_rgn was less than 4. 361: Warning: vox_per_rgn was less than 4. 361: Warning: vox_per_rgn was less than 4. 361: rdims = (5,5,5) 361: vox_per_rgn = (4,4,4) 361: cdims = (8 8 8) 361: Algorithm flavor = h 361: Threading = 0 361: >> Checking JH allocation 361: BSPLINE PARMS 361: max_its = 5 361: max_feval = 5 361: BSPLINE XFORM HEADER 361: vox_per_rgn = 4 4 4 361: roi_offset = 0 0 0 361: roi_dim = 19 19 19 361: img_dc = 1 0 0 0 1 0 0 0 1 361: BST METRICS 361: MET 110100 MSE 1.000000 361: Setting nmax, mmax = 1536 41 361: >>> START 361: This problem is unconstrained. 361: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.002 s ] 361: CMIN 0.00 CAVG 0.00 CMAX 0.00 361: LSD 0.00 361: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.001 s ] 361: CMIN -0.60 CAVG -0.00 CMAX 0.08 361: LSD 1.00 361: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.001 s ] 361: CMIN -2.99 CAVG -0.01 CMAX 0.42 361: LSD 5.00 361: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.001 s ] 361: CMIN -12.56 CAVG -0.05 CMAX 1.74 361: LSD 21.00 361: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.001 s ] 361: CMIN -54.37 CAVG -0.20 CMAX 6.52 361: LSD 67.10 361: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.022 s ] 361: CMIN -51.91 CAVG -0.18 CMAX 5.91 361: LSD 13.48 361: [2] xf_out->m_type = 9, xf_in->m_type = 0 361: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 361: bspline_xform_initialize 361: rdims = (5,5,5) 361: vox_per_rgn = (8,8,8) 361: cdims = (8 8 8) 361: ** Registration worker thread finished. 361: Warping... 361: Running: plm_warp_native 361: Converting input image... 361: Converting xform... 361: bspline_xform_initialize 361: rdims = (5,5,5) 361: vox_per_rgn = (8,8,8) 361: cdims = (8 8 8) 361: Creating output volume... 361: Running native warper... 361: bspline_warp complete. 361: Back convert to original type... 361: plm_warp_native is complete. 361: Saving image... 361: Trying to write image to plm-bsp-char-output.mha 361: Load: 0.0810671 361: Run: 0.0505059 361: Save: 0.059392 361: Total: 0.190965 361: Finished! 361: 361: STDERR: 361: Not an error 120/571 Test #361: plm-bsp-char-output ................... Passed 0.32 sec test 371 Start 371: plm-bsp-regularize-numeric 371: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 371: Test timeout computed to be: 1500 371: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 371: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt 371: EXPECTED_ERRNO is 365: RETVAL: 0 365: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 365: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 365: Launching registration worker thread 365: Inside registration worker thread 365: Doing registration stage 365: [1] xf_in->m_type = 0, xf_out->m_type = 0 365: RESAMPLE 1 1: (1 1 1), (1 1 1) 365: RESAMPLE 1 1: (1 1 1), (1 1 1) 365: volume_calc_grad complete. 365: bspline_xform_initialize 365: Warning: vox_per_rgn was less than 4. 365: Warning: vox_per_rgn was less than 4. 365: Warning: vox_per_rgn was less than 4. 365: rdims = (10,10,10) 365: vox_per_rgn = (4,4,4) 365: cdims = (13 13 13) 365: Algorithm flavor = g 365: Threading = 0 365: >> Checking JH allocation 365: BSPLINE PARMS 365: max_its = 5 365: max_feval = 5 365: BSPLINE XFORM HEADER 365: vox_per_rgn = 4 4 4 365: roi_offset = 0 0 0 365: roi_dim = 38 38 38 365: img_dc = 1 0 0 0 1 0 0 0 1 365: BST METRICS 365: MET 110100 MSE 1.000000 365: Setting nmax, mmax = 6591 83 365: >>> START 365: This problem is unconstrained. 365: [ 0, 0] MSE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.045 s ] 365: CMIN 0.00 CAVG 0.00 CMAX 0.00 365: LSD 0.00 365: [ 0, 1] MSE 5484.124 NV 54872 GM 0.045 GN 27.8 [ 0.019 s ] 365: CMIN -0.16 CAVG -0.00 CMAX 0.22 365: LSD 1.00 365: [ 0, 2] MSE 5266.236 NV 54872 GM 0.224 GN 26.4 [ 0.037 s ] 365: CMIN -0.81 CAVG 0.00 CMAX 1.12 365: LSD 5.00 365: [ 0, 3] MSE 4484.536 NV 54872 GM 0.928 GN 20.9 [ 0.026 s ] 365: CMIN -3.39 CAVG 0.00 CMAX 4.70 365: LSD 21.00 365: [ 1, 4] MSE 2493.238 NV 54872 GM 0.677 GN 15.1 [ 0.022 s ] 365: CMIN -13.49 CAVG -0.00 CMAX 18.05 365: LSD 60.54 365: [ 2, 5] MSE 4765.919 NV 54872 GM 81.679 GN 34.3 [ 0.052 s ] 365: CMIN -43.65 CAVG -0.01 CMAX 57.84 365: LSD 218.24 365: [2] xf_out->m_type = 9, xf_in->m_type = 0 365: Writing transformation ... 365: Warping... 365: Running: plm_warp_native 365: Converting input image... 365: Converting xform... 365: bspline_xform_initialize 365: rdims = (10,10,10) 365: vox_per_rgn = (4,4,4) 365: cdims = (13 13 13) 365: ** Registration worker thread finished. 365: Creating output vf... 365: Creating output volume... 365: Running native warper... 365: bspline_warp complete. 365: Back convert to original type... 365: > Convert vf to itk 365: > Conversion complete. 365: plm_warp_native is complete. 365: Saving image... 365: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-img.mha 365: Saving vf... 365: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha 365: Load: 0.0396819 365: Run: 0.216097 365: Save: 0.0208111 365: Total: 0.27659 365: Finished! 365: 365: STDERR: 365: Not an error 121/571 Test #365: plm-bsp-regularize-none ............... Passed 0.39 sec test 375 Start 375: plm-bsp-landmark-b 375: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 375: Test timeout computed to be: 1500 375: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 375: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt 375: EXPECTED_ERRNO is 375: RETVAL: 0 375: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-15.mha 375: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-16.mha 375: Loading fixed landmarks: /<>/Testing/Data/fiducials-rect-3.fcsv 375: Loading moving landmarks: /<>/Testing/Data/fiducials-rect-2.fcsv 375: Launching registration worker thread 375: Inside registration worker thread 375: Doing registration stage 375: [1] xf_in->m_type = 0, xf_out->m_type = 0 375: RESAMPLE 1 1: (2 2 2), (2 2 2) 375: RESAMPLE 1 1: (2 2 2), (2 2 2) 375: volume_calc_grad complete. 375: bspline_xform_initialize 375: Warning: vox_per_rgn was less than 4. 375: Warning: vox_per_rgn was less than 4. 375: Warning: vox_per_rgn was less than 4. 375: rdims = (5,5,5) 375: vox_per_rgn = (4,4,4) 375: cdims = (8 8 8) 375: Algorithm flavor = h 375: Threading = 0 375: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 375: >> Checking JH allocation 375: Computing landmark grid coordinates 375: image dc=-1 0 0 0 -1 0 0 0 1 375: image or=250 250 -236.842 375: image dm=19 19 19 375: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) 375: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) 375: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) 375: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) 375: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) 375: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) 375: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) 375: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) 375: BSPLINE PARMS 375: max_its = 5 375: max_feval = 5 375: BSPLINE XFORM HEADER 375: vox_per_rgn = 4 4 4 375: roi_offset = 0 0 0 375: roi_dim = 19 19 19 375: img_dc = -1 0 0 0 -1 0 0 0 1 375: BST METRICS 375: MET 110100 MSE 1.000000 375: Setting nmax, mmax = 1536 41 375: >>> START 375: This problem is unconstrained. 375: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.002 s ] 375: MSE 1339.480 LM 446.242 375: CMIN 0.00 CAVG 0.00 CMAX 0.00 375: LSD 0.00 375: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.001 s ] 375: MSE 1303.402 LM 437.384 375: CMIN -0.03 CAVG 0.00 CMAX 0.57 375: LSD 1.00 375: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.001 s ] 375: MSE 1164.662 LM 402.938 375: CMIN -0.17 CAVG 0.01 CMAX 2.86 375: LSD 5.00 375: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.001 s ] 375: MSE 698.326 LM 280.914 375: CMIN -0.71 CAVG 0.05 CMAX 12.03 375: LSD 21.00 375: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.025 s ] 375: MSE 81.402 LM 37.433 375: CMIN -1.76 CAVG 0.19 CMAX 39.56 375: LSD 55.80 375: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.001 s ] 375: MSE 47.343 LM 22.393 375: CMIN -3.07 CAVG 0.19 CMAX 44.32 375: LSD 10.82 375: [2] xf_out->m_type = 9, xf_in->m_type = 0 375: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 375: bspline_xform_initialize 375: rdims = (5,5,5) 375: vox_per_rgn = (8,8,8) 375: cdims = (8 8 8) 375: ** Registration worker thread finished. 375: Writing transformation ... 375: Warping... 375: Running: plm_warp_native 375: Converting input image... 375: Converting xform... 375: bspline_xform_initialize 375: rdims = (5,5,5) 375: vox_per_rgn = (8,8,8) 375: cdims = (8 8 8) 375: Creating output vf... 375: Creating output volume... 375: Running native warper... 375: bspline_warp complete. 375: Back convert to original type... 375: > Convert vf to itk 375: > Conversion complete. 375: plm_warp_native is complete. 375: Saving image... 375: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha 375: Saving warped landmarks... 375: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-warped.fcsv 375: Saving vf... 375: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-vf.mha 375: Load: 0.047997 375: Run: 0.073283 375: Save: 0.0578699 375: Total: 0.17915 375: Finished! 375: 375: STDERR: 375: Not an error 122/571 Test #375: plm-bsp-landmark-b .................... Passed 0.30 sec test 378 Start 378: plm-bsp-landmark-c 378: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 378: Test timeout computed to be: 1500 378: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 378: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt 378: EXPECTED_ERRNO is 294: RETVAL: 0 294: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 294: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 294: Launching registration worker thread 294: Inside registration worker thread 294: Doing registration stage 294: [1] xf_in->m_type = 0, xf_out->m_type = 0 294: Fixed image for this stage: 294: Dim = 38 38 38 294: Origin = -25 -25 -25 294: Spacing = 1.31579 1.31579 1.31579 294: Direction Cosines = 294: 1 0 0 294: 0 1 0 294: 0 0 1 294: Moving image for this stage: 294: Dim = 38 38 38 294: Origin = -25 -25 -25 294: Spacing = 1.31579 1.31579 1.31579 294: Direction Cosines = 294: 1 0 0 294: 0 1 0 294: 0 0 1 294: Starting ITK registration 294: StartEvent: 294: MSE [ 0, 0] 18945.891 [ 0.272 secs] 294: MSE [ 0, 1] 18140.496 [ 0.222 secs] 294: MSE [ 0, 2] 14979.440 [ 0.227 secs] 294: MSE [ 0, 3] 5390.861 [ 0.196 secs] 294: MSE [ 0, 4,319.84] 5390.861 * 294: MSE [ 1, 5] 4259.522 [ 0.182 secs] 294: MSE [ 1, 6,313.58] 4259.522 -1131.34 * 294: MSE [ 2, 7] 465.644 [ 0.194 secs] 294: MSE [ 2, 8,36.78] 465.644 -3793.88 * 294: MSE [ 3, 9] 382.530 [ 0.195 secs] 294: MSE [ 3, 10,21.77] 382.530 -83.11 * 294: MSE [ 4, 11] 289.494 [ 0.262 secs] 294: MSE [ 4, 12,13.35] 289.494 -93.04 * 294: MSE [ 5, 13] 226.103 [ 0.251 secs] 294: MSE [ 5, 14,21.50] 226.103 -63.39 * 294: EndEvent: 294: Too many iterations. Iterations = 6 294: LBFGSBOptimizer: 294: ITK registration complete 294: [2] xf_out->m_type = 6, xf_in->m_type = 0 294: ** Registration worker thread finished. 294: Writing transformation ... 294: Warping... 294: plm_warp_itk: xform_to_itk_vf 294: plm_warp_itk: convert_to_itk 294: plm_warp_itk: warping... 294: Saving image... 294: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha 294: Saving vf... 294: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-vf.mha 294: Load: 0.0242369 294: Run: 2.10338 294: Save: 0.134742 294: Total: 2.26236 294: Finished! 294: 294: STDERR: 294: Not an error 123/571 Test #294: plm-reg-itk-bspline ................... Passed 2.35 sec test 381 Start 381: plm-bsp-landmark-d 381: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 381: Test timeout computed to be: 1500 381: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 381: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt 381: EXPECTED_ERRNO is 378: RETVAL: 0 378: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-15.mha 378: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-16.mha 378: Launching registration worker thread 378: Inside registration worker thread 378: Loading fixed landmarks: /<>/Testing/Data/fiducials-rect-3.fcsv 378: Loading moving landmarks: /<>/Testing/Data/fiducials-rect-2.fcsv 378: Doing registration stage 378: [1] xf_in->m_type = 0, xf_out->m_type = 0 378: RESAMPLE 1 1: (2 2 2), (2 2 2) 378: RESAMPLE 1 1: (2 2 2), (2 2 2) 378: volume_calc_grad complete. 378: bspline_xform_initialize 378: Warning: vox_per_rgn was less than 4. 378: Warning: vox_per_rgn was less than 4. 378: Warning: vox_per_rgn was less than 4. 378: rdims = (5,5,5) 378: vox_per_rgn = (4,4,4) 378: cdims = (8 8 8) 378: Algorithm flavor = h 378: Threading = 0 378: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 378: >> Checking JH allocation 378: Computing landmark grid coordinates 378: image dc=-1 0 0 0 -1 0 0 0 1 378: image or=250 250 -236.842 378: image dm=19 19 19 378: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) 378: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) 378: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) 378: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) 378: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) 378: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) 378: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) 378: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) 378: BSPLINE PARMS 378: max_its = 5 378: max_feval = 5 378: BSPLINE XFORM HEADER 378: vox_per_rgn = 4 4 4 378: roi_offset = 0 0 0 378: roi_dim = 19 19 19 378: img_dc = -1 0 0 0 -1 0 0 0 1 378: BST METRICS 378: MET 110100 MSE 1.000000 378: Setting nmax, mmax = 1536 41 378: >>> START 378: This problem is unconstrained. 378: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.002 s ] 378: MSE 1339.480 LM 446.242 378: CMIN 0.00 CAVG 0.00 CMAX 0.00 378: LSD 0.00 378: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.001 s ] 378: MSE 1303.402 LM 437.384 378: CMIN -0.03 CAVG 0.00 CMAX 0.57 378: LSD 1.00 378: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.001 s ] 378: MSE 1164.662 LM 402.938 378: CMIN -0.17 CAVG 0.01 CMAX 2.86 378: LSD 5.00 378: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.001 s ] 378: MSE 698.326 LM 280.914 378: CMIN -0.71 CAVG 0.05 CMAX 12.03 378: LSD 21.00 378: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.001 s ] 378: MSE 81.402 LM 37.433 378: CMIN -1.76 CAVG 0.19 CMAX 39.56 378: LSD 55.80 378: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.001 s ] 378: MSE 47.343 LM 22.393 378: CMIN -3.07 CAVG 0.19 CMAX 44.32 378: LSD 10.82 378: [2] xf_out->m_type = 9, xf_in->m_type = 0 378: Warping... 378: Running: plm_warp_native 378: Converting input image... 378: Converting xform... 378: bspline_xform_initialize 378: rdims = (5,5,5) 378: vox_per_rgn = (8,8,8) 378: cdims = (8 8 8) 378: Creating output vf... 378: Creating output volume... 378: Running native warper... 378: bspline_warp complete. 378: > Convert vf to itk 378: > Conversion complete. 378: plm_warp_native is complete. 378: Saving warped landmarks... 378: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-warped.fcsv 378: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 378: bspline_xform_initialize 378: rdims = (5,5,5) 378: vox_per_rgn = (8,8,8) 378: cdims = (8 8 8) 378: ** Registration worker thread finished. 378: Writing transformation ... 378: Warping... 378: Running: plm_warp_native 378: Converting input image... 378: Converting xform... 378: bspline_xform_initialize 378: rdims = (5,5,5) 378: vox_per_rgn = (8,8,8) 378: cdims = (8 8 8) 378: Creating output vf... 378: Creating output volume... 378: Running native warper... 378: bspline_warp complete. 378: Back convert to original type... 378: > Convert vf to itk 378: > Conversion complete. 378: plm_warp_native is complete. 378: Saving image... 378: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha 378: Saving vf... 378: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-vf.mha 378: Load: 0.068171 378: Run: 0.092495 378: Save: 0.0932839 378: Total: 0.25395 378: Finished! 378: 378: STDERR: 378: Not an error 124/571 Test #378: plm-bsp-landmark-c .................... Passed 0.42 sec test 384 Start 384: plm-bsp-landmark-e 384: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 384: Test timeout computed to be: 1500 384: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 384: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt 384: EXPECTED_ERRNO is 368: RETVAL: 0 368: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 368: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 368: Launching registration worker thread 368: Inside registration worker thread 368: Doing registration stage 368: [1] xf_in->m_type = 0, xf_out->m_type = 0 368: RESAMPLE 1 1: (1 1 1), (1 1 1) 368: RESAMPLE 1 1: (1 1 1), (1 1 1) 368: volume_calc_grad complete. 368: bspline_xform_initialize 368: Warning: vox_per_rgn was less than 4. 368: Warning: vox_per_rgn was less than 4. 368: Warning: vox_per_rgn was less than 4. 368: rdims = (10,10,10) 368: vox_per_rgn = (4,4,4) 368: cdims = (13 13 13) 368: Algorithm flavor = g 368: Threading = 0 368: Regularization: flavor = c lambda = 1.000000 368: Regularizer initialized 368: >> Checking JH allocation 368: BSPLINE PARMS 368: max_its = 5 368: max_feval = 5 368: BSPLINE XFORM HEADER 368: vox_per_rgn = 4 4 4 368: roi_offset = 0 0 0 368: roi_dim = 38 38 38 368: img_dc = 1 0 0 0 1 0 0 0 1 368: BST METRICS 368: MET 110100 MSE 1.000000 368: Setting nmax, mmax = 6591 83 368: >>> START 368: This problem is unconstrained. 368: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.187 s ] 368: MSE 5540.166 RM 0.000 [ 0.046 | 0.141 ] 368: CMIN 0.00 CAVG 0.00 CMAX 0.00 368: LSD 0.00 368: [ 0, 1] SCORE 5484.176 NV 54872 GM 0.045 GN 27.7 [ 0.124 s ] 368: MSE 5484.124 RM 0.052 [ 0.004 | 0.120 ] 368: CMIN -0.16 CAVG -0.00 CMAX 0.22 368: LSD 1.00 368: [ 0, 2] SCORE 5267.543 NV 54872 GM 0.224 GN 25.9 [ 0.152 s ] 368: MSE 5266.236 RM 1.307 [ 0.035 | 0.117 ] 368: CMIN -0.81 CAVG 0.00 CMAX 1.12 368: LSD 5.00 368: [ 0, 3] SCORE 4507.597 NV 54872 GM 0.928 GN 18.7 [ 0.136 s ] 368: MSE 4484.536 RM 23.060 [ 0.024 | 0.112 ] 368: CMIN -3.39 CAVG 0.00 CMAX 4.70 368: LSD 21.00 368: [ 1, 4] SCORE 3149.129 NV 54872 GM 4.968 GN 2.36 [ 0.120 s ] 368: MSE 2955.678 RM 193.451 [ 0.022 | 0.098 ] 368: CMIN -10.06 CAVG -0.00 CMAX 13.65 368: LSD 42.53 368: [ 2, 5] SCORE 3079.150 NV 54872 GM -1.061 GN 2.72 [ 0.151 s ] 368: MSE 2880.344 RM 198.806 [ 0.047 | 0.104 ] 368: CMIN -10.75 CAVG -0.00 CMAX 13.43 368: LSD 6.23 368: [2] xf_out->m_type = 9, xf_in->m_type = 0 368: Writing transformation ... 368: Warping... 368: Running: plm_warp_native 368: Converting input image... 368: Converting xform... 368: bspline_xform_initialize 368: rdims = (10,10,10) 368: vox_per_rgn = (4,4,4) 368: cdims = (13 13 13) 368: Creating output vf... 368: Creating output volume... 368: Running native warper... 368: ** Registration worker thread finished. 368: bspline_warp complete. 368: Back convert to original type... 368: > Convert vf to itk 368: > Conversion complete. 368: plm_warp_native is complete. 368: Saving image... 368: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-img.mha 368: Saving vf... 368: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha 368: Load: 0.0341752 368: Run: 0.891107 368: Save: 0.022084 368: Total: 0.947366 368: Finished! 368: 368: STDERR: 368: Not an error 125/571 Test #368: plm-bsp-regularize-analytic ........... Passed 1.08 sec test 387 Start 387: plm-bsp-dcos-a 387: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 387: Test timeout computed to be: 1500 387: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 387: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt 387: EXPECTED_ERRNO is 381: RETVAL: 0 381: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-15.mha 381: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-16.mha 381: Launching registration worker thread 381: Inside registration worker thread 381: Doing registration stage 381: [1] xf_in->m_type = 0, xf_out->m_type = 0 381: RESAMPLE 1 1: (2 2 2), (2 2 2) 381: RESAMPLE 1 1: (2 2 2), (2 2 2) 381: volume_calc_grad complete. 381: bspline_xform_initialize 381: Warning: vox_per_rgn was less than 4. 381: Warning: vox_per_rgn was less than 4. 381: Warning: vox_per_rgn was less than 4. 381: rdims = (5,5,5) 381: vox_per_rgn = (4,4,4) 381: cdims = (8 8 8) 381: Algorithm flavor = h 381: Threading = 0 381: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 381: >> Checking JH allocation 381: Computing landmark grid coordinates 381: image dc=-1 0 0 0 -1 0 0 0 1 381: image or=250 250 -236.842 381: image dm=19 19 19 381: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) 381: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) 381: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) 381: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) 381: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) 381: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) 381: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) 381: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) 381: BSPLINE PARMS 381: max_its = 5 381: max_feval = 5 381: BSPLINE XFORM HEADER 381: vox_per_rgn = 4 4 4 381: roi_offset = 0 0 0 381: roi_dim = 19 19 19 381: img_dc = -1 0 0 0 -1 0 0 0 1 381: BST METRICS 381: MET 110100 MSE 1.000000 381: Setting nmax, mmax = 1536 41 381: >>> START 381: This problem is unconstrained. 381: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.002 s ] 381: MSE 1339.480 LM 446.242 381: CMIN 0.00 CAVG 0.00 CMAX 0.00 381: LSD 0.00 381: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.002 s ] 381: MSE 1303.402 LM 437.384 381: CMIN -0.03 CAVG 0.00 CMAX 0.57 381: LSD 1.00 381: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.001 s ] 381: MSE 1164.662 LM 402.938 381: CMIN -0.17 CAVG 0.01 CMAX 2.86 381: LSD 5.00 381: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.001 s ] 381: MSE 698.326 LM 280.914 381: CMIN -0.71 CAVG 0.05 CMAX 12.03 381: LSD 21.00 381: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.001 s ] 381: MSE 81.402 LM 37.433 381: CMIN -1.76 CAVG 0.19 CMAX 39.56 381: LSD 55.80 381: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.001 s ] 381: MSE 47.343 LM 22.393 381: CMIN -3.07 CAVG 0.19 CMAX 44.32 381: LSD 10.82 381: [2] xf_out->m_type = 9, xf_in->m_type = 0 381: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 381: bspline_xform_initialize 381: rdims = (5,5,5) 381: vox_per_rgn = (8,8,8) 381: cdims = (8 8 8) 381: ** Registration worker thread finished. 381: Writing transformation ... 381: Warping... 381: Running: plm_warp_native 381: Converting input image... 381: Converting xform... 381: bspline_xform_initialize 381: rdims = (5,5,5) 381: vox_per_rgn = (8,8,8) 381: cdims = (8 8 8) 381: Creating output vf... 381: Creating output volume... 381: Running native warper... 381: bspline_warp complete. 381: Back convert to original type... 381: > Convert vf to itk 381: > Conversion complete. 381: plm_warp_native is complete. 381: Saving image... 381: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha 381: Saving vf... 381: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-vf.mha 381: Load: 0.0431139 381: Run: 0.0196691 381: Save: 0.0334761 381: Total: 0.0962591 381: Finished! 381: 381: STDERR: 381: Not an error 126/571 Test #381: plm-bsp-landmark-d .................... Passed 0.18 sec test 390 Start 390: plm-bsp-dcos-b 390: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 390: Test timeout computed to be: 1500 390: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 390: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt 390: EXPECTED_ERRNO is 384: RETVAL: 0 384: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-15.mha 384: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-16.mha 384: Loading fixed landmarks: /<>/Testing/Data/fiducials-rect-3.txt 384: Error parsing fcsv file: /<>/Testing/Data/fiducials-rect-3.txt 384: Loading moving landmarks: /<>/Testing/Data/fiducials-rect-2.txt 384: Error parsing fcsv file: /<>/Testing/Data/fiducials-rect-2.txt 384: Launching registration worker thread 384: Inside registration worker thread 384: Doing registration stage 384: [1] xf_in->m_type = 0, xf_out->m_type = 0 384: RESAMPLE 1 1: (2 2 2), (2 2 2) 384: RESAMPLE 1 1: (2 2 2), (2 2 2) 384: volume_calc_grad complete. 384: bspline_xform_initialize 384: Warning: vox_per_rgn was less than 4. 384: Warning: vox_per_rgn was less than 4. 384: Warning: vox_per_rgn was less than 4. 384: rdims = (5,5,5) 384: vox_per_rgn = (4,4,4) 384: cdims = (8 8 8) 384: Algorithm flavor = h 384: Threading = 0 384: Landmarks: 0 fixed, 0 moving, lambda = 1.000000 384: >> Checking JH allocation 384: BSPLINE PARMS 384: max_its = 5 384: max_feval = 5 384: BSPLINE XFORM HEADER 384: vox_per_rgn = 4 4 4 384: roi_offset = 0 0 0 384: roi_dim = 19 19 19 384: img_dc = -1 0 0 0 -1 0 0 0 1 384: BST METRICS 384: MET 110100 MSE 1.000000 384: Setting nmax, mmax = 1536 41 384: >>> START 384: This problem is unconstrained. 384: [ 0, 0] MSE 1339.480 NV 6859 GM -84.834 GN 23.2 [ 0.002 s ] 384: CMIN 0.00 CAVG 0.00 CMAX 0.00 384: LSD 0.00 384: [ 0, 1] MSE 1303.294 NV 6859 GM -83.620 GN 22.8 [ 0.001 s ] 384: CMIN -0.04 CAVG 0.00 CMAX 0.59 384: LSD 1.00 384: [ 0, 2] MSE 1164.232 NV 6859 GM -78.768 GN 21.5 [ 0.001 s ] 384: CMIN -0.19 CAVG 0.01 CMAX 2.96 384: LSD 5.00 384: [ 0, 3] MSE 698.336 NV 6859 GM -59.420 GN 16.2 [ 0.001 s ] 384: CMIN -0.80 CAVG 0.05 CMAX 12.42 384: LSD 21.00 384: [ 1, 4] MSE 89.012 NV 6859 GM 0.171 GN 3.29 [ 0.001 s ] 384: CMIN -2.05 CAVG 0.17 CMAX 39.56 384: LSD 52.33 384: [ 2, 5] MSE 51.991 NV 6859 GM 2.502 GN 2.38 [ 0.001 s ] 384: CMIN -3.69 CAVG 0.18 CMAX 41.73 384: LSD 11.03 384: [2] xf_out->m_type = 9, xf_in->m_type = 0 384: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 384: bspline_xform_initialize 384: rdims = (5,5,5) 384: vox_per_rgn = (8,8,8) 384: cdims = (8 8 8) 384: ** Registration worker thread finished. 384: Writing transformation ... 384: Warping... 384: Running: plm_warp_native 384: Converting input image... 384: Converting xform... 384: bspline_xform_initialize 384: rdims = (5,5,5) 384: vox_per_rgn = (8,8,8) 384: cdims = (8 8 8) 384: Creating output vf... 384: Creating output volume... 384: Running native warper... 384: bspline_warp complete. 384: Back convert to original type... 384: > Convert vf to itk 384: > Conversion complete. 384: plm_warp_native is complete. 384: Saving image... 384: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha 384: Saving warped landmarks... 384: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-warped.fcsv 384: Saving vf... 384: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-vf.mha 384: Load: 0.046057 384: Run: 0.023715 384: Save: 0.0269279 384: Total: 0.0967 384: Finished! 384: 384: STDERR: 384: Not an error 127/571 Test #384: plm-bsp-landmark-e .................... Passed 0.19 sec test 393 Start 393: plm-bsp-dcos-c 393: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 393: Test timeout computed to be: 1500 393: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 393: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt 393: EXPECTED_ERRNO is 393: RETVAL: 0 393: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 393: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-5.mha 393: Launching registration worker thread 393: Inside registration worker thread 393: Doing registration stage 393: [1] xf_in->m_type = 0, xf_out->m_type = 0 393: RESAMPLE 1 1: (2 2 2), (2 2 2) 393: RESAMPLE 1 1: (2 2 2), (2 2 2) 393: volume_calc_grad complete. 393: bspline_xform_initialize 393: Warning: vox_per_rgn was less than 4. 393: Warning: vox_per_rgn was less than 4. 393: Warning: vox_per_rgn was less than 4. 393: rdims = (5,5,5) 393: vox_per_rgn = (4,4,4) 393: cdims = (8 8 8) 393: Algorithm flavor = c 393: Threading = 0 393: >> Checking JH allocation 393: BSPLINE PARMS 393: max_its = 5 393: max_feval = 5 393: BSPLINE XFORM HEADER 393: vox_per_rgn = 4 4 4 393: roi_offset = 0 0 0 393: roi_dim = 19 19 19 393: img_dc = 1 0 0 0 1 0 0 0 1 393: BST METRICS 393: MET 110100 MSE 1.000000 393: Setting nmax, mmax = 1536 41 393: >>> START 393: This problem is unconstrained. 393: [ 0, 0] MSE 1969.041 NV 5719 GM 151.518 GN 29 [ 0.002 s ] 393: CMIN 0.00 CAVG 0.00 CMAX 0.00 393: LSD 0.00 393: [ 0, 1] MSE 1948.894 NV 5719 GM 150.797 GN 28.8 [ 0.002 s ] 393: CMIN -0.42 CAVG -0.00 CMAX 0.04 393: LSD 1.00 393: [ 0, 2] MSE 1873.203 NV 5719 GM 152.313 GN 29.2 [ 0.002 s ] 393: CMIN -2.08 CAVG -0.02 CMAX 0.22 393: LSD 5.00 393: [ 0, 3] MSE 1636.132 NV 5719 GM 148.988 GN 28.8 [ 0.021 s ] 393: CMIN -8.76 CAVG -0.07 CMAX 0.93 393: LSD 21.00 393: [ 0, 4] MSE 1351.435 NV 5719 GM 79.113 GN 23.8 [ 0.002 s ] 393: CMIN -35.44 CAVG -0.29 CMAX 3.78 393: LSD 85.00 393: [ 1, 5] MSE 6291.440 NV 5719 GM -73.340 GN 33.2 [ 0.002 s ] 393: CMIN -126.28 CAVG -0.93 CMAX 14.98 393: LSD 199.65 393: [2] xf_out->m_type = 9, xf_in->m_type = 0 393: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 393: bspline_xform_initialize 393: rdims = (5,5,5) 393: vox_per_rgn = (8,8,8) 393: cdims = (8 8 8) 393: ** Registration worker thread finished. 393: Writing transformation ... 393: Warping... 393: Running: plm_warp_native 393: Converting input image... 393: Converting xform... 393: bspline_xform_initialize 393: rdims = (5,5,5) 393: vox_per_rgn = (8,8,8) 393: cdims = (8 8 8) 393: Creating output vf... 393: Creating output volume... 393: Running native warper... 393: bspline_warp complete. 393: Back convert to original type... 393: > Convert vf to itk 393: > Conversion complete. 393: plm_warp_native is complete. 393: Saving image... 393: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd 393: Saving vf... 393: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-vf.nrrd 393: Load: 0.0336728 393: Run: 0.0635021 393: Save: 0.124813 393: Total: 0.221988 393: Finished! 393: 393: STDERR: 393: Not an error 128/571 Test #393: plm-bsp-dcos-c ........................ Passed 0.28 sec test 396 Start 396: plm-bsp-dcos-d 396: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 396: Test timeout computed to be: 1500 387: RETVAL: 0 387: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 387: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-5.mha 387: Launching registration worker thread 387: Inside registration worker thread 387: Doing registration stage 387: [1] xf_in->m_type = 0, xf_out->m_type = 0 387: RESAMPLE 1 1: (2 2 2), (2 2 2) 387: RESAMPLE 1 1: (2 2 2), (2 2 2) 387: volume_calc_grad complete. 387: bspline_xform_initialize 387: Warning: vox_per_rgn was less than 4. 387: Warning: vox_per_rgn was less than 4. 387: Warning: vox_per_rgn was less than 4. 387: rdims = (5,5,5) 387: vox_per_rgn = (4,4,4) 387: cdims = (8 8 8) 387: Algorithm flavor = g 387: Threading = 0 387: >> Checking JH allocation 387: BSPLINE PARMS 387: max_its = 5 387: max_feval = 5 387: BSPLINE XFORM HEADER 387: vox_per_rgn = 4 4 4 387: roi_offset = 0 0 0 387: roi_dim = 19 19 19 387: img_dc = 1 0 0 0 1 0 0 0 1 387: BST METRICS 387: MET 110100 MSE 1.000000 387: Setting nmax, mmax = 1536 41 387: >>> START 387: This problem is unconstrained. 387: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.043 s ] 387: CMIN 0.00 CAVG 0.00 CMAX 0.00 387: LSD 0.00 387: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.032 s ] 387: CMIN -0.42 CAVG -0.00 CMAX 0.04 387: LSD 1.00 387: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.027 s ] 387: CMIN -2.08 CAVG -0.02 CMAX 0.22 387: LSD 5.00 387: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.029 s ] 387: CMIN -8.76 CAVG -0.07 CMAX 0.93 387: LSD 21.00 387: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.004 s ] 387: CMIN -35.44 CAVG -0.29 CMAX 3.78 387: LSD 85.00 387: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.018 s ] 387: CMIN -126.28 CAVG -0.93 CMAX 14.98 387: LSD 199.65 387: [2] xf_out->m_type = 9, xf_in->m_type = 0 387: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 387: bspline_xform_initialize 387: rdims = (5,5,5) 387: vox_per_rgn = (8,8,8) 387: cdims = (8 8 8) 387: ** Registration worker thread finished. 387: Writing transformation ... 387: Warping... 387: Running: plm_warp_native 387: Converting input image... 387: Converting xform... 387: bspline_xform_initialize 387: rdims = (5,5,5) 387: vox_per_rgn = (8,8,8) 387: cdims = (8 8 8) 387: Creating output vf... 387: Creating output volume... 387: Running native warper... 387: bspline_warp complete. 387: Back convert to original type... 387: > Convert vf to itk 387: > Conversion complete. 387: plm_warp_native is complete. 387: Saving image... 387: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd 387: Saving vf... 387: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-vf.nrrd 387: Load: 0.0227451 387: Run: 0.185044 387: Save: 0.0757239 387: Total: 0.283513 387: Finished! 387: 387: STDERR: 387: Not an error 129/571 Test #387: plm-bsp-dcos-a ........................ Passed 0.37 sec test 399 Start 399: plm-bsp-dcos-e 399: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 399: Test timeout computed to be: 1500 396: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 396: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt 396: EXPECTED_ERRNO is 399: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 399: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt 399: EXPECTED_ERRNO is 390: RETVAL: 0 390: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-5.mha 390: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 390: Launching registration worker thread 390: Inside registration worker thread 390: Doing registration stage 390: [1] xf_in->m_type = 0, xf_out->m_type = 0 390: RESAMPLE 1 1: (2 2 2), (2 2 2) 390: RESAMPLE 1 1: (2 2 2), (2 2 2) 390: volume_calc_grad complete. 390: bspline_xform_initialize 390: Warning: vox_per_rgn was less than 4. 390: Warning: vox_per_rgn was less than 4. 390: Warning: vox_per_rgn was less than 4. 390: rdims = (5,5,5) 390: vox_per_rgn = (4,4,4) 390: cdims = (8 8 8) 390: Algorithm flavor = g 390: Threading = 0 390: >> Checking JH allocation 390: BSPLINE PARMS 390: max_its = 5 390: max_feval = 5 390: BSPLINE XFORM HEADER 390: vox_per_rgn = 4 4 4 390: roi_offset = 0 0 0 390: roi_dim = 19 19 19 390: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 390: BST METRICS 390: MET 110100 MSE 1.000000 390: Setting nmax, mmax = 1536 41 390: >>> START 390: This problem is unconstrained. 390: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.051 s ] 390: CMIN 0.00 CAVG 0.00 CMAX 0.00 390: LSD 0.00 390: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.030 s ] 390: CMIN -0.09 CAVG 0.00 CMAX 0.49 390: LSD 1.00 390: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.030 s ] 390: CMIN -0.46 CAVG 0.01 CMAX 2.46 390: LSD 5.00 390: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.020 s ] 390: CMIN -1.93 CAVG 0.04 CMAX 10.33 390: LSD 21.00 390: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.044 s ] 390: CMIN -14.50 CAVG 0.20 CMAX 61.00 390: LSD 95.90 390: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.022 s ] 390: CMIN -12.15 CAVG 0.16 CMAX 47.74 390: LSD 26.24 390: [2] xf_out->m_type = 9, xf_in->m_type = 0 390: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 390: bspline_xform_initialize 390: rdims = (5,5,5) 390: vox_per_rgn = (8,8,8) 390: cdims = (8 8 8) 390: ** Registration worker thread finished. 390: Writing transformation ... 390: Warping... 390: Running: plm_warp_native 390: Converting input image... 390: Converting xform... 390: bspline_xform_initialize 390: rdims = (5,5,5) 390: vox_per_rgn = (8,8,8) 390: cdims = (8 8 8) 390: Creating output vf... 390: Creating output volume... 390: Running native warper... 390: bspline_warp complete. 390: Back convert to original type... 390: > Convert vf to itk 390: > Conversion complete. 390: plm_warp_native is complete. 390: Saving image... 390: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd 390: Saving vf... 390: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-vf.nrrd 390: Load: 0.020232 390: Run: 0.227748 390: Save: 0.0570309 390: Total: 0.305011 390: Finished! 390: 390: STDERR: 390: Not an error 130/571 Test #390: plm-bsp-dcos-b ........................ Passed 0.38 sec test 402 Start 402: plm-bsp-dcos-f 402: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 402: Test timeout computed to be: 1500 402: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 402: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt 402: EXPECTED_ERRNO is 399: RETVAL: 0 399: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 399: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-5.mha 399: Launching registration worker thread 399: Inside registration worker thread 399: Doing registration stage 399: [1] xf_in->m_type = 0, xf_out->m_type = 0 399: RESAMPLE 1 1: (2 2 2), (2 2 2) 399: RESAMPLE 1 1: (2 2 2), (2 2 2) 399: volume_calc_grad complete. 399: bspline_xform_initialize 399: Warning: vox_per_rgn was less than 4. 399: Warning: vox_per_rgn was less than 4. 399: Warning: vox_per_rgn was less than 4. 399: rdims = (5,5,5) 399: vox_per_rgn = (4,4,4) 399: cdims = (8 8 8) 399: Algorithm flavor = h 399: Threading = 0 399: >> Checking JH allocation 399: BSPLINE PARMS 399: max_its = 5 399: max_feval = 5 399: BSPLINE XFORM HEADER 399: vox_per_rgn = 4 4 4 399: roi_offset = 0 0 0 399: roi_dim = 19 19 19 399: img_dc = 1 0 0 0 1 0 0 0 1 399: BST METRICS 399: MET 110100 MSE 1.000000 399: Setting nmax, mmax = 1536 41 399: >>> START 399: This problem is unconstrained. 399: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.001 s ] 399: CMIN 0.00 CAVG 0.00 CMAX 0.00 399: LSD 0.00 399: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.001 s ] 399: CMIN -0.42 CAVG -0.00 CMAX 0.04 399: LSD 1.00 399: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.001 s ] 399: CMIN -2.08 CAVG -0.02 CMAX 0.22 399: LSD 5.00 399: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.001 s ] 399: CMIN -8.76 CAVG -0.07 CMAX 0.93 399: LSD 21.00 399: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.001 s ] 399: CMIN -35.44 CAVG -0.29 CMAX 3.78 399: LSD 85.00 399: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.001 s ] 399: CMIN -126.28 CAVG -0.93 CMAX 14.98 399: LSD 199.65 399: [2] xf_out->m_type = 9, xf_in->m_type = 0 399: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 399: bspline_xform_initialize 399: rdims = (5,5,5) 399: vox_per_rgn = (8,8,8) 399: cdims = (8 8 8) 399: Writing transformation ... 399: Warping... 399: Running: plm_warp_native 399: Converting input image... 399: Converting xform... 399: bspline_xform_initialize 399: rdims = (5,5,5) 399: vox_per_rgn = (8,8,8) 399: cdims = (8 8 8) 399: Creating output vf... 399: Creating output volume... 399: Running native warper... 399: ** Registration worker thread finished. 399: bspline_warp complete. 399: Back convert to original type... 399: > Convert vf to itk 399: > Conversion complete. 399: plm_warp_native is complete. 399: Saving image... 399: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd 399: Saving vf... 399: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-vf.nrrd 399: Load: 0.018908 399: Run: 0.010838 399: Save: 0.0850248 399: Total: 0.114771 399: Finished! 399: 399: STDERR: 399: Not an error 131/571 Test #399: plm-bsp-dcos-e ........................ Passed 0.19 sec test 405 Start 405: plm-reg-multi-a 405: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 405: Test timeout computed to be: 1500 405: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 405: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt 405: EXPECTED_ERRNO is 396: RETVAL: 0 396: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-5.mha 396: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 396: Launching registration worker thread 396: Inside registration worker thread 396: Doing registration stage 396: [1] xf_in->m_type = 0, xf_out->m_type = 0 396: RESAMPLE 1 1: (2 2 2), (2 2 2) 396: RESAMPLE 1 1: (2 2 2), (2 2 2) 396: volume_calc_grad complete. 396: bspline_xform_initialize 396: Warning: vox_per_rgn was less than 4. 396: Warning: vox_per_rgn was less than 4. 396: Warning: vox_per_rgn was less than 4. 396: rdims = (5,5,5) 396: vox_per_rgn = (4,4,4) 396: cdims = (8 8 8) 396: Algorithm flavor = c 396: Threading = 0 396: >> Checking JH allocation 396: BSPLINE PARMS 396: max_its = 5 396: max_feval = 5 396: BSPLINE XFORM HEADER 396: vox_per_rgn = 4 4 4 396: roi_offset = 0 0 0 396: roi_dim = 19 19 19 396: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 396: BST METRICS 396: MET 110100 MSE 1.000000 396: Setting nmax, mmax = 1536 41 396: >>> START 396: This problem is unconstrained. 396: [ 0, 0] MSE 2326.658 NV 5814 GM -90.046 GN 30.1 [ 0.002 s ] 396: CMIN 0.00 CAVG 0.00 CMAX 0.00 396: LSD 0.00 396: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.002 s ] 396: CMIN -0.09 CAVG 0.00 CMAX 0.49 396: LSD 1.00 396: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.002 s ] 396: CMIN -0.46 CAVG 0.01 CMAX 2.46 396: LSD 5.00 396: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.002 s ] 396: CMIN -1.93 CAVG 0.04 CMAX 10.33 396: LSD 21.00 396: [ 1, 4] MSE 880.230 NV 5809 GM 22.704 GN 11.1 [ 0.002 s ] 396: CMIN -14.50 CAVG 0.20 CMAX 61.00 396: LSD 95.90 396: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.002 s ] 396: CMIN -12.15 CAVG 0.16 CMAX 47.74 396: LSD 26.24 396: [2] xf_out->m_type = 9, xf_in->m_type = 0 396: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 396: bspline_xform_initialize 396: rdims = (5,5,5) 396: vox_per_rgn = (8,8,8) 396: cdims = (8 8 8) 396: ** Registration worker thread finished. 396: Writing transformation ... 396: Warping... 396: Running: plm_warp_native 396: Converting input image... 396: Converting xform... 396: bspline_xform_initialize 396: rdims = (5,5,5) 396: vox_per_rgn = (8,8,8) 396: cdims = (8 8 8) 396: Creating output vf... 396: Creating output volume... 396: Running native warper... 396: bspline_warp complete. 396: Back convert to original type... 396: > Convert vf to itk 396: > Conversion complete. 396: plm_warp_native is complete. 396: Saving image... 396: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd 396: Saving vf... 396: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-vf.nrrd 396: Load: 0.0188599 396: Run: 0.0183961 396: Save: 0.09108 396: Total: 0.128336 396: Finished! 396: 396: STDERR: 396: Not an error 132/571 Test #396: plm-bsp-dcos-d ........................ Passed 0.21 sec test 408 Start 408: plm-reg-multi-b 408: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 408: Test timeout computed to be: 1500 408: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 408: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt 408: EXPECTED_ERRNO is 402: RETVAL: 0 402: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-5.mha 402: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 402: Launching registration worker thread 402: Inside registration worker thread 402: Doing registration stage 402: [1] xf_in->m_type = 0, xf_out->m_type = 0 402: RESAMPLE 1 1: (2 2 2), (2 2 2) 402: RESAMPLE 1 1: (2 2 2), (2 2 2) 402: volume_calc_grad complete. 402: bspline_xform_initialize 402: Warning: vox_per_rgn was less than 4. 402: Warning: vox_per_rgn was less than 4. 402: Warning: vox_per_rgn was less than 4. 402: rdims = (5,5,5) 402: vox_per_rgn = (4,4,4) 402: cdims = (8 8 8) 402: Algorithm flavor = h 402: Threading = 0 402: >> Checking JH allocation 402: BSPLINE PARMS 402: max_its = 5 402: max_feval = 5 402: BSPLINE XFORM HEADER 402: vox_per_rgn = 4 4 4 402: roi_offset = 0 0 0 402: roi_dim = 19 19 19 402: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 402: BST METRICS 402: MET 110100 MSE 1.000000 402: Setting nmax, mmax = 1536 41 402: >>> START 402: This problem is unconstrained. 402: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.001 s ] 402: CMIN 0.00 CAVG 0.00 CMAX 0.00 402: LSD 0.00 402: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.001 s ] 402: CMIN -0.09 CAVG 0.00 CMAX 0.49 402: LSD 1.00 402: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.001 s ] 402: CMIN -0.46 CAVG 0.01 CMAX 2.46 402: LSD 5.00 402: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.001 s ] 402: CMIN -1.93 CAVG 0.04 CMAX 10.33 402: LSD 21.00 402: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.001 s ] 402: CMIN -14.50 CAVG 0.20 CMAX 61.00 402: LSD 95.90 402: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.001 s ] 402: CMIN -12.15 CAVG 0.16 CMAX 47.74 402: LSD 26.24 402: [2] xf_out->m_type = 9, xf_in->m_type = 0 402: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 402: bspline_xform_initialize 402: rdims = (5,5,5) 402: vox_per_rgn = (8,8,8) 402: cdims = (8 8 8) 402: ** Registration worker thread finished. 402: Writing transformation ... 402: Warping... 402: Running: plm_warp_native 402: Converting input image... 402: Converting xform... 402: bspline_xform_initialize 402: rdims = (5,5,5) 402: vox_per_rgn = (8,8,8) 402: cdims = (8 8 8) 402: Creating output vf... 402: Creating output volume... 402: Running native warper... 402: bspline_warp complete. 402: Back convert to original type... 402: > Convert vf to itk 402: > Conversion complete. 402: plm_warp_native is complete. 402: Saving image... 402: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd 402: Saving vf... 402: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-vf.nrrd 402: Load: 0.0492871 402: Run: 0.0222659 402: Save: 0.0543408 402: Total: 0.125894 402: Finished! 402: 402: STDERR: 402: Not an error 133/571 Test #402: plm-bsp-dcos-f ........................ Passed 0.19 sec test 411 Start 411: plm-reg-dv-itk-translation 411: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 411: Test timeout computed to be: 1500 411: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 411: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt 411: EXPECTED_ERRNO is 405: RETVAL: 0 405: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 405: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 405: Launching registration worker thread 405: Inside registration worker thread 405: Doing registration stage 405: [1] xf_in->m_type = 0, xf_out->m_type = 0 405: Fixed image for this stage: 405: Dim = 19 19 19 405: Origin = -236.842 -236.842 -236.842 405: Spacing = 26.3158 26.3158 26.3158 405: Direction Cosines = 405: 1 0 0 405: 0 1 0 405: 0 0 1 405: Moving image for this stage: 405: Dim = 19 19 19 405: Origin = -236.842 -236.842 -236.842 405: Spacing = 26.3158 26.3158 26.3158 405: Direction Cosines = 405: 1 0 0 405: 0 1 0 405: 0 0 1 405: Initial Parameters = [0, 0, 0, 0, 0, 0] 405: Starting ITK registration 405: StartEvent: [0, 0, 0, 0, 0, 0] 405: MSE [ 0, 0,10.00] 2961.438 [1.5937427139384403e-23, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.1779009000267946e-15, -4.874217716697927e-15] * 405: MSE [ 1, 1,10.00] 2086.091 [-2.165384511354088e-18, -3.3499860475672906e-7, 3.3499860572594555e-7, -19.999999999999872, -9.942357123285172e-7, -9.942357120533767e-7] -875.35 * 405: MSE [ 2, 2, 5.00] 1944.674 [-1.8065728867272908e-17, -0.0000020387763678232375, 0.000002038776387464082, -15.000000000094076, -0.00002242796102236697, -0.000022427960964199054] -141.42 * 405: MSE [ 3, 3, 2.50] 1989.993 [-8.209788721550336e-17, -0.000008253984619512625, 0.000008253984726387187, -17.499999999592845, -0.00005557255691253275, -0.00005557255639955584] 45.32 405: MSE [ 4, 4, 2.50] 1946.484 [-1.4812023762460934e-14, -0.001053361772898166, 0.0010533617928242625, -19.99996630522468, -0.008992370046056406, -0.008992369921203607] -43.51 405: EndEvent: [-1.4812023762460934e-14, -0.001053361772898166, 0.0010533617928242625, -19.99996630522468, -0.008992370046056406, -0.008992369921203607] 405: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded. 405: ITK registration complete 405: [2] xf_out->m_type = 2, xf_in->m_type = 0 405: Warping... 405: plm_warp_itk: xform_to_itk_vf 405: plm_warp_itk: convert_to_itk 405: plm_warp_itk: warping... 405: Saving image... 405: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stage-1.mha 405: Doing registration stage 405: [1] xf_in->m_type = 2, xf_out->m_type = 0 405: SUBSAMPLE: (1 1 1), (1 1 1) 405: volume_calc_grad complete. 405: kerx: 0.0000000000 1.0000000000 0.0000000000 405: kery: 0.0000000000 1.0000000000 0.0000000000 405: kerz: 0.0000000000 1.0000000000 0.0000000000 405: MSE [ 0] 4770.7 (0.947) [ 0.005 secs] 405: MSE [ 1] 4770.7 (0.947) [ 0.005 secs] 405: MSE [ 2] 4770.7 (0.947) [ 0.005 secs] 405: MSE [ 3] 4770.7 (0.947) [ 0.005 secs] 405: MSE [ 4] 4770.7 (0.947) [ 0.005 secs] 405: Time for 5 iterations = 0.022732 (0.004546 sec / it) 405: [2] xf_out->m_type = 10, xf_in->m_type = 2 405: Warping... 405: plm_warp_itk: xform_to_itk_vf 405: plm_warp_itk: convert_to_itk 405: plm_warp_itk: warping... 405: Saving image... 405: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-img.nrrd 405: Saving vf... 405: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd 405: Load: 0.018997 405: Run: 0.038753 405: Save: 0.00969696 405: Total: 0.0674469 405: Finished! 405: ** Registration worker thread finished. 405: 405: STDERR: 405: Not an error 134/571 Test #405: plm-reg-multi-a ....................... Passed 0.14 sec test 420 Start 420: plm-reg-process-a 420: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 420: Test timeout computed to be: 1500 420: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 420: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt 420: EXPECTED_ERRNO is 411: RETVAL: 0 411: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 411: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 411: Launching registration worker thread 411: Inside registration worker thread 411: Doing registration stage 411: [1] xf_in->m_type = 0, xf_out->m_type = 0 411: Fixed image for this stage: 411: Dim = 19 19 19 411: Origin = -24.3421 -24.3421 -24.3421 411: Spacing = 2.63158 2.63158 2.63158 411: Direction Cosines = 411: 1 0 0 411: 0 1 0 411: 0 0 1 411: Moving image for this stage: 411: Dim = 19 19 19 411: Origin = -24.3421 -24.3421 -24.3421 411: Spacing = 2.63158 2.63158 2.63158 411: Direction Cosines = 411: 1 0 0 411: 0 1 0 411: 0 0 1 411: Initial Parameters = [0, 0, 0] 411: Starting ITK registration 411: StartEvent: [0, 0, 0] 411: MSE [ 0, 0,10.00] 18756.235 [0, 0, 0] * 411: MSE [ 1, 1, 5.00] 1.116 [9.999997615028184, -0.004883617032987324, -0.004883617032988729] -18755.12 * 411: MSE [ 2, 2, 2.50] 5544.602 [5.318441699151415, 1.2366948554202783, 1.236694855420464] 5543.49 411: MSE [ 3, 3, 2.50] 1453.699 [7.6106519400857895, 0.5310844064629847, 0.5310844064630645] -4090.90 411: MSE [ 4, 4, 1.25] 4.252 [9.9614605854425, -0.07045474975048627, -0.07045474975050126] -1449.45 411: EndEvent: [9.9614605854425, -0.07045474975048627, -0.07045474975050126] 411: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. 411: ITK registration complete 411: [2] xf_out->m_type = 1, xf_in->m_type = 0 411: ** Registration worker thread finished. 411: Writing transformation ... 411: Warping... 411: plm_warp_itk: xform_to_itk_vf 411: plm_warp_itk: convert_to_itk 411: plm_warp_itk: warping... 411: Saving image... 411: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd 411: Saving vf... 411: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-vf.nrrd 411: Load: 0.031579 411: Run: 0.0192142 411: Save: 0.0117068 411: Total: 0.0625 411: Finished! 411: 411: STDERR: 411: Not an error 135/571 Test #411: plm-reg-dv-itk-translation ............ Passed 0.14 sec test 423 Start 423: plm-reg-trans-a 423: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 423: Test timeout computed to be: 1500 423: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 423: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt 423: EXPECTED_ERRNO is 420: RETVAL: 0 420: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 420: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 420: Launching registration worker thread 420: Inside registration worker thread 420: *** Executing adjust process *** 420: ** Registration worker thread finished. 420: Warping... 420: plm_warp_itk: xform_to_itk_vf 420: plm_warp_itk: convert_to_itk 420: plm_warp_itk: warping... 420: Saving image... 420: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha 420: Load: 0.0188069 420: Run: 0.0309091 420: Save: 0.00275183 420: Total: 0.0524678 420: Finished! 420: 420: STDERR: 420: Not an error 136/571 Test #420: plm-reg-process-a ..................... Passed 0.13 sec test 426 Start 426: plm-reg-trans-b 426: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 426: Test timeout computed to be: 1500 426: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 426: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt 426: EXPECTED_ERRNO is 371: RETVAL: 0 371: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 371: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 371: Launching registration worker thread 371: Inside registration worker thread 371: Doing registration stage 371: [1] xf_in->m_type = 0, xf_out->m_type = 0 371: RESAMPLE 1 1: (1 1 1), (1 1 1) 371: RESAMPLE 1 1: (1 1 1), (1 1 1) 371: volume_calc_grad complete. 371: bspline_xform_initialize 371: Warning: vox_per_rgn was less than 4. 371: Warning: vox_per_rgn was less than 4. 371: Warning: vox_per_rgn was less than 4. 371: rdims = (10,10,10) 371: vox_per_rgn = (4,4,4) 371: cdims = (13 13 13) 371: Algorithm flavor = g 371: Threading = 0 371: Regularization: flavor = a lambda = 1.000000 371: >> Checking JH allocation 371: BSPLINE PARMS 371: max_its = 5 371: max_feval = 5 371: BSPLINE XFORM HEADER 371: vox_per_rgn = 4 4 4 371: roi_offset = 0 0 0 371: roi_dim = 38 38 38 371: img_dc = 1 0 0 0 1 0 0 0 1 371: BST METRICS 371: MET 110100 MSE 1.000000 371: Setting nmax, mmax = 6591 83 371: >>> START 371: This problem is unconstrained. 371: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.521 s ] 371: MSE 5540.166 RM 0.000 [ 0.050 | 0.471 ] 371: CMIN 0.00 CAVG 0.00 CMAX 0.00 371: LSD 0.00 371: [ 0, 1] SCORE 5484.185 NV 54872 GM 0.045 GN 27.7 [ 0.307 s ] 371: MSE 5484.124 RM 0.061 [ 0.035 | 0.271 ] 371: CMIN -0.16 CAVG -0.00 CMAX 0.22 371: LSD 1.00 371: [ 0, 2] SCORE 5267.761 NV 54872 GM 0.224 GN 25.8 [ 0.361 s ] 371: MSE 5266.236 RM 1.525 [ 0.015 | 0.345 ] 371: CMIN -0.81 CAVG 0.00 CMAX 1.12 371: LSD 5.00 371: [ 0, 3] SCORE 4511.430 NV 54872 GM 0.928 GN 18.4 [ 0.289 s ] 371: MSE 4484.536 RM 26.894 [ 0.022 | 0.267 ] 371: CMIN -3.39 CAVG 0.00 CMAX 4.70 371: LSD 21.00 371: [ 1, 4] SCORE 3229.400 NV 54872 GM 1.898 GN 2.39 [ 0.229 s ] 371: MSE 3018.981 RM 210.419 [ 0.018 | 0.211 ] 371: CMIN -9.73 CAVG -0.00 CMAX 13.18 371: LSD 40.25 371: [ 2, 5] SCORE 3185.099 NV 54872 GM 4.098 GN 2.08 [ 0.231 s ] 371: MSE 2976.101 RM 208.998 [ 0.016 | 0.215 ] 371: CMIN -9.60 CAVG -0.00 CMAX 13.44 371: LSD 5.50 371: [2] xf_out->m_type = 9, xf_in->m_type = 0 371: ** Registration worker thread finished. 371: Writing transformation ... 371: Warping... 371: Running: plm_warp_native 371: Converting input image... 371: Converting xform... 371: bspline_xform_initialize 371: rdims = (10,10,10) 371: vox_per_rgn = (4,4,4) 371: cdims = (13 13 13) 371: Creating output vf... 371: Creating output volume... 371: Running native warper... 371: bspline_warp complete. 371: Back convert to original type... 371: > Convert vf to itk 371: > Conversion complete. 371: plm_warp_native is complete. 371: Saving image... 371: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-img.mha 371: Saving vf... 371: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha 371: Load: 0.0898869 371: Run: 1.9993 371: Save: 0.0458679 371: Total: 2.13505 371: Finished! 371: 371: STDERR: 371: Not an error 137/571 Test #371: plm-bsp-regularize-numeric ............ Passed 2.34 sec test 429 Start 429: plm-reg-trans-mi-a 429: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 429: Test timeout computed to be: 1500 429: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 429: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt 429: EXPECTED_ERRNO is 408: RETVAL: 0 408: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 408: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 408: Launching registration worker thread 408: Inside registration worker thread 408: Doing registration stage 408: [1] xf_in->m_type = 0, xf_out->m_type = 0 408: RESAMPLE 1 1: (4 4 4), (4 4 4) 408: RESAMPLE 1 1: (4 4 4), (4 4 4) 408: volume_calc_grad complete. 408: bspline_xform_initialize 408: Warning: vox_per_rgn was less than 4. 408: Warning: vox_per_rgn was less than 4. 408: Warning: vox_per_rgn was less than 4. 408: rdims = (3,3,3) 408: vox_per_rgn = (4,4,4) 408: cdims = (6 6 6) 408: Algorithm flavor = g 408: Threading = 0 408: >> Checking JH allocation 408: BSPLINE PARMS 408: max_its = 20 408: max_feval = 20 408: BSPLINE XFORM HEADER 408: vox_per_rgn = 4 4 4 408: roi_offset = 0 0 0 408: roi_dim = 9 9 9 408: img_dc = 1 0 0 0 1 0 0 0 1 408: BST METRICS 408: MET 110100 MSE 1.000000 408: Setting nmax, mmax = 648 27 408: >>> START 408: This problem is unconstrained. 408: [ 0, 0] MSE 1310.066 NV 729 GM 32.312 GN 10.8 [ 0.020 s ] 408: CMIN 0.00 CAVG 0.00 CMAX 0.00 408: LSD 0.00 408: [ 0, 1] MSE 1295.068 NV 729 GM 32.107 GN 10.8 [ 0.015 s ] 408: CMIN -0.80 CAVG -0.00 CMAX 0.03 408: LSD 1.00 408: [ 0, 2] MSE 1236.886 NV 729 GM 31.289 GN 10.5 [ 0.011 s ] 408: CMIN -3.98 CAVG -0.02 CMAX 0.14 408: LSD 5.00 408: [ 0, 3] MSE 1033.121 NV 729 GM 28.011 GN 9.4 [ 0.008 s ] 408: CMIN -16.73 CAVG -0.10 CMAX 0.57 408: LSD 21.00 408: [ 1, 4] MSE 1227.425 NV 729 GM -31.287 GN 10.6 [ 0.012 s ] 408: CMIN -130.39 CAVG -0.75 CMAX 15.78 408: LSD 145.43 408: [ 1, 5] MSE 666.262 NV 729 GM 16.009 GN 5.49 [ 0.023 s ] 408: CMIN -63.32 CAVG -0.36 CMAX 6.81 408: LSD 59.61 408: [ 2, 6] MSE 1232.974 NV 729 GM -31.573 GN 10.6 [ 0.021 s ] 408: CMIN -133.31 CAVG -0.76 CMAX 26.37 408: LSD 96.76 408: [ 2, 7] MSE 663.364 NV 729 GM -16.837 GN 5.81 [ 0.024 s ] 408: CMIN -74.19 CAVG -0.42 CMAX 9.85 408: LSD 15.03 408: [ 3, 8] MSE 654.961 NV 729 GM -10.617 GN 3.9 [ 0.029 s ] 408: CMIN -69.17 CAVG -0.40 CMAX 9.75 408: LSD 6.20 408: [ 4, 9] MSE 648.056 NV 729 GM 16.849 GN 5.74 [ 0.022 s ] 408: CMIN -59.17 CAVG -0.35 CMAX 12.07 408: LSD 13.05 408: [ 4, 10] MSE 648.518 NV 729 GM 6.481 GN 2.37 [ 0.021 s ] 408: CMIN -64.64 CAVG -0.37 CMAX 10.80 408: LSD 5.91 408: [ 5, 11] MSE 642.586 NV 729 GM -2.800 GN 1.61 [ 0.008 s ] 408: CMIN -65.72 CAVG -0.38 CMAX 12.16 408: LSD 3.39 408: [ 6, 12] MSE 621.446 NV 729 GM -3.050 GN 1.62 [ 0.022 s ] 408: CMIN -65.92 CAVG -0.39 CMAX 17.36 408: LSD 11.87 408: [ 6, 13] MSE 550.866 NV 729 GM -6.628 GN 2.45 [ 0.018 s ] 408: CMIN -66.69 CAVG -0.41 CMAX 38.13 408: LSD 59.33 408: [ 7, 14] MSE 512.605 NV 729 GM -3.857 GN 1.62 [ 0.020 s ] 408: CMIN -62.22 CAVG -0.42 CMAX 47.82 408: LSD 24.85 408: [ 7, 15] MSE 447.450 NV 729 GM 1.527 GN 1.38 [ 0.020 s ] 408: CMIN -86.57 CAVG -0.48 CMAX 86.57 408: LSD 124.23 408: [ 7, 16] MSE 464.351 NV 729 GM 2.120 GN 1.3 [ 0.022 s ] 408: CMIN -65.28 CAVG -0.45 CMAX 65.28 408: LSD 69.63 408: [ 8, 17] MSE 472.701 NV 729 GM -6.632 GN 2.42 [ 0.021 s ] 408: CMIN -65.88 CAVG -0.45 CMAX 65.88 408: LSD 10.76 408: [ 8, 18] MSE 465.428 NV 729 GM 2.619 GN 1.34 [ 0.021 s ] 408: CMIN -65.36 CAVG -0.45 CMAX 65.36 408: LSD 1.50 408: [ 8, 19] MSE 464.475 NV 729 GM 2.117 GN 1.3 [ 0.054 s ] 408: CMIN -65.29 CAVG -0.45 CMAX 65.29 408: LSD 0.17 408: [ 8, 20] MSE 464.365 NV 729 GM 2.120 GN 1.3 [ 0.006 s ] 408: CMIN -65.28 CAVG -0.45 CMAX 65.28 408: LSD 0.02 408: [2] xf_out->m_type = 9, xf_in->m_type = 0 408: Doing registration stage 408: [1] xf_in->m_type = 9, xf_out->m_type = 0 408: RESAMPLE 1 1: (1 1 1), (1 1 1) 408: RESAMPLE 1 1: (1 1 1), (1 1 1) 408: volume_calc_grad complete. 408: bspline_xform_initialize 408: Warning: vox_per_rgn was less than 4. 408: Warning: vox_per_rgn was less than 4. 408: Warning: vox_per_rgn was less than 4. 408: rdims = (10,10,10) 408: vox_per_rgn = (4,4,4) 408: cdims = (13 13 13) 408: Algorithm flavor = g 408: Threading = 0 408: >> Checking JH allocation 408: BSPLINE PARMS 408: max_its = 20 408: max_feval = 20 408: BSPLINE XFORM HEADER 408: vox_per_rgn = 4 4 4 408: roi_offset = 0 0 0 408: roi_dim = 38 38 38 408: img_dc = 1 0 0 0 1 0 0 0 1 408: BST METRICS 408: MET 110100 MSE 1.000000 408: Setting nmax, mmax = 6591 83 408: >>> START 408: This problem is unconstrained. 408: [ 0, 0] MSE 2187.416 NV 54548 GM -54.885 GN 20.1 [ 0.013 s ] 408: CMIN -34.32 CAVG -2.98 CMAX 34.99 408: LSD 0.00 408: [ 0, 1] MSE 2164.676 NV 54548 GM -53.547 GN 19.7 [ 0.024 s ] 408: CMIN -34.32 CAVG -2.98 CMAX 34.99 408: LSD 1.00 408: [ 0, 2] MSE 2077.643 NV 54548 GM -48.153 GN 18.1 [ 0.015 s ] 408: CMIN -34.32 CAVG -2.98 CMAX 34.99 408: LSD 5.00 408: [ 1, 3] MSE 1531.465 NV 54548 GM -5.028 GN 6.72 [ 0.010 s ] 408: CMIN -34.32 CAVG -2.97 CMAX 34.99 408: LSD 49.50 408: [ 2, 4] MSE 1454.329 NV 54548 GM 33.264 GN 9.36 [ 0.023 s ] 408: CMIN -34.74 CAVG -2.96 CMAX 34.99 408: LSD 27.82 408: [ 3, 5] MSE 1285.873 NV 54548 GM 41.621 GN 9.3 [ 0.024 s ] 408: CMIN -38.62 CAVG -2.96 CMAX 34.99 408: LSD 33.32 408: [ 4, 6] MSE 601.694 NV 54548 GM -58.120 GN 12.7 [ 0.024 s ] 408: CMIN -66.67 CAVG -3.01 CMAX 47.45 408: LSD 225.15 408: [ 5, 7] MSE 543.836 NV 54548 GM 31.901 GN 9.57 [ 0.024 s ] 408: CMIN -66.22 CAVG -2.99 CMAX 59.99 408: LSD 53.14 408: [ 6, 8] MSE 418.242 NV 54548 GM 12.804 GN 3.31 [ 0.028 s ] 408: CMIN -65.97 CAVG -3.00 CMAX 53.84 408: LSD 23.35 408: [ 7, 9] MSE 404.446 NV 54548 GM -9.046 GN 2.82 [ 0.027 s ] 408: CMIN -67.92 CAVG -3.00 CMAX 54.77 408: LSD 12.26 408: [ 8, 10] MSE 385.397 NV 54548 GM -5.940 GN 2.61 [ 0.013 s ] 408: CMIN -68.58 CAVG -3.00 CMAX 55.54 408: LSD 8.37 408: [ 9, 11] MSE 330.971 NV 54548 GM -28.234 GN 4.05 [ 0.012 s ] 408: CMIN -72.02 CAVG -3.01 CMAX 62.09 408: LSD 44.90 408: [10, 12] MSE 292.026 NV 54548 GM -5.908 GN 2.66 [ 0.007 s ] 408: CMIN -74.57 CAVG -3.00 CMAX 67.66 408: LSD 33.62 408: [11, 13] MSE 251.369 NV 54548 GM 4.024 GN 2.37 [ 0.010 s ] 408: CMIN -84.98 CAVG -2.99 CMAX 73.83 408: LSD 50.34 408: [12, 14] MSE 228.758 NV 54548 GM 11.643 GN 4.01 [ 0.016 s ] 408: CMIN -98.90 CAVG -2.97 CMAX 76.10 408: LSD 60.96 408: [13, 15] MSE 306.308 NV 54548 GM 49.796 GN 7.96 [ 0.012 s ] 408: CMIN -130.24 CAVG -2.94 CMAX 83.22 408: LSD 135.53 408: [13, 16] MSE 226.800 NV 54548 GM 20.941 GN 4.12 [ 0.023 s ] 408: CMIN -103.93 CAVG -2.96 CMAX 76.84 408: LSD 21.75 408: [14, 17] MSE 205.578 NV 54548 GM 24.444 GN 3.6 [ 0.012 s ] 408: CMIN -117.55 CAVG -2.96 CMAX 78.37 408: LSD 53.89 408: [15, 18] MSE 158.105 NV 54548 GM 6.383 GN 1.69 [ 0.008 s ] 408: CMIN -116.51 CAVG -2.96 CMAX 72.95 408: LSD 24.10 408: [16, 19] MSE 139.232 NV 54548 GM -1.923 GN 1.28 [ 0.014 s ] 408: CMIN -119.83 CAVG -2.96 CMAX 72.22 408: LSD 15.80 408: [17, 20] MSE 119.453 NV 54548 GM -6.009 GN 1.45 [ 0.016 s ] 408: CMIN -128.50 CAVG -2.96 CMAX 71.16 408: LSD 33.91 408: [2] xf_out->m_type = 9, xf_in->m_type = 9 408: ** Registration worker thread finished. 408: Warping... 408: Running: plm_warp_native 408: Converting input image... 408: Converting xform... 408: bspline_xform_initialize 408: rdims = (10,10,10) 408: vox_per_rgn = (4,4,4) 408: cdims = (13 13 13) 408: Creating output volume... 408: Running native warper... 408: bspline_warp complete. 408: Back convert to original type... 408: plm_warp_native is complete. 408: Saving image... 408: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd 408: Load: 0.0192242 408: Run: 0.820646 408: Save: 0.0448012 408: Total: 0.884671 408: Finished! 408: 408: STDERR: 408: Not an error 138/571 Test #408: plm-reg-multi-b ....................... Passed 0.97 sec test 432 Start 432: plm-reg-autores-a 432: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 432: Test timeout computed to be: 1500 432: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 432: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt 432: EXPECTED_ERRNO is 426: RETVAL: 0 426: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 426: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 426: Launching registration worker thread 426: Inside registration worker thread 426: Doing registration stage 426: [1] xf_in->m_type = 0, xf_out->m_type = 0 426: RESAMPLE 1 1: (1 1 1), (1 1 1) 426: RESAMPLE 1 1: (1 1 1), (1 1 1) 426: volume_calc_grad complete. 426: Computing grid search extent. 426: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 426: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 426: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 426: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 426: [0 0 0] 18945.9 * 426: Global grid search 426: [-10 -10 -10] 109949 426: [-6 -10 -10] 96800 426: [-2 -10 -10] 79011.9 426: [2 -10 -10] 66244.1 426: [6 -10 -10] 61932.6 426: [10 -10 -10] 63642.7 426: [-10 -6 -10] 95633.9 426: [-6 -6 -10] 81703.4 426: [-2 -6 -10] 63642.4 426: [2 -6 -10] 49838.6 426: [6 -6 -10] 43366.8 426: [10 -6 -10] 43154 426: [-10 -2 -10] 84842.6 426: [-6 -2 -10] 71049.9 426: [-2 -2 -10] 53542.3 426: [2 -2 -10] 39751 426: [6 -2 -10] 32450.7 426: [10 -2 -10] 31286.8 426: [-10 2 -10] 84829.9 426: [-6 2 -10] 71041.2 426: [-2 2 -10] 53536.6 426: [2 2 -10] 39746.7 426: [6 2 -10] 32446.9 426: [10 2 -10] 31283.5 426: [-10 6 -10] 95561.4 426: [-6 6 -10] 81658.4 426: [-2 6 -10] 63613.3 426: [2 6 -10] 49813.8 426: [6 6 -10] 43342.5 426: [10 6 -10] 43131.5 426: [-10 10 -10] 109668 426: [-6 10 -10] 96633.8 426: [-2 10 -10] 78907 426: [2 10 -10] 66152.1 426: [6 10 -10] 61839.3 426: [10 10 -10] 63556.7 426: [-10 -10 -6] 95633.9 426: [-6 -10 -6] 81703.4 426: [-2 -10 -6] 63642.4 426: [2 -10 -6] 49838.6 426: [6 -10 -6] 43366.8 426: [10 -10 -6] 43154 426: [-10 -6 -6] 82028.8 426: [-6 -6 -6] 67247.9 426: [-2 -6 -6] 48818.3 426: [2 -6 -6] 33916.9 426: [6 -6 -6] 25278 426: [10 -6 -6] 23165.8 426: [-10 -2 -6] 72112.1 426: [-6 -2 -6] 57467.9 426: [-2 -2 -6] 39558.4 426: [2 -2 -6] 24681.2 426: [6 -2 -6] 15293.3 * 426: [10 -2 -6] 12314.7 * 426: [-10 2 -6] 72100.9 426: [-6 2 -6] 57460.6 426: [-2 2 -6] 39554 426: [2 2 -6] 24678.2 426: [6 2 -6] 15291.1 426: [10 2 -6] 12313 * 426: [-10 6 -6] 81963.5 426: [-6 6 -6] 67208.4 426: [-2 6 -6] 48793.6 426: [2 6 -6] 33896.7 426: [6 6 -6] 25258.7 426: [10 6 -6] 23148.6 426: [-10 10 -6] 95379.4 426: [-6 10 -6] 81554.8 426: [-2 10 -6] 63550.9 426: [2 10 -6] 49759.6 426: [6 10 -6] 43287.7 426: [10 10 -6] 43082.4 426: [-10 -10 -2] 84842.6 426: [-6 -10 -2] 71049.9 426: [-2 -10 -2] 53542.3 426: [2 -10 -2] 39751 426: [6 -10 -2] 32450.7 426: [10 -10 -2] 31286.8 426: [-10 -6 -2] 72112.1 426: [-6 -6 -2] 57467.9 426: [-2 -6 -2] 39558.4 426: [2 -6 -2] 24681.2 426: [6 -6 -2] 15293.3 426: [10 -6 -2] 12314.7 426: [-10 -2 -2] 63010.9 426: [-6 -2 -2] 48498.1 426: [-2 -2 -2] 31072.4 426: [2 -2 -2] 16224.1 426: [6 -2 -2] 6155.79 * 426: [10 -2 -2] 2386.22 * 426: [-10 2 -2] 63000.9 426: [-6 2 -2] 48491.8 426: [-2 2 -2] 31068.8 426: [2 2 -2] 16221.9 426: [6 2 -2] 6154.44 426: [10 2 -2] 2385.44 * 426: [-10 6 -2] 72052.8 426: [-6 6 -2] 57432.4 426: [-2 6 -2] 39536.8 426: [2 6 -2] 24663.8 426: [6 6 -2] 15277.1 426: [10 6 -2] 12300.5 426: [-10 10 -2] 84610.1 426: [-6 10 -2] 70915.1 426: [-2 10 -2] 53460.4 426: [2 10 -2] 39681 426: [6 10 -2] 32381 426: [10 10 -2] 31224.4 426: [-10 -10 2] 84829.9 426: [-6 -10 2] 71041.2 426: [-2 -10 2] 53536.6 426: [2 -10 2] 39746.7 426: [6 -10 2] 32446.9 426: [10 -10 2] 31283.5 426: [-10 -6 2] 72100.9 426: [-6 -6 2] 57460.6 426: [-2 -6 2] 39554 426: [2 -6 2] 24678.2 426: [6 -6 2] 15291.1 426: [10 -6 2] 12313 426: [-10 -2 2] 63000.9 426: [-6 -2 2] 48491.8 426: [-2 -2 2] 31068.8 426: [2 -2 2] 16221.9 426: [6 -2 2] 6154.44 426: [10 -2 2] 2385.44 426: [-10 2 2] 62990.9 426: [-6 2 2] 48485.5 426: [-2 2 2] 31065.2 426: [2 2 2] 16219.7 426: [6 2 2] 6153.1 426: [10 2 2] 2384.66 * 426: [-10 6 2] 72041.7 426: [-6 6 2] 57425.2 426: [-2 6 2] 39532.4 426: [2 6 2] 24660.8 426: [6 6 2] 15274.9 426: [10 6 2] 12298.9 426: [-10 10 2] 84597.7 426: [-6 10 2] 70906.7 426: [-2 10 2] 53454.9 426: [2 10 2] 39676.9 426: [6 10 2] 32377.5 426: [10 10 2] 31221.4 426: [-10 -10 6] 95561.4 426: [-6 -10 6] 81658.4 426: [-2 -10 6] 63613.3 426: [2 -10 6] 49813.8 426: [6 -10 6] 43342.5 426: [10 -10 6] 43131.5 426: [-10 -6 6] 81963.5 426: [-6 -6 6] 67208.4 426: [-2 -6 6] 48793.6 426: [2 -6 6] 33896.7 426: [6 -6 6] 25258.7 426: [10 -6 6] 23148.6 426: [-10 -2 6] 72052.8 426: [-6 -2 6] 57432.4 426: [-2 -2 6] 39536.8 426: [2 -2 6] 24663.8 426: [6 -2 6] 15277.1 426: [10 -2 6] 12300.5 426: [-10 2 6] 72041.7 426: [-6 2 6] 57425.2 426: [-2 2 6] 39532.4 426: [2 2 6] 24660.8 426: [6 2 6] 15274.9 426: [10 2 6] 12298.9 426: [-10 6 6] 81898.9 426: [-6 6 6] 67169.4 426: [-2 6 6] 48769.5 426: [2 6 6] 33876.9 426: [6 6 6] 25240 426: [10 6 6] 23132 426: [-10 10 6] 95309.5 426: [-6 10 6] 81512.3 426: [-2 10 6] 63524.1 426: [2 10 6] 49737.2 426: [6 10 6] 43266 426: [10 10 6] 43062.8 426: [-10 -10 10] 109668 426: [-6 -10 10] 96633.8 426: [-2 -10 10] 78907 426: [2 -10 10] 66152.1 426: [6 -10 10] 61839.3 426: [10 -10 10] 63556.7 426: [-10 -6 10] 95379.4 426: [-6 -6 10] 81554.8 426: [-2 -6 10] 63550.9 426: [2 -6 10] 49759.6 426: [6 -6 10] 43287.7 426: [10 -6 10] 43082.4 426: [-10 -2 10] 84610.1 426: [-6 -2 10] 70915.1 426: [-2 -2 10] 53460.4 426: [2 -2 10] 39681 426: [6 -2 10] 32381 426: [10 -2 10] 31224.4 426: [-10 2 10] 84597.7 426: [-6 2 10] 70906.7 426: [-2 2 10] 53454.9 426: [2 2 10] 39676.9 426: [6 2 10] 32377.5 426: [10 2 10] 31221.4 426: [-10 6 10] 95309.5 426: [-6 6 10] 81512.3 426: [-2 6 10] 63524.1 426: [2 6 10] 49737.2 426: [6 6 10] 43266 426: [10 6 10] 43062.8 426: [-10 10 10] 109399 426: [-6 10 10] 96478.4 426: [-2 10 10] 78812.5 426: [2 10 10] 66070.4 426: [6 10 10] 61757.4 426: [10 10 10] 63483 426: [2] xf_out->m_type = 1, xf_in->m_type = 0 426: Doing registration stage 426: [1] xf_in->m_type = 1, xf_out->m_type = 0 426: RESAMPLE 1 1: (1 1 1), (1 1 1) 426: RESAMPLE 1 1: (1 1 1), (1 1 1) 426: volume_calc_grad complete. 426: Computing grid search extent. 426: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 426: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 426: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 426: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 426: [10 2 2] 2384.66 * 426: Local grid search 426: [6.4 -1.6 -1.6] 4439.65 426: [8.8 -1.6 -1.6] 1771.35 * 426: [11.2 -1.6 -1.6] 1856.67 426: [13.6 -1.6 -1.6] 4787.36 426: [6.4 0.8 -1.6] 3954.1 426: [8.8 0.8 -1.6] 1244.73 * 426: [11.2 0.8 -1.6] 1300.61 426: [13.6 0.8 -1.6] 4226.79 426: [6.4 3.2 -1.6] 6520.93 426: [8.8 3.2 -1.6] 3949.58 426: [11.2 3.2 -1.6] 4155.43 426: [13.6 3.2 -1.6] 7178.92 426: [6.4 5.6 -1.6] 12337.8 426: [8.8 5.6 -1.6] 10089.9 426: [11.2 5.6 -1.6] 10636.9 426: [13.6 5.6 -1.6] 13872 426: [6.4 -1.6 0.8] 3954.1 426: [8.8 -1.6 0.8] 1244.73 * 426: [11.2 -1.6 0.8] 1300.61 426: [13.6 -1.6 0.8] 4226.79 426: [6.4 0.8 0.8] 3466.53 426: [8.8 0.8 0.8] 715.907 * 426: [11.2 0.8 0.8] 742.224 426: [13.6 0.8 0.8] 3663.89 426: [6.4 3.2 0.8] 6031.02 426: [8.8 3.2 0.8] 3418.24 426: [11.2 3.2 0.8] 3594.38 426: [13.6 3.2 0.8] 6613.31 426: [6.4 5.6 0.8] 11844.3 426: [8.8 5.6 0.8] 9554.72 426: [11.2 5.6 0.8] 10071.8 426: [13.6 5.6 0.8] 13302.2 426: [6.4 -1.6 3.2] 6520.93 426: [8.8 -1.6 3.2] 3949.58 426: [11.2 -1.6 3.2] 4155.43 426: [13.6 -1.6 3.2] 7178.92 426: [6.4 0.8 3.2] 6031.02 426: [8.8 0.8 3.2] 3418.24 426: [11.2 0.8 3.2] 3594.38 426: [13.6 0.8 3.2] 6613.31 426: [6.4 3.2 3.2] 8673.76 426: [8.8 3.2 3.2] 6203.3 426: [11.2 3.2 3.2] 6533.85 426: [13.6 3.2 3.2] 9652.77 426: [6.4 5.6 3.2] 14655.7 426: [8.8 5.6 3.2] 12518.1 426: [11.2 5.6 3.2] 13199.5 426: [13.6 5.6 3.2] 16535.7 426: [6.4 -1.6 5.6] 12337.8 426: [8.8 -1.6 5.6] 10089.9 426: [11.2 -1.6 5.6] 10636.9 426: [13.6 -1.6 5.6] 13872 426: [6.4 0.8 5.6] 11844.3 426: [8.8 0.8 5.6] 9554.72 426: [11.2 0.8 5.6] 10071.8 426: [13.6 0.8 5.6] 13302.2 426: [6.4 3.2 5.6] 14655.7 426: [8.8 3.2 5.6] 12518.1 426: [11.2 3.2 5.6] 13199.5 426: [13.6 3.2 5.6] 16535.7 426: [6.4 5.6 5.6] 20999.9 426: [8.8 5.6 5.6] 19216 426: [11.2 5.6 5.6] 20269.6 426: [13.6 5.6 5.6] 23835.8 426: [2] xf_out->m_type = 1, xf_in->m_type = 1 426: ** Registration worker thread finished. 426: Warping... 426: plm_warp_itk: xform_to_itk_vf 426: plm_warp_itk: convert_to_itk 426: plm_warp_itk: warping... 426: Saving image... 426: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha 426: Load: 0.043745 426: Run: 0.630411 426: Save: 0.00282001 426: Total: 0.676976 426: Finished! 426: 426: STDERR: 426: Not an error 139/571 Test #426: plm-reg-trans-b ....................... Passed 0.79 sec test 435 Start 435: plm-reg-autores-b 435: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 435: Test timeout computed to be: 1500 435: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 435: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt 435: EXPECTED_ERRNO is 432: RETVAL: 0 432: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 432: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 432: Launching registration worker thread 432: Inside registration worker thread 432: Doing registration stage 432: [1] xf_in->m_type = 0, xf_out->m_type = 0 432: RESAMPLE 2 1: (3 3 3), (3 3 3) 432: RESAMPLE 2 1: (3 3 3), (3 3 3) 432: volume_calc_grad complete. 432: Computing grid search extent. 432: Dimension 0, mo=0.8 F=(-25, 51) M=(-25, 51) 432: Dimension 1, mo=0.8 F=(-25, 51) M=(-25, 51) 432: Dimension 2, mo=0.8 F=(-25, 51) M=(-25, 51) 432: Native grid search extent: (-10.2, 10.2), (-10.2, 10.2), (-10.2, 10.2) 432: [0 0 0] 17783.3 * 432: Global grid search 432: [-10.2 -10.2 -10.2] 92384.1 432: [-6.12 -10.2 -10.2] 83802.1 432: [-2.04 -10.2 -10.2] 69480.8 432: [2.04 -10.2 -10.2] 58333.1 432: [6.12 -10.2 -10.2] 54296.4 432: [10.2 -10.2 -10.2] 54999.5 432: [-10.2 -6.12 -10.2] 82405.6 432: [-6.12 -6.12 -10.2] 72624.1 432: [-2.04 -6.12 -10.2] 57400.6 432: [2.04 -6.12 -10.2] 44980.1 432: [6.12 -6.12 -10.2] 39080.6 432: [10.2 -6.12 -10.2] 38440 432: [-10.2 -2.04 -10.2] 74449.5 432: [-6.12 -2.04 -10.2] 64281.8 432: [-2.04 -2.04 -10.2] 49076.9 432: [2.04 -2.04 -10.2] 36415.9 432: [6.12 -2.04 -10.2] 29734.1 432: [10.2 -2.04 -10.2] 28403 432: [-10.2 2.04 -10.2] 74429.6 432: [-6.12 2.04 -10.2] 64267.5 432: [-2.04 2.04 -10.2] 49066.9 432: [2.04 2.04 -10.2] 36408.4 432: [6.12 2.04 -10.2] 29728.1 432: [10.2 2.04 -10.2] 28397.5 432: [-10.2 6.12 -10.2] 82364.6 432: [-6.12 6.12 -10.2] 72609.5 432: [-2.04 6.12 -10.2] 57395.9 432: [2.04 6.12 -10.2] 44976.1 432: [6.12 6.12 -10.2] 39078.9 432: [10.2 6.12 -10.2] 38440.1 432: [-10.2 10.2 -10.2] 92397.6 432: [-6.12 10.2 -10.2] 83916.7 432: [-2.04 10.2 -10.2] 69619.2 432: [2.04 10.2 -10.2] 58464.4 432: [6.12 10.2 -10.2] 54439.9 432: [10.2 10.2 -10.2] 55157.8 432: [-10.2 -10.2 -6.12] 82405.6 432: [-6.12 -10.2 -6.12] 72624.1 432: [-2.04 -10.2 -6.12] 57400.6 432: [2.04 -10.2 -6.12] 44980.1 432: [6.12 -10.2 -6.12] 39080.6 432: [10.2 -10.2 -6.12] 38440 432: [-10.2 -6.12 -6.12] 72448.6 432: [-6.12 -6.12 -6.12] 61337.3 432: [-2.04 -6.12 -6.12] 45076.3 432: [2.04 -6.12 -6.12] 31252.4 432: [6.12 -6.12 -6.12] 23367.4 432: [10.2 -6.12 -6.12] 21314.6 432: [-10.2 -2.04 -6.12] 64832.7 432: [-6.12 -2.04 -6.12] 53317.9 432: [-2.04 -2.04 -6.12] 37043.2 432: [2.04 -2.04 -6.12] 22959.6 432: [6.12 -2.04 -6.12] 14296.9 * 432: [10.2 -2.04 -6.12] 11566.7 * 432: [-10.2 2.04 -6.12] 64815.2 432: [-6.12 2.04 -6.12] 53306.1 432: [-2.04 2.04 -6.12] 37035.8 432: [2.04 2.04 -6.12] 22954.9 432: [6.12 2.04 -6.12] 14294.1 432: [10.2 2.04 -6.12] 11564.7 * 432: [-10.2 6.12 -6.12] 72412.3 432: [-6.12 6.12 -6.12] 61325.8 432: [-2.04 6.12 -6.12] 45074.1 432: [2.04 6.12 -6.12] 31250.7 432: [6.12 6.12 -6.12] 23367.9 432: [10.2 6.12 -6.12] 21317 432: [-10.2 10.2 -6.12] 82423.5 432: [-6.12 10.2 -6.12] 72736.2 432: [-2.04 10.2 -6.12] 57532.8 432: [2.04 10.2 -6.12] 45103.1 432: [6.12 10.2 -6.12] 39213.4 432: [10.2 10.2 -6.12] 38586 432: [-10.2 -10.2 -2.04] 74449.5 432: [-6.12 -10.2 -2.04] 64281.8 432: [-2.04 -10.2 -2.04] 49076.9 432: [2.04 -10.2 -2.04] 36415.9 432: [6.12 -10.2 -2.04] 29734.1 432: [10.2 -10.2 -2.04] 28403 432: [-10.2 -6.12 -2.04] 64832.7 432: [-6.12 -6.12 -2.04] 53317.9 432: [-2.04 -6.12 -2.04] 37043.2 432: [2.04 -6.12 -2.04] 22959.6 432: [6.12 -6.12 -2.04] 14296.9 432: [10.2 -6.12 -2.04] 11566.7 432: [-10.2 -2.04 -2.04] 57654.9 432: [-6.12 -2.04 -2.04] 45747.8 432: [-2.04 -2.04 -2.04] 29445.1 432: [2.04 -2.04 -2.04] 15101.1 432: [6.12 -2.04 -2.04] 5691.26 * 432: [10.2 -2.04 -2.04] 2314.87 * 432: [-10.2 2.04 -2.04] 57639 432: [-6.12 2.04 -2.04] 45737.4 432: [-2.04 2.04 -2.04] 29439 432: [2.04 2.04 -2.04] 15097.8 432: [6.12 2.04 -2.04] 5689.94 432: [10.2 2.04 -2.04] 2314.41 * 432: [-10.2 6.12 -2.04] 64797.7 432: [-6.12 6.12 -2.04] 53306.2 432: [-2.04 6.12 -2.04] 37040 432: [2.04 6.12 -2.04] 22956.8 432: [6.12 6.12 -2.04] 14296.1 432: [10.2 6.12 -2.04] 11567.5 432: [-10.2 10.2 -2.04] 74459.9 432: [-6.12 10.2 -2.04] 64378.9 432: [-2.04 10.2 -2.04] 49191.7 432: [2.04 10.2 -2.04] 36520.8 432: [6.12 10.2 -2.04] 29846.4 432: [10.2 10.2 -2.04] 28526.5 432: [-10.2 -10.2 2.04] 74429.6 432: [-6.12 -10.2 2.04] 64267.5 432: [-2.04 -10.2 2.04] 49066.9 432: [2.04 -10.2 2.04] 36408.4 432: [6.12 -10.2 2.04] 29728.1 432: [10.2 -10.2 2.04] 28397.6 432: [-10.2 -6.12 2.04] 64815.2 432: [-6.12 -6.12 2.04] 53306.1 432: [-2.04 -6.12 2.04] 37035.8 432: [2.04 -6.12 2.04] 22954.9 432: [6.12 -6.12 2.04] 14294.1 432: [10.2 -6.12 2.04] 11564.7 432: [-10.2 -2.04 2.04] 57639 432: [-6.12 -2.04 2.04] 45737.4 432: [-2.04 -2.04 2.04] 29439 432: [2.04 -2.04 2.04] 15097.8 432: [6.12 -2.04 2.04] 5689.94 432: [10.2 -2.04 2.04] 2314.41 432: [-10.2 2.04 2.04] 57623.1 432: [-6.12 2.04 2.04] 45727.1 432: [-2.04 2.04 2.04] 29432.9 432: [2.04 2.04 2.04] 15094.5 432: [6.12 2.04 2.04] 5688.65 432: [10.2 2.04 2.04] 2313.97 * 432: [-10.2 6.12 2.04] 64780.4 432: [-6.12 6.12 2.04] 53294.5 432: [-2.04 6.12 2.04] 37032.7 432: [2.04 6.12 2.04] 22952.3 432: [6.12 6.12 2.04] 14293.5 432: [10.2 6.12 2.04] 11565.7 432: [-10.2 10.2 2.04] 74440.3 432: [-6.12 10.2 2.04] 64365 432: [-2.04 10.2 2.04] 49182.1 432: [2.04 10.2 2.04] 36513.6 432: [6.12 10.2 2.04] 29840.9 432: [10.2 10.2 2.04] 28521.4 432: [-10.2 -10.2 6.12] 82364.6 432: [-6.12 -10.2 6.12] 72609.5 432: [-2.04 -10.2 6.12] 57395.9 432: [2.04 -10.2 6.12] 44976.1 432: [6.12 -10.2 6.12] 39078.9 432: [10.2 -10.2 6.12] 38440.1 432: [-10.2 -6.12 6.12] 72412.2 432: [-6.12 -6.12 6.12] 61325.8 432: [-2.04 -6.12 6.12] 45074.1 432: [2.04 -6.12 6.12] 31250.7 432: [6.12 -6.12 6.12] 23367.9 432: [10.2 -6.12 6.12] 21317 432: [-10.2 -2.04 6.12] 64797.7 432: [-6.12 -2.04 6.12] 53306.2 432: [-2.04 -2.04 6.12] 37040 432: [2.04 -2.04 6.12] 22956.8 432: [6.12 -2.04 6.12] 14296.1 432: [10.2 -2.04 6.12] 11567.5 432: [-10.2 2.04 6.12] 64780.3 432: [-6.12 2.04 6.12] 53294.5 432: [-2.04 2.04 6.12] 37032.7 432: [2.04 2.04 6.12] 22952.3 432: [6.12 2.04 6.12] 14293.5 432: [10.2 2.04 6.12] 11565.7 432: [-10.2 6.12 6.12] 72376.5 432: [-6.12 6.12 6.12] 61315 432: [-2.04 6.12 6.12] 45072.4 432: [2.04 6.12 6.12] 31249.7 432: [6.12 6.12 6.12] 23369.2 432: [10.2 6.12 6.12] 21320.2 432: [-10.2 10.2 6.12] 82385 432: [-6.12 10.2 6.12] 72724.1 432: [-2.04 10.2 6.12] 57530.6 432: [2.04 10.2 6.12] 45101.8 432: [6.12 10.2 6.12] 39214.6 432: [10.2 10.2 6.12] 38589.1 432: [-10.2 -10.2 10.2] 92397.6 432: [-6.12 -10.2 10.2] 83916.7 432: [-2.04 -10.2 10.2] 69619.2 432: [2.04 -10.2 10.2] 58464.4 432: [6.12 -10.2 10.2] 54439.9 432: [10.2 -10.2 10.2] 55157.8 432: [-10.2 -6.12 10.2] 82423.5 432: [-6.12 -6.12 10.2] 72736.1 432: [-2.04 -6.12 10.2] 57532.8 432: [2.04 -6.12 10.2] 45103.1 432: [6.12 -6.12 10.2] 39213.4 432: [10.2 -6.12 10.2] 38586 432: [-10.2 -2.04 10.2] 74459.9 432: [-6.12 -2.04 10.2] 64378.9 432: [-2.04 -2.04 10.2] 49191.7 432: [2.04 -2.04 10.2] 36520.8 432: [6.12 -2.04 10.2] 29846.4 432: [10.2 -2.04 10.2] 28526.5 432: [-10.2 2.04 10.2] 74440.3 432: [-6.12 2.04 10.2] 64365 432: [-2.04 2.04 10.2] 49182.1 432: [2.04 2.04 10.2] 36513.6 432: [6.12 2.04 10.2] 29840.9 432: [10.2 2.04 10.2] 28521.4 432: [-10.2 6.12 10.2] 82385 432: [-6.12 6.12 10.2] 72724.1 432: [-2.04 6.12 10.2] 57530.6 432: [2.04 6.12 10.2] 45101.8 432: [6.12 6.12 10.2] 39214.6 432: [10.2 6.12 10.2] 38589.1 432: [-10.2 10.2 10.2] 92421.5 432: [-6.12 10.2 10.2] 84042.5 432: [-2.04 10.2 10.2] 69768.6 432: [2.04 10.2 10.2] 58606.7 432: [6.12 10.2 10.2] 54595.3 432: [10.2 10.2 10.2] 55328.8 432: [2] xf_out->m_type = 1, xf_in->m_type = 0 432: Warping... 432: plm_warp_itk: xform_to_itk_vf 432: plm_warp_itk: convert_to_itk 432: plm_warp_itk: warping... 432: Saving image... 432: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha 432: Load: 0.018641 432: Run: 0.038924 432: Save: 0.0032928 432: Total: 0.0608578 432: Finished! 432: 432: STDERR: 432: Not an error 140/571 Test #432: plm-reg-autores-a ..................... Passed 0.12 sec test 440 Start 440: plm-compose-a 440: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 440: Test timeout computed to be: 1500 440: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 440: PARMS is compose;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha 440: EXPECTED_ERRNO is 423: RETVAL: 0 423: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 423: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 423: Launching registration worker thread 423: Inside registration worker thread 423: Doing registration stage 423: [1] xf_in->m_type = 0, xf_out->m_type = 0 423: RESAMPLE 1 1: (1 1 1), (1 1 1) 423: RESAMPLE 1 1: (1 1 1), (1 1 1) 423: volume_calc_grad complete. 423: Computing grid search extent. 423: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 423: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 423: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 423: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 423: [0 0 0] 18945.9 * 423: Global grid search 423: [-10 -10 -10] 109949 423: [-6 -10 -10] 96800 423: [-2 -10 -10] 79011.9 423: [2 -10 -10] 66244.1 423: [6 -10 -10] 61932.6 423: [10 -10 -10] 63642.7 423: [-10 -6 -10] 95633.9 423: [-6 -6 -10] 81703.4 423: [-2 -6 -10] 63642.4 423: [2 -6 -10] 49838.6 423: [6 -6 -10] 43366.8 423: [10 -6 -10] 43154 423: [-10 -2 -10] 84842.6 423: [-6 -2 -10] 71049.9 423: [-2 -2 -10] 53542.3 423: [2 -2 -10] 39751 423: [6 -2 -10] 32450.7 423: [10 -2 -10] 31286.8 423: [-10 2 -10] 84829.9 423: [-6 2 -10] 71041.2 423: [-2 2 -10] 53536.6 423: [2 2 -10] 39746.7 423: [6 2 -10] 32446.9 423: [10 2 -10] 31283.5 423: [-10 6 -10] 95561.4 423: [-6 6 -10] 81658.4 423: [-2 6 -10] 63613.3 423: [2 6 -10] 49813.8 423: [6 6 -10] 43342.5 423: [10 6 -10] 43131.5 423: [-10 10 -10] 109668 423: [-6 10 -10] 96633.8 423: [-2 10 -10] 78907 423: [2 10 -10] 66152.1 423: [6 10 -10] 61839.3 423: [10 10 -10] 63556.7 423: [-10 -10 -6] 95633.9 423: [-6 -10 -6] 81703.4 423: [-2 -10 -6] 63642.4 423: [2 -10 -6] 49838.6 423: [6 -10 -6] 43366.8 423: [10 -10 -6] 43154 423: [-10 -6 -6] 82028.8 423: [-6 -6 -6] 67247.9 423: [-2 -6 -6] 48818.3 423: [2 -6 -6] 33916.9 423: [6 -6 -6] 25278 423: [10 -6 -6] 23165.8 423: [-10 -2 -6] 72112.1 423: [-6 -2 -6] 57467.9 423: [-2 -2 -6] 39558.4 423: [2 -2 -6] 24681.2 423: [6 -2 -6] 15293.3 * 423: [10 -2 -6] 12314.7 * 423: [-10 2 -6] 72100.9 423: [-6 2 -6] 57460.6 423: [-2 2 -6] 39554 423: [2 2 -6] 24678.2 423: [6 2 -6] 15291.1 423: [10 2 -6] 12313 * 423: [-10 6 -6] 81963.5 423: [-6 6 -6] 67208.4 423: [-2 6 -6] 48793.6 423: [2 6 -6] 33896.7 423: [6 6 -6] 25258.7 423: [10 6 -6] 23148.6 423: [-10 10 -6] 95379.4 423: [-6 10 -6] 81554.8 423: [-2 10 -6] 63550.9 423: [2 10 -6] 49759.6 423: [6 10 -6] 43287.7 423: [10 10 -6] 43082.4 423: [-10 -10 -2] 84842.6 423: [-6 -10 -2] 71049.9 423: [-2 -10 -2] 53542.3 423: [2 -10 -2] 39751 423: [6 -10 -2] 32450.7 423: [10 -10 -2] 31286.8 423: [-10 -6 -2] 72112.1 423: [-6 -6 -2] 57467.9 423: [-2 -6 -2] 39558.4 423: [2 -6 -2] 24681.2 423: [6 -6 -2] 15293.3 423: [10 -6 -2] 12314.7 423: [-10 -2 -2] 63010.9 423: [-6 -2 -2] 48498.1 423: [-2 -2 -2] 31072.4 423: [2 -2 -2] 16224.1 423: [6 -2 -2] 6155.79 * 423: [10 -2 -2] 2386.22 * 423: [-10 2 -2] 63000.9 423: [-6 2 -2] 48491.8 423: [-2 2 -2] 31068.8 423: [2 2 -2] 16221.9 423: [6 2 -2] 6154.44 423: [10 2 -2] 2385.44 * 423: [-10 6 -2] 72052.8 423: [-6 6 -2] 57432.4 423: [-2 6 -2] 39536.8 423: [2 6 -2] 24663.8 423: [6 6 -2] 15277.1 423: [10 6 -2] 12300.5 423: [-10 10 -2] 84610.1 423: [-6 10 -2] 70915.1 423: [-2 10 -2] 53460.4 423: [2 10 -2] 39681 423: [6 10 -2] 32381 423: [10 10 -2] 31224.4 423: [-10 -10 2] 84829.9 423: [-6 -10 2] 71041.2 423: [-2 -10 2] 53536.6 423: [2 -10 2] 39746.7 423: [6 -10 2] 32446.9 423: [10 -10 2] 31283.5 423: [-10 -6 2] 72100.9 423: [-6 -6 2] 57460.6 423: [-2 -6 2] 39554 423: [2 -6 2] 24678.2 423: [6 -6 2] 15291.1 423: [10 -6 2] 12313 423: [-10 -2 2] 63000.9 423: [-6 -2 2] 48491.8 423: [-2 -2 2] 31068.8 423: [2 -2 2] 16221.9 423: [6 -2 2] 6154.44 423: [10 -2 2] 2385.44 423: [-10 2 2] 62990.9 423: [-6 2 2] 48485.5 423: [-2 2 2] 31065.2 423: [2 2 2] 16219.7 423: [6 2 2] 6153.1 423: [10 2 2] 2384.66 * 423: [-10 6 2] 72041.7 423: [-6 6 2] 57425.2 423: [-2 6 2] 39532.4 423: [2 6 2] 24660.8 423: [6 6 2] 15274.9 423: [10 6 2] 12298.9 423: [-10 10 2] 84597.7 423: [-6 10 2] 70906.7 423: [-2 10 2] 53454.9 423: [2 10 2] 39676.9 423: [6 10 2] 32377.5 423: [10 10 2] 31221.4 423: [-10 -10 6] 95561.4 423: [-6 -10 6] 81658.4 423: [-2 -10 6] 63613.3 423: [2 -10 6] 49813.8 423: [6 -10 6] 43342.5 423: [10 -10 6] 43131.5 423: [-10 -6 6] 81963.5 423: [-6 -6 6] 67208.4 423: [-2 -6 6] 48793.6 423: [2 -6 6] 33896.7 423: [6 -6 6] 25258.7 423: [10 -6 6] 23148.6 423: [-10 -2 6] 72052.8 423: [-6 -2 6] 57432.4 423: [-2 -2 6] 39536.8 423: [2 -2 6] 24663.8 423: [6 -2 6] 15277.1 423: [10 -2 6] 12300.5 423: [-10 2 6] 72041.7 423: [-6 2 6] 57425.2 423: [-2 2 6] 39532.4 423: [2 2 6] 24660.8 423: [6 2 6] 15274.9 423: [10 2 6] 12298.9 423: [-10 6 6] 81898.9 423: [-6 6 6] 67169.4 423: [-2 6 6] 48769.5 423: [2 6 6] 33876.9 423: [6 6 6] 25240 423: [10 6 6] 23132 423: [-10 10 6] 95309.5 423: [-6 10 6] 81512.3 423: [-2 10 6] 63524.1 423: [2 10 6] 49737.2 423: [6 10 6] 43266 423: [10 10 6] 43062.8 423: [-10 -10 10] 109668 423: [-6 -10 10] 96633.8 423: [-2 -10 10] 78907 423: [2 -10 10] 66152.1 423: [6 -10 10] 61839.3 423: [10 -10 10] 63556.7 423: [-10 -6 10] 95379.4 423: [-6 -6 10] 81554.8 423: [-2 -6 10] 63550.9 423: [2 -6 10] 49759.6 423: [6 -6 10] 43287.7 423: [10 -6 10] 43082.4 423: [-10 -2 10] 84610.1 423: [-6 -2 10] 70915.1 423: [-2 -2 10] 53460.4 423: [2 -2 10] 39681 423: [6 -2 10] 32381 423: [10 -2 10] 31224.4 423: [-10 2 10] 84597.7 423: [-6 2 10] 70906.7 423: [-2 2 10] 53454.9 423: [2 2 10] 39676.9 423: [6 2 10] 32377.5 423: [10 2 10] 31221.4 423: [-10 6 10] 95309.5 423: [-6 6 10] 81512.3 423: [-2 6 10] 63524.1 423: [2 6 10] 49737.2 423: [6 6 10] 43266 423: [10 6 10] 43062.8 423: [-10 10 10] 109399 423: [-6 10 10] 96478.4 423: [-2 10 10] 78812.5 423: [2 10 10] 66070.4 423: [6 10 10] 61757.4 423: [10 10 10] 63483 423: [2] xf_out->m_type = 1, xf_in->m_type = 0 423: [1] xf_in->m_type = 1, xf_out->m_type = 0 423: RESAMPLE 1 1: (1 1 1), (1 1 1) 423: RESAMPLE 1 1: (1 1 1), (1 1 1) 423: volume_calc_grad complete. 423: Computing grid search extent. 423: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 423: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 423: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 423: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 423: [10 2 2] 2384.66 * 423: Local grid search 423: [6.4 -1.6 -1.6] 4439.65 423: [8.8 -1.6 -1.6] 1771.35 * 423: [11.2 -1.6 -1.6] 1856.67 423: [13.6 -1.6 -1.6] 4787.36 423: [6.4 0.8 -1.6] 3954.1 423: [8.8 0.8 -1.6] 1244.73 * 423: [11.2 0.8 -1.6] 1300.61 423: [13.6 0.8 -1.6] 4226.79 423: [6.4 3.2 -1.6] 6520.93 423: [8.8 3.2 -1.6] 3949.58 423: [11.2 3.2 -1.6] 4155.43 423: [13.6 3.2 -1.6] 7178.92 423: [6.4 5.6 -1.6] 12337.8 423: [8.8 5.6 -1.6] 10089.9 423: [11.2 5.6 -1.6] 10636.9 423: [13.6 5.6 -1.6] 13872 423: [6.4 -1.6 0.8] 3954.1 423: [8.8 -1.6 0.8] 1244.73 * 423: [11.2 -1.6 0.8] 1300.61 423: [13.6 -1.6 0.8] 4226.79 423: [6.4 0.8 0.8] 3466.53 423: [8.8 0.8 0.8] 715.907 * 423: [11.2 0.8 0.8] 742.224 423: [13.6 0.8 0.8] 3663.89 423: [6.4 3.2 0.8] 6031.02 423: [8.8 3.2 0.8] 3418.24 423: [11.2 3.2 0.8] 3594.38 423: [13.6 3.2 0.8] 6613.31 423: [6.4 5.6 0.8] 11844.3 423: [8.8 5.6 0.8] 9554.72 423: [11.2 5.6 0.8] 10071.8 423: [13.6 5.6 0.8] 13302.2 423: [6.4 -1.6 3.2] 6520.93 423: [8.8 -1.6 3.2] 3949.58 423: [11.2 -1.6 3.2] 4155.43 423: [13.6 -1.6 3.2] 7178.92 423: [6.4 0.8 3.2] 6031.02 423: [8.8 0.8 3.2] 3418.24 423: [11.2 0.8 3.2] 3594.38 423: [13.6 0.8 3.2] 6613.31 423: [6.4 3.2 3.2] 8673.76 423: [8.8 3.2 3.2] 6203.3 423: [11.2 3.2 3.2] 6533.85 423: [13.6 3.2 3.2] 9652.77 423: [6.4 5.6 3.2] 14655.7 423: [8.8 5.6 3.2] 12518.1 423: [11.2 5.6 3.2] 13199.5 423: [13.6 5.6 3.2] 16535.7 423: [6.4 -1.6 5.6] 12337.8 423: [8.8 -1.6 5.6] 10089.9 423: [11.2 -1.6 5.6] 10636.9 423: [13.6 -1.6 5.6] 13872 423: [6.4 0.8 5.6] 11844.3 423: [8.8 0.8 5.6] 9554.72 423: [11.2 0.8 5.6] 10071.8 423: [13.6 0.8 5.6] 13302.2 423: [6.4 3.2 5.6] 14655.7 423: [8.8 3.2 5.6] 12518.1 423: [11.2 3.2 5.6] 13199.5 423: [13.6 3.2 5.6] 16535.7 423: [6.4 5.6 5.6] 20999.9 423: [8.8 5.6 5.6] 19216 423: [11.2 5.6 5.6] 20269.6 423: [13.6 5.6 5.6] 23835.8 423: [2] xf_out->m_type = 1, xf_in->m_type = 1 423: ** Registration worker thread finished. 423: Warping... 423: plm_warp_itk: xform_to_itk_vf 423: plm_warp_itk: convert_to_itk 423: plm_warp_itk: warping... 423: Saving image... 423: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha 423: Load: 0.038815 423: Run: 0.752098 423: Save: 0.00330186 423: Total: 0.794215 423: Finished! 423: 423: STDERR: 423: Not an error 141/571 Test #423: plm-reg-trans-a ....................... Passed 0.91 sec test 444 Start 444: plm-compose-b 444: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 444: Test timeout computed to be: 1500 444: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 444: PARMS is compose;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha 444: EXPECTED_ERRNO is 440: RETVAL: 0 440: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha 440: Finished! 440: 440: STDERR: 440: Not an error 142/571 Test #440: plm-compose-a ......................... Passed 0.06 sec test 448 Start 448: plm-compose-c 448: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 448: Test timeout computed to be: 1500 448: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 448: PARMS is compose;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha 448: EXPECTED_ERRNO is 444: RETVAL: 0 444: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha 444: Finished! 444: 444: STDERR: 444: Not an error 143/571 Test #444: plm-compose-b ......................... Passed 0.07 sec test 452 Start 452: plm-resample-a 452: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2" "-P" "/<>/cmake/RUN_CTEST.cmake" 452: Test timeout computed to be: 1500 452: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 452: PARMS is resample;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2 452: EXPECTED_ERRNO is 435: RETVAL: 0 435: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 435: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 435: Launching registration worker thread 435: Inside registration worker thread 435: Doing registration stage 435: [1] xf_in->m_type = 0, xf_out->m_type = 0 435: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) 435: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) 435: volume_calc_grad complete. 435: Computing grid search extent. 435: Dimension 0, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) 435: Dimension 1, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) 435: Dimension 2, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) 435: Native grid search extent: (-10.2493, 10.2493), (-10.2493, 10.2493), (-10.2493, 10.2493) 435: [0 0 0] 17568.3 * 435: Global grid search 435: [-10.2493 -10.2493 -10.2493] 102040 435: [-6.14958 -10.2493 -10.2493] 87035.1 435: [-2.04986 -10.2493 -10.2493] 73504.3 435: [2.04986 -10.2493 -10.2493] 61973.2 435: [6.14958 -10.2493 -10.2493] 57083.1 435: [10.2493 -10.2493 -10.2493] 60324.8 435: [-10.2493 -6.14958 -10.2493] 86358.6 435: [-6.14958 -6.14958 -10.2493] 71329.7 435: [-2.04986 -6.14958 -10.2493] 57402.6 435: [2.04986 -6.14958 -10.2493] 45155 435: [6.14958 -6.14958 -10.2493] 38807.6 435: [10.2493 -6.14958 -10.2493] 39786.3 435: [-10.2493 -2.04986 -10.2493] 79223.6 435: [-6.14958 -2.04986 -10.2493] 64102 435: [-2.04986 -2.04986 -10.2493] 49890.5 435: [2.04986 -2.04986 -10.2493] 37200.4 435: [6.14958 -2.04986 -10.2493] 30089.3 435: [10.2493 -2.04986 -10.2493] 29962.9 435: [-10.2493 2.04986 -10.2493] 79216.3 435: [-6.14958 2.04986 -10.2493] 64097.4 435: [-2.04986 2.04986 -10.2493] 49887.5 435: [2.04986 2.04986 -10.2493] 37198.2 435: [6.14958 2.04986 -10.2493] 30087.7 435: [10.2493 2.04986 -10.2493] 29961.4 435: [-10.2493 6.14958 -10.2493] 86370.3 435: [-6.14958 6.14958 -10.2493] 71349.9 435: [-2.04986 6.14958 -10.2493] 57424.9 435: [2.04986 6.14958 -10.2493] 45174.8 435: [6.14958 6.14958 -10.2493] 38826.9 435: [10.2493 6.14958 -10.2493] 39808.1 435: [-10.2493 10.2493 -10.2493] 101908 435: [-6.14958 10.2493 -10.2493] 86978.3 435: [-2.04986 10.2493 -10.2493] 73484.1 435: [2.04986 10.2493 -10.2493] 61959.1 435: [6.14958 10.2493 -10.2493] 57074.3 435: [10.2493 10.2493 -10.2493] 60322.2 435: [-10.2493 -10.2493 -6.14958] 86358.6 435: [-6.14958 -10.2493 -6.14958] 71329.7 435: [-2.04986 -10.2493 -6.14958] 57402.6 435: [2.04986 -10.2493 -6.14958] 45155 435: [6.14958 -10.2493 -6.14958] 38807.6 435: [10.2493 -10.2493 -6.14958] 39786.3 435: [-10.2493 -6.14958 -6.14958] 72037.7 435: [-6.14958 -6.14958 -6.14958] 56910.4 435: [-2.04986 -6.14958 -6.14958] 42538.4 435: [2.04986 -6.14958 -6.14958] 29552 435: [6.14958 -6.14958 -6.14958] 21798.9 435: [10.2493 -6.14958 -6.14958] 20651.8 435: [-10.2493 -2.04986 -6.14958] 65471 435: [-6.14958 -2.04986 -6.14958] 50210.2 435: [-2.04986 -2.04986 -6.14958] 35524.7 435: [2.04986 -2.04986 -6.14958] 22079 435: [6.14958 -2.04986 -6.14958] 13577.1 * 435: [10.2493 -2.04986 -6.14958] 11376 * 435: [-10.2493 2.04986 -6.14958] 65464.7 435: [-6.14958 2.04986 -6.14958] 50206.4 435: [-2.04986 2.04986 -6.14958] 35522.4 435: [2.04986 2.04986 -6.14958] 22077.6 435: [6.14958 2.04986 -6.14958] 13576.2 435: [10.2493 2.04986 -6.14958] 11375.4 * 435: [-10.2493 6.14958 -6.14958] 72046.3 435: [-6.14958 6.14958 -6.14958] 56926.2 435: [-2.04986 6.14958 -6.14958] 42555.4 435: [2.04986 6.14958 -6.14958] 29566.2 435: [6.14958 6.14958 -6.14958] 21812 435: [10.2493 6.14958 -6.14958] 20666.5 435: [-10.2493 10.2493 -6.14958] 86238.7 435: [-6.14958 10.2493 -6.14958] 71277.5 435: [-2.04986 10.2493 -6.14958] 57383.1 435: [2.04986 10.2493 -6.14958] 45141 435: [6.14958 10.2493 -6.14958] 38798.2 435: [10.2493 10.2493 -6.14958] 39782.4 435: [-10.2493 -10.2493 -2.04986] 79223.6 435: [-6.14958 -10.2493 -2.04986] 64102 435: [-2.04986 -10.2493 -2.04986] 49890.5 435: [2.04986 -10.2493 -2.04986] 37200.4 435: [6.14958 -10.2493 -2.04986] 30089.3 435: [10.2493 -10.2493 -2.04986] 29962.9 435: [-10.2493 -6.14958 -2.04986] 65471 435: [-6.14958 -6.14958 -2.04986] 50210.2 435: [-2.04986 -6.14958 -2.04986] 35524.7 435: [2.04986 -6.14958 -2.04986] 22079 435: [6.14958 -6.14958 -2.04986] 13577.1 435: [10.2493 -6.14958 -2.04986] 11376 435: [-10.2493 -2.04986 -2.04986] 59138.3 435: [-6.14958 -2.04986 -2.04986] 43721.4 435: [-2.04986 -2.04986 -2.04986] 28705.1 435: [2.04986 -2.04986 -2.04986] 14788.4 435: [6.14958 -2.04986 -2.04986] 5539.07 * 435: [10.2493 -2.04986 -2.04986] 2301.37 * 435: [-10.2493 2.04986 -2.04986] 59132.6 435: [-6.14958 2.04986 -2.04986] 43718 435: [-2.04986 2.04986 -2.04986] 28703.3 435: [2.04986 2.04986 -2.04986] 14787.4 435: [6.14958 2.04986 -2.04986] 5538.67 435: [10.2493 2.04986 -2.04986] 2301.27 * 435: [-10.2493 6.14958 -2.04986] 65478.6 435: [-6.14958 6.14958 -2.04986] 50224.3 435: [-2.04986 6.14958 -2.04986] 35539.7 435: [2.04986 6.14958 -2.04986] 22091 435: [6.14958 6.14958 -2.04986] 13587.7 435: [10.2493 6.14958 -2.04986] 11387.8 435: [-10.2493 10.2493 -2.04986] 79111.5 435: [-6.14958 10.2493 -2.04986] 64054.3 435: [-2.04986 10.2493 -2.04986] 49873.8 435: [2.04986 10.2493 -2.04986] 37188.9 435: [6.14958 10.2493 -2.04986] 30082.5 435: [10.2493 10.2493 -2.04986] 29961.4 435: [-10.2493 -10.2493 2.04986] 79216.3 435: [-6.14958 -10.2493 2.04986] 64097.4 435: [-2.04986 -10.2493 2.04986] 49887.5 435: [2.04986 -10.2493 2.04986] 37198.2 435: [6.14958 -10.2493 2.04986] 30087.7 435: [10.2493 -10.2493 2.04986] 29961.4 435: [-10.2493 -6.14958 2.04986] 65464.7 435: [-6.14958 -6.14958 2.04986] 50206.4 435: [-2.04986 -6.14958 2.04986] 35522.4 435: [2.04986 -6.14958 2.04986] 22077.6 435: [6.14958 -6.14958 2.04986] 13576.2 435: [10.2493 -6.14958 2.04986] 11375.4 435: [-10.2493 -2.04986 2.04986] 59132.6 435: [-6.14958 -2.04986 2.04986] 43718 435: [-2.04986 -2.04986 2.04986] 28703.3 435: [2.04986 -2.04986 2.04986] 14787.4 435: [6.14958 -2.04986 2.04986] 5538.67 435: [10.2493 -2.04986 2.04986] 2301.27 * 435: [-10.2493 2.04986 2.04986] 59126.8 435: [-6.14958 2.04986 2.04986] 43714.7 435: [-2.04986 2.04986 2.04986] 28701.5 435: [2.04986 2.04986 2.04986] 14786.4 435: [6.14958 2.04986 2.04986] 5538.27 435: [10.2493 2.04986 2.04986] 2301.18 * 435: [-10.2493 6.14958 2.04986] 65472.3 435: [-6.14958 6.14958 2.04986] 50220.5 435: [-2.04986 6.14958 2.04986] 35537.5 435: [2.04986 6.14958 2.04986] 22089.6 435: [6.14958 6.14958 2.04986] 13586.9 435: [10.2493 6.14958 2.04986] 11387.2 435: [-10.2493 10.2493 2.04986] 79104.4 435: [-6.14958 10.2493 2.04986] 64049.8 435: [-2.04986 10.2493 2.04986] 49870.9 435: [2.04986 10.2493 2.04986] 37186.9 435: [6.14958 10.2493 2.04986] 30080.9 435: [10.2493 10.2493 2.04986] 29960.1 435: [-10.2493 -10.2493 6.14958] 86370.3 435: [-6.14958 -10.2493 6.14958] 71349.9 435: [-2.04986 -10.2493 6.14958] 57424.9 435: [2.04986 -10.2493 6.14958] 45174.8 435: [6.14958 -10.2493 6.14958] 38826.9 435: [10.2493 -10.2493 6.14958] 39808.1 435: [-10.2493 -6.14958 6.14958] 72046.3 435: [-6.14958 -6.14958 6.14958] 56926.2 435: [-2.04986 -6.14958 6.14958] 42555.4 435: [2.04986 -6.14958 6.14958] 29566.2 435: [6.14958 -6.14958 6.14958] 21812 435: [10.2493 -6.14958 6.14958] 20666.5 435: [-10.2493 -2.04986 6.14958] 65478.6 435: [-6.14958 -2.04986 6.14958] 50224.3 435: [-2.04986 -2.04986 6.14958] 35539.7 435: [2.04986 -2.04986 6.14958] 22091 435: [6.14958 -2.04986 6.14958] 13587.7 435: [10.2493 -2.04986 6.14958] 11387.8 435: [-10.2493 2.04986 6.14958] 65472.4 435: [-6.14958 2.04986 6.14958] 50220.5 435: [-2.04986 2.04986 6.14958] 35537.5 435: [2.04986 2.04986 6.14958] 22089.6 435: [6.14958 2.04986 6.14958] 13586.9 435: [10.2493 2.04986 6.14958] 11387.2 435: [-10.2493 6.14958 6.14958] 72055.1 435: [-6.14958 6.14958 6.14958] 56942.1 435: [-2.04986 6.14958 6.14958] 42572.7 435: [2.04986 6.14958 6.14958] 29580.5 435: [6.14958 6.14958 6.14958] 21825.4 435: [10.2493 6.14958 6.14958] 20681.4 435: [-10.2493 10.2493 6.14958] 86251.4 435: [-6.14958 10.2493 6.14958] 71298.8 435: [-2.04986 10.2493 6.14958] 57406.5 435: [2.04986 10.2493 6.14958] 45161.9 435: [6.14958 10.2493 6.14958] 38818.7 435: [10.2493 10.2493 6.14958] 39805.5 435: [-10.2493 -10.2493 10.2493] 101908 435: [-6.14958 -10.2493 10.2493] 86978.3 435: [-2.04986 -10.2493 10.2493] 73484.1 435: [2.04986 -10.2493 10.2493] 61959.1 435: [6.14958 -10.2493 10.2493] 57074.3 435: [10.2493 -10.2493 10.2493] 60322.2 435: [-10.2493 -6.14958 10.2493] 86238.7 435: [-6.14958 -6.14958 10.2493] 71277.5 435: [-2.04986 -6.14958 10.2493] 57383.1 435: [2.04986 -6.14958 10.2493] 45141 435: [6.14958 -6.14958 10.2493] 38798.2 435: [10.2493 -6.14958 10.2493] 39782.4 435: [-10.2493 -2.04986 10.2493] 79111.5 435: [-6.14958 -2.04986 10.2493] 64054.3 435: [-2.04986 -2.04986 10.2493] 49873.8 435: [2.04986 -2.04986 10.2493] 37188.9 435: [6.14958 -2.04986 10.2493] 30082.5 435: [10.2493 -2.04986 10.2493] 29961.4 435: [-10.2493 2.04986 10.2493] 79104.4 435: [-6.14958 2.04986 10.2493] 64049.8 435: [-2.04986 2.04986 10.2493] 49870.9 435: [2.04986 2.04986 10.2493] 37186.9 435: [6.14958 2.04986 10.2493] 30081 435: [10.2493 2.04986 10.2493] 29960.1 435: [-10.2493 6.14958 10.2493] 86251.4 435: [-6.14958 6.14958 10.2493] 71298.8 435: [-2.04986 6.14958 10.2493] 57406.5 435: [2.04986 6.14958 10.2493] 45161.9 435: [6.14958 6.14958 10.2493] 38818.7 435: [10.2493 6.14958 10.2493] 39805.5 435: [-10.2493 10.2493 10.2493] 101782 435: [-6.14958 10.2493 10.2493] 86927.9 435: [-2.04986 10.2493 10.2493] 73469.9 435: [2.04986 10.2493 10.2493] 61951.1 435: [6.14958 10.2493 10.2493] 57072 435: [10.2493 10.2493 10.2493] 60327 435: [2] xf_out->m_type = 1, xf_in->m_type = 0 435: Warping... 435: plm_warp_itk: xform_to_itk_vf 435: plm_warp_itk: convert_to_itk 435: plm_warp_itk: warping... 435: Saving image... 435: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha 435: Load: 0.018641 435: Run: 0.0525999 435: Save: 0.00354195 435: Total: 0.0747828 435: Finished! 435: 435: STDERR: 435: Not an error 144/571 Test #435: plm-reg-autores-b ..................... Passed 0.13 sec test 455 Start 455: plm-resample-b 455: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/<>/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 455: Test timeout computed to be: 1500 455: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 455: PARMS is resample;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/<>/obj-x86_64-linux-gnu/Testing/black-1.mha 455: EXPECTED_ERRNO is 452: RETVAL: 0 452: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha 452: 452: STDERR: 452: Not an error 145/571 Test #452: plm-resample-a ........................ Passed 0.07 sec test 458 Start 458: plm-resample-c 458: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/<>/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 458: Test timeout computed to be: 1500 458: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 458: PARMS is resample;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/<>/obj-x86_64-linux-gnu/Testing/black-1.mha 458: EXPECTED_ERRNO is 448: RETVAL: 0 448: STDOUT: bspline_xform_initialize 448: rdims = (2,2,2) 448: vox_per_rgn = (22,22,22) 448: cdims = (5 5 5) 448: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha 448: Finished! 448: 448: STDERR: 448: Not an error 146/571 Test #448: plm-compose-c ......................... Passed 0.10 sec test 461 Start 461: plm-scale-a 461: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 461: Test timeout computed to be: 1500 461: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 461: PARMS is scale;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha 461: EXPECTED_ERRNO is 455: RETVAL: 0 455: STDOUT: Time = 0.001310 seconds 455: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha 455: 455: STDERR: 455: Not an error 147/571 Test #455: plm-resample-b ........................ Passed 0.08 sec test 464 Start 464: plm-scale-vf-a 464: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 464: Test timeout computed to be: 1500 464: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 464: PARMS is scale;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 464: EXPECTED_ERRNO is 458: RETVAL: 0 458: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha 458: 458: STDERR: 458: Not an error 148/571 Test #458: plm-resample-c ........................ Passed 0.09 sec test 470 Start 470: plm-thumbnail-a 470: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2" "-P" "/<>/cmake/RUN_CTEST.cmake" 470: Test timeout computed to be: 1500 470: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 470: PARMS is thumbnail;--input;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2 470: EXPECTED_ERRNO is 461: RETVAL: 0 461: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd 461: 461: STDERR: 461: Not an error 149/571 Test #461: plm-scale-a ........................... Passed 0.10 sec test 473 Start 473: plm-thumbnail-b 473: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2" "-P" "/<>/cmake/RUN_CTEST.cmake" 473: Test timeout computed to be: 1500 473: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 473: PARMS is thumbnail;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2 473: EXPECTED_ERRNO is 464: RETVAL: 0 464: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd 464: 464: STDERR: 464: Not an error 150/571 Test #464: plm-scale-vf-a ........................ Passed 0.11 sec test 476 Start 476: plm-thumbnail-c 476: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust" "-P" "/<>/cmake/RUN_CTEST.cmake" 476: Test timeout computed to be: 1500 476: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 476: PARMS is thumbnail;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust 476: EXPECTED_ERRNO is 470: RETVAL: 0 470: STDOUT: Time = 0.001182 seconds 470: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png 470: 470: STDERR: 470: Not an error 151/571 Test #470: plm-thumbnail-a ....................... Passed 0.15 sec test 479 Start 479: plm-intersect 479: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=intersect;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 479: Test timeout computed to be: 1500 479: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 479: PARMS is intersect;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 479: EXPECTED_ERRNO is 473: RETVAL: 0 473: STDOUT: Time = 0.000218 seconds 473: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png 473: 473: STDERR: 473: Not an error 152/571 Test #473: plm-thumbnail-b ....................... Passed 0.15 sec test 482 Start 482: plm-union 482: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=union;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-union.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 482: Test timeout computed to be: 1500 476: RETVAL: 0 476: STDOUT: Time = 0.000103 seconds 476: Auto-adjusting intensities... 476: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png 476: 476: STDERR: 476: Not an error 482: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 482: PARMS is union;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-union.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 482: EXPECTED_ERRNO is 153/571 Test #476: plm-thumbnail-c ....................... Passed 0.14 sec test 485 Start 485: plm-threshold-a 485: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888" "-P" "/<>/cmake/RUN_CTEST.cmake" 485: Test timeout computed to be: 1500 485: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 485: PARMS is threshold;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888 485: EXPECTED_ERRNO is 479: RETVAL: 0 479: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-intersect.mha 479: 479: STDERR: 479: Not an error 154/571 Test #479: plm-intersect ......................... Passed 0.09 sec test 488 Start 488: plm-threshold-b 488: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900" "-P" "/<>/cmake/RUN_CTEST.cmake" 488: Test timeout computed to be: 1500 488: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 488: PARMS is threshold;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900 488: EXPECTED_ERRNO is 482: RETVAL: 0 482: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-union.mha 482: 482: STDERR: 482: Not an error 485: RETVAL: 0 485: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha 485: 485: STDERR: 485: Not an error 155/571 Test #482: plm-union ............................. Passed 0.08 sec test 491 Start 491: plm-threshold-c 491: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888" "-P" "/<>/cmake/RUN_CTEST.cmake" 491: Test timeout computed to be: 1500 156/571 Test #485: plm-threshold-a ....................... Passed 0.07 sec test 497 Start 497: plm-warp-a 497: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 497: Test timeout computed to be: 1500 491: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 491: PARMS is threshold;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888 491: EXPECTED_ERRNO is 497: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 497: PARMS is warp;--algorithm;itk;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha 497: EXPECTED_ERRNO is 488: RETVAL: 0 488: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha 488: 488: STDERR: 488: Not an error 157/571 Test #488: plm-threshold-b ....................... Passed 0.08 sec test 500 Start 500: plm-warp-b 500: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0" "-P" "/<>/cmake/RUN_CTEST.cmake" 500: Test timeout computed to be: 1500 500: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 500: PARMS is warp;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0 500: EXPECTED_ERRNO is 491: RETVAL: 0 491: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha 491: 491: STDERR: 491: Not an error 158/571 Test #491: plm-threshold-c ....................... Passed 0.07 sec test 505 Start 505: plm-warp-c 505: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0" "-P" "/<>/cmake/RUN_CTEST.cmake" 505: Test timeout computed to be: 1500 505: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 505: PARMS is warp;--algorithm;itk;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0 505: EXPECTED_ERRNO is 497: RETVAL: 0 497: STDOUT: Loading xform (/<>/Testing/Data/xf-bspline-2.txt) 497: bspline_xform_initialize 497: rdims = (3,3,3) 497: vox_per_rgn = (15,15,15) 497: cdims = (6 6 6) 497: Setting PIH from XFORM 497: PIH is: 497: Origin = -25.0000 -25.0000 -25.0000 497: Size = 38 38 38 497: Spacing = 1.3158 1.3158 1.3158 497: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 497: Rt_study_warp: Warping m_img 497: plm_warp_itk: xform_to_itk_vf 497: plm_warp_itk: convert_to_itk 497: plm_warp_itk: warping... 497: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha) 497: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha 497: Rt_study_warp: Saving vf. 497: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha 497: Rt_study_warp: warp and save ss. 497: Finished! 497: 497: STDERR: 497: Not an error 159/571 Test #497: plm-warp-a ............................ Passed 0.12 sec test 508 Start 508: plm-warp-d 508: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0" "-P" "/<>/cmake/RUN_CTEST.cmake" 508: Test timeout computed to be: 1500 500: RETVAL: 0 500: STDOUT: Loading xform (/<>/Testing/Data/xf-bspline-2.txt) 500: bspline_xform_initialize 500: rdims = (3,3,3) 500: vox_per_rgn = (15,15,15) 500: cdims = (6 6 6) 500: Setting PIH from XFORM 500: PIH is: 500: Origin = -25.0000 -25.0000 -25.0000 500: Size = 38 38 38 500: Spacing = 1.3158 1.3158 1.3158 500: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 500: Rt_study_warp: Warping m_img 500: Running: plm_warp_native 500: Converting input image... 500: Converting xform... 500: bspline_xform_initialize 500: rdims = (3,3,3) 500: vox_per_rgn = (15,15,15) 500: cdims = (6 6 6) 500: Creating output vf... 500: Creating output volume... 500: Running native warper... 500: bspline_warp complete. 500: Back convert to original type... 500: > Convert vf to itk 500: > Conversion complete. 500: plm_warp_native is complete. 500: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha) 500: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha 500: Rt_study_warp: Saving vf. 500: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha 500: Rt_study_warp: warp and save ss. 500: Finished! 500: 500: STDERR: 500: Not an error 160/571 Test #500: plm-warp-b ............................ Passed 0.09 sec test 511 Start 511: plm-warp-f 511: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/Testing/Data/itk-affine-a.tfm;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf" "-P" "/<>/cmake/RUN_CTEST.cmake" 511: Test timeout computed to be: 1500 508: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 508: PARMS is warp;--xf;/<>/Testing/Data/xf-bspline-2.txt;--output-vf;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/<>/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0 508: EXPECTED_ERRNO is 511: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 511: PARMS is warp;--xf;/<>/Testing/Data/itk-affine-a.tfm;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf 511: EXPECTED_ERRNO is 505: RETVAL: 0 505: STDOUT: Loading xform (/<>/Testing/Data/xf-bspline-2.txt) 505: bspline_xform_initialize 505: rdims = (3,3,3) 505: vox_per_rgn = (15,15,15) 505: cdims = (6 6 6) 505: Setting PIH from XFORM 505: PIH is: 505: Origin = -25.0000 -25.0000 -25.0000 505: Size = 38 38 38 505: Spacing = 1.3158 1.3158 1.3158 505: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 505: Rt_study_warp: Warping m_img 505: plm_warp_itk: xform_to_itk_vf 505: plm_warp_itk: convert_to_itk 505: plm_warp_itk: warping... 505: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha) 505: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha 505: Rt_study_warp: Saving vf. 505: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha 505: Rt_study_warp: warp and save ss. 505: Finished! 505: 505: STDERR: 505: Not an error 161/571 Test #505: plm-warp-c ............................ Passed 0.13 sec test 514 Start 514: plm-warp-g 514: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/Testing/Data/itk-affine-a.tfm;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/<>/cmake/RUN_CTEST.cmake" 514: Test timeout computed to be: 1500 514: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 514: PARMS is warp;--xf;/<>/Testing/Data/itk-affine-a.tfm;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf 514: EXPECTED_ERRNO is 508: RETVAL: 0 508: STDOUT: Loading xform (/<>/Testing/Data/xf-bspline-2.txt) 508: bspline_xform_initialize 508: rdims = (3,3,3) 508: vox_per_rgn = (15,15,15) 508: cdims = (6 6 6) 508: Setting PIH from XFORM 508: PIH is: 508: Origin = -25.0000 -25.0000 -25.0000 508: Size = 38 38 38 508: Spacing = 1.3158 1.3158 1.3158 508: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 508: Rt_study_warp: Warping m_img 508: Running: plm_warp_native 508: Converting input image... 508: Converting xform... 508: bspline_xform_initialize 508: rdims = (3,3,3) 508: vox_per_rgn = (15,15,15) 508: cdims = (6 6 6) 508: Creating output vf... 508: Creating output volume... 508: Running native warper... 508: bspline_warp complete. 508: Back convert to original type... 508: > Convert vf to itk 508: > Conversion complete. 508: plm_warp_native is complete. 508: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha) 508: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha 508: Rt_study_warp: Saving vf. 508: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha 508: Rt_study_warp: warp and save ss. 508: Finished! 508: 508: STDERR: 508: Not an error 162/571 Test #508: plm-warp-d ............................ Passed 0.10 sec test 517 Start 517: plm-warp-h 517: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/Testing/Data/xf-translation-1.txt;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/<>/cmake/RUN_CTEST.cmake" 517: Test timeout computed to be: 1500 517: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 517: PARMS is warp;--xf;/<>/Testing/Data/xf-translation-1.txt;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf 517: EXPECTED_ERRNO is 511: RETVAL: 0 511: STDOUT: Loading xform (/<>/Testing/Data/itk-affine-a.tfm) 511: Setting PIH from M_IMG 511: PIH is: 511: Origin = -243.4211 -243.4211 -243.4211 511: Size = 38 38 38 511: Spacing = 13.1579 13.1579 13.1579 511: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 511: Rt_study_warp: Warping m_img 511: plm_warp_itk: xform_to_itk_vf 511: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd) 511: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd 511: Rt_study_warp: warp and save ss. 511: Finished! 511: 511: STDERR: 511: Not an error 163/571 Test #511: plm-warp-f ............................ Passed 0.10 sec test 520 Start 520: plm-warp-i 520: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/Testing/Data/xf-translation-1.txt;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/<>/cmake/RUN_CTEST.cmake" 520: Test timeout computed to be: 1500 520: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 520: PARMS is warp;--xf;/<>/Testing/Data/xf-translation-1.txt;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf 520: EXPECTED_ERRNO is 514: RETVAL: 0 514: STDOUT: Loading xform (/<>/Testing/Data/itk-affine-a.tfm) 514: Setting PIH from M_IMG 514: PIH is: 514: Origin = -243.4211 -243.4211 -243.4211 514: Size = 38 38 38 514: Spacing = 13.1579 13.1579 13.1579 514: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 514: Rt_study_warp: Warping m_img 514: plm_warp_itk: xform_to_itk_vf 514: plm_warp_itk: convert_to_itk 514: plm_warp_itk: warping... 514: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd) 514: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd 514: Rt_study_warp: warp and save ss. 514: Finished! 514: 514: STDERR: 514: Not an error 164/571 Test #514: plm-warp-g ............................ Passed 0.09 sec test 523 Start 523: plm-xf-convert-a 523: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/<>/Testing/Data/xf-bspline-1.txt;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;" "-P" "/<>/cmake/RUN_CTEST.cmake" 523: Test timeout computed to be: 1500 523: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 523: PARMS is xf-convert;--input;/<>/Testing/Data/xf-bspline-1.txt;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125; 517: RETVAL: 0 517: STDOUT: Loading xform (/<>/Testing/Data/xf-translation-1.txt) 517: Setting PIH from M_IMG 517: PIH is: 517: Origin = -25.0000 -25.0000 -25.0000 517: Size = 38 38 38 517: Spacing = 1.3158 1.3158 1.3158 517: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 517: Rt_study_warp: Warping m_img 517: plm_warp_itk: xform_to_itk_vf 517: plm_warp_itk: convert_to_itk 517: plm_warp_itk: warping... 517: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd) 517: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd 517: Rt_study_warp: warp and save ss. 517: Finished! 517: 517: STDERR: 523: EXPECTED_ERRNO is 517: Not an error 165/571 Test #517: plm-warp-h ............................ Passed 0.07 sec test 527 Start 527: plm-xf-convert-d-warp-1 527: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/<>/Testing/Data/plm-xf-convert.txt;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 527: Test timeout computed to be: 1500 527: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 527: PARMS is warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/<>/Testing/Data/plm-xf-convert.txt;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd 527: EXPECTED_ERRNO is 520: RETVAL: 0 520: STDOUT: Loading xform (/<>/Testing/Data/xf-translation-1.txt) 520: Setting PIH from M_IMG 520: PIH is: 520: Origin = -25.0000 -25.0000 -25.0000 520: Size = 38 38 38 520: Spacing = 1.3158 1.3158 1.3158 520: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 520: Rt_study_warp: Warping m_img 520: plm_warp_itk: xform_to_itk_vf 520: plm_warp_itk: convert_to_itk 520: plm_warp_itk: warping... 520: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd) 520: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd 520: Rt_study_warp: warp and save ss. 520: Finished! 520: 520: STDERR: 520: Not an error 166/571 Test #520: plm-warp-i ............................ Passed 0.09 sec test 530 Start 530: plm-xf-convert-d-warp-2 530: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 530: Test timeout computed to be: 1500 530: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 530: PARMS is warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd 530: EXPECTED_ERRNO is 523: RETVAL: 0 523: STDOUT: bspline_xform_initialize 523: rdims = (1,1,1) 523: vox_per_rgn = (4,4,4) 523: cdims = (4 4 4) 523: about to xform_convert 523: Converting to (itk) vector field 523: did xform_convert 523: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha 523: 523: STDERR: 523: Not an error 167/571 Test #523: plm-xf-convert-a ...................... Passed 0.05 sec test 536 Start 536: plm-xf-convert-h 536: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf" "-P" "/<>/cmake/RUN_CTEST.cmake" 536: Test timeout computed to be: 1500 536: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 536: PARMS is xf-convert;--filenames-without-uids;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf 536: EXPECTED_ERRNO is 527: RETVAL: 0 527: STDOUT: Loading xform (/<>/Testing/Data/plm-xf-convert.txt) 527: bspline_xform_initialize 527: rdims = (2,2,2) 527: vox_per_rgn = (11,11,11) 527: cdims = (5 5 5) 527: Setting PIH from XFORM 527: PIH is: 527: Origin = -24.3421 -24.3421 -24.3421 527: Size = 19 19 19 527: Spacing = 2.6316 2.6316 2.6316 527: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 527: Rt_study_warp: Warping m_img 527: Running: plm_warp_native 527: Converting input image... 527: Converting xform... 527: bspline_xform_initialize 527: rdims = (2,2,2) 527: vox_per_rgn = (11,11,11) 527: cdims = (5 5 5) 527: Creating output vf... 527: Creating output volume... 527: Running native warper... 527: bspline_warp complete. 527: Back convert to original type... 527: > Convert vf to itk 527: > Conversion complete. 527: plm_warp_native is complete. 527: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd) 527: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd 527: Rt_study_warp: warp and save ss. 527: Finished! 527: 527: STDERR: 527: Not an error 168/571 Test #527: plm-xf-convert-d-warp-1 ............... Passed 0.08 sec test 539 Start 539: xf-invert-vf-zero-1 539: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 539: Test timeout computed to be: 1500 539: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 539: PARMS is xf-invert;--input;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha 539: EXPECTED_ERRNO is 536: RETVAL: 0 536: STDOUT: about to xform_convert 536: Converting to (itk) vector field 536: did xform_convert 536: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd 536: 536: STDERR: 536: Not an error 169/571 Test #536: plm-xf-convert-h ...................... Passed 0.08 sec test 542 Start 542: xf-invert-vf-trans-1 542: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10" "-P" "/<>/cmake/RUN_CTEST.cmake" 542: Test timeout computed to be: 1500 542: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 542: PARMS is xf-invert;--input;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10 542: EXPECTED_ERRNO is 429: RETVAL: 0 429: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 429: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 429: Launching registration worker thread 429: Inside registration worker thread 429: Doing registration stage 429: [1] xf_in->m_type = 0, xf_out->m_type = 0 429: RESAMPLE 1 1: (1 1 1), (1 1 1) 429: RESAMPLE 1 1: (1 1 1), (1 1 1) 429: volume_calc_grad complete. 429: Computing grid search extent. 429: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 429: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 429: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 429: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 429: [0 0 0] -0.366001 * 429: Global grid search 429: [-10 -10 -10] -0.0657023 429: [-6 -10 -10] -0.0463935 429: [-2 -10 -10] -0.0578569 429: [2 -10 -10] -0.104587 429: [6 -10 -10] -0.134745 429: [10 -10 -10] -0.132346 429: [-10 -6 -10] -0.0447641 429: [-6 -6 -10] -0.0444838 429: [-2 -6 -10] -0.0804107 429: [2 -6 -10] -0.157649 429: [6 -6 -10] -0.217923 429: [10 -6 -10] -0.228427 429: [-10 -2 -10] -0.0363824 429: [-6 -2 -10] -0.0510381 429: [-2 -2 -10] -0.105651 429: [2 -2 -10] -0.207715 429: [6 -2 -10] -0.301396 429: [10 -2 -10] -0.331995 429: [-10 2 -10] -0.0360564 429: [-6 2 -10] -0.0510835 429: [-2 2 -10] -0.105603 429: [2 2 -10] -0.207349 429: [6 2 -10] -0.301597 429: [10 2 -10] -0.333546 429: [-10 6 -10] -0.043624 429: [-6 6 -10] -0.0435673 429: [-2 6 -10] -0.0792328 429: [2 6 -10] -0.15537 429: [6 6 -10] -0.21609 429: [10 6 -10] -0.229483 429: [-10 10 -10] -0.0625422 429: [-6 10 -10] -0.044456 429: [-2 10 -10] -0.0566679 429: [2 10 -10] -0.102753 429: [6 10 -10] -0.133354 429: [10 10 -10] -0.133022 429: [-10 -10 -6] -0.0447641 429: [-6 -10 -6] -0.0444838 429: [-2 -10 -6] -0.0804107 429: [2 -10 -6] -0.157649 429: [6 -10 -6] -0.217923 429: [10 -10 -6] -0.228427 429: [-10 -6 -6] -0.0419245 429: [-6 -6 -6] -0.0616512 429: [-2 -6 -6] -0.125976 429: [2 -6 -6] -0.24928 429: [6 -6 -6] -0.370675 * 429: [10 -6 -6] -0.41107 * 429: [-10 -2 -6] -0.0458151 429: [-6 -2 -6] -0.0813895 429: [-2 -2 -6] -0.168343 429: [2 -2 -6] -0.331623 429: [6 -2 -6] -0.520659 * 429: [10 -2 -6] -0.60981 * 429: [-10 2 -6] -0.0460451 429: [-6 2 -6] -0.0818015 429: [-2 2 -6] -0.168558 429: [2 2 -6] -0.330972 429: [6 2 -6] -0.519715 429: [10 2 -6] -0.610965 * 429: [-10 6 -6] -0.0416946 429: [-6 6 -6] -0.0613956 429: [-2 6 -6] -0.125047 429: [2 6 -6] -0.246207 429: [6 6 -6] -0.366747 429: [10 6 -6] -0.41144 429: [-10 10 -6] -0.043562 429: [-6 10 -6] -0.0440007 429: [-2 10 -6] -0.0795809 429: [2 10 -6] -0.155169 429: [6 10 -6] -0.215936 429: [10 10 -6] -0.22921 429: [-10 -10 -2] -0.0363824 429: [-6 -10 -2] -0.0510381 429: [-2 -10 -2] -0.105651 429: [2 -10 -2] -0.207715 429: [6 -10 -2] -0.301396 429: [10 -10 -2] -0.331995 429: [-10 -6 -2] -0.0458151 429: [-6 -6 -2] -0.0813895 429: [-2 -6 -2] -0.168343 429: [2 -6 -2] -0.331623 429: [6 -6 -2] -0.520659 429: [10 -6 -2] -0.60981 429: [-10 -2 -2] -0.0623074 429: [-6 -2 -2] -0.114225 429: [-2 -2 -2] -0.227442 429: [2 -2 -2] -0.450611 429: [6 -2 -2] -0.79525 * 429: [10 -2 -2] -1.06281 * 429: [-10 2 -2] -0.0628058 429: [-6 2 -2] -0.114854 429: [-2 2 -2] -0.227853 429: [2 2 -2] -0.45011 429: [6 2 -2] -0.79301 429: [10 2 -2] -1.06302 * 429: [-10 6 -2] -0.0464919 429: [-6 6 -2] -0.0817851 429: [-2 6 -2] -0.167859 429: [2 6 -2] -0.328807 429: [6 6 -2] -0.516135 429: [10 6 -2] -0.60998 429: [-10 10 -2] -0.036042 429: [-6 10 -2] -0.0508055 429: [-2 10 -2] -0.104874 429: [2 10 -2] -0.205278 429: [6 10 -2] -0.299375 429: [10 10 -2] -0.332915 429: [-10 -10 2] -0.0360564 429: [-6 -10 2] -0.0510835 429: [-2 -10 2] -0.105603 429: [2 -10 2] -0.207349 429: [6 -10 2] -0.301597 429: [10 -10 2] -0.333546 429: [-10 -6 2] -0.0460451 429: [-6 -6 2] -0.0818015 429: [-2 -6 2] -0.168558 429: [2 -6 2] -0.330972 429: [6 -6 2] -0.519715 429: [10 -6 2] -0.610965 429: [-10 -2 2] -0.0628058 429: [-6 -2 2] -0.114854 429: [-2 -2 2] -0.227853 429: [2 -2 2] -0.45011 429: [6 -2 2] -0.79301 429: [10 -2 2] -1.06302 429: [-10 2 2] -0.0634055 429: [-6 2 2] -0.115563 429: [-2 2 2] -0.228352 429: [2 2 2] -0.449777 429: [6 2 2] -0.791187 429: [10 2 2] -1.06397 * 429: [-10 6 2] -0.0467633 429: [-6 6 2] -0.0822511 429: [-2 6 2] -0.168209 429: [2 6 2] -0.328525 429: [6 6 2] -0.515825 429: [10 6 2] -0.611858 429: [-10 10 2] -0.0358199 429: [-6 10 2] -0.0509452 429: [-2 10 2] -0.104965 429: [2 10 2] -0.205182 429: [6 10 2] -0.299823 429: [10 10 2] -0.334637 429: [-10 -10 6] -0.043624 429: [-6 -10 6] -0.0435673 429: [-2 -10 6] -0.0792328 429: [2 -10 6] -0.15537 429: [6 -10 6] -0.21609 429: [10 -10 6] -0.229483 429: [-10 -6 6] -0.0416946 429: [-6 -6 6] -0.0613956 429: [-2 -6 6] -0.125047 429: [2 -6 6] -0.246207 429: [6 -6 6] -0.366747 429: [10 -6 6] -0.41144 429: [-10 -2 6] -0.0464919 429: [-6 -2 6] -0.0817851 429: [-2 -2 6] -0.167859 429: [2 -2 6] -0.328807 429: [6 -2 6] -0.516135 429: [10 -2 6] -0.60998 429: [-10 2 6] -0.0467633 429: [-6 2 6] -0.0822511 429: [-2 2 6] -0.168209 429: [2 2 6] -0.328525 429: [6 2 6] -0.515825 429: [10 2 6] -0.611858 429: [-10 6 6] -0.0420716 429: [-6 6 6] -0.0616282 429: [-2 6 6] -0.124622 429: [2 6 6] -0.244167 429: [6 6 6] -0.364463 429: [10 6 6] -0.413552 429: [-10 10 6] -0.042919 429: [-6 10 6] -0.0432268 429: [-2 10 6] -0.078484 429: [2 10 6] -0.153286 429: [6 10 6] -0.214701 429: [10 10 6] -0.230766 429: [-10 -10 10] -0.0625422 429: [-6 -10 10] -0.044456 429: [-2 -10 10] -0.0566679 429: [2 -10 10] -0.102753 429: [6 -10 10] -0.133354 429: [10 -10 10] -0.133022 429: [-10 -6 10] -0.043562 429: [-6 -6 10] -0.0440007 429: [-2 -6 10] -0.0795809 429: [2 -6 10] -0.155169 429: [6 -6 10] -0.215936 429: [10 -6 10] -0.22921 429: [-10 -2 10] -0.036042 429: [-6 -2 10] -0.0508055 429: [-2 -2 10] -0.104874 429: [2 -2 10] -0.205278 429: [6 -2 10] -0.299375 429: [10 -2 10] -0.332915 429: [-10 2 10] -0.0358199 429: [-6 2 10] -0.0509452 429: [-2 2 10] -0.104965 429: [2 2 10] -0.205182 429: [6 2 10] -0.299823 429: [10 2 10] -0.334637 429: [-10 6 10] -0.042919 429: [-6 6 10] -0.0432268 429: [-2 6 10] -0.078484 429: [2 6 10] -0.153286 429: [6 6 10] -0.214701 429: [10 6 10] -0.230766 429: [-10 10 10] -0.0609081 429: [-6 10 10] -0.0434493 429: [-2 10 10] -0.0559197 429: [2 10 10] -0.101407 429: [6 10 10] -0.132652 429: [10 10 10] -0.134325 429: [2] xf_out->m_type = 1, xf_in->m_type = 0 429: Doing registration stage 429: [1] xf_in->m_type = 1, xf_out->m_type = 0 429: RESAMPLE 1 1: (1 1 1), (1 1 1) 429: RESAMPLE 1 1: (1 1 1), (1 1 1) 429: volume_calc_grad complete. 429: Computing grid search extent. 429: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 429: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 429: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 429: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 429: [10 2 2] -1.06397 * 429: Local grid search 429: [6.4 -1.6 -1.6] -0.883407 429: [8.8 -1.6 -1.6] -1.12376 * 429: [11.2 -1.6 -1.6] -1.12967 * 429: [13.6 -1.6 -1.6] -0.914496 429: [6.4 0.8 -1.6] -0.913773 429: [8.8 0.8 -1.6] -1.19876 * 429: [11.2 0.8 -1.6] -1.20812 * 429: [13.6 0.8 -1.6] -0.955547 429: [6.4 3.2 -1.6] -0.766583 429: [8.8 3.2 -1.6] -0.916579 429: [11.2 3.2 -1.6] -0.920988 429: [13.6 3.2 -1.6] -0.784372 429: [6.4 5.6 -1.6] -0.576245 429: [8.8 5.6 -1.6] -0.655686 429: [11.2 5.6 -1.6] -0.653953 429: [13.6 5.6 -1.6] -0.574785 429: [6.4 -1.6 0.8] -0.913773 429: [8.8 -1.6 0.8] -1.19876 429: [11.2 -1.6 0.8] -1.20812 429: [13.6 -1.6 0.8] -0.955547 429: [6.4 0.8 0.8] -0.948114 429: [8.8 0.8 0.8] -1.30327 * 429: [11.2 0.8 0.8] -1.3196 * 429: [13.6 0.8 0.8] -1.00372 429: [6.4 3.2 0.8] -0.788348 429: [8.8 3.2 0.8] -0.951558 429: [11.2 3.2 0.8] -0.958168 429: [13.6 3.2 0.8] -0.812303 429: [6.4 5.6 0.8] -0.588765 429: [8.8 5.6 0.8] -0.673812 429: [11.2 5.6 0.8] -0.67344 429: [13.6 5.6 0.8] -0.591068 429: [6.4 -1.6 3.2] -0.766583 429: [8.8 -1.6 3.2] -0.916579 429: [11.2 -1.6 3.2] -0.920988 429: [13.6 -1.6 3.2] -0.784372 429: [6.4 0.8 3.2] -0.788348 429: [8.8 0.8 3.2] -0.951558 429: [11.2 0.8 3.2] -0.958168 429: [13.6 0.8 3.2] -0.812303 429: [6.4 3.2 3.2] -0.677918 429: [8.8 3.2 3.2] -0.791729 429: [11.2 3.2 3.2] -0.794915 429: [13.6 3.2 3.2] -0.688998 429: [6.4 5.6 3.2] -0.520489 429: [8.8 5.6 3.2] -0.585515 429: [11.2 5.6 3.2] -0.583462 429: [13.6 5.6 3.2] -0.515484 429: [6.4 -1.6 5.6] -0.576245 429: [8.8 -1.6 5.6] -0.655686 429: [11.2 -1.6 5.6] -0.653953 429: [13.6 -1.6 5.6] -0.574785 429: [6.4 0.8 5.6] -0.588765 429: [8.8 0.8 5.6] -0.673812 429: [11.2 0.8 5.6] -0.67344 429: [13.6 0.8 5.6] -0.591068 429: [6.4 3.2 5.6] -0.520489 429: [8.8 3.2 5.6] -0.585515 429: [11.2 3.2 5.6] -0.583462 429: [13.6 3.2 5.6] -0.515484 429: [6.4 5.6 5.6] -0.412801 429: [8.8 5.6 5.6] -0.455339 429: [11.2 5.6 5.6] -0.451028 429: [13.6 5.6 5.6] -0.399458 429: [2] xf_out->m_type = 1, xf_in->m_type = 1 429: Warping... 429: plm_warp_itk: xform_to_itk_vf 429: plm_warp_itk: convert_to_itk 429: plm_warp_itk: warping... 429: ** Registration worker thread finished. 429: Saving image... 429: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha 429: Load: 0.0255091 429: Run: 1.09953 429: Save: 0.00237703 429: Total: 1.12742 429: Finished! 429: 429: STDERR: 429: Not an error 170/571 Test #429: plm-reg-trans-mi-a .................... Passed 1.24 sec test 549 Start 549: proton-dose-1 549: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 549: Test timeout computed to be: 1500 549: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 549: PARMS is dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt 549: EXPECTED_ERRNO is 530: RETVAL: 0 530: STDOUT: Loading xform (/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm) 530: BSplineDeformableTransform (0x55786ec02470) 530: RTTI typeinfo: itk::BSplineDeformableTransform 530: Reference Count: 3 530: Modified Time: 1488 530: Debug: Off 530: Object Name: 530: Observers: 530: none 530: CoefficientImage: [ 0x55786ebfd800, 0x55786ec01390, 0x55786ec01650 ] 530: ValidRegion: ImageRegion (0x55786ec025c0) 530: Dimension: 3 530: Index: [1, 1, 1] 530: Size: [2, 2, 2] 530: 530: BulkTransform: 0x55786e9de050 530: WeightsFunction: 0x55786ea5a410 530: BulkTransformType: IdentityTransform 530: GridOrigin: [-28.9474, -28.9474, -28.9474] 530: GridSpacing: [28.9474, 28.9474, 28.9474] 530: GridDirection: 1 0 0 530: 0 1 0 530: 0 0 1 530: 530: GridRegion: ImageRegion (0x55786ebfda08) 530: Dimension: 3 530: Index: [0, 0, 0] 530: Size: [4, 4, 4] 530: 530: Setting PIH from M_IMG 530: PIH is: 530: Origin = -25.0000 -25.0000 -25.0000 530: Size = 38 38 38 530: Spacing = 1.3158 1.3158 1.3158 530: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 530: Rt_study_warp: Warping m_img 530: plm_warp_itk: xform_to_itk_vf 530: plm_warp_itk: convert_to_itk 530: plm_warp_itk: warping... 530: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd) 530: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd 530: Rt_study_warp: warp and save ss. 530: Finished! 530: 530: STDERR: 530: Not an error 171/571 Test #530: plm-xf-convert-d-warp-2 ............... Passed 0.14 sec test 552 Start 552: proton-dose-4a 552: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 552: Test timeout computed to be: 1500 539: RETVAL: 0 539: STDOUT: Paste and smooth loop 539: Iteration 0/20 539: Convolving 539: Iteration 1/20 539: Convolving 539: Iteration 2/20 539: Convolving 539: Iteration 3/20 539: Convolving 539: Iteration 4/20 539: Convolving 539: Iteration 5/20 539: Convolving 539: Iteration 6/20 539: Convolving 539: Iteration 7/20 539: Convolving 539: Iteration 8/20 539: Convolving 539: Iteration 9/20 539: Convolving 539: Iteration 10/20 539: Convolving 539: Iteration 11/20 539: Convolving 539: Iteration 12/20 539: Convolving 539: Iteration 13/20 539: Convolving 539: Iteration 14/20 539: Convolving 539: Iteration 15/20 539: Convolving 539: Iteration 16/20 539: Convolving 539: Iteration 17/20 539: Convolving 539: Iteration 18/20 539: Convolving 539: Iteration 19/20 539: Convolving 539: Done. 539: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha 539: 539: STDERR: 539: Not an error 172/571 Test #539: xf-invert-vf-zero-1 ................... Passed 0.10 sec test 555 Start 555: proton-dose-4d 555: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 555: Test timeout computed to be: 1500 552: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 552: PARMS is dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt 552: EXPECTED_ERRNO is 555: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 555: PARMS is dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt 555: EXPECTED_ERRNO is 542: RETVAL: 0 542: STDOUT: Paste and smooth loop 542: Iteration 0/10 542: Convolving 542: Iteration 1/10 542: Convolving 542: Iteration 2/10 542: Convolving 542: Iteration 3/10 542: Convolving 542: Iteration 4/10 542: Convolving 542: Iteration 5/10 542: Convolving 542: Iteration 6/10 542: Convolving 542: Iteration 7/10 542: Convolving 542: Iteration 8/10 542: Convolving 542: Iteration 9/10 542: Convolving 542: Done. 542: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha 542: 542: STDERR: 542: Not an error 173/571 Test #542: xf-invert-vf-trans-1 .................. Passed 0.09 sec test 558 Start 558: proton-dose-5a 558: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 558: Test timeout computed to be: 1500 558: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 558: PARMS is dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt 558: EXPECTED_ERRNO is 549: RETVAL: 0 549: STDOUT: 549: [PLAN] 549: patient : /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 549: target : 549: dose_out : /<>/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha 549: debug : 0 549: dose norm : 70 549: 549: [SETTINGS] 549: flavor: a ** 549: homo_approx: n ** 549: ray_step: 1 ** 549: aperture_out: ** 549: proj_dose_out: ** 549: proj_img_out: ** 549: range_comp_out: ** 549: sigma_out: ** 549: wed_out: ** 549: beam_weight: 1 ** 549: 549: [GEOMETRY & APERTURE] 549: source: 0 -2000 0 ** 549: isocenter: 0 0 0 ** 549: vup: 0 0 1 ** 549: offset: 1500 ** 549: ap_center in pixels: 10 10 ** 549: i_res: 21 21 ** 549: spacing: 1 1 ** 549: source_size: 0 ** 549: ap_file_in: ** 549: rc_file_in: ** 549: smearing: 0 ** 549: 549: [PEAK] 549: E0: P0 549: spread: P0 549: weight: P0 549: 549: Start dose calculation Beam 1 549: Plan_calc::compute_beam_dose(beam) entry -- 549: Setting RVRTS = 1 549: FPD = 347.500001, BPD = 647.528776 549: 21 21 301 549: Setting RVRTS = 1 549: FPD = 347.500001, BPD = 647.528776 549: 21 21 301 549: Priority 4. Prescription depths detected. Any target depth will not be considered. 549: prescription min/max: 70 mm, 90 mm. 549: 549: 16 Mono-energetic BP used: 549: 111 110 109 108 107 106 105 104 103 102 101 100 99 98 97 96 549: Adding peak to sobp (111.000000, 1.000000, 0.892866) [0.010000, 111.000000] 549: Adding peak to sobp (110.000000, 1.000000, 0.199040) [0.010000, 111.000000] 549: Adding peak to sobp (109.000000, 1.000000, 0.226753) [0.010000, 111.000000] 549: Adding peak to sobp (108.000000, 1.000000, 0.173442) [0.010000, 111.000000] 549: Adding peak to sobp (107.000000, 1.000000, 0.151005) [0.010000, 111.000000] 549: Adding peak to sobp (106.000000, 1.000000, 0.133983) [0.010000, 111.000000] 549: Adding peak to sobp (105.000000, 1.000000, 0.120333) [0.010000, 111.000000] 549: Adding peak to sobp (104.000000, 1.000000, 0.111431) [0.010000, 111.000000] 549: Adding peak to sobp (103.000000, 1.000000, 0.102203) [0.010000, 111.000000] 549: Adding peak to sobp (102.000000, 1.000000, 0.095667) [0.010000, 111.000000] 549: Adding peak to sobp (101.000000, 1.000000, 0.089522) [0.010000, 111.000000] 549: Adding peak to sobp (100.000000, 1.000000, 0.084473) [0.010000, 111.000000] 549: Adding peak to sobp (99.000000, 1.000000, 0.079452) [0.010000, 111.000000] 549: Adding peak to sobp (98.000000, 1.000000, 0.078322) [0.010000, 111.000000] 549: Adding peak to sobp (97.000000, 1.000000, 0.063062) [0.010000, 111.000000] 549: Adding peak to sobp (96.000000, 1.000000, 0.099306) [0.010000, 111.000000] 549: **** (1) 549: Raw dose at the maximum (0, -30, 0) : 0.999508 A.U. 549: Dose normalized at the maximum to 1 x 70 Gy. 549: Primary PB num. x, y: 21, 21, primary PB res. x, y: 1 PB/mm, 1 PB/mm 549: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha 549: Sigma: 0.000000 seconds 549: Calc: 0.488729 seconds 549: IO: 0.019630 seconds 549: Reformat: 0.000000 seconds 549: Misc: 0.001853 seconds 549: done. 549: 549: Total execution time : 0.523062 seconds. 549: 549: STDERR: 549: Not an error 174/571 Test #549: proton-dose-1 ......................... Passed 0.58 sec test 561 Start 561: proton-dose-5d 561: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 561: Test timeout computed to be: 1500 561: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 561: PARMS is dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt 561: EXPECTED_ERRNO is 552: RETVAL: 0 552: STDOUT: 552: [PLAN] 552: patient : /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 552: target : /<>/obj-x86_64-linux-gnu/Testing/ptv-1.mha 552: dose_out : /<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha 552: debug : 0 552: dose norm : 100 552: 552: [SETTINGS] 552: flavor: a ** 552: homo_approx: n ** 552: ray_step: 1 ** 552: aperture_out: ** 552: proj_dose_out: ** 552: proj_img_out: ** 552: range_comp_out: ** 552: sigma_out: ** 552: wed_out: ** 552: beam_weight: 1 ** 552: 552: [GEOMETRY & APERTURE] 552: source: 0 -2000 0 ** 552: isocenter: 0 0 0 ** 552: vup: 0 0 1 ** 552: offset: 1500 ** 552: ap_center in pixels: 20 20 ** 552: i_res: 41 41 ** 552: spacing: 3.75 3.75 ** 552: source_size: 0 ** 552: ap_file_in: ** 552: rc_file_in: ** 552: smearing: 5 ** 552: 552: [PEAK] 552: E0: P0 552: spread: P0 552: weight: P0 552: 552: Start dose calculation Beam 1 552: Plan_calc::compute_beam_dose(beam) entry -- 552: Setting RVRTS = 1 552: FPD = 347.500001, BPD = 649.116731 552: 41 41 302 552: Setting RVRTS = 1 552: FPD = 347.500001, BPD = 649.116731 552: 41 41 302 552: Setting RVRTS = 1 552: FPD = 347.500001, BPD = 649.116731 552: 41 41 302 552: Priority 5. Target detected. 552: Computing beam modifiers for passive target 552: Compute target wepl_min_max... 552: Apply lateral smearing to the target... 552: Smearing = 5.000000, Smearing_ap = 3.750000 552: Strel size = (1,1), (3,3) 552: 0 1 0 552: 1 1 1 552: 0 1 0 552: Apply proximal and distal ... 552: Compute max wed... 552: Compute the aperture... 552: Compute range compensator... 552: Max wed in the target is 117.554 mm. 552: Min wed in the target is 88.5526 mm. 552: ires = 41 41 552: proj_vol dim = 41 41 302 552: prescription min/max: 88.5526 mm, 117.554 mm. 552: 552: 22 Mono-energetic BP used: 552: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 552: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] 552: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] 552: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] 552: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] 552: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] 552: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] 552: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] 552: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] 552: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] 552: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] 552: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] 552: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] 552: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] 552: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] 552: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] 552: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] 552: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] 552: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] 552: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] 552: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] 552: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] 552: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] 552: **** (1) 552: Raw dose at the maximum (15, 15, 10) : 1.016 A.U. 552: Dose normalized at the maximum to 1 x 100%. 552: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 552: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha 552: Sigma: 0.000000 seconds 552: Calc: 0.881923 seconds 552: IO: 0.021477 seconds 552: Reformat: 0.000000 seconds 552: Misc: 0.008121 seconds 552: done. 552: 552: Total execution time : 0.928701 seconds. 552: 552: STDERR: 552: Not an error 175/571 Test #552: proton-dose-4a ........................ Passed 0.98 sec test 564 Start 564: proton-dose-6a 564: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 564: Test timeout computed to be: 1500 564: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 564: PARMS is dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt 564: EXPECTED_ERRNO is 558: RETVAL: 0 558: STDOUT: 558: [PLAN] 558: patient : /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 558: target : /<>/obj-x86_64-linux-gnu/Testing/ptv-1.mha 558: dose_out : /<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 558: debug : 0 558: dose norm : 100 558: 558: [SETTINGS] 558: flavor: a ** 558: homo_approx: n ** 558: ray_step: 1 ** 558: aperture_out: ** 558: proj_dose_out: ** 558: proj_img_out: ** 558: range_comp_out: ** 558: sigma_out: ** 558: wed_out: ** 558: beam_weight: 1 ** 558: 558: [GEOMETRY & APERTURE] 558: source: 0 -2000 0 ** 558: isocenter: 0 0 0 ** 558: vup: 0 0 1 ** 558: offset: 1500 ** 558: ap_center in pixels: 20 20 ** 558: i_res: 41 41 ** 558: spacing: 3.75 3.75 ** 558: source_size: 0 ** 558: ap_file_in: ** 558: rc_file_in: ** 558: smearing: 5 ** 558: 558: [PEAK] 558: E0: P0 558: spread: P0 558: weight: P0 558: 558: Start dose calculation Beam 1 558: Plan_calc::compute_beam_dose(beam) entry -- 558: Setting RVRTS = 1 558: FPD = 347.500001, BPD = 649.116731 558: 41 41 302 558: Setting RVRTS = 1 558: FPD = 347.500001, BPD = 649.116731 558: 41 41 302 558: Setting RVRTS = 1 558: FPD = 347.500001, BPD = 649.116731 558: 41 41 302 558: Priority 5. Target detected. 558: Compute target wepl_min_max... 558: Apply lateral smearing to the target... 558: Smearing = 5.000000, Smearing_ap = 3.750000 558: Strel size = (1,1), (3,3) 558: 0 1 0 558: 1 1 1 558: 0 1 0 558: Apply proximal and distal ... 558: Compute max wed... 558: Compute the aperture... 558: Max wed in the target is 117.554 mm. 558: Min wed in the target is 88.5523 mm. 558: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. 558: Min and max energies for treating the PTV: 109 MeV and 130 MeV. 558: 558: 22 Mono-energetic BP used: 558: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 558: Optimization of the particle number map for any mono-energetic slice in progress... 558: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] 558: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. 558: Dose normalized at the maximum to 1 x 100%. 558: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 558: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 558: Sigma: 0.000000 seconds 558: Calc: 0.944616 seconds 558: IO: 0.021255 seconds 558: Reformat: 0.000000 seconds 558: Misc: 0.007822 seconds 558: done. 558: 558: Total execution time : 0.991063 seconds. 558: 558: STDERR: 558: Not an error 176/571 Test #558: proton-dose-5a ........................ Passed 1.05 sec test 38 Start 38: rect-10 38: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50" "-P" "/<>/cmake/RUN_CTEST.cmake" 38: Test timeout computed to be: 1500 38: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 38: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50 38: EXPECTED_ERRNO is 38: RETVAL: 0 38: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-10.mha 38: 38: STDERR: 38: Not an error 177/571 Test #38: rect-10 ............................... Passed 0.05 sec test 41 Start 41: rect-11 41: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60" "-P" "/<>/cmake/RUN_CTEST.cmake" 41: Test timeout computed to be: 1500 41: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 41: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60 41: EXPECTED_ERRNO is 41: RETVAL: 0 41: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-11.mha 41: 41: STDERR: 41: Not an error 178/571 Test #41: rect-11 ............................... Passed 0.05 sec test 50 Start 50: rect-19 50: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-19" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150" "-P" "/<>/cmake/RUN_CTEST.cmake" 50: Test timeout computed to be: 1500 50: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 50: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150 50: EXPECTED_ERRNO is 50: RETVAL: 0 50: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-19.mha 50: 50: STDERR: 50: Not an error 179/571 Test #50: rect-19 ............................... Passed 0.05 sec test 52 Start 52: rectarr-01 52: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5" "-P" "/<>/cmake/RUN_CTEST.cmake" 52: Test timeout computed to be: 1500 52: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 52: PARMS is synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5 52: EXPECTED_ERRNO is 555: RETVAL: 0 555: STDOUT: 555: [PLAN] 555: patient : /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 555: target : /<>/obj-x86_64-linux-gnu/Testing/ptv-1.mha 555: dose_out : /<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha 555: debug : 0 555: dose norm : 100 555: 555: [SETTINGS] 555: flavor: d ** 555: homo_approx: n ** 555: ray_step: 1 ** 555: aperture_out: ** 555: proj_dose_out: ** 555: proj_img_out: ** 555: range_comp_out: ** 555: sigma_out: ** 555: wed_out: ** 555: beam_weight: 1 ** 555: 555: [GEOMETRY & APERTURE] 555: source: 0 -2000 0 ** 555: isocenter: 0 0 0 ** 555: vup: 0 0 1 ** 555: offset: 1500 ** 555: ap_center in pixels: 20 20 ** 555: i_res: 41 41 ** 555: spacing: 3.75 3.75 ** 555: source_size: 0 ** 555: ap_file_in: ** 555: rc_file_in: ** 555: smearing: 5 ** 555: 555: [PEAK] 555: E0: P0 555: spread: P0 555: weight: P0 555: 555: Start dose calculation Beam 1 555: Plan_calc::compute_beam_dose(beam) entry -- 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: Priority 5. Target detected. 555: Computing beam modifiers for passive target 555: Compute target wepl_min_max... 555: Apply lateral smearing to the target... 555: Smearing = 5.000000, Smearing_ap = 3.750000 555: Strel size = (1,1), (3,3) 555: 0 1 0 555: 1 1 1 555: 0 1 0 555: Apply proximal and distal ... 555: Compute max wed... 555: Compute the aperture... 555: Compute range compensator... 555: Max wed in the target is 117.554 mm. 555: Min wed in the target is 88.5526 mm. 555: ires = 41 41 555: proj_vol dim = 41 41 302 555: prescription min/max: 88.5526 mm, 117.554 mm. 555: 555: 22 Mono-energetic BP used: 555: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 555: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] 555: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] 555: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] 555: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] 555: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] 555: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] 555: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] 555: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] 555: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] 555: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] 555: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] 555: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] 555: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] 555: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] 555: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] 555: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] 555: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] 555: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] 555: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] 555: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] 555: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] 555: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] 555: **** (1) 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.87445 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000474397 mm. 555: Global sigma computed - Global sigma_max = 2.87445 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.86823 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000479245 mm. 555: Global sigma computed - Global sigma_max = 2.86823 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.81247 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000485151 mm. 555: Global sigma computed - Global sigma_max = 2.81247 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.80639 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000490292 mm. 555: Global sigma computed - Global sigma_max = 2.80639 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.74919 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000495583 mm. 555: Global sigma computed - Global sigma_max = 2.74919 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.69289 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000501994 mm. 555: Global sigma computed - Global sigma_max = 2.69289 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.68596 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000506613 mm. 555: Global sigma computed - Global sigma_max = 2.68596 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.62886 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000512341 mm. 555: Global sigma computed - Global sigma_max = 2.62886 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.57127 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000517222 mm. 555: Global sigma computed - Global sigma_max = 2.57127 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.56307 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000523251 mm. 555: Global sigma computed - Global sigma_max = 2.56307 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.50537 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000528418 mm. 555: Global sigma computed - Global sigma_max = 2.50537 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.49685 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000534772 mm. 555: Global sigma computed - Global sigma_max = 2.49685 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.4384 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000540249 mm. 555: Global sigma computed - Global sigma_max = 2.4384 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.42949 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000546957 mm. 555: Global sigma computed - Global sigma_max = 2.42949 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.37035 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000552773 mm. 555: Global sigma computed - Global sigma_max = 2.37035 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.36098 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000559867 mm. 555: Global sigma computed - Global sigma_max = 2.36098 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.30119 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000566053 mm. 555: Global sigma computed - Global sigma_max = 2.30119 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.29132 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000573569 mm. 555: Global sigma computed - Global sigma_max = 2.29132 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.23096 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000580162 mm. 555: Global sigma computed - Global sigma_max = 2.23096 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.22053 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000588138 mm. 555: Global sigma computed - Global sigma_max = 2.22053 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.15969 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000595178 mm. 555: Global sigma computed - Global sigma_max = 2.15969 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: sigma_img: 41 41 302 555: dim: 41 41 302 555: Sigma patient computed - sigma_pt_max = 2.14863 mm. 555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 555: Sigma range compensator computed - sigma_rc_max = 0.000603663 mm. 555: Global sigma computed - Global sigma_max = 2.14863 mm. 555: Setting RVRTS = 1 555: FPD = 347.500001, BPD = 649.116731 555: 41 41 302 555: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. 555: Dose normalized at the maximum to 1 x 100%. 555: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 555: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha 555: Sigma: 0.097980 seconds 555: Calc: 1.051790 seconds 555: IO: 0.020643 seconds 555: Reformat: 0.009199 seconds 555: Misc: 0.007811 seconds 555: done. 555: 555: Total execution time : 1.187594 seconds. 555: 555: STDERR: 555: Not an error 180/571 Test #555: proton-dose-4d ........................ Passed 1.24 sec test 53 Start 53: rectarr-02 53: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-02" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5" "-P" "/<>/cmake/RUN_CTEST.cmake" 53: Test timeout computed to be: 1500 53: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 53: PARMS is synth;--input;/<>/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5 53: EXPECTED_ERRNO is 52: RETVAL: 0 52: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 52: 52: STDERR: 52: Not an error 181/571 Test #52: rectarr-01 ............................ Passed 0.07 sec test 54 Start 54: rectarr-m-01 54: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-01" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13" "-P" "/<>/cmake/RUN_CTEST.cmake" 54: Test timeout computed to be: 1500 54: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 54: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13 54: EXPECTED_ERRNO is 53: RETVAL: 0 53: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 53: 53: STDERR: 53: Not an error 182/571 Test #53: rectarr-02 ............................ Passed 0.08 sec test 55 Start 55: rectarr-m-02 55: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-02" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13" "-P" "/<>/cmake/RUN_CTEST.cmake" 55: Test timeout computed to be: 1500 55: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 55: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13 55: EXPECTED_ERRNO is 54: RETVAL: 0 54: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 54: 54: STDERR: 54: Not an error 183/571 Test #54: rectarr-m-01 .......................... Passed 0.07 sec test 60 Start 60: roi-1 60: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=roi-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300" "-P" "/<>/cmake/RUN_CTEST.cmake" 60: Test timeout computed to be: 1500 60: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 60: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300 60: EXPECTED_ERRNO is 55: RETVAL: 0 55: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha 55: 55: STDERR: 55: Not an error 184/571 Test #55: rectarr-m-02 .......................... Passed 0.07 sec test 64 Start 64: sphere-4 64: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-4" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150" "-P" "/<>/cmake/RUN_CTEST.cmake" 64: Test timeout computed to be: 1500 64: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 64: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150 64: EXPECTED_ERRNO is 60: RETVAL: 0 60: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/roi-1.mha 60: 60: STDERR: 60: Not an error 185/571 Test #60: roi-1 ................................. Passed 0.05 sec test 76 Start 76: vf-zero-stats 76: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 76: Test timeout computed to be: 1500 76: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 76: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/vf-zero.mha 76: EXPECTED_ERRNO is 64: RETVAL: 0 64: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/sphere-4.mha 64: 64: STDERR: 64: Not an error 186/571 Test #64: sphere-4 .............................. Passed 0.06 sec test 78 Start 78: vf-trans-1-stats 78: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 78: Test timeout computed to be: 1500 78: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 78: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 78: EXPECTED_ERRNO is 76: RETVAL: 0 76: STDOUT: Min: 0.000 0.000 0.000 76: Mean: 0.000 0.000 0.000 76: Max: 0.000 0.000 0.000 76: Mean abs: 0.000 0.000 0.000 76: Ave len: 0.000 76: Jacobian: MINJAC 1 MAXJAC 1 76: Energy: MINDIL 0 MAXDIL 0 76: MAXSTRAIN 0 TOTSTRAIN 0 76: Second derivatives: MINSECDER 0 MAXSECDER 0 76: AVESECDER 0 INTSECDER 0 76: Max second derivative at: (1 1 1) 76: 76: STDERR: 76: Not an error 187/571 Test #76: vf-zero-stats ......................... Passed 0.07 sec test 80 Start 80: vf-trans-2-stats 80: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 80: Test timeout computed to be: 1500 80: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 80: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 80: EXPECTED_ERRNO is 78: RETVAL: 0 78: STDOUT: Min: 10.000 0.000 0.000 78: Mean: 10.000 0.000 0.000 78: Max: 10.000 0.000 0.000 78: Mean abs: 10.000 0.000 0.000 78: Ave len: 10.000 78: Jacobian: MINJAC 1 MAXJAC 1 78: Energy: MINDIL 0 MAXDIL 0 78: MAXSTRAIN 0 TOTSTRAIN 0 78: Second derivatives: MINSECDER 0 MAXSECDER 0 78: AVESECDER 0 INTSECDER 0 78: Max second derivative at: (1 1 1) 78: 78: STDERR: 78: Not an error 188/571 Test #78: vf-trans-1-stats ...................... Passed 0.07 sec test 82 Start 82: vf-radial-1-stats 82: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 82: Test timeout computed to be: 1500 82: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 82: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha 82: EXPECTED_ERRNO is 80: RETVAL: 0 80: STDOUT: Min: 0.000 10.000 0.000 80: Mean: 0.000 10.000 0.000 80: Max: 0.000 10.000 0.000 80: Mean abs: 0.000 10.000 0.000 80: Ave len: 10.000 80: Jacobian: MINJAC 1 MAXJAC 1 80: Energy: MINDIL 0 MAXDIL 0 80: MAXSTRAIN 0 TOTSTRAIN 0 80: Second derivatives: MINSECDER 0 MAXSECDER 0 80: AVESECDER 0 INTSECDER 0 80: Max second derivative at: (1 1 1) 80: 80: STDERR: 80: Not an error 189/571 Test #80: vf-trans-2-stats ...................... Passed 0.07 sec test 84 Start 84: plm-compare-a 84: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 84: Test timeout computed to be: 1500 84: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 84: PARMS is compare;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 84: EXPECTED_ERRNO is 82: RETVAL: 0 82: STDOUT: Min: -9.993 -9.993 -9.993 82: Mean: 0.000 0.000 0.000 82: Max: 9.993 9.993 9.993 82: Mean abs: 5.157 5.157 5.157 82: Ave len: 9.998 82: Jacobian: MINJAC 1.05079 MAXJAC 2.37037 82: Energy: MINDIL 0.0502 MAXDIL 1 82: MAXSTRAIN 1.5 TOTSTRAIN 5055.08 82: Second derivatives: MINSECDER 0 MAXSECDER 0.114 82: AVESECDER 0.000227 INTSECDER 2.84e+04 82: Max second derivative at: (20 19 17) 82: 82: STDERR: 82: Not an error 190/571 Test #82: vf-radial-1-stats ..................... Passed 0.07 sec test 86 Start 86: plm-compare-b 86: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 86: Test timeout computed to be: 1500 86: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 86: PARMS is compare;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 86: EXPECTED_ERRNO is 84: RETVAL: 0 84: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 84: MAE 85.100204 MSE 18945.890625 84: DIF 54872 NUM 54872 84: 84: STDERR: 84: Not an error 191/571 Test #84: plm-compare-a ......................... Passed 0.07 sec test 88 Start 88: plm-compare-c 88: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;--mask;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 88: Test timeout computed to be: 1500 88: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 88: PARMS is compare;--mask;/<>/obj-x86_64-linux-gnu/Testing/rect-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 88: EXPECTED_ERRNO is 86: RETVAL: 0 86: STDOUT: Min: 10.000 -10.000 0.000 86: Mean: 10.000 -10.000 0.000 86: Max: 10.000 -10.000 0.000 86: Mean abs: 10.000 10.000 0.000 86: Ave len: 14.142 86: 86: STDERR: 86: Not an error 192/571 Test #86: plm-compare-b ......................... Passed 0.07 sec test 91 Start 91: plm-diff-a-stats 91: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 91: Test timeout computed to be: 1500 91: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 91: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha 91: EXPECTED_ERRNO is 88: RETVAL: 0 88: STDOUT: Mask enabled. 512 / 54872 voxels inside mask 88: Min: 10.000 -10.000 0.000 88: Mean: 10.000 -10.000 0.000 88: Max: 10.000 -10.000 0.000 88: Mean abs: 10.000 10.000 0.000 88: Ave len: 14.142 88: Min (mask): 10.000 -10.000 0.000 88: Mean (mask): 10.000 -10.000 0.000 88: Max (mask): 10.000 -10.000 0.000 88: Mean abs (mask): 10.000 10.000 0.000 88: Ave len (mask): 14.142 88: 88: STDERR: 88: Not an error 193/571 Test #88: plm-compare-c ......................... Passed 0.08 sec test 94 Start 94: plm-diff-b-stats 94: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 94: Test timeout computed to be: 1500 94: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 94: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 94: EXPECTED_ERRNO is 91: RETVAL: 0 91: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872 91: 91: STDERR: 91: Not an error 194/571 Test #91: plm-diff-a-stats ...................... Passed 0.07 sec test 96 Start 96: demons-a 96: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=demons-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/demons" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=-m;50;-s;3;-f;5 5 5;-O;/<>/obj-x86_64-linux-gnu/Testing/demons-a.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 96: Test timeout computed to be: 1500 96: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/demons 96: PARMS is -m;50;-s;3;-f;5 5 5;-O;/<>/obj-x86_64-linux-gnu/Testing/demons-a.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 96: EXPECTED_ERRNO is 94: RETVAL: 0 94: STDOUT: Min: 10.000 -10.000 0.000 94: Mean: 10.000 -10.000 0.000 94: Max: 10.000 -10.000 0.000 94: Mean abs: 10.000 10.000 0.000 94: Ave len: 14.142 94: Jacobian: MINJAC 1 MAXJAC 1 94: Energy: MINDIL 0 MAXDIL 0 94: MAXSTRAIN 0 TOTSTRAIN 0 94: Second derivatives: MINSECDER 0 MAXSECDER 0 94: AVESECDER 0 INTSECDER 0 94: Max second derivative at: (1 1 1) 94: 94: STDERR: 94: Not an error 195/571 Test #94: plm-diff-b-stats ...................... Passed 0.07 sec test 99 Start 99: drr-a-stats 99: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm" "-P" "/<>/cmake/RUN_CTEST.cmake" 99: Test timeout computed to be: 1500 99: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 99: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm 99: EXPECTED_ERRNO is 99: RETVAL: 0 99: STDOUT: Image center: 63.5 63.5 99: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 99: MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384 99: 99: STDERR: 99: Not an error 196/571 Test #99: drr-a-stats ........................... Passed 0.05 sec test 102 Start 102: drr-b-stats 102: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-b/out_0010.pfm" "-P" "/<>/cmake/RUN_CTEST.cmake" 102: Test timeout computed to be: 1500 102: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 102: PARMS is stats;drr-b/out_0010.pfm 102: EXPECTED_ERRNO is 561: RETVAL: 0 561: STDOUT: 561: [PLAN] 561: patient : /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 561: target : /<>/obj-x86_64-linux-gnu/Testing/ptv-1.mha 561: dose_out : /<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha 561: debug : 0 561: dose norm : 100 561: 561: [SETTINGS] 561: flavor: d ** 561: homo_approx: n ** 561: ray_step: 1 ** 561: aperture_out: ** 561: proj_dose_out: ** 561: proj_img_out: ** 561: range_comp_out: ** 561: sigma_out: ** 561: wed_out: ** 561: beam_weight: 1 ** 561: 561: [GEOMETRY & APERTURE] 561: source: 0 -2000 0 ** 561: isocenter: 0 0 0 ** 561: vup: 0 0 1 ** 561: offset: 1500 ** 561: ap_center in pixels: 20 20 ** 561: i_res: 41 41 ** 561: spacing: 3.75 3.75 ** 561: source_size: 0 ** 561: ap_file_in: ** 561: rc_file_in: ** 561: smearing: 5 ** 561: 561: [PEAK] 561: E0: P0 561: spread: P0 561: weight: P0 561: 561: Start dose calculation Beam 1 561: Plan_calc::compute_beam_dose(beam) entry -- 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: Priority 5. Target detected. 561: Compute target wepl_min_max... 561: Apply lateral smearing to the target... 561: Smearing = 5.000000, Smearing_ap = 3.750000 561: Strel size = (1,1), (3,3) 561: 0 1 0 561: 1 1 1 561: 0 1 0 561: Apply proximal and distal ... 561: Compute max wed... 561: Compute the aperture... 561: Max wed in the target is 117.554 mm. 561: Min wed in the target is 88.5523 mm. 561: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. 561: Min and max energies for treating the PTV: 109 MeV and 130 MeV. 561: 561: 22 Mono-energetic BP used: 561: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 561: Optimization of the particle number map for any mono-energetic slice in progress... 561: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.87445 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.87445 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.86823 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.86823 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.81247 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.81247 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.80639 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.80639 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.74919 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.74919 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.69289 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.69289 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.68596 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.68596 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.62886 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.62886 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.57127 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.57127 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.56307 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.56307 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.50537 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.50537 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.49685 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.49685 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.4384 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.4384 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.42949 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.42949 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.37035 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.37035 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.36098 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.36098 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.30119 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.30119 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.29132 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.29132 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.23096 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.23096 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.22053 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.22053 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.15969 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.15969 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: sigma_img: 41 41 302 561: dim: 41 41 302 561: Sigma patient computed - sigma_pt_max = 2.14863 mm. 561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 561: Sigma range compensator computed - sigma_rc_max = 0 mm. 561: Global sigma computed - Global sigma_max = 2.14863 mm. 561: Setting RVRTS = 1 561: FPD = 347.500001, BPD = 649.116731 561: 41 41 302 561: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. 561: Dose normalized at the maximum to 1 x 100%. 561: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 561: Trying to write mebs in /<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d-pn.txt 561: Ap 41 41 561: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha 561: Sigma: 0.096756 seconds 561: Calc: 1.114972 seconds 561: IO: 0.036376 seconds 561: Reformat: 0.008839 seconds 561: Misc: 0.008000 seconds 561: done. 561: 561: Total execution time : 1.265101 seconds. 561: 561: STDERR: 561: Not an error 197/571 Test #561: proton-dose-5d ........................ Passed 1.31 sec test 105 Start 105: drr-c-stats 105: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-c/out_0010.pfm" "-P" "/<>/cmake/RUN_CTEST.cmake" 105: Test timeout computed to be: 1500 105: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 105: PARMS is stats;drr-c/out_0010.pfm 105: EXPECTED_ERRNO is 102: RETVAL: 0 102: STDOUT: Image center: 63.5 63.5 102: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 102: MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384 102: 102: STDERR: 102: Not an error 198/571 Test #102: drr-b-stats ........................... Passed 0.05 sec test 108 Start 108: fdk-cpu-a-stats 108: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 108: Test timeout computed to be: 1500 108: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 108: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha 108: EXPECTED_ERRNO is 105: RETVAL: 0 105: STDOUT: Image center: 63.5 63.5 105: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 105: MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384 105: 105: STDERR: 105: Not an error 199/571 Test #105: drr-c-stats ........................... Passed 0.05 sec test 111 Start 111: fdk-cpu-d-stats 111: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 111: Test timeout computed to be: 1500 96: RETVAL: 0 96: STDOUT: Fixed = /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 96: Moving = /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 96: 96: Reading the static/reference image 96: reading /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 96: 96: Reading the moving image 96: reading /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 96: volume_calc_grad complete. 96: kerx: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 96: kery: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 96: kerz: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 96: MSE [ 0] 18945.6 (1.000) [ 0.004 secs] 96: MSE [ 1] 18945.6 (1.000) [ 0.003 secs] 96: MSE [ 2] 18980.9 (0.995) [ 0.003 secs] 96: MSE [ 3] 18885.4 (0.970) [ 0.002 secs] 96: MSE [ 4] 18084.9 (0.966) [ 0.002 secs] 96: MSE [ 5] 17034.7 (0.966) [ 0.003 secs] 96: MSE [ 6] 15346.9 (0.946) [ 0.002 secs] 96: MSE [ 7] 14427.2 (0.940) [ 0.002 secs] 96: MSE [ 8] 13561.7 (0.935) [ 0.002 secs] 96: MSE [ 9] 12732.2 (0.928) [ 0.002 secs] 96: MSE [ 10] 12276.6 (0.923) [ 0.003 secs] 96: MSE [ 11] 11827.4 (0.920) [ 0.002 secs] 96: MSE [ 12] 11399.6 (0.920) [ 0.003 secs] 96: MSE [ 13] 11078.4 (0.919) [ 0.002 secs] 96: MSE [ 14] 10787.4 (0.918) [ 0.003 secs] 96: MSE [ 15] 10317.6 (0.915) [ 0.003 secs] 96: MSE [ 16] 9735.2 (0.913) [ 0.002 secs] 96: MSE [ 17] 9362.8 (0.911) [ 0.002 secs] 96: MSE [ 18] 8947.5 (0.909) [ 0.003 secs] 96: MSE [ 19] 8534.4 (0.899) [ 0.002 secs] 96: MSE [ 20] 7953.5 (0.895) [ 0.002 secs] 96: MSE [ 21] 7656.6 (0.893) [ 0.002 secs] 96: MSE [ 22] 7364.0 (0.892) [ 0.002 secs] 96: MSE [ 23] 7174.2 (0.892) [ 0.002 secs] 96: MSE [ 24] 6956.3 (0.891) [ 0.002 secs] 96: MSE [ 25] 6512.1 (0.890) [ 0.002 secs] 96: MSE [ 26] 6079.0 (0.890) [ 0.002 secs] 96: MSE [ 27] 5716.1 (0.889) [ 0.002 secs] 96: MSE [ 28] 5454.8 (0.889) [ 0.002 secs] 96: MSE [ 29] 5201.5 (0.889) [ 0.002 secs] 96: MSE [ 30] 5013.3 (0.888) [ 0.002 secs] 96: MSE [ 31] 4840.3 (0.888) [ 0.002 secs] 96: MSE [ 32] 4652.0 (0.887) [ 0.002 secs] 96: MSE [ 33] 4400.6 (0.886) [ 0.002 secs] 96: MSE [ 34] 4085.1 (0.883) [ 0.002 secs] 96: MSE [ 35] 3778.0 (0.882) [ 0.002 secs] 96: MSE [ 36] 3521.6 (0.882) [ 0.002 secs] 96: MSE [ 37] 3308.2 (0.882) [ 0.002 secs] 96: MSE [ 38] 3126.2 (0.881) [ 0.002 secs] 96: MSE [ 39] 2988.9 (0.881) [ 0.002 secs] 96: MSE [ 40] 2836.4 (0.880) [ 0.002 secs] 96: MSE [ 41] 2736.6 (0.881) [ 0.002 secs] 96: MSE [ 42] 2623.3 (0.880) [ 0.002 secs] 96: MSE [ 43] 2426.1 (0.880) [ 0.002 secs] 96: MSE [ 44] 2271.4 (0.879) [ 0.002 secs] 96: MSE [ 45] 2112.0 (0.880) [ 0.002 secs] 96: MSE [ 46] 1926.2 (0.879) [ 0.002 secs] 96: MSE [ 47] 1775.3 (0.880) [ 0.002 secs] 96: MSE [ 48] 1621.0 (0.878) [ 0.002 secs] 96: MSE [ 49] 1504.3 (0.878) [ 0.002 secs] 96: Time for 50 iterations = 0.122347 (0.002447 sec / it) 96: Min: 1.248 -5.701 -5.701 96: Mean: 3.443 0.016 0.016 96: Max: 7.379 5.617 5.617 96: Mean abs: 3.443 1.874 1.874 96: Ave len: 4.646 96: Direction cosines: vin = 1.000000 0.000000 0.000000 ... 96: vf = 1.000000 0.000000 0.000000 ... 96: spac: vin = 1.315789 1.315789 1.315789 ... 96: vf = 1.315789 1.315789 1.315789 ... 96: proj: vin = 0.760000 -0.000000 0.000000 ... 96: vf = 0.760000 -0.000000 0.000000 ... 96: step: vin = 1.315789 0.000000 0.000000 ... 96: vf = 1.315789 0.000000 0.000000 ... 96: 96: STDERR: 96: Not an error 200/571 Test #96: demons-a .............................. Passed 0.17 sec test 114 Start 114: landmark-warp-a-stats-1 114: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 114: Test timeout computed to be: 1500 111: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 111: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha 111: EXPECTED_ERRNO is 114: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 114: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha 114: EXPECTED_ERRNO is 108: RETVAL: 0 108: STDOUT: MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 108: 108: STDERR: 108: Not an error 201/571 Test #108: fdk-cpu-a-stats ....................... Passed 0.10 sec test 116 Start 116: landmark-warp-a-stats-2 116: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 116: Test timeout computed to be: 1500 116: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 116: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha 116: EXPECTED_ERRNO is 114: RETVAL: 0 114: STDOUT: MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872 114: 114: STDERR: 114: Not an error 202/571 Test #114: landmark-warp-a-stats-1 ............... Passed 0.07 sec test 119 Start 119: landmark-warp-b-stats-1 119: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 119: Test timeout computed to be: 1500 119: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 119: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha 119: EXPECTED_ERRNO is 111: RETVAL: 0 111: STDOUT: MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 111: 111: STDERR: 111: Not an error 203/571 Test #111: fdk-cpu-d-stats ....................... Passed 0.10 sec test 121 Start 121: landmark-warp-b-stats-2 121: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 121: Test timeout computed to be: 1500 121: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 121: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha 121: EXPECTED_ERRNO is 564: RETVAL: 0 564: STDOUT: 564: [PLAN] 564: patient : /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 564: target : /<>/obj-x86_64-linux-gnu/Testing/ptv-2.mha 564: dose_out : /<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha 564: debug : 0 564: dose norm : 100 564: 564: [SETTINGS] 564: flavor: a ** 564: homo_approx: n ** 564: ray_step: 1 ** 564: aperture_out: ** 564: proj_dose_out: ** 564: proj_img_out: ** 564: range_comp_out: ** 564: sigma_out: ** 564: wed_out: ** 564: beam_weight: 1 ** 564: 564: [GEOMETRY & APERTURE] 564: source: 0 -2000 0 ** 564: isocenter: 0 0 0 ** 564: vup: 0 0 1 ** 564: offset: 1500 ** 564: ap_center in pixels: 20 20 ** 564: i_res: 41 41 ** 564: spacing: 3.75 3.75 ** 564: source_size: 0 ** 564: ap_file_in: ** 564: rc_file_in: ** 564: smearing: 5 ** 564: 564: [PEAK] 564: E0: P0 564: spread: P0 564: weight: P0 564: 564: Start dose calculation Beam 1 564: Plan_calc::compute_beam_dose(beam) entry -- 564: Setting RVRTS = 1 564: FPD = 347.500001, BPD = 649.116731 564: 41 41 302 564: Setting RVRTS = 1 564: FPD = 347.500001, BPD = 649.116731 564: 41 41 302 564: Setting RVRTS = 1 564: FPD = 347.500001, BPD = 649.116731 564: 41 41 302 564: Priority 5. Target detected. 564: Compute target wepl_min_max... 564: Apply lateral smearing to the target... 564: Smearing = 5.000000, Smearing_ap = 3.750000 564: Strel size = (1,1), (3,3) 564: 0 1 0 564: 1 1 1 564: 0 1 0 564: Apply proximal and distal ... 564: Compute max wed... 564: Compute the aperture... 564: Max wed in the target is 117.554 mm. 564: Min wed in the target is 88.5523 mm. 564: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. 564: Min and max energies for treating the PTV: 109 MeV and 130 MeV. 564: 564: 22 Mono-energetic BP used: 564: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 564: Optimization of the particle number map for any mono-energetic slice in progress... 564: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] 564: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. 564: Dose normalized at the maximum to 1 x 100%. 564: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 564: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha 564: Sigma: 0.000000 seconds 564: Calc: 0.956206 seconds 564: IO: 0.022335 seconds 564: Reformat: 0.000000 seconds 564: Misc: 0.004921 seconds 564: done. 564: 564: Total execution time : 1.000699 seconds. 564: 564: STDERR: 564: Not an error 204/571 Test #564: proton-dose-6a ........................ Passed 1.06 sec test 124 Start 124: landmark-warp-c-stats-1 124: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 124: Test timeout computed to be: 1500 116: RETVAL: 0 116: STDOUT: Min: -62.465 -4.112 -0.000 116: Mean: -22.960 0.011 0.000 116: Max: 16.278 4.199 0.000 116: Mean abs: 25.589 1.505 0.000 116: Ave len: 25.766 116: Jacobian: MINJAC 1.12686 MAXJAC 1.15895 116: Energy: MINDIL 0.128 MAXDIL 0.157995 116: MAXSTRAIN 0.171 TOTSTRAIN 7133.92 116: Second derivatives: MINSECDER 2.92e-10 MAXSECDER 0.000557 116: AVESECDER 7.93e-07 INTSECDER 99.2 116: Max second derivative at: (24 15 22) 116: 116: STDERR: 116: Not an error 205/571 Test #116: landmark-warp-a-stats-2 ............... Passed 0.07 sec test 126 Start 126: landmark-warp-c-stats-2 126: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 126: Test timeout computed to be: 1500 124: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 124: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha 124: EXPECTED_ERRNO is 126: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 126: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha 126: EXPECTED_ERRNO is 119: RETVAL: 0 119: STDOUT: MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872 119: 119: STDERR: 119: Not an error 206/571 Test #119: landmark-warp-b-stats-1 ............... Passed 0.07 sec test 130 Start 130: plm-add-a-stats 130: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 130: Test timeout computed to be: 1500 130: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 130: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd 130: EXPECTED_ERRNO is 121: RETVAL: 0 121: STDOUT: Min: -30.672 -0.800 -0.000 121: Mean: -1.500 0.018 0.000 121: Max: 0.000 1.506 0.000 121: Mean abs: 1.500 0.042 0.000 121: Ave len: 1.502 121: Jacobian: MINJAC 0.647844 MAXJAC 1.23013 121: Energy: MINDIL -0.353 MAXDIL 0.231386 121: MAXSTRAIN 0.259 TOTSTRAIN 179.715 121: Second derivatives: MINSECDER 0 MAXSECDER 0.0443 121: AVESECDER 0.000472 INTSECDER 5.89e+04 121: Max second derivative at: (17 23 15) 121: 121: STDERR: 121: Not an error 207/571 Test #121: landmark-warp-b-stats-2 ............... Passed 0.07 sec test 133 Start 133: plm-add-b-stats 133: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 133: Test timeout computed to be: 1500 133: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 133: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd 133: EXPECTED_ERRNO is 124: RETVAL: 0 124: STDOUT: MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872 124: 124: STDERR: 124: Not an error 208/571 Test #124: landmark-warp-c-stats-1 ............... Passed 0.08 sec test 136 Start 136: plm-add-vf-a-stats 136: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 136: Test timeout computed to be: 1500 126: RETVAL: 0 126: STDOUT: Min: -27.760 -0.518 -0.000 126: Mean: -1.562 0.019 0.000 126: Max: -0.000 1.063 0.000 126: Mean abs: 1.562 0.037 0.000 126: Ave len: 1.563 126: Jacobian: MINJAC 0.698803 MAXJAC 1.18578 126: Energy: MINDIL -0.302 MAXDIL 0.186636 126: MAXSTRAIN 0.205 TOTSTRAIN 143.999 126: Second derivatives: MINSECDER 2.31e-17 MAXSECDER 0.0141 126: AVESECDER 0.000315 INTSECDER 3.94e+04 126: Max second derivative at: (17 22 16) 126: 126: STDERR: 126: Not an error 209/571 Test #126: landmark-warp-c-stats-2 ............... Passed 0.07 sec test 139 Start 139: plm-add-vf-b-stats 139: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 139: Test timeout computed to be: 1500 136: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 136: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd 136: EXPECTED_ERRNO is 139: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 139: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd 139: EXPECTED_ERRNO is 130: RETVAL: 0 130: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 130: 130: STDERR: 130: Not an error 210/571 Test #130: plm-add-a-stats ....................... Passed 0.07 sec test 142 Start 142: plm-adjust-a-stats 142: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 142: Test timeout computed to be: 1500 142: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 142: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd 142: EXPECTED_ERRNO is 133: RETVAL: 0 133: STDOUT: MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872 133: 133: STDERR: 133: Not an error 211/571 Test #133: plm-add-b-stats ....................... Passed 0.07 sec test 145 Start 145: plm-adjust-b-stats 145: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 145: Test timeout computed to be: 1500 145: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 145: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd 145: EXPECTED_ERRNO is 139: RETVAL: 0 139: STDOUT: Min: 5.000 5.000 0.000 139: Mean: 5.000 5.000 0.000 139: Max: 5.000 5.000 0.000 139: Mean abs: 5.000 5.000 0.000 139: Ave len: 7.071 139: Jacobian: MINJAC 1 MAXJAC 1 139: Energy: MINDIL 0 MAXDIL 0 139: MAXSTRAIN 0 TOTSTRAIN 0 139: Second derivatives: MINSECDER 0 MAXSECDER 0 139: AVESECDER 0 INTSECDER 0 139: Max second derivative at: (1 1 1) 139: 139: STDERR: 139: Not an error 212/571 Test #139: plm-add-vf-b-stats .................... Passed 0.07 sec test 148 Start 148: plm-adjust-c-stats 148: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 148: Test timeout computed to be: 1500 136: RETVAL: 0 136: STDOUT: Min: 20.000 0.000 0.000 136: Mean: 20.000 0.000 0.000 136: Max: 20.000 0.000 0.000 136: Mean abs: 20.000 0.000 0.000 136: Ave len: 20.000 136: Jacobian: MINJAC 1 MAXJAC 1 136: Energy: MINDIL 0 MAXDIL 0 136: MAXSTRAIN 0 TOTSTRAIN 0 136: Second derivatives: MINSECDER 0 MAXSECDER 0 136: AVESECDER 0 INTSECDER 0 136: Max second derivative at: (1 1 1) 136: 136: STDERR: 136: Not an error 213/571 Test #136: plm-add-vf-a-stats .................... Passed 0.08 sec test 151 Start 151: plm-adjust-d-stats 151: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 151: Test timeout computed to be: 1500 148: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 148: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd 148: EXPECTED_ERRNO is 142: RETVAL: 0 142: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 142: 142: STDERR: 142: Not an error 214/571 Test #142: plm-adjust-a-stats .................... Passed 0.07 sec test 154 Start 154: plm-adjust-e-stats 154: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 154: Test timeout computed to be: 1500 154: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 154: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd 154: EXPECTED_ERRNO is 151: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 151: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd 151: EXPECTED_ERRNO is 145: RETVAL: 0 145: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 145: 145: STDERR: 145: Not an error 215/571 Test #145: plm-adjust-b-stats .................... Passed 0.07 sec test 157 Start 157: plm-adjust-f-stats 157: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 157: Test timeout computed to be: 1500 157: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 157: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd 157: EXPECTED_ERRNO is 148: RETVAL: 0 148: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 148: 148: STDERR: 148: Not an error 216/571 Test #148: plm-adjust-c-stats .................... Passed 0.08 sec test 160 Start 160: plm-adjust-g-stats 160: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 160: Test timeout computed to be: 1500 151: RETVAL: 0 151: STDOUT: MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872 151: 151: STDERR: 151: Not an error 217/571 Test #151: plm-adjust-d-stats .................... Passed 0.08 sec test 163 Start 163: plm-adjust-h-stats 163: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 163: Test timeout computed to be: 1500 160: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 160: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd 160: EXPECTED_ERRNO is 154: RETVAL: 0 154: STDOUT: MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872 154: 154: STDERR: 154: Not an error 218/571 Test #154: plm-adjust-e-stats .................... Passed 0.08 sec test 166 Start 166: plm-adjust-i-stats 166: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 166: Test timeout computed to be: 1500 163: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 163: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd 163: EXPECTED_ERRNO is 166: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 166: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd 166: EXPECTED_ERRNO is 157: RETVAL: 0 157: STDOUT: MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872 157: 157: STDERR: 157: Not an error 219/571 Test #157: plm-adjust-f-stats .................... Passed 0.07 sec test 169 Start 169: plm-adjust-j-stats 169: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 169: Test timeout computed to be: 1500 169: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 169: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd 169: EXPECTED_ERRNO is 160: RETVAL: 0 160: STDOUT: MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872 160: 160: STDERR: 160: Not an error 220/571 Test #160: plm-adjust-g-stats .................... Passed 0.08 sec test 172 Start 172: plm-boundary-a-stats 172: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 172: Test timeout computed to be: 1500 166: RETVAL: 0 166: STDOUT: MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872 166: 166: STDERR: 166: Not an error 221/571 Test #166: plm-adjust-i-stats .................... Passed 0.07 sec test 175 Start 175: plm-boundary-b-stats 175: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 175: Test timeout computed to be: 1500 172: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 172: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd 172: EXPECTED_ERRNO is 163: RETVAL: 0 163: STDOUT: MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872 163: 163: STDERR: 163: Not an error 222/571 Test #163: plm-adjust-h-stats .................... Passed 0.08 sec test 178 Start 178: plm-boundary-c-stats 178: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 178: Test timeout computed to be: 1500 175: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 175: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd 175: EXPECTED_ERRNO is 178: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 178: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd 178: EXPECTED_ERRNO is 169: RETVAL: 0 169: STDOUT: MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872 169: 169: STDERR: 169: Not an error 223/571 Test #169: plm-adjust-j-stats .................... Passed 0.07 sec test 181 Start 181: plm-boundary-d-stats 181: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 181: Test timeout computed to be: 1500 181: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 181: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd 181: EXPECTED_ERRNO is 172: RETVAL: 0 172: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 172: 172: STDERR: 172: Not an error 224/571 Test #172: plm-boundary-a-stats .................. Passed 0.07 sec test 184 Start 184: plm-boundary-e-stats 184: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 184: Test timeout computed to be: 1500 175: RETVAL: 0 175: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 175: 175: STDERR: 175: Not an error 225/571 Test #175: plm-boundary-b-stats .................. Passed 0.07 sec test 187 Start 187: plm-convert-dicom-a-stats 187: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 187: Test timeout computed to be: 1500 184: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 184: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd 184: EXPECTED_ERRNO is 187: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 187: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha 187: EXPECTED_ERRNO is 178: RETVAL: 0 178: STDOUT: MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000 178: 178: STDERR: 178: Not an error 226/571 Test #178: plm-boundary-c-stats .................. Passed 0.07 sec test 190 Start 190: plm-convert-dicom-b-stats 190: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/dicom_info" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=--input;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm" "-P" "/<>/cmake/RUN_CTEST.cmake" 190: Test timeout computed to be: 1500 181: RETVAL: 0 181: STDOUT: MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000 181: 181: STDERR: 181: Not an error 227/571 Test #181: plm-boundary-d-stats .................. Passed 0.07 sec test 193 Start 193: plm-convert-dicom-c-stats 193: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 193: Test timeout computed to be: 1500 190: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/dicom_info 190: PARMS is --input;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm 190: EXPECTED_ERRNO is 193: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 193: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha 193: EXPECTED_ERRNO is 190: RETVAL: 0 190: STDOUT: Reading input file: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm 190: Image Type = DERIVED\SECONDARY\AXIAL 190: Instance Creation Date = 20220801 190: Instance Creation Time = 232604 190: SOP Class UID = 1.2.840.10008.5.1.4.1.1.2 190: SOP Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.10544.1659396367.250535 190: Study Date = 20220801 190: Study Time = 232604 190: Accession Number = 190: Modality = CT 190: Manufacturer = Plastimatch 190: Referring Physician's Name = 190: Station Name = 190: Study Description = 190: Series Description = 190: Operators' Name = 190: Manufacturer's Model Name = Plastimatch 190: Patient's Name = ANONYMOUS 190: Patient ID = PL757867020270026 190: Patient's Birth Date = 190: Patient's Sex = O 190: Slice Thickness = 13.157895 190: KVP = 190: Device Serial Number = 190: Software Version(s) = 1.9.3 190: Patient Position = FFS 190: Study Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.10544.1659396367.250515 190: Series Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.10544.1659396367.250532 190: Study ID = 190: Acquisition Number = 190: Instance Number = 0 190: Image Position (Patient) = -243.421051\-243.421051\-243.421051 190: Image Orientation (Patient) = 1.000000\0.000000\0.000000\0.000000\1.000000\0.000000 190: Frame of Reference UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.10544.1659396367.250516 190: Position Reference Indicator = SP 190: Slice Location = -243.421051 190: Samples per Pixel = 1 190: Photometric Interpretation = MONOCHROME2 190: Rows = 38 190: Columns = 38 190: Pixel Spacing = 13.157895\13.157895 190: Bits Allocated = 16 190: Bits Stored = 16 190: High Bit = 15 190: Pixel Representation = 1 190: Window Center = 40 190: Window Width = 400 190: Rescale Intercept = -1000.000000 190: Rescale Slope = 1.000000 190: Rescale Type = HU 190: 190: STDERR: 190: Not an error 228/571 Test #190: plm-convert-dicom-b-stats ............. Passed 0.04 sec test 199 Start 199: plm-convert-dicom-donut-a-stats 199: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 199: Test timeout computed to be: 1500 199: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 199: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd 199: EXPECTED_ERRNO is 184: RETVAL: 0 184: STDOUT: MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000 184: 184: STDERR: 184: Not an error 229/571 Test #184: plm-boundary-e-stats .................. Passed 0.08 sec test 202 Start 202: plm-convert-dicom-donut-b-stats 202: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 202: Test timeout computed to be: 1500 202: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 202: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd 202: EXPECTED_ERRNO is 187: RETVAL: 0 187: STDOUT: SS_IMAGE: At most 16 structures 187: S 0 NVOX 1648003 187: S 1 NVOX 0 187: S 2 NVOX 0 187: S 3 NVOX 0 187: S 4 NVOX 0 187: S 5 NVOX 0 187: S 6 NVOX 0 187: S 7 NVOX 0 187: S 8 NVOX 0 187: S 9 NVOX 0 187: S 10 NVOX 0 187: S 11 NVOX 0 187: S 12 NVOX 0 187: S 13 NVOX 0 187: S 14 NVOX 0 187: S 15 NVOX 0 187: 187: STDERR: 187: Not an error 230/571 Test #187: plm-convert-dicom-a-stats ............. Passed 0.09 sec test 206 Start 206: plm-convert-cxt-stats 206: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 206: Test timeout computed to be: 1500 193: RETVAL: 0 193: STDOUT: MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000 193: 193: STDERR: 193: Not an error 206: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 206: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha 206: EXPECTED_ERRNO is 231/571 Test #193: plm-convert-dicom-c-stats ............. Passed 0.08 sec test 208 Start 208: plm-convert-prefix-fcsv 208: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-prefix-fcsv" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/<>/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5" "-P" "/<>/cmake/RUN_CTEST.cmake" 208: Test timeout computed to be: 1500 208: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 208: PARMS is convert;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/<>/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5 208: EXPECTED_ERRNO is 199: RETVAL: 0 199: STDOUT: SS_IMAGE: At most 16 structures 199: S 0 NVOX 2623 199: S 1 NVOX 0 199: S 2 NVOX 0 199: S 3 NVOX 0 199: S 4 NVOX 0 199: S 5 NVOX 0 199: S 6 NVOX 0 199: S 7 NVOX 0 199: S 8 NVOX 0 199: S 9 NVOX 0 199: S 10 NVOX 0 199: S 11 NVOX 0 199: S 12 NVOX 0 199: S 13 NVOX 0 199: S 14 NVOX 0 199: S 15 NVOX 0 199: 199: STDERR: 199: Not an error 232/571 Test #199: plm-convert-dicom-donut-a-stats ....... Passed 0.08 sec test 210 Start 210: plm-convert-dose-scale-stats 210: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 210: Test timeout computed to be: 1500 210: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 210: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha 210: EXPECTED_ERRNO is 202: RETVAL: 0 202: STDOUT: SS_IMAGE: At most 16 structures 202: S 0 NVOX 1924 202: S 1 NVOX 0 202: S 2 NVOX 0 202: S 3 NVOX 0 202: S 4 NVOX 0 202: S 5 NVOX 0 202: S 6 NVOX 0 202: S 7 NVOX 0 202: S 8 NVOX 0 202: S 9 NVOX 0 202: S 10 NVOX 0 202: S 11 NVOX 0 202: S 12 NVOX 0 202: S 13 NVOX 0 202: S 14 NVOX 0 202: S 15 NVOX 0 202: 202: STDERR: 202: Not an error 233/571 Test #202: plm-convert-dicom-donut-b-stats ....... Passed 0.08 sec test 213 Start 213: plm-crop-a-stats 213: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 213: Test timeout computed to be: 1500 213: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 213: PARMS is header;plm-crop-a.mha 213: EXPECTED_ERRNO is 206: RETVAL: 0 206: STDOUT: SS_IMAGE: At most 16 structures 206: S 0 NVOX 1648003 206: S 1 NVOX 0 206: S 2 NVOX 0 206: S 3 NVOX 0 206: S 4 NVOX 0 206: S 5 NVOX 0 206: S 6 NVOX 0 206: S 7 NVOX 0 206: S 8 NVOX 0 206: S 9 NVOX 0 206: S 10 NVOX 0 206: S 11 NVOX 0 206: S 12 NVOX 0 206: S 13 NVOX 0 206: S 14 NVOX 0 206: S 15 NVOX 0 206: 206: STDERR: 206: Not an error 234/571 Test #206: plm-convert-cxt-stats ................. Passed 0.09 sec test 216 Start 216: plm-crop-b-stats 216: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-b.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 216: Test timeout computed to be: 1500 208: RETVAL: 0 208: STDOUT: Trying to load ss_list: /<>/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt 208: Setting PIH from M_SS_IMG 208: PIH is: 208: Origin = -243.4211 -243.4211 -243.4211 208: Size = 38 38 38 208: Spacing = 13.1579 13.1579 13.1579 208: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 208: Rt_study_warp: Convert ss_img to cxt. 208: Doing extraction 208: Rt_study_warp: Apply dicom_dir. 208: Rt_study_warp: Set geometry from PIH. 208: Rt_study_warp: Set rasterization geometry. 208: rast_dim = 512 512 7 208: rast_offset = -55.2632 -55.2632 -46.0526 208: rast_spacing = 0.215872 0.215872 13.1579 208: Rt_study_warp: warp and save ss. 208: Warp_and_save_ss: save_ss_img 208: save_ss_img: save_prefix_fcsv 208: save_ss_img: save_prefix_fcsv (/<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv) 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (1).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (2).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (3).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (4).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (5).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (6).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (7).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (8).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (9).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (10).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (11).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (12).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (13).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (14).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (15).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (16).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (17).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (18).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (19).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (20).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (21).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (22).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (23).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (24).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (25).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (26).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (27).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (28).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (29).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (30).fcsv 208: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (31).fcsv 208: Finished! 208: 208: STDERR: 208: Not an error 235/571 Test #208: plm-convert-prefix-fcsv ............... Passed 0.09 sec test 219 Start 219: plm-crop-c-stats 219: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-c.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 219: Test timeout computed to be: 1500 216: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 216: PARMS is header;plm-crop-b.mha 216: EXPECTED_ERRNO is 219: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 219: PARMS is header;plm-crop-c.mha 219: EXPECTED_ERRNO is 210: RETVAL: 0 210: STDOUT: MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872 210: 210: STDERR: 210: Not an error 236/571 Test #210: plm-convert-dose-scale-stats .......... Passed 0.08 sec test 221 Start 221: plm-dice-a 221: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 221: Test timeout computed to be: 1500 221: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 221: PARMS is dice;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha 221: EXPECTED_ERRNO is 213: RETVAL: 0 213: STDOUT: Type = float 213: Planes = 1 213: Origin = -18.4211 -21.0526 -15.7895 213: Size = 11 16 3 213: Spacing = 1.3158 1.3158 1.3158 213: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 213: 213: STDERR: 213: Not an error 237/571 Test #213: plm-crop-a-stats ...................... Passed 0.07 sec test 223 Start 223: plm-dice-b 223: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-9.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 223: Test timeout computed to be: 1500 223: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 223: PARMS is dice;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-9.mha 223: EXPECTED_ERRNO is 216: RETVAL: 0 216: STDOUT: Type = float 216: Planes = 1 216: Origin = -14.4737 3.9474 -11.8421 216: Size = 19 11 4 216: Spacing = 1.3158 1.3158 1.3158 216: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 216: 216: STDERR: 216: Not an error 219: RETVAL: 0 219: STDOUT: Type = float 219: Planes = 1 219: Origin = -9.2105 -9.2105 -9.2105 219: Size = 15 15 15 219: Spacing = 1.3158 1.3158 1.3158 219: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 219: 219: STDERR: 238/571 Test #216: plm-crop-b-stats ...................... Passed 0.07 sec test 225 Start 225: plm-dice-c 225: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 225: Test timeout computed to be: 1500 219: Not an error 239/571 Test #219: plm-crop-c-stats ...................... Passed 0.07 sec test 231 Start 231: plm-dice-d 231: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/<>/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 231: Test timeout computed to be: 1500 221: RETVAL: 0 221: STDOUT: CENTER_OF_MASS 221: ref 4.18425e-05 7.62939e-06 7.62939e-06 221: cmp 19.7369 7.62939e-06 7.62939e-06 221: TP: 384 221: TN: 54296 221: FN: 128 221: FP: 64 221: DICE: 0.800000 221: SE: 0.750000 221: SP: 0.998823 221: 221: STDERR: 221: Not an error 240/571 Test #221: plm-dice-a ............................ Passed 0.06 sec test 237 Start 237: plm-dice-e 237: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;0 0;/<>/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/<>/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 237: Test timeout computed to be: 1500 225: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 225: PARMS is dice;--hausdorff;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha 225: EXPECTED_ERRNO is 231: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 237: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 237: PARMS is dice;--all;--zcrop;0 0;/<>/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/<>/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 237: EXPECTED_ERRNO is 231: PARMS is dice;--hausdorff;/<>/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/<>/obj-x86_64-linux-gnu/Testing/rect-8.mha 231: EXPECTED_ERRNO is 223: RETVAL: 0 223: STDOUT: Time = 0.001258 seconds 223: Time = 0.001227 seconds 223: CENTER_OF_MASS 223: ref 8.39233e-05 8.47711e-06 8.47711e-06 223: cmp 8.39233e-05 8.47711e-06 8.47711e-06 223: TP: 729 223: TN: 103094 223: FN: 0 223: FP: 0 223: DICE: 1.000000 223: SE: 1.000000 223: SP: 1.000000 223: 223: STDERR: 223: Not an error 241/571 Test #223: plm-dice-b ............................ Passed 0.09 sec test 240 Start 240: plm-dice-f 240: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-f" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;10 10;/<>/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/<>/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 240: Test timeout computed to be: 1500 240: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 240: PARMS is dice;--all;--zcrop;10 10;/<>/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/<>/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 240: EXPECTED_ERRNO is 225: RETVAL: 0 225: STDOUT: Hausdorff distance = 26.315790 225: Avg average Hausdorff distance = 3.406955 225: Max average Hausdorff distance = 4.934211 225: Percent (0.95) Hausdorff distance = 19.736843 225: Hausdorff distance (boundary) = 26.315790 225: Avg average Hausdorff distance (boundary) = 7.115030 225: Max average Hausdorff distance (boundary) = 8.534851 225: Percent (0.95) Hausdorff distance (boundary) = 26.315790 225: 225: STDERR: 225: Not an error 242/571 Test #225: plm-dice-c ............................ Passed 0.07 sec test 244 Start 244: plm-dmap-b 244: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;danielsson;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance" "-P" "/<>/cmake/RUN_CTEST.cmake" 244: Test timeout computed to be: 1500 231: RETVAL: 0 231: STDOUT: Hausdorff distance = 45.580288 231: Avg average Hausdorff distance = 7.072703 231: Max average Hausdorff distance = 12.121115 231: Percent (0.95) Hausdorff distance = 22.694012 231: Hausdorff distance (boundary) = 45.580288 231: Avg average Hausdorff distance (boundary) = 14.894061 231: Max average Hausdorff distance (boundary) = 18.384613 231: Percent (0.95) Hausdorff distance (boundary) = 32.894737 231: 231: STDERR: 231: Not an error 243/571 Test #231: plm-dice-d ............................ Passed 0.07 sec test 246 Start 246: plm-dvh-a 246: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-P" "/<>/cmake/RUN_CTEST.cmake" 246: Test timeout computed to be: 1500 244: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 244: PARMS is dmap;--algorithm;danielsson;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance 244: EXPECTED_ERRNO is 246: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 246: PARMS is dvh;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 246: EXPECTED_ERRNO is 237: RETVAL: 0 237: STDOUT: CENTER_OF_MASS 237: ref 0 0 7.5 237: cmp 0 0 5 237: TP: 22120 237: TN: 6300 237: FN: 1580 237: FP: 0 237: DICE: 0.965517 237: SE: 0.933333 237: SP: 1.000000 237: Hausdorff distance = 4.000000 237: Avg average Hausdorff distance = 0.067568 237: Max average Hausdorff distance = 0.135135 237: Percent (0.95) Hausdorff distance = 0.500000 237: Hausdorff distance (boundary) = 4.000000 237: Avg average Hausdorff distance (boundary) = 0.244043 237: Max average Hausdorff distance (boundary) = 0.334483 237: Percent (0.95) Hausdorff distance (boundary) = 2.500000 237: 237: STDERR: 237: Not an error 244/571 Test #237: plm-dice-e ............................ Passed 0.14 sec test 249 Start 249: plm-dvh-b 249: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-P" "/<>/cmake/RUN_CTEST.cmake" 249: Test timeout computed to be: 1500 246: RETVAL: 0 246: STDOUT: Creating Histogram... 246: Your Histogram will have 256 bins and will be 0.500000 Gy large 246: checking voxel size... 246: 13.1579 13.1579 13.1579 246: 13.1579 13.1579 13.1579 246: Dose and ss-img have the same size. Resample not necessary. 246: 246: STDERR: 246: Not an error 245/571 Test #246: plm-dvh-a ............................. Passed 0.09 sec test 253 Start 253: plm-fill-a-stats 253: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 253: Test timeout computed to be: 1500 240: RETVAL: 0 240: STDOUT: CENTER_OF_MASS 240: ref 0 0 7.5 240: cmp 0 0 7.5 240: TP: 17380 240: TN: 4620 240: FN: 0 240: FP: 0 240: DICE: 1.000000 240: SE: 1.000000 240: SP: 1.000000 240: Hausdorff distance = 0.000000 240: Avg average Hausdorff distance = 0.000000 240: Max average Hausdorff distance = 0.000000 240: Percent (0.95) Hausdorff distance = 0.000000 240: Hausdorff distance (boundary) = 0.000000 240: Avg average Hausdorff distance (boundary) = 0.000000 240: Max average Hausdorff distance (boundary) = 0.000000 240: Percent (0.95) Hausdorff distance (boundary) = 0.000000 240: 240: STDERR: 240: Not an error 246/571 Test #240: plm-dice-f ............................ Passed 0.10 sec test 256 Start 256: plm-mask-a-stats 256: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 256: Test timeout computed to be: 1500 249: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 249: PARMS is dvh;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/<>/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 249: EXPECTED_ERRNO is 253: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 253: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha 253: EXPECTED_ERRNO is 256: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 256: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha 256: EXPECTED_ERRNO is 244: RETVAL: 0 244: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha 244: 244: STDERR: 244: Not an error 247/571 Test #244: plm-dmap-b ............................ Passed 0.11 sec test 259 Start 259: plm-gamma-a-stats 259: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 259: Test timeout computed to be: 1500 259: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 259: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha 259: EXPECTED_ERRNO is 249: RETVAL: 0 249: STDOUT: Trying to load ss_list: /<>/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt 249: Creating Histogram... 249: Your Histogram will have 256 bins and will be 0.500000 Gy large 249: checking voxel size... 249: 13.1579 13.1579 13.1579 249: 13.1579 13.1579 13.1579 249: Dose and ss-img have the same size. Resample not necessary. 249: 249: STDERR: 249: Not an error 248/571 Test #249: plm-dvh-b ............................. Passed 0.08 sec test 262 Start 262: plm-gamma-b-stats 262: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 262: Test timeout computed to be: 1500 256: RETVAL: 0 256: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 256: 256: STDERR: 256: Not an error 249/571 Test #256: plm-mask-a-stats ...................... Passed 0.07 sec test 264 Start 264: plm-gamma-c 264: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/<>/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 264: Test timeout computed to be: 1500 262: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 262: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha 262: EXPECTED_ERRNO is 253: RETVAL: 0 253: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 253: 253: STDERR: 253: Not an error 250/571 Test #253: plm-fill-a-stats ...................... Passed 0.08 sec test 266 Start 266: plm-gamma-d 266: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/<>/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 266: Test timeout computed to be: 1500 264: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 264: PARMS is gamma;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/<>/obj-x86_64-linux-gnu/Testing/rectarr-04.mha 264: EXPECTED_ERRNO is 259: RETVAL: 0 259: STDOUT: MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000 259: 259: STDERR: 259: Not an error 251/571 Test #259: plm-gamma-a-stats ..................... Passed 0.07 sec test 269 Start 269: plm-maximum-a-stats 269: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 269: Test timeout computed to be: 1500 266: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 266: PARMS is gamma;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/<>/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/<>/obj-x86_64-linux-gnu/Testing/rectarr-04.mha 266: EXPECTED_ERRNO is 269: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 269: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd 269: EXPECTED_ERRNO is 262: RETVAL: 0 262: STDOUT: MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000 262: 262: STDERR: 262: Not an error 252/571 Test #262: plm-gamma-b-stats ..................... Passed 0.07 sec test 272 Start 272: plm-multiply-a-stats 272: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 272: Test timeout computed to be: 1500 272: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 272: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd 272: EXPECTED_ERRNO is 269: RETVAL: 0 269: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 269: 269: STDERR: 269: Not an error 253/571 Test #269: plm-maximum-a-stats ................... Passed 0.07 sec test 275 Start 275: plm-multiply-vf-a-stats 275: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 275: Test timeout computed to be: 1500 275: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 275: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd 275: EXPECTED_ERRNO is 264: RETVAL: 0 264: STDOUT: Gamma dose max is 70.000000 264: Time = 0.000496 seconds 264: Gamma calculation is under progress... 264: analysis threshold = 7.00 Gy 264: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha 264: Pass rate = 90.719998 % 264: 264: STDERR: 264: Not an error 254/571 Test #264: plm-gamma-c ........................... Passed 0.10 sec test 279 Start 279: plm-reg-align-center-stats 279: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 279: Test timeout computed to be: 1500 266: RETVAL: 0 266: STDOUT: Gamma dose max is 70.000000 266: Time = 0.001127 seconds 266: Gamma calculation is under progress... 266: analysis threshold = 7.00 Gy 266: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha 266: Pass rate = 89.999998 % 266: 266: STDERR: 266: Not an error 255/571 Test #266: plm-gamma-d ........................... Passed 0.10 sec test 282 Start 282: plm-reg-itk-translation-stats 282: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 282: Test timeout computed to be: 1500 279: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 279: PARMS is compare;/<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha 279: EXPECTED_ERRNO is 282: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 282: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha 282: EXPECTED_ERRNO is 272: RETVAL: 0 272: STDOUT: MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872 272: 272: STDERR: 272: Not an error 256/571 Test #272: plm-multiply-a-stats .................. Passed 0.07 sec test 285 Start 285: plm-reg-itk-rigid-a-stats-1 285: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 285: Test timeout computed to be: 1500 285: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 285: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha 285: EXPECTED_ERRNO is 275: RETVAL: 0 275: STDOUT: Min: 100.000 100.000 100.000 275: Mean: 100.000 100.000 100.000 275: Max: 100.000 100.000 100.000 275: Mean abs: 100.000 100.000 100.000 275: Ave len: 173.205 275: Jacobian: MINJAC 1 MAXJAC 1 275: Energy: MINDIL 0 MAXDIL 0 275: MAXSTRAIN 0 TOTSTRAIN 0 275: Second derivatives: MINSECDER 0 MAXSECDER 0 275: AVESECDER 0 INTSECDER 0 275: Max second derivative at: (1 1 1) 275: 275: STDERR: 275: Not an error 257/571 Test #275: plm-multiply-vf-a-stats ............... Passed 0.08 sec test 287 Start 287: plm-reg-itk-rigid-a-stats-2 287: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 287: Test timeout computed to be: 1500 287: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 287: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha 287: EXPECTED_ERRNO is 279: RETVAL: 0 279: STDOUT: MIN -0.000061 AVE 0.000001 MAX 0.000061 279: MAE 0.000002 MSE 0.000000 279: DIF 2274 NUM 54872 279: 279: STDERR: 279: Not an error 258/571 Test #279: plm-reg-align-center-stats ............ Passed 0.08 sec test 290 Start 290: plm-reg-itk-similarity-stats-1 290: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 290: Test timeout computed to be: 1500 282: RETVAL: 0 282: STDOUT: MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872 282: 282: STDERR: 282: Not an error 259/571 Test #282: plm-reg-itk-translation-stats ......... Passed 0.08 sec test 292 Start 292: plm-reg-itk-similarity-stats-2 292: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 292: Test timeout computed to be: 1500 290: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 290: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha 290: EXPECTED_ERRNO is 292: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 292: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha 292: EXPECTED_ERRNO is 285: RETVAL: 0 285: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 285: 285: STDERR: 285: Not an error 260/571 Test #285: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.07 sec test 295 Start 295: plm-reg-itk-bspline-stats-1 295: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 295: Test timeout computed to be: 1500 295: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 295: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha 295: EXPECTED_ERRNO is 287: RETVAL: 0 287: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 287: 287: STDERR: 287: Not an error 261/571 Test #287: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.07 sec test 299 Start 299: plm-reg-itk-demons-stats-2 299: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-stats-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 299: Test timeout computed to be: 1500 299: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 299: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha 299: EXPECTED_ERRNO is 290: RETVAL: 0 290: STDOUT: MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872 290: 290: STDERR: 290: Not an error 262/571 Test #290: plm-reg-itk-similarity-stats-1 ........ Passed 0.07 sec test 301 Start 301: plm-reg-itk-demons-diff 301: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-diff" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 301: Test timeout computed to be: 1500 301: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 301: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt 301: EXPECTED_ERRNO is 292: RETVAL: 0 292: STDOUT: MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872 292: 292: STDERR: 292: Not an error 263/571 Test #292: plm-reg-itk-similarity-stats-2 ........ Passed 0.08 sec test 303 Start 303: plm-reg-itk-demons-logd 303: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-logd" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 303: Test timeout computed to be: 1500 303: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 303: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt 303: EXPECTED_ERRNO is 295: RETVAL: 0 295: STDOUT: MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872 295: 295: STDERR: 295: Not an error 264/571 Test #295: plm-reg-itk-bspline-stats-1 ........... Passed 0.07 sec test 305 Start 305: plm-reg-itk-demons-sym-logd 305: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-sym-logd" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 305: Test timeout computed to be: 1500 305: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 305: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt 305: EXPECTED_ERRNO is 299: RETVAL: 0 299: STDOUT: MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872 299: 299: STDERR: 299: Not an error 265/571 Test #299: plm-reg-itk-demons-stats-2 ............ Passed 0.07 sec test 308 Start 308: plm-bsp-mse-c-stats 308: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 308: Test timeout computed to be: 1500 308: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 308: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha 308: EXPECTED_ERRNO is 308: RETVAL: 0 308: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 308: 308: STDERR: 308: Not an error 266/571 Test #308: plm-bsp-mse-c-stats ................... Passed 0.07 sec test 311 Start 311: plm-bsp-mse-g-stats 311: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 311: Test timeout computed to be: 1500 311: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 311: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha 311: EXPECTED_ERRNO is 301: RETVAL: 0 301: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 301: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 301: Launching registration worker thread 301: Inside registration worker thread 301: Doing registration stage 301: [1] xf_in->m_type = 0, xf_out->m_type = 0 301: Ready to start registration. 301: MSE [ 0] 18945.891 [ 0.046 secs] 301: MSE [ 1] 9795.787 [ 0.047 secs] 301: MSE [ 2] 3911.273 [ 0.049 secs] 301: MSE [ 3] 1186.045 [ 0.040 secs] 301: MSE [ 4] 314.763 [ 0.042 secs] 301: Done with registration. Writing output... 301: Deformation stats (out) 301: VF_MAX = 102.433 VF_AVG = 31.2783 301: [2] xf_out->m_type = 8, xf_in->m_type = 0 301: ** Registration worker thread finished. 301: Warping... 301: plm_warp_itk: xform_to_itk_vf 301: plm_warp_itk: convert_to_itk 301: plm_warp_itk: warping... 301: Saving image... 301: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-img.mha 301: Saving vf... 301: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-vf.mha 301: Load: 0.020664 301: Run: 0.224572 301: Save: 0.00338411 301: Total: 0.24862 301: Finished! 301: 301: STDERR: 301: Not an error 267/571 Test #301: plm-reg-itk-demons-diff ............... Passed 0.30 sec test 314 Start 314: plm-bsp-mse-h-stats 314: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 314: Test timeout computed to be: 1500 311: RETVAL: 0 311: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 311: 311: STDERR: 311: Not an error 268/571 Test #311: plm-bsp-mse-g-stats ................... Passed 0.17 sec test 317 Start 317: plm-bsp-mse-i-stats 317: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 317: Test timeout computed to be: 1500 314: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 314: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha 314: EXPECTED_ERRNO is 317: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 317: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha 317: EXPECTED_ERRNO is 303: RETVAL: 0 303: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 303: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 303: Launching registration worker thread 303: Inside registration worker thread 303: Doing registration stage 303: [1] xf_in->m_type = 0, xf_out->m_type = 0 303: Ready to start registration. 303: MSE [ 0] 18945.891 [ 0.023 secs] 303: MSE [ 1] 9788.487 [ 0.042 secs] 303: MSE [ 2] 4038.212 [ 0.049 secs] 303: MSE [ 3] 1283.245 [ 0.053 secs] 303: MSE [ 4] 392.878 [ 0.055 secs] 303: Done with registration. Writing output... 303: Deformation stats (out) 303: VF_MAX = 112.668 VF_AVG = 32.7138 303: [2] xf_out->m_type = 8, xf_in->m_type = 0 303: ** Registration worker thread finished. 303: Warping... 303: plm_warp_itk: xform_to_itk_vf 303: plm_warp_itk: convert_to_itk 303: plm_warp_itk: warping... 303: Saving image... 303: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-img.mha 303: Saving vf... 303: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-vf.mha 303: Load: 0.018893 303: Run: 0.229484 303: Save: 0.00441813 303: Total: 0.252795 303: Finished! 303: 303: STDERR: 303: Not an error 269/571 Test #303: plm-reg-itk-demons-logd ............... Passed 0.31 sec test 320 Start 320: plm-bsp-mse-k-stats 320: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 320: Test timeout computed to be: 1500 320: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 320: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha 320: EXPECTED_ERRNO is 314: RETVAL: 0 314: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 314: 314: STDERR: 314: Not an error 270/571 Test #314: plm-bsp-mse-h-stats ................... Passed 0.09 sec test 323 Start 323: plm-bsp-mse-l-stats 323: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 323: Test timeout computed to be: 1500 317: RETVAL: 0 317: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 317: 317: STDERR: 317: Not an error 271/571 Test #317: plm-bsp-mse-i-stats ................... Passed 0.10 sec test 325 Start 325: plm-bsp-mse-o 325: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 325: Test timeout computed to be: 1500 323: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 323: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha 323: EXPECTED_ERRNO is 320: RETVAL: 0 320: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 320: 320: STDERR: 320: Not an error 305: RETVAL: 0 305: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 305: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 305: Launching registration worker thread 305: Inside registration worker thread 305: Doing registration stage 305: [1] xf_in->m_type = 0, xf_out->m_type = 0 305: Ready to start registration. 305: MSE [ 0] 18945.891 [ 0.046 secs] 305: MSE [ 1] 9778.825 [ 0.051 secs] 305: MSE [ 2] 3980.165 [ 0.072 secs] 305: MSE [ 3] 1233.515 [ 0.065 secs] 305: MSE [ 4] 374.936 [ 0.068 secs] 305: Done with registration. Writing output... 305: Deformation stats (out) 305: VF_MAX = 109.365 VF_AVG = 31.9237 305: [2] xf_out->m_type = 8, xf_in->m_type = 0 305: ** Registration worker thread finished. 305: Warping... 305: plm_warp_itk: xform_to_itk_vf 305: plm_warp_itk: convert_to_itk 305: plm_warp_itk: warping... 305: Saving image... 305: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-img.mha 305: Saving vf... 305: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-vf.mha 305: Load: 0.0186541 305: Run: 0.312532 305: Save: 0.00430799 305: Total: 0.335494 305: Finished! 305: 305: STDERR: 305: Not an error 272/571 Test #305: plm-reg-itk-demons-sym-logd ........... Passed 0.39 sec test 327 Start 327: plm-bsp-mse-p 327: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 327: Test timeout computed to be: 1500 273/571 Test #320: plm-bsp-mse-k-stats ................... Passed 0.09 sec test 329 Start 329: plm-bsp-mse-q 329: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 329: Test timeout computed to be: 1500 325: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 325: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt 325: EXPECTED_ERRNO is 327: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 327: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt 327: EXPECTED_ERRNO is 329: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 329: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt 329: EXPECTED_ERRNO is 323: RETVAL: 0 323: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 323: 323: STDERR: 323: Not an error 274/571 Test #323: plm-bsp-mse-l-stats ................... Passed 0.07 sec test 331 Start 331: plm-bsp-mse-r 331: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 331: Test timeout computed to be: 1500 331: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 331: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt 331: EXPECTED_ERRNO is 325: RETVAL: 0 325: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 325: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 325: Launching registration worker thread 325: Inside registration worker thread 325: Doing registration stage 325: [1] xf_in->m_type = 0, xf_out->m_type = 0 325: RESAMPLE 1 1: (2 2 2), (2 2 2) 325: RESAMPLE 1 1: (2 2 2), (2 2 2) 325: volume_calc_grad complete. 325: bspline_xform_initialize 325: rdims = (2,2,2) 325: vox_per_rgn = (11,11,11) 325: cdims = (5 5 5) 325: Algorithm flavor = o 325: Threading = 0 325: >> Checking JH allocation 325: BSPLINE PARMS 325: max_its = 5 325: max_feval = 5 325: BSPLINE XFORM HEADER 325: vox_per_rgn = 11 11 11 325: roi_offset = 0 0 0 325: roi_dim = 19 19 19 325: img_dc = 1 0 0 0 1 0 0 0 1 325: BST METRICS 325: MET 110100 MSE 1.000000 325: Setting nmax, mmax = 375 21 325: >>> START 325: This problem is unconstrained. 325: [ 0, 0] MSE 18756.248 NV 6859 GM -2992.626 GN 812 [ 0.002 s ] 325: CMIN 0.00 CAVG 0.00 CMAX 0.00 325: LSD 0.00 325: [ 0, 1] MSE 17839.281 NV 6859 GM -3669.916 GN 971 [ 0.002 s ] 325: CMIN -0.06 CAVG 0.01 CMAX 0.67 325: LSD 1.00 325: [ 0, 2] MSE 14291.201 NV 6844 GM -3069.703 GN 827 [ 0.002 s ] 325: CMIN -0.32 CAVG 0.05 CMAX 3.36 325: LSD 5.00 325: [ 0, 3] MSE 3942.469 NV 6280 GM -1514.267 GN 474 [ 0.002 s ] 325: CMIN -1.35 CAVG 0.21 CMAX 14.12 325: LSD 21.00 325: [ 1, 4] MSE 6518.217 NV 5156 GM 1242.011 GN 628 [ 0.002 s ] 325: CMIN -2.29 CAVG 0.47 CMAX 37.57 325: LSD 35.84 325: [ 1, 5] MSE 347.073 NV 5829 GM -219.984 GN 76.6 [ 0.002 s ] 325: CMIN -1.44 CAVG 0.32 CMAX 24.31 325: LSD 15.58 325: [2] xf_out->m_type = 9, xf_in->m_type = 0 325: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 325: bspline_xform_initialize 325: rdims = (2,2,2) 325: vox_per_rgn = (22,22,22) 325: cdims = (5 5 5) 325: Writing transformation ... 325: Warping... 325: Running: plm_warp_native 325: Converting input image... 325: Converting xform... 325: bspline_xform_initialize 325: rdims = (2,2,2) 325: vox_per_rgn = (22,22,22) 325: cdims = (5 5 5) 325: ** Registration worker thread finished. 325: Creating output vf... 325: Creating output volume... 325: Running native warper... 325: bspline_warp complete. 325: Back convert to original type... 325: > Convert vf to itk 325: > Conversion complete. 325: plm_warp_native is complete. 325: Saving image... 325: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha 325: Saving vf... 325: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-vf.mha 325: Load: 0.0183561 325: Run: 0.017529 325: Save: 0.059104 325: Total: 0.0949891 325: Finished! 325: 325: STDERR: 325: Not an error 275/571 Test #325: plm-bsp-mse-o ......................... Passed 0.18 sec test 334 Start 334: plm-bsp-mi-c-stats 334: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 334: Test timeout computed to be: 1500 334: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 334: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha 334: EXPECTED_ERRNO is 329: RETVAL: 0 329: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 329: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 329: Launching registration worker thread 329: Inside registration worker thread 329: Doing registration stage 329: [1] xf_in->m_type = 0, xf_out->m_type = 0 329: RESAMPLE 1 1: (2 2 2), (2 2 2) 329: RESAMPLE 1 1: (2 2 2), (2 2 2) 329: volume_calc_grad complete. 329: bspline_xform_initialize 329: rdims = (2,2,2) 329: vox_per_rgn = (11,11,11) 329: cdims = (5 5 5) 329: Algorithm flavor = q 329: Threading = 0 329: >> Checking JH allocation 329: BSPLINE PARMS 329: max_its = 5 329: max_feval = 5 329: BSPLINE XFORM HEADER 329: vox_per_rgn = 11 11 11 329: roi_offset = 0 0 0 329: roi_dim = 19 19 19 329: img_dc = 1 0 0 0 1 0 0 0 1 329: BST METRICS 329: MET 110100 MSE 1.000000 329: Setting nmax, mmax = 375 21 329: >>> START 329: This problem is unconstrained. 329: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.001 s ] 329: CMIN 0.00 CAVG 0.00 CMAX 0.00 329: LSD 0.00 329: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.001 s ] 329: CMIN -0.05 CAVG 0.01 CMAX 0.68 329: LSD 1.00 329: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.001 s ] 329: CMIN -0.27 CAVG 0.05 CMAX 3.40 329: LSD 5.00 329: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.001 s ] 329: CMIN -2.31 CAVG 0.43 CMAX 26.12 329: LSD 35.51 329: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.001 s ] 329: CMIN -2.36 CAVG 0.35 CMAX 22.13 329: LSD 6.00 329: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.001 s ] 329: CMIN -2.20 CAVG 0.36 CMAX 21.85 329: LSD 1.43 329: [2] xf_out->m_type = 9, xf_in->m_type = 0 329: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 329: bspline_xform_initialize 329: rdims = (2,2,2) 329: vox_per_rgn = (22,22,22) 329: cdims = (5 5 5) 329: Writing transformation ... 329: Warping... 329: Running: plm_warp_native 329: Converting input image... 329: Converting xform... 329: bspline_xform_initialize 329: rdims = (2,2,2) 329: vox_per_rgn = (22,22,22) 329: cdims = (5 5 5) 329: Creating output vf... 329: Creating output volume... 329: Running native warper... 329: ** Registration worker thread finished. 329: bspline_warp complete. 329: Back convert to original type... 329: > Convert vf to itk 329: > Conversion complete. 329: plm_warp_native is complete. 329: Saving image... 329: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 329: Saving vf... 329: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-vf.mha 329: Load: 0.01898 329: Run: 0.0225818 329: Save: 0.0648611 329: Total: 0.106423 329: Finished! 329: 329: STDERR: 329: Not an error 276/571 Test #329: plm-bsp-mse-q ......................... Passed 0.19 sec test 337 Start 337: plm-bsp-mi-c-2-stats 337: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 337: Test timeout computed to be: 1500 337: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 337: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha 337: EXPECTED_ERRNO is 334: RETVAL: 0 334: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 334: 334: STDERR: 334: Not an error 277/571 Test #334: plm-bsp-mi-c-stats .................... Passed 0.11 sec test 340 Start 340: plm-bsp-mi-k-stats 340: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 340: Test timeout computed to be: 1500 340: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 340: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha 340: EXPECTED_ERRNO is 327: RETVAL: 0 327: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 327: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 327: Launching registration worker thread 327: Inside registration worker thread 327: Doing registration stage 327: [1] xf_in->m_type = 0, xf_out->m_type = 0 327: RESAMPLE 1 1: (2 2 2), (2 2 2) 327: RESAMPLE 1 1: (2 2 2), (2 2 2) 327: volume_calc_grad complete. 327: bspline_xform_initialize 327: rdims = (2,2,2) 327: vox_per_rgn = (11,11,11) 327: cdims = (5 5 5) 327: Algorithm flavor = p 327: Threading = 0 327: >> Checking JH allocation 327: BSPLINE PARMS 327: max_its = 5 327: max_feval = 5 327: BSPLINE XFORM HEADER 327: vox_per_rgn = 11 11 11 327: roi_offset = 0 0 0 327: roi_dim = 19 19 19 327: img_dc = 1 0 0 0 1 0 0 0 1 327: BST METRICS 327: MET 110100 MSE 1.000000 327: Setting nmax, mmax = 375 21 327: >>> START 327: This problem is unconstrained. 327: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.037 s ] 327: CMIN 0.00 CAVG 0.00 CMAX 0.00 327: LSD 0.00 327: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.034 s ] 327: CMIN -0.05 CAVG 0.01 CMAX 0.68 327: LSD 1.00 327: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.032 s ] 327: CMIN -0.27 CAVG 0.05 CMAX 3.40 327: LSD 5.00 327: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.016 s ] 327: CMIN -2.31 CAVG 0.43 CMAX 26.12 327: LSD 35.51 327: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.030 s ] 327: CMIN -2.36 CAVG 0.35 CMAX 22.13 327: LSD 6.00 327: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.022 s ] 327: CMIN -2.20 CAVG 0.36 CMAX 21.85 327: LSD 1.43 327: [2] xf_out->m_type = 9, xf_in->m_type = 0 327: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 327: bspline_xform_initialize 327: rdims = (2,2,2) 327: vox_per_rgn = (22,22,22) 327: cdims = (5 5 5) 327: ** Registration worker thread finished. 327: Writing transformation ... 327: Warping... 327: Running: plm_warp_native 327: Converting input image... 327: Converting xform... 327: bspline_xform_initialize 327: rdims = (2,2,2) 327: vox_per_rgn = (22,22,22) 327: cdims = (5 5 5) 327: Creating output vf... 327: Creating output volume... 327: Running native warper... 327: bspline_warp complete. 327: Back convert to original type... 327: > Convert vf to itk 327: > Conversion complete. 327: plm_warp_native is complete. 327: Saving image... 327: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha 327: Saving vf... 327: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-vf.mha 327: Load: 0.020201 327: Run: 0.180131 327: Save: 0.0408139 327: Total: 0.241146 327: Finished! 327: 327: STDERR: 327: Not an error 331: RETVAL: 0 331: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 331: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 331: Launching registration worker thread 331: Inside registration worker thread 331: Doing registration stage 331: [1] xf_in->m_type = 0, xf_out->m_type = 0 331: RESAMPLE 1 1: (2 2 2), (2 2 2) 331: RESAMPLE 1 1: (2 2 2), (2 2 2) 331: volume_calc_grad complete. 331: bspline_xform_initialize 331: rdims = (2,2,2) 331: vox_per_rgn = (11,11,11) 331: cdims = (5 5 5) 331: Algorithm flavor = r 331: Threading = 0 331: >> Checking JH allocation 331: BSPLINE PARMS 331: max_its = 5 331: max_feval = 5 331: BSPLINE XFORM HEADER 331: vox_per_rgn = 11 11 11 331: roi_offset = 0 0 0 331: roi_dim = 19 19 19 331: img_dc = 1 0 0 0 1 0 0 0 1 331: BST METRICS 331: MET 110100 MSE 1.000000 331: Setting nmax, mmax = 375 21 331: >>> START 331: This problem is unconstrained. 331: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.027 s ] 331: CMIN 0.00 CAVG 0.00 CMAX 0.00 331: LSD 0.00 331: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.023 s ] 331: CMIN -0.05 CAVG 0.01 CMAX 0.68 331: LSD 1.00 331: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.013 s ] 331: CMIN -0.27 CAVG 0.05 CMAX 3.40 331: LSD 5.00 331: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.000 s ] 331: CMIN -2.31 CAVG 0.43 CMAX 26.12 331: LSD 35.51 331: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.000 s ] 331: CMIN -2.36 CAVG 0.35 CMAX 22.13 331: LSD 6.00 331: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.000 s ] 331: CMIN -2.20 CAVG 0.36 CMAX 21.85 331: LSD 1.43 331: [2] xf_out->m_type = 9, xf_in->m_type = 0 331: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 331: bspline_xform_initialize 331: rdims = (2,2,2) 331: vox_per_rgn = (22,22,22) 331: cdims = (5 5 5) 331: ** Registration worker thread finished. 331: Writing transformation ... 331: Warping... 331: Running: plm_warp_native 331: Converting input image... 331: Converting xform... 331: bspline_xform_initialize 331: rdims = (2,2,2) 331: vox_per_rgn = (22,22,22) 331: cdims = (5 5 5) 331: Creating output vf... 331: Creating output volume... 331: Running native warper... 331: bspline_warp complete. 331: Back convert to original type... 331: > Convert vf to itk 331: > Conversion complete. 331: plm_warp_native is complete. 331: Saving image... 331: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 331: Saving vf... 331: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-vf.mha 331: Load: 0.049098 331: Run: 0.0784981 331: Save: 0.050235 331: Total: 0.177831 331: Finished! 331: 331: STDERR: 331: Not an error 278/571 Test #327: plm-bsp-mse-p ......................... Passed 0.32 sec test 343 Start 343: plm-bsp-gm-k-stats 343: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 343: Test timeout computed to be: 1500 279/571 Test #331: plm-bsp-mse-r ......................... Passed 0.27 sec test 345 Start 345: plm-bsp-sm-multi-a 345: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 345: Test timeout computed to be: 1500 337: RETVAL: 0 337: STDOUT: MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872 337: 337: STDERR: 343: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 343: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha 337: Not an error 343: EXPECTED_ERRNO is 280/571 Test #337: plm-bsp-mi-c-2-stats .................. Passed 0.14 sec test 348 Start 348: plm-bsp-openmp-stats 348: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 348: Test timeout computed to be: 1500 345: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 345: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt 345: EXPECTED_ERRNO is 348: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 348: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha 348: EXPECTED_ERRNO is 340: RETVAL: 0 340: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 340: 340: STDERR: 340: Not an error 281/571 Test #340: plm-bsp-mi-k-stats .................... Passed 0.08 sec test 350 Start 350: plm-bsp-resume 350: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 350: Test timeout computed to be: 1500 350: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 350: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt 350: EXPECTED_ERRNO is 343: RETVAL: 0 343: STDOUT: MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872 343: 343: STDERR: 343: Not an error 282/571 Test #343: plm-bsp-gm-k-stats .................... Passed 0.07 sec test 352 Start 352: plm-bsp-logfile 352: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-logfile" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 352: Test timeout computed to be: 1500 348: RETVAL: 0 348: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 348: 348: STDERR: 348: Not an error 283/571 Test #348: plm-bsp-openmp-stats .................. Passed 0.07 sec test 355 Start 355: plm-bsp-ushort-stats 355: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 355: Test timeout computed to be: 1500 352: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 355: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 355: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha 355: EXPECTED_ERRNO is 352: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt 352: EXPECTED_ERRNO is 350: RETVAL: 0 350: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 350: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 350: Launching registration worker thread 350: Inside registration worker thread 350: Doing registration stage 350: [1] xf_in->m_type = 0, xf_out->m_type = 0 350: RESAMPLE 1 1: (2 2 2), (2 2 2) 350: RESAMPLE 1 1: (2 2 2), (2 2 2) 350: volume_calc_grad complete. 350: bspline_xform_initialize 350: rdims = (2,2,2) 350: vox_per_rgn = (11,11,11) 350: cdims = (5 5 5) 350: Algorithm flavor = c 350: Threading = 0 350: >> Checking JH allocation 350: BSPLINE PARMS 350: max_its = 5 350: max_feval = 5 350: BSPLINE XFORM HEADER 350: vox_per_rgn = 11 11 11 350: roi_offset = 0 0 0 350: roi_dim = 19 19 19 350: img_dc = 1 0 0 0 1 0 0 0 1 350: BST METRICS 350: MET 110100 MSE 1.000000 350: Setting nmax, mmax = 375 21 350: >>> START 350: This problem is unconstrained. 350: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.002 s ] 350: CMIN 0.00 CAVG 0.00 CMAX 0.00 350: LSD 0.00 350: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.002 s ] 350: CMIN -0.07 CAVG 0.01 CMAX 0.68 350: LSD 1.00 350: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.002 s ] 350: CMIN -0.35 CAVG 0.05 CMAX 3.40 350: LSD 5.00 350: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.002 s ] 350: CMIN -1.48 CAVG 0.20 CMAX 14.26 350: LSD 21.00 350: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.002 s ] 350: CMIN -1.74 CAVG 0.44 CMAX 32.50 350: LSD 27.95 350: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.002 s ] 350: CMIN -1.73 CAVG 0.34 CMAX 23.99 350: LSD 13.11 350: [2] xf_out->m_type = 9, xf_in->m_type = 0 350: Doing registration stage 350: [1] xf_in->m_type = 9, xf_out->m_type = 0 350: RESAMPLE 1 1: (2 2 2), (2 2 2) 350: RESAMPLE 1 1: (2 2 2), (2 2 2) 350: volume_calc_grad complete. 350: bspline_xform_initialize 350: rdims = (2,2,2) 350: vox_per_rgn = (11,11,11) 350: cdims = (5 5 5) 350: Algorithm flavor = c 350: Threading = 0 350: >> Checking JH allocation 350: BSPLINE PARMS 350: max_its = 5 350: max_feval = 5 350: BSPLINE XFORM HEADER 350: vox_per_rgn = 11 11 11 350: roi_offset = 0 0 0 350: roi_dim = 19 19 19 350: img_dc = 1 0 0 0 1 0 0 0 1 350: BST METRICS 350: MET 110100 MSE 1.000000 350: Setting nmax, mmax = 375 21 350: >>> START 350: This problem is unconstrained. 350: [ 0, 0] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.002 s ] 350: CMIN -1.73 CAVG 0.34 CMAX 23.99 350: LSD 0.00 350: [ 0, 1] MSE 245.572 NV 5873 GM -24.090 GN 31.6 [ 0.002 s ] 350: CMIN -1.74 CAVG 0.33 CMAX 23.36 350: LSD 1.00 350: [ 1, 2] MSE 184.553 NV 5937 GM -53.657 GN 19.1 [ 0.002 s ] 350: CMIN -1.91 CAVG 0.35 CMAX 21.57 350: LSD 3.72 350: [ 2, 3] MSE 169.679 NV 5953 GM -95.518 GN 19.6 [ 0.002 s ] 350: CMIN -2.31 CAVG 0.35 CMAX 20.63 350: LSD 2.11 350: [ 3, 4] MSE 160.980 NV 5975 GM -14.478 GN 20.7 [ 0.002 s ] 350: CMIN -3.42 CAVG 0.39 CMAX 17.80 350: LSD 5.62 350: [ 4, 5] MSE 133.675 NV 5940 GM -9.965 GN 18.9 [ 0.002 s ] 350: CMIN -3.93 CAVG 0.41 CMAX 17.38 350: LSD 2.38 350: [2] xf_out->m_type = 9, xf_in->m_type = 9 350: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 350: bspline_xform_initialize 350: rdims = (2,2,2) 350: vox_per_rgn = (22,22,22) 350: cdims = (5 5 5) 350: Writing transformation ... 350: Warping... 350: Running: plm_warp_native 350: Converting input image... 350: Converting xform... 350: bspline_xform_initialize 350: rdims = (2,2,2) 350: vox_per_rgn = (22,22,22) 350: cdims = (5 5 5) 350: Creating output vf... 350: Creating output volume... 350: Running native warper... 350: ** Registration worker thread finished. 350: bspline_warp complete. 350: Back convert to original type... 350: > Convert vf to itk 350: > Conversion complete. 350: plm_warp_native is complete. 350: Saving image... 350: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha 350: Saving vf... 350: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-vf.mha 350: Load: 0.018548 350: Run: 0.026531 350: Save: 0.0314171 350: Total: 0.0764961 350: Finished! 350: 350: STDERR: 350: Not an error 284/571 Test #350: plm-bsp-resume ........................ Passed 0.13 sec test 358 Start 358: plm-bsp-double-stats 358: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 358: Test timeout computed to be: 1500 345: RETVAL: 0 345: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 345: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 345: Loading fixed image [1]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 345: Loading moving image [1]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 345: Launching registration worker thread 345: Inside registration worker thread 345: Doing registration stage 345: [1] xf_in->m_type = 0, xf_out->m_type = 0 345: RESAMPLE 1 1: (2 2 2), (2 2 2) 345: RESAMPLE 1 1: (2 2 2), (2 2 2) 345: volume_calc_grad_mag complete. 345: volume_calc_grad_mag complete. 345: volume_calc_grad complete. 345: RESAMPLE 1 1: (2 2 2), (2 2 2) 345: RESAMPLE 1 1: (2 2 2), (2 2 2) 345: volume_calc_grad complete. 345: bspline_xform_initialize 345: rdims = (2,2,2) 345: vox_per_rgn = (11,11,11) 345: cdims = (5 5 5) 345: Algorithm flavor = c 345: Threading = 0 345: >> Checking JH allocation 345: >> Performing JH allocation 345: BSPLINE PARMS 345: max_its = 5 345: max_feval = 5 345: BSPLINE XFORM HEADER 345: vox_per_rgn = 11 11 11 345: roi_offset = 0 0 0 345: roi_dim = 19 19 19 345: img_dc = 1 0 0 0 1 0 0 0 1 345: BST METRICS 345: MET 110100 GM 0.100000 345: MET 110100 MI 100.000000 345: >> Performing JH initialization 345: Setting nmax, mmax = 375 21 345: >>> START 345: This problem is unconstrained. 345: [ 0, 0] SCORE -23.086 NV 6859 GM 11.933 GN 2.8 [ 0.006 s ] 345: GM 172.276 MI -0.4031359 CMIN 0.01 CAVG 0.01 CMAX 0.01 345: LSD 0.00 345: [ 0, 1] SCORE -21.366 NV 6859 GM -20.848 GN 4.05 [ 0.006 s ] 345: GM 172.158 MI -0.3858200 CMIN -0.49 CAVG -0.00 CMAX 0.08 345: LSD 1.00 345: [ 0, 2] SCORE -22.915 NV 6859 GM -12.881 GN 2.54 [ 0.006 s ] 345: GM 172.298 MI -0.4014443 CMIN -0.08 CAVG 0.01 CMAX 0.02 345: LSD 0.18 345: [ 0, 3] SCORE -23.222 NV 6859 GM -1.121 GN 1.07 [ 0.006 s ] 345: GM 172.313 MI -0.4045370 CMIN -0.01 CAVG 0.01 CMAX 0.01 345: LSD 0.05 345: [ 1, 4] SCORE -23.229 NV 6859 GM 16.621 GN 3.63 [ 0.006 s ] 345: GM 172.348 MI -0.4046354 CMIN -0.01 CAVG 0.01 CMAX 0.01 345: LSD 0.01 345: [ 2, 5] SCORE -22.889 NV 6859 GM -16.998 GN 4.96 [ 0.006 s ] 345: GM 172.750 MI -0.4016393 CMIN -0.14 CAVG 0.01 CMAX 0.04 345: LSD 0.20 345: [2] xf_out->m_type = 9, xf_in->m_type = 0 345: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 345: bspline_xform_initialize 345: rdims = (2,2,2) 345: vox_per_rgn = (22,22,22) 345: cdims = (5 5 5) 345: Writing transformation ... 345: Warping... 345: Running: plm_warp_native 345: Converting input image... 345: Converting xform... 345: bspline_xform_initialize 345: rdims = (2,2,2) 345: vox_per_rgn = (22,22,22) 345: cdims = (5 5 5) 345: ** Registration worker thread finished. 345: Creating output vf... 345: Creating output volume... 345: Running native warper... 345: bspline_warp complete. 345: Back convert to original type... 345: > Convert vf to itk 345: > Conversion complete. 345: plm_warp_native is complete. 345: Saving image... 345: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha 345: Saving vf... 345: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-vf.mha 345: Load: 0.0208311 345: Run: 0.0413229 345: Save: 0.0351291 345: Total: 0.0972831 345: Finished! 345: 345: STDERR: 345: Not an error 285/571 Test #345: plm-bsp-sm-multi-a .................... Passed 0.17 sec test 362 Start 362: plm-bsp-char-output-stats 362: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 362: Test timeout computed to be: 1500 355: RETVAL: 0 355: STDOUT: MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872 355: 355: STDERR: 355: Not an error 358: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 358: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha 358: EXPECTED_ERRNO is 286/571 Test #355: plm-bsp-ushort-stats .................. Passed 0.11 sec test 364 Start 364: plm-bsp-rect 364: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-rect" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 364: Test timeout computed to be: 1500 362: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 362: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha 362: EXPECTED_ERRNO is 364: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 364: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt 364: EXPECTED_ERRNO is 352: RETVAL: 0 352: STDOUT: Plastimatch 1.9.3 352: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-1.mha 352: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/gauss-2.mha 352: Launching registration worker thread 352: Inside registration worker thread 352: Doing registration stage 352: [1] xf_in->m_type = 0, xf_out->m_type = 0 352: RESAMPLE 1 1: (2 2 2), (2 2 2) 352: RESAMPLE 1 1: (2 2 2), (2 2 2) 352: volume_calc_grad complete. 352: bspline_xform_initialize 352: rdims = (2,2,2) 352: vox_per_rgn = (11,11,11) 352: cdims = (5 5 5) 352: Algorithm flavor = g 352: Threading = 0 352: >> Checking JH allocation 352: BSPLINE PARMS 352: max_its = 5 352: max_feval = 5 352: BSPLINE XFORM HEADER 352: vox_per_rgn = 11 11 11 352: roi_offset = 0 0 0 352: roi_dim = 19 19 19 352: img_dc = 1 0 0 0 1 0 0 0 1 352: BST METRICS 352: MET 110100 MSE 1.000000 352: Setting nmax, mmax = 375 21 352: >>> START 352: This problem is unconstrained. 352: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.012 s ] 352: CMIN 0.00 CAVG 0.00 CMAX 0.00 352: LSD 0.00 352: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.001 s ] 352: CMIN -0.07 CAVG 0.01 CMAX 0.68 352: LSD 1.00 352: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.000 s ] 352: CMIN -0.35 CAVG 0.05 CMAX 3.40 352: LSD 5.00 352: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.000 s ] 352: CMIN -1.48 CAVG 0.20 CMAX 14.26 352: LSD 21.00 352: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.000 s ] 352: CMIN -1.74 CAVG 0.44 CMAX 32.50 352: LSD 27.95 352: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.000 s ] 352: CMIN -1.73 CAVG 0.34 CMAX 23.99 352: LSD 13.11 352: [2] xf_out->m_type = 9, xf_in->m_type = 0 352: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 352: bspline_xform_initialize 352: rdims = (2,2,2) 352: vox_per_rgn = (22,22,22) 352: cdims = (5 5 5) 352: ** Registration worker thread finished. 352: Writing transformation ... 352: Warping... 352: Running: plm_warp_native 352: Converting input image... 352: Converting xform... 352: bspline_xform_initialize 352: rdims = (2,2,2) 352: vox_per_rgn = (22,22,22) 352: cdims = (5 5 5) 352: Creating output vf... 352: Creating output volume... 352: Running native warper... 352: bspline_warp complete. 352: Back convert to original type... 352: > Convert vf to itk 352: > Conversion complete. 352: plm_warp_native is complete. 352: Saving image... 352: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-img.nrrd 352: Saving vf... 352: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-vf.nrrd 352: Plastimatch 1.9.3 352: Load: 0.037107 352: Run: 0.027241 352: Save: 0.0613258 352: Total: 0.125674 352: Finished! 352: 352: STDERR: 352: Not an error 287/571 Test #352: plm-bsp-logfile ....................... Passed 0.18 sec test 366 Start 366: plm-bsp-regularize-none-stats 366: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 366: Test timeout computed to be: 1500 358: RETVAL: 0 358: STDOUT: MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872 358: 358: STDERR: 358: Not an error 288/571 Test #358: plm-bsp-double-stats .................. Passed 0.10 sec test 369 Start 369: plm-bsp-regularize-analytic-stats 369: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 369: Test timeout computed to be: 1500 366: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 366: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha 366: EXPECTED_ERRNO is 362: RETVAL: 0 362: STDOUT: MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872 362: 362: STDERR: 362: Not an error 289/571 Test #362: plm-bsp-char-output-stats ............. Passed 0.09 sec test 372 Start 372: plm-bsp-regularize-numeric-stats 372: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 372: Test timeout computed to be: 1500 369: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 369: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha 369: EXPECTED_ERRNO is 372: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 372: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha 372: EXPECTED_ERRNO is 369: RETVAL: 0 369: STDOUT: Min: -7.802 -7.802 -7.802 369: Mean: -0.007 -0.007 -0.007 369: Max: 7.755 7.755 7.755 369: Mean abs: 0.234 0.234 0.234 369: Ave len: 0.474 369: Jacobian: MINJAC 0.419027 MAXJAC 1.04996 369: Energy: MINDIL -0.755 MAXDIL 0.0517541 369: MAXSTRAIN 0.0532 TOTSTRAIN 83.3434 369: Second derivatives: MINSECDER 2.4e-12 MAXSECDER 0.0192 369: AVESECDER 0.000198 INTSECDER 2.47e+04 369: Max second derivative at: (20 16 20) 369: 369: STDERR: 369: Not an error 290/571 Test #369: plm-bsp-regularize-analytic-stats ..... Passed 0.10 sec test 376 Start 376: plm-bsp-landmark-b-stats 376: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 376: Test timeout computed to be: 1500 376: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 376: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha 376: EXPECTED_ERRNO is 372: RETVAL: 0 372: STDOUT: Min: -7.243 -7.243 -7.243 372: Mean: -0.004 -0.004 -0.004 372: Max: 7.465 7.465 7.465 372: Mean abs: 0.231 0.231 0.231 372: Ave len: 0.460 372: Jacobian: MINJAC 0.443734 MAXJAC 1.03502 372: Energy: MINDIL -0.712 MAXDIL 0.0370853 372: MAXSTRAIN 0.0397 TOTSTRAIN 73.6175 372: Second derivatives: MINSECDER 9.85e-12 MAXSECDER 0.0182 372: AVESECDER 0.00018 INTSECDER 2.24e+04 372: Max second derivative at: (20 20 16) 372: 372: STDERR: 372: Not an error 291/571 Test #372: plm-bsp-regularize-numeric-stats ...... Passed 0.11 sec test 379 Start 379: plm-bsp-landmark-c-stats 379: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 379: Test timeout computed to be: 1500 366: RETVAL: 0 366: STDOUT: Min: -9.485 -9.485 -9.485 366: Mean: -0.004 -0.004 -0.004 366: Max: 9.819 9.819 9.819 366: Mean abs: 0.215 0.215 0.215 366: Ave len: 0.425 366: Jacobian: MINJAC 0.315393 MAXJAC 1.06557 366: Energy: MINDIL -0.958 MAXDIL 0.0701264 366: MAXSTRAIN 0.0879 TOTSTRAIN 112.949 366: Second derivatives: MINSECDER 0 MAXSECDER 0.0362 366: AVESECDER 0.000354 INTSECDER 4.42e+04 366: Max second derivative at: (20 20 16) 366: 366: STDERR: 366: Not an error 292/571 Test #366: plm-bsp-regularize-none-stats ......... Passed 0.12 sec test 382 Start 382: plm-bsp-landmark-d-stats 382: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 382: Test timeout computed to be: 1500 379: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 379: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha 379: EXPECTED_ERRNO is 382: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 382: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha 382: EXPECTED_ERRNO is 364: RETVAL: 0 364: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 364: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 364: Launching registration worker thread 364: Inside registration worker thread 364: Doing registration stage 364: [1] xf_in->m_type = 0, xf_out->m_type = 0 364: RESAMPLE 1 1: (2 2 2), (2 2 2) 364: RESAMPLE 1 1: (2 2 2), (2 2 2) 364: volume_calc_grad complete. 364: bspline_xform_initialize 364: Warning: vox_per_rgn was less than 4. 364: Warning: vox_per_rgn was less than 4. 364: Warning: vox_per_rgn was less than 4. 364: rdims = (5,5,5) 364: vox_per_rgn = (4,4,4) 364: cdims = (8 8 8) 364: Algorithm flavor = g 364: Threading = 0 364: >> Checking JH allocation 364: BSPLINE PARMS 364: max_its = 5 364: max_feval = 5 364: BSPLINE XFORM HEADER 364: vox_per_rgn = 4 4 4 364: roi_offset = 0 0 0 364: roi_dim = 19 19 19 364: img_dc = 1 0 0 0 1 0 0 0 1 364: BST METRICS 364: MET 110100 MSE 1.000000 364: Setting nmax, mmax = 1536 41 364: >>> START 364: This problem is unconstrained. 364: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.024 s ] 364: CMIN 0.00 CAVG 0.00 CMAX 0.00 364: LSD 0.00 364: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.023 s ] 364: CMIN -0.60 CAVG -0.00 CMAX 0.08 364: LSD 1.00 364: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.021 s ] 364: CMIN -2.99 CAVG -0.01 CMAX 0.42 364: LSD 5.00 364: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.016 s ] 364: CMIN -12.56 CAVG -0.05 CMAX 1.74 364: LSD 21.00 364: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.015 s ] 364: CMIN -54.37 CAVG -0.20 CMAX 6.52 364: LSD 67.10 364: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.002 s ] 364: CMIN -51.91 CAVG -0.18 CMAX 5.91 364: LSD 13.48 364: [2] xf_out->m_type = 9, xf_in->m_type = 0 364: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 364: bspline_xform_initialize 364: rdims = (5,5,5) 364: vox_per_rgn = (8,8,8) 364: cdims = (8 8 8) 364: ** Registration worker thread finished. 364: Writing transformation ... 364: Warping... 364: Running: plm_warp_native 364: Converting input image... 364: Converting xform... 364: bspline_xform_initialize 364: rdims = (5,5,5) 364: vox_per_rgn = (8,8,8) 364: cdims = (8 8 8) 364: Creating output vf... 364: Creating output volume... 364: Running native warper... 364: bspline_warp complete. 364: Back convert to original type... 364: > Convert vf to itk 364: > Conversion complete. 364: plm_warp_native is complete. 364: Saving image... 364: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-img.mha 364: Saving vf... 364: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd 364: Load: 0.0212779 364: Run: 0.104359 364: Save: 0.0636258 364: Total: 0.189263 364: Finished! 364: 364: STDERR: 364: Not an error 293/571 Test #364: plm-bsp-rect .......................... Passed 0.27 sec test 385 Start 385: plm-bsp-landmark-e-stats 385: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 385: Test timeout computed to be: 1500 382: RETVAL: 0 382: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 382: 382: STDERR: 382: Not an error 294/571 Test #382: plm-bsp-landmark-d-stats .............. Passed 0.08 sec test 388 Start 388: plm-bsp-dcos-a-stats 388: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 388: Test timeout computed to be: 1500 376: RETVAL: 0 376: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 376: 376: STDERR: 376: Not an error 295/571 Test #376: plm-bsp-landmark-b-stats .............. Passed 0.10 sec test 391 Start 391: plm-bsp-dcos-b-stats 391: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 391: Test timeout computed to be: 1500 388: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 388: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd 388: EXPECTED_ERRNO is 385: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 385: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha 385: EXPECTED_ERRNO is 391: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 391: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd 391: EXPECTED_ERRNO is 379: RETVAL: 0 379: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 379: 379: STDERR: 379: Not an error 296/571 Test #379: plm-bsp-landmark-c-stats .............. Passed 0.11 sec test 394 Start 394: plm-bsp-dcos-c-stats 394: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 394: Test timeout computed to be: 1500 394: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 394: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd 394: EXPECTED_ERRNO is 388: RETVAL: 0 388: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 388: 388: STDERR: 388: Not an error 297/571 Test #388: plm-bsp-dcos-a-stats .................. Passed 0.07 sec test 397 Start 397: plm-bsp-dcos-d-stats 397: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 397: Test timeout computed to be: 1500 391: RETVAL: 0 391: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 391: 391: STDERR: 391: Not an error 385: RETVAL: 0 385: STDOUT: MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872 385: 385: STDERR: 385: Not an error 298/571 Test #385: plm-bsp-landmark-e-stats .............. Passed 0.09 sec test 400 Start 400: plm-bsp-dcos-e-stats 400: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 400: Test timeout computed to be: 1500 299/571 Test #391: plm-bsp-dcos-b-stats .................. Passed 0.08 sec test 403 Start 403: plm-bsp-dcos-f-stats 403: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 403: Test timeout computed to be: 1500 397: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 397: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd 397: EXPECTED_ERRNO is 400: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 400: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd 400: EXPECTED_ERRNO is 403: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 403: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd 403: EXPECTED_ERRNO is 394: RETVAL: 0 394: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 394: 394: STDERR: 394: Not an error 300/571 Test #394: plm-bsp-dcos-c-stats .................. Passed 0.07 sec test 406 Start 406: plm-reg-multi-a-stats 406: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 406: Test timeout computed to be: 1500 406: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 406: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd 406: EXPECTED_ERRNO is 397: RETVAL: 0 397: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 397: 397: STDERR: 397: Not an error 301/571 Test #397: plm-bsp-dcos-d-stats .................. Passed 0.07 sec test 409 Start 409: plm-reg-multi-b-stats 409: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 409: Test timeout computed to be: 1500 403: RETVAL: 0 403: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 403: 403: STDERR: 403: Not an error 302/571 Test #403: plm-bsp-dcos-f-stats .................. Passed 0.07 sec test 412 Start 412: plm-reg-dv-itk-translation-stats 412: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 412: Test timeout computed to be: 1500 400: RETVAL: 0 400: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 400: 400: STDERR: 400: Not an error 409: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 409: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd 409: EXPECTED_ERRNO is 303/571 Test #400: plm-bsp-dcos-e-stats .................. Passed 0.08 sec test 421 Start 421: plm-reg-process-a-stats 421: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 421: Test timeout computed to be: 1500 412: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 412: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd 412: EXPECTED_ERRNO is 421: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 421: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha 421: EXPECTED_ERRNO is 406: RETVAL: 0 406: STDOUT: Min: -20.189 -0.190 -0.190 406: Mean: -20.000 -0.000 -0.000 406: Max: -19.810 0.190 0.190 406: Mean abs: 20.000 0.000 0.000 406: Ave len: 20.000 406: Jacobian: MINJAC 0.978516 MAXJAC 1.02157 406: Energy: MINDIL -0.0216 MAXDIL 0.0215666 406: MAXSTRAIN 0.0221 TOTSTRAIN 0.0501571 406: Second derivatives: MINSECDER 0 MAXSECDER 0.00749 406: AVESECDER 1.12e-05 INTSECDER 1.4e+03 406: Max second derivative at: (18 20 16) 406: 406: STDERR: 406: Not an error 304/571 Test #406: plm-reg-multi-a-stats ................. Passed 0.07 sec test 424 Start 424: plm-reg-trans-a-stats 424: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 424: Test timeout computed to be: 1500 424: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 424: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha 424: EXPECTED_ERRNO is 409: RETVAL: 0 409: STDOUT: MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872 409: 409: STDERR: 409: Not an error 305/571 Test #409: plm-reg-multi-b-stats ................. Passed 0.08 sec test 427 Start 427: plm-reg-trans-b-stats 427: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 427: Test timeout computed to be: 1500 412: RETVAL: 0 412: STDOUT: MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872 412: 412: STDERR: 412: Not an error 306/571 Test #412: plm-reg-dv-itk-translation-stats ...... Passed 0.08 sec test 430 Start 430: plm-reg-trans-mi-a-stats 430: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 430: Test timeout computed to be: 1500 427: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 427: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha 427: EXPECTED_ERRNO is 421: RETVAL: 0 421: STDOUT: MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872 421: 421: STDERR: 430: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 430: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha 430: EXPECTED_ERRNO is 421: Not an error 307/571 Test #421: plm-reg-process-a-stats ............... Passed 0.08 sec test 433 Start 433: plm-reg-autores-a-stats 433: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 433: Test timeout computed to be: 1500 433: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 433: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha 433: EXPECTED_ERRNO is 424: RETVAL: 0 424: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 424: 424: STDERR: 424: Not an error 308/571 Test #424: plm-reg-trans-a-stats ................. Passed 0.07 sec test 436 Start 436: plm-reg-autores-b-stats 436: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 436: Test timeout computed to be: 1500 436: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 436: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha 436: EXPECTED_ERRNO is 430: RETVAL: 0 430: STDOUT: MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872 430: 430: STDERR: 430: Not an error 309/571 Test #430: plm-reg-trans-mi-a-stats .............. Passed 0.07 sec test 442 Start 442: plm-compose-a-stats 442: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 442: Test timeout computed to be: 1500 427: RETVAL: 0 427: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 427: 427: STDERR: 427: Not an error 310/571 Test #427: plm-reg-trans-b-stats ................. Passed 0.08 sec test 446 Start 446: plm-compose-b-stats 446: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 446: Test timeout computed to be: 1500 442: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 442: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha 442: EXPECTED_ERRNO is 433: RETVAL: 0 433: STDOUT: MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872 433: 433: STDERR: 433: Not an error 311/571 Test #433: plm-reg-autores-a-stats ............... Passed 0.08 sec test 450 Start 450: plm-compose-c-stats 450: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 450: Test timeout computed to be: 1500 446: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 446: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha 446: EXPECTED_ERRNO is 450: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 450: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha 450: EXPECTED_ERRNO is 436: RETVAL: 0 436: STDOUT: MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872 436: 436: STDERR: 436: Not an error 312/571 Test #436: plm-reg-autores-b-stats ............... Passed 0.09 sec test 453 Start 453: plm-resample-a-stats 453: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 453: Test timeout computed to be: 1500 453: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 453: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha 453: EXPECTED_ERRNO is 446: RETVAL: 0 446: STDOUT: Min: 0.000 -1.573 -1.573 446: Mean: 13.794 -0.035 -0.034 446: Max: 20.615 1.329 1.329 446: Mean abs: 13.794 0.281 0.281 446: Ave len: 13.805 446: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 446: Energy: MINDIL -6.41 MAXDIL 0.0798482 446: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 446: Second derivatives: MINSECDER 0 MAXSECDER 165 446: AVESECDER 6.5 INTSECDER 8.13e+05 446: Max second derivative at: (30 18 18) 446: 446: STDERR: 446: Not an error 313/571 Test #446: plm-compose-b-stats ................... Passed 0.07 sec test 456 Start 456: plm-resample-b-stats 456: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 456: Test timeout computed to be: 1500 442: RETVAL: 0 442: STDOUT: Min: 0.000 -1.573 -1.573 442: Mean: 13.794 -0.035 -0.034 442: Max: 20.615 1.329 1.329 442: Mean abs: 13.794 0.281 0.281 442: Ave len: 13.805 442: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 442: Energy: MINDIL -6.41 MAXDIL 0.0798482 442: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 442: Second derivatives: MINSECDER 0 MAXSECDER 165 442: AVESECDER 6.5 INTSECDER 8.13e+05 442: Max second derivative at: (30 18 18) 442: 442: STDERR: 442: Not an error 314/571 Test #442: plm-compose-a-stats ................... Passed 0.08 sec test 459 Start 459: plm-resample-c-stats 459: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 459: Test timeout computed to be: 1500 456: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 456: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha 456: EXPECTED_ERRNO is 459: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 459: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha 459: EXPECTED_ERRNO is 450: RETVAL: 0 450: STDOUT: Min: 0.000 -2.171 -2.171 450: Mean: 12.523 -0.008 -0.008 450: Max: 21.615 1.811 1.811 450: Mean abs: 12.523 0.418 0.418 450: Ave len: 12.552 450: Jacobian: MINJAC -6.97561 MAXJAC 1.2529 450: Energy: MINDIL -6.7 MAXDIL 0.315048 450: MAXSTRAIN 47 TOTSTRAIN 30590.5 450: Second derivatives: MINSECDER 0 MAXSECDER 1.27e+03 450: AVESECDER 7.37 INTSECDER 9.21e+05 450: Max second derivative at: (30 20 27) 450: 450: STDERR: 450: Not an error 315/571 Test #450: plm-compose-c-stats ................... Passed 0.08 sec test 462 Start 462: plm-scale-a-stats 462: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 462: Test timeout computed to be: 1500 462: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 462: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd 462: EXPECTED_ERRNO is 453: RETVAL: 0 453: STDOUT: MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859 453: 453: STDERR: 453: Not an error 316/571 Test #453: plm-resample-a-stats .................. Passed 0.07 sec test 465 Start 465: plm-scale-vf-a-stats 465: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 465: Test timeout computed to be: 1500 465: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 465: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd 465: EXPECTED_ERRNO is 456: RETVAL: 0 456: STDOUT: MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000 456: 456: STDERR: 456: Not an error 317/571 Test #456: plm-resample-b-stats .................. Passed 0.07 sec test 467 Start 467: plm-sift-a 467: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-sift-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=sift;--output-ps-1;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/<>/obj-x86_64-linux-gnu/Testing/lung-1.mha;/<>/obj-x86_64-linux-gnu/Testing/lung-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 467: Test timeout computed to be: 1500 467: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 467: PARMS is sift;--output-ps-1;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/<>/obj-x86_64-linux-gnu/Testing/lung-1.mha;/<>/obj-x86_64-linux-gnu/Testing/lung-2.mha 467: EXPECTED_ERRNO is 459: RETVAL: 0 459: STDOUT: Min: 1.219 -2.075 -2.075 459: Mean: 6.707 -0.405 -0.405 459: Max: 13.751 1.148 1.148 459: Mean abs: 6.707 0.706 0.706 459: Ave len: 6.825 459: Jacobian: MINJAC 0.718591 MAXJAC 1.16208 459: Energy: MINDIL -0.304 MAXDIL 0.195159 459: MAXSTRAIN 0.277 TOTSTRAIN -132.025 459: Second derivatives: MINSECDER 0.000246 MAXSECDER 0.00708 459: AVESECDER 0.00129 INTSECDER 161 459: Max second derivative at: (16 16 16) 459: 459: STDERR: 459: Not an error 318/571 Test #459: plm-resample-c-stats .................. Passed 0.08 sec test 471 Start 471: plm-thumbnail-a-stats 471: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png" "-P" "/<>/cmake/RUN_CTEST.cmake" 471: Test timeout computed to be: 1500 462: RETVAL: 0 462: STDOUT: MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872 462: 462: STDERR: 462: Not an error 319/571 Test #462: plm-scale-a-stats ..................... Passed 0.08 sec test 474 Start 474: plm-thumbnail-b-stats 474: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png" "-P" "/<>/cmake/RUN_CTEST.cmake" 474: Test timeout computed to be: 1500 471: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 471: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png 471: EXPECTED_ERRNO is 474: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 474: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png 474: EXPECTED_ERRNO is 465: RETVAL: 0 465: STDOUT: Min: 4.000 0.000 0.000 465: Mean: 4.000 0.000 0.000 465: Max: 4.000 0.000 0.000 465: Mean abs: 4.000 0.000 0.000 465: Ave len: 4.000 465: Jacobian: MINJAC 1 MAXJAC 1 465: Energy: MINDIL 0 MAXDIL 0 465: MAXSTRAIN 0 TOTSTRAIN 0 465: Second derivatives: MINSECDER 0 MAXSECDER 0 465: AVESECDER 0 INTSECDER 0 465: Max second derivative at: (1 1 1) 465: 465: STDERR: 465: Not an error 320/571 Test #465: plm-scale-vf-a-stats .................. Passed 0.08 sec test 477 Start 477: plm-thumbnail-c-stats 477: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png" "-P" "/<>/cmake/RUN_CTEST.cmake" 477: Test timeout computed to be: 1500 477: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 477: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png 477: EXPECTED_ERRNO is 474: RETVAL: 0 474: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256 474: 474: STDERR: 474: Not an error 321/571 Test #474: plm-thumbnail-b-stats ................. Passed 0.07 sec test 480 Start 480: plm-intersect-stats 480: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-intersect.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 480: Test timeout computed to be: 1500 471: RETVAL: 0 471: STDOUT: MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256 471: 471: STDERR: 471: Not an error 322/571 Test #471: plm-thumbnail-a-stats ................. Passed 0.09 sec test 483 Start 483: plm-union-stats 483: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-union.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 483: Test timeout computed to be: 1500 480: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 480: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-intersect.mha 480: EXPECTED_ERRNO is 477: RETVAL: 0 477: STDOUT: MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256 477: 477: STDERR: 477: Not an error 323/571 Test #477: plm-thumbnail-c-stats ................. Passed 0.08 sec test 486 Start 486: plm-threshold-a-stats 486: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 486: Test timeout computed to be: 1500 483: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 483: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-union.mha 483: EXPECTED_ERRNO is 486: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 486: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha 486: EXPECTED_ERRNO is 486: RETVAL: 0 486: STDOUT: MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872 486: 486: STDERR: 486: Not an error 324/571 Test #486: plm-threshold-a-stats ................. Passed 0.08 sec test 489 Start 489: plm-threshold-b-stats 489: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 489: Test timeout computed to be: 1500 480: RETVAL: 0 480: STDOUT: MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872 480: 480: STDERR: 480: Not an error 325/571 Test #480: plm-intersect-stats ................... Passed 0.12 sec test 492 Start 492: plm-threshold-c-stats 492: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 492: Test timeout computed to be: 1500 489: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 489: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha 489: EXPECTED_ERRNO is 492: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 492: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha 492: EXPECTED_ERRNO is 483: RETVAL: 0 483: STDOUT: MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872 483: 483: STDERR: 483: Not an error 326/571 Test #483: plm-union-stats ....................... Passed 0.12 sec test 498 Start 498: plm-warp-a-stats 498: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 498: Test timeout computed to be: 1500 498: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 498: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha 498: EXPECTED_ERRNO is 489: RETVAL: 0 489: STDOUT: MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872 489: 489: STDERR: 489: Not an error 327/571 Test #489: plm-threshold-b-stats ................. Passed 0.09 sec test 501 Start 501: plm-warp-b-stats-1 501: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 501: Test timeout computed to be: 1500 501: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 501: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha 501: EXPECTED_ERRNO is 498: RETVAL: 0 498: STDOUT: Min: 0.875 -1.519 -1.519 498: Mean: 5.773 0.002 0.002 498: Max: 12.239 1.255 1.255 498: Mean abs: 5.773 0.518 0.518 498: Ave len: 5.853 498: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 498: Energy: MINDIL -0.184 MAXDIL 0.216011 498: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 498: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 498: AVESECDER 0.00122 INTSECDER 152 498: Max second derivative at: (15 15 15) 498: 498: STDERR: 498: Not an error 328/571 Test #498: plm-warp-a-stats ...................... Passed 0.10 sec test 503 Start 503: plm-warp-b-stats-2 503: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 503: Test timeout computed to be: 1500 503: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 503: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha 503: EXPECTED_ERRNO is 492: RETVAL: 0 492: STDOUT: MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872 492: 492: STDERR: 492: Not an error 329/571 Test #492: plm-threshold-c-stats ................. Passed 0.13 sec test 506 Start 506: plm-warp-c-stats 506: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 506: Test timeout computed to be: 1500 506: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 506: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha 506: EXPECTED_ERRNO is 501: RETVAL: 0 501: STDOUT: Min: 0.875 -1.519 -1.519 501: Mean: 5.773 0.002 0.002 501: Max: 12.239 1.255 1.255 501: Mean abs: 5.773 0.518 0.518 501: Ave len: 5.853 501: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 501: Energy: MINDIL -0.184 MAXDIL 0.216011 501: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 501: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 501: AVESECDER 0.00122 INTSECDER 152 501: Max second derivative at: (15 15 15) 501: 501: STDERR: 501: Not an error 330/571 Test #501: plm-warp-b-stats-1 .................... Passed 0.13 sec test 509 Start 509: plm-warp-d-stats 509: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 509: Test timeout computed to be: 1500 509: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 509: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha 509: EXPECTED_ERRNO is 503: RETVAL: 0 503: STDOUT: MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872 503: 503: STDERR: 503: Not an error 331/571 Test #503: plm-warp-b-stats-2 .................... Passed 0.12 sec test 512 Start 512: plm-warp-f-stats-1 512: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-warp-f-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 512: Test timeout computed to be: 1500 506: RETVAL: 0 506: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 506: 506: STDERR: 506: Not an error 332/571 Test #506: plm-warp-c-stats ...................... Passed 0.11 sec test 515 Start 515: plm-warp-g-stats-1 515: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 515: Test timeout computed to be: 1500 512: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 512: PARMS is header;plm-warp-f-img.nrrd 512: EXPECTED_ERRNO is 515: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 515: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd 515: EXPECTED_ERRNO is 509: RETVAL: 0 509: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 509: 509: STDERR: 509: Not an error 333/571 Test #509: plm-warp-d-stats ...................... Passed 0.08 sec test 518 Start 518: plm-warp-h-stats-1 518: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-h-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 518: Test timeout computed to be: 1500 518: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 518: PARMS is stats;plm-warp-h-img.nrrd 518: EXPECTED_ERRNO is 512: RETVAL: 0 512: STDOUT: Type = float 512: Planes = 1 512: Origin = -147.5140 -381.8964 -136.9799 512: Size = 38 38 38 512: Spacing = 13.1579 13.1579 13.1579 512: Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138 512: 512: STDERR: 512: Not an error 334/571 Test #512: plm-warp-f-stats-1 .................... Passed 0.09 sec test 521 Start 521: plm-warp-i-stats-1 521: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i-stats-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-i-img.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 521: Test timeout computed to be: 1500 515: RETVAL: 0 515: STDOUT: MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872 515: 515: STDERR: 515: Not an error 335/571 Test #515: plm-warp-g-stats-1 .................... Passed 0.10 sec test 524 Start 524: plm-xf-convert-b 524: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10" "-P" "/<>/cmake/RUN_CTEST.cmake" 524: Test timeout computed to be: 1500 521: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 521: PARMS is stats;plm-warp-i-img.nrrd 521: EXPECTED_ERRNO is 524: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 524: PARMS is xf-convert;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10 524: EXPECTED_ERRNO is 518: RETVAL: 0 518: STDOUT: MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872 518: 518: STDERR: 518: Not an error 336/571 Test #518: plm-warp-h-stats-1 .................... Passed 0.08 sec test 528 Start 528: plm-xf-convert-d-warp-1-stats 528: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 528: Test timeout computed to be: 1500 528: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 528: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd 528: EXPECTED_ERRNO is 524: RETVAL: 0 524: STDOUT: about to xform_convert 524: bspline_xform_initialize 524: Warning: vox_per_rgn was less than 4. 524: Warning: vox_per_rgn was less than 4. 524: Warning: vox_per_rgn was less than 4. 524: rdims = (1,1,1) 524: vox_per_rgn = (4,4,4) 524: cdims = (4 4 4) 524: did xform_convert 524: 524: STDERR: 524: Not an error 337/571 Test #524: plm-xf-convert-b ...................... Passed 0.07 sec test 531 Start 531: plm-xf-convert-d-warp-2-stats 531: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 531: Test timeout computed to be: 1500 531: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 531: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd 531: EXPECTED_ERRNO is 521: RETVAL: 0 521: STDOUT: MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872 521: 521: STDERR: 521: Not an error 338/571 Test #521: plm-warp-i-stats-1 .................... Passed 0.09 sec test 537 Start 537: plm-xf-convert-h-stats 537: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd" "-P" "/<>/cmake/RUN_CTEST.cmake" 537: Test timeout computed to be: 1500 528: RETVAL: 0 528: STDOUT: MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859 528: 528: STDERR: 528: Not an error 339/571 Test #528: plm-xf-convert-d-warp-1-stats ......... Passed 0.08 sec test 540 Start 540: xf-invert-vf-zero-1-stats 540: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 540: Test timeout computed to be: 1500 540: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 540: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha 540: EXPECTED_ERRNO is 537: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 537: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd 537: EXPECTED_ERRNO is 531: RETVAL: 0 531: STDOUT: MIN -999.991089 AVE -748.668152 MAX 0.000000 NONZERO 46980 NUMVOX 54872 531: 531: STDERR: 531: Not an error 340/571 Test #531: plm-xf-convert-d-warp-2-stats ......... Passed 0.12 sec test 543 Start 543: xf-invert-vf-trans-1-stats 543: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 543: Test timeout computed to be: 1500 537: RETVAL: 0 537: STDOUT: Min: 20.000 0.000 0.000 537: Mean: 20.000 0.000 0.000 537: Max: 20.000 0.000 0.000 537: Mean abs: 20.000 0.000 0.000 537: Ave len: 20.000 537: Jacobian: MINJAC 1 MAXJAC 1 537: Energy: MINDIL 0 MAXDIL 0 537: MAXSTRAIN 0 TOTSTRAIN 0 537: Second derivatives: MINSECDER 0 MAXSECDER 0 537: AVESECDER 0 INTSECDER 0 537: Max second derivative at: (1 1 1) 537: 537: STDERR: 537: Not an error 341/571 Test #537: plm-xf-convert-h-stats ................ Passed 0.10 sec test 545 Start 545: xf-invert-vrs-a 545: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-P" "/<>/cmake/RUN_CTEST.cmake" 545: Test timeout computed to be: 1500 543: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 543: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha 543: EXPECTED_ERRNO is 545: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 545: PARMS is xf-invert;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm 545: EXPECTED_ERRNO is 540: RETVAL: 0 540: STDOUT: Min: 0.000 0.000 0.000 540: Mean: 0.000 0.000 0.000 540: Max: 0.000 0.000 0.000 540: Mean abs: 0.000 0.000 0.000 540: Ave len: 0.000 540: Jacobian: MINJAC 1 MAXJAC 1 540: Energy: MINDIL 0 MAXDIL 0 540: MAXSTRAIN 0 TOTSTRAIN 0 540: Second derivatives: MINSECDER 0 MAXSECDER 0 540: AVESECDER 0 INTSECDER 0 540: Max second derivative at: (1 1 1) 540: 540: STDERR: 540: Not an error 342/571 Test #540: xf-invert-vf-zero-1-stats ............. Passed 0.12 sec test 547 Start 547: xf-invert-vrs-b 547: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/<>/Testing/Data/itk-rigid-b.tfm;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-P" "/<>/cmake/RUN_CTEST.cmake" 547: Test timeout computed to be: 1500 547: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 547: PARMS is xf-invert;--input;/<>/Testing/Data/itk-rigid-b.tfm;--output;/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm 547: EXPECTED_ERRNO is 545: RETVAL: 0 545: STDOUT: 545: STDERR: 545: Not an error 343/571 Test #545: xf-invert-vrs-a ....................... Passed 0.07 sec test 550 Start 550: proton-dose-1-stats 550: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 550: Test timeout computed to be: 1500 550: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 550: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha 550: EXPECTED_ERRNO is 543: RETVAL: 0 543: STDOUT: Min: -10.000 0.000 0.000 543: Mean: -9.999 0.000 0.000 543: Max: -9.963 0.000 0.000 543: Mean abs: 9.999 0.000 0.000 543: Ave len: 9.999 543: Jacobian: MINJAC 0.998589 MAXJAC 1 543: Energy: MINDIL -0.00141 MAXDIL 3.62396e-08 543: MAXSTRAIN 3.62e-08 TOTSTRAIN -2.78625 543: Second derivatives: MINSECDER 0 MAXSECDER 2.19e-06 543: AVESECDER 5.23e-08 INTSECDER 6.54 543: Max second derivative at: (2 1 1) 543: 543: STDERR: 543: Not an error 344/571 Test #543: xf-invert-vf-trans-1-stats ............ Passed 0.10 sec test 553 Start 553: proton-dose-4a-stats 553: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 553: Test timeout computed to be: 1500 553: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 553: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha 553: EXPECTED_ERRNO is 547: RETVAL: 0 547: STDOUT: 547: STDERR: 547: Not an error 345/571 Test #547: xf-invert-vrs-b ....................... Passed 0.07 sec test 556 Start 556: proton-dose-4d-stats 556: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 556: Test timeout computed to be: 1500 556: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 556: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha 556: EXPECTED_ERRNO is 550: RETVAL: 0 550: STDOUT: MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000 550: 550: STDERR: 550: Not an error 346/571 Test #550: proton-dose-1-stats ................... Passed 0.07 sec test 559 Start 559: proton-dose-5a-stats 559: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 559: Test timeout computed to be: 1500 559: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 559: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 559: EXPECTED_ERRNO is 553: RETVAL: 0 553: STDOUT: MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000 553: 553: STDERR: 553: Not an error 347/571 Test #553: proton-dose-4a-stats .................. Passed 0.07 sec test 562 Start 562: proton-dose-5d-stats 562: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 562: Test timeout computed to be: 1500 556: RETVAL: 0 556: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 556: 556: STDERR: 556: Not an error 562: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 562: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha 562: EXPECTED_ERRNO is 348/571 Test #556: proton-dose-4d-stats .................. Passed 0.07 sec test 565 Start 565: proton-dose-6a-stats 565: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 565: Test timeout computed to be: 1500 565: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 565: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha 565: EXPECTED_ERRNO is 559: RETVAL: 0 559: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 559: 559: STDERR: 559: Not an error 349/571 Test #559: proton-dose-5a-stats .................. Passed 0.07 sec test 567 Start 567: proton-dose-8d 567: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 567: Test timeout computed to be: 1500 567: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 567: PARMS is dose;--command-file;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt 567: EXPECTED_ERRNO is 562: RETVAL: 0 562: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 562: 562: STDERR: 562: Not an error 350/571 Test #562: proton-dose-5d-stats .................. Passed 0.07 sec test 569 Start 569: wed-a 569: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/<>/obj-x86_64-linux-gnu/Testing/wed-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 569: Test timeout computed to be: 1500 565: RETVAL: 0 565: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 565: 565: STDERR: 565: Not an error 351/571 Test #565: proton-dose-6a-stats .................. Passed 0.07 sec test 16 Start 16: gauss-7 16: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-7" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20" "-P" "/<>/cmake/RUN_CTEST.cmake" 16: Test timeout computed to be: 1500 569: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 569: PARMS is wed;--command-file;/<>/obj-x86_64-linux-gnu/Testing/wed-a.txt 569: EXPECTED_ERRNO is 16: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 16: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20 16: EXPECTED_ERRNO is 16: RETVAL: 0 16: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gauss-7.mha 16: 16: STDERR: 16: Not an error 352/571 Test #16: gauss-7 ............................... Passed 0.05 sec test 23 Start 23: gw-lung-a 23: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5" "-P" "/<>/cmake/RUN_CTEST.cmake" 23: Test timeout computed to be: 1500 23: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 23: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5 23: EXPECTED_ERRNO is 567: RETVAL: 0 567: STDOUT: 567: [PLAN] 567: patient : /<>/obj-x86_64-linux-gnu/Testing/rect-17.mha 567: target : 567: dose_out : /<>/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha 567: debug : 0 567: dose norm : 100 567: 567: [SETTINGS] 567: flavor: d ** 567: homo_approx: n ** 567: ray_step: 1 ** 567: aperture_out: ** 567: proj_dose_out: ** 567: proj_img_out: ** 567: range_comp_out: ** 567: sigma_out: ** 567: wed_out: ** 567: beam_weight: 1 ** 567: 567: [GEOMETRY & APERTURE] 567: source: 0 -2000 0 ** 567: isocenter: 0 0 0 ** 567: vup: 0 0 1 ** 567: offset: 1500 ** 567: ap_center in pixels: 20 20 ** 567: i_res: 41 41 ** 567: spacing: 3.75 3.75 ** 567: source_size: 0 ** 567: ap_file_in: ** 567: rc_file_in: ** 567: smearing: 5 ** 567: 567: [PEAK] 567: E0: P0 567: spread: P0 567: weight: P0 567: 567: Start dose calculation Beam 1 567: Plan_calc::compute_beam_dose(beam) entry -- 567: Setting RVRTS = 1 567: FPD = 347.500001, BPD = 649.116731 567: 41 41 302 567: Setting RVRTS = 1 567: FPD = 347.500001, BPD = 649.116731 567: 41 41 302 567: FPD = 347.500001, BPD = 649.116731 567: 41 41 302 567: Setting RVRTS = 1 567: FPD = 347.500001, BPD = 649.116731 567: 41 41 302 567: Priority 1. Beamlet map file detected: Any manual peaks set, depth prescription, target or range compensator will not be considered. 567: Dose is null in the entire volume. Please check your input conditions. 567: 1 x 100%. 567: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 567: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha 567: Sigma: 0.000000 seconds 567: Calc: 0.041414 seconds 567: IO: 0.019510 seconds 567: Reformat: 0.008574 seconds 567: Misc: 0.001604 seconds 567: done. 567: 567: Total execution time : 0.071240 seconds. 567: 567: STDERR: 567: Not an error 353/571 Test #567: proton-dose-8d ........................ Passed 0.12 sec test 24 Start 24: gw-lung-b 24: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0" "-P" "/<>/cmake/RUN_CTEST.cmake" 24: Test timeout computed to be: 1500 24: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 24: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0 24: EXPECTED_ERRNO is 23: RETVAL: 0 23: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha 23: 23: STDERR: 23: Not an error 354/571 Test #23: gw-lung-a ............................. Passed 0.07 sec test 25 Start 25: gw-lung-c 25: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5" "-P" "/<>/cmake/RUN_CTEST.cmake" 25: Test timeout computed to be: 1500 25: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 25: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5 25: EXPECTED_ERRNO is 24: RETVAL: 0 24: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha 24: 24: STDERR: 24: Not an error 355/571 Test #24: gw-lung-b ............................. Passed 0.07 sec test 34 Start 34: rect-6 34: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-6" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2" "-P" "/<>/cmake/RUN_CTEST.cmake" 34: Test timeout computed to be: 1500 34: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 34: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2 34: EXPECTED_ERRNO is 25: RETVAL: 0 25: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha 25: 25: STDERR: 25: Not an error 356/571 Test #25: gw-lung-c ............................. Passed 0.07 sec test 35 Start 35: rect-7 35: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-7" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3" "-P" "/<>/cmake/RUN_CTEST.cmake" 35: Test timeout computed to be: 1500 35: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 35: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3 35: EXPECTED_ERRNO is 34: RETVAL: 0 34: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-6.mha 34: 34: STDERR: 34: Not an error 357/571 Test #34: rect-6 ................................ Passed 0.05 sec test 40 Start 40: rect-10-roi-2 40: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-2" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60" "-P" "/<>/cmake/RUN_CTEST.cmake" 40: Test timeout computed to be: 1500 40: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 40: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60 40: EXPECTED_ERRNO is 35: RETVAL: 0 35: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-7.mha 35: 35: STDERR: 35: Not an error 358/571 Test #35: rect-7 ................................ Passed 0.05 sec test 49 Start 49: rect-18 49: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-18" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20" "-P" "/<>/cmake/RUN_CTEST.cmake" 49: Test timeout computed to be: 1500 49: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 49: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20 49: EXPECTED_ERRNO is 40: RETVAL: 0 40: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha 40: 40: STDERR: 40: Not an error 359/571 Test #40: rect-10-roi-2 ......................... Passed 0.05 sec test 59 Start 59: rgc-1 59: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rgc-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1" "-P" "/<>/cmake/RUN_CTEST.cmake" 59: Test timeout computed to be: 1500 59: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 59: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1 59: EXPECTED_ERRNO is 49: RETVAL: 0 49: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rect-18.mha 49: 49: STDERR: 49: Not an error 360/571 Test #49: rect-18 ............................... Passed 0.05 sec test 68 Start 68: xramp-1 68: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xramp-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 68: Test timeout computed to be: 1500 68: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 68: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38 68: EXPECTED_ERRNO is 59: RETVAL: 0 59: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/rgc-1.mha 59: 59: STDERR: 59: Not an error 361/571 Test #59: rgc-1 ................................. Passed 0.05 sec test 69 Start 69: yramp-1 69: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=yramp-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 69: Test timeout computed to be: 1500 69: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 69: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38 69: EXPECTED_ERRNO is 68: RETVAL: 0 68: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/xramp-1.mha 68: 68: STDERR: 68: Not an error 362/571 Test #68: xramp-1 ............................... Passed 0.05 sec test 70 Start 70: zramp-1 70: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=zramp-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/<>/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 70: Test timeout computed to be: 1500 70: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 70: PARMS is synth;--output;/<>/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38 70: EXPECTED_ERRNO is 69: RETVAL: 0 69: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/yramp-1.mha 69: 69: STDERR: 69: Not an error 363/571 Test #69: yramp-1 ............................... Passed 0.05 sec test 75 Start 75: vf-gaussian-1 75: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-gaussian-1" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38" "-P" "/<>/cmake/RUN_CTEST.cmake" 75: Test timeout computed to be: 1500 75: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 75: PARMS is synth-vf;--output;/<>/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38 75: EXPECTED_ERRNO is 70: RETVAL: 0 70: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/zramp-1.mha 70: 70: STDERR: 70: Not an error 364/571 Test #70: zramp-1 ............................... Passed 0.05 sec test 77 Start 77: vf-zero-check 77: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 77: Test timeout computed to be: 1500 77: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt 77: -- REGEX is Mean abs: *([-0-9.]*) 77: -- LOWER_THRESH is 0.000 77: -- UPPER_THRESH is 0.000 77: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| 77: -- PARSED_VALUE=|0.000| 77: Not an error 365/571 Test #77: vf-zero-check ......................... Passed 0.01 sec test 79 Start 79: vf-trans-1-check 79: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 79: Test timeout computed to be: 1500 79: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt 79: -- REGEX is Mean: *([-0-9.]*) 79: -- LOWER_THRESH is 10.000 79: -- UPPER_THRESH is 10.000 79: -- PARSED VALUE=|Mean: 10.000 0.000 0.000| 79: -- PARSED_VALUE=|10.000| 79: Not an error 366/571 Test #79: vf-trans-1-check ...................... Passed 0.01 sec test 81 Start 81: vf-trans-2-check 81: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt" "-DREGEX=Mean: *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 81: Test timeout computed to be: 1500 81: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt 81: -- REGEX is Mean: *[-0-9.]* *([-0-9.]*) 81: -- LOWER_THRESH is 10.000 81: -- UPPER_THRESH is 10.000 81: -- PARSED VALUE=|Mean: 0.000 10.000 0.000| 81: -- PARSED_VALUE=|10.000| 81: Not an error 367/571 Test #81: vf-trans-2-check ...................... Passed 0.01 sec test 83 Start 83: vf-radial-1-check 83: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=5.15" "-DUPPER_THRESH=5.16" "-P" "/<>/Testing/PlmCheckInterval.cmake" 83: Test timeout computed to be: 1500 83: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt 83: -- REGEX is Mean abs: *([-0-9.]*) 83: -- LOWER_THRESH is 5.15 83: -- UPPER_THRESH is 5.16 83: -- PARSED VALUE=|Mean abs: 5.157 5.157 5.157| 83: -- PARSED_VALUE=|5.157| 83: Not an error 368/571 Test #83: vf-radial-1-check ..................... Passed 0.01 sec test 85 Start 85: plm-compare-a-check 85: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/<>/Testing/PlmCheckInterval.cmake" 85: Test timeout computed to be: 1500 85: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt 85: -- REGEX is AVE *([-0-9.]*) 85: -- LOWER_THRESH is 7.76 85: -- UPPER_THRESH is 7.78 85: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786| 85: -- PARSED_VALUE=|7.769665| 85: Not an error 369/571 Test #85: plm-compare-a-check ................... Passed 0.01 sec test 87 Start 87: plm-compare-b-check 87: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/<>/Testing/PlmCheckInterval.cmake" 87: Test timeout computed to be: 1500 87: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt 87: -- REGEX is Ave len: *([-0-9.]*) 87: -- LOWER_THRESH is 14.141 87: -- UPPER_THRESH is 14.143 87: -- PARSED VALUE=|Ave len: 14.142| 87: -- PARSED_VALUE=|14.142| 87: Not an error 370/571 Test #87: plm-compare-b-check ................... Passed 0.01 sec test 89 Start 89: plm-compare-c-check 89: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/<>/Testing/PlmCheckInterval.cmake" 89: Test timeout computed to be: 1500 75: RETVAL: 0 75: STDOUT: Setting header 75: Origin = -243.4211 -243.4211 -243.4211 75: Size = 38 38 38 75: Spacing = 13.1579 13.1579 13.1579 75: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 75: Header was set 75: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha 75: 75: STDERR: 75: Not an error 371/571 Test #75: vf-gaussian-1 ......................... Passed 0.06 sec test 92 Start 92: plm-diff-a-check 92: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/<>/Testing/PlmCheckInterval.cmake" 92: Test timeout computed to be: 1500 89: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt 89: -- REGEX is Ave len: *([-0-9.]*) 89: -- LOWER_THRESH is 14.141 89: -- UPPER_THRESH is 14.143 89: -- PARSED VALUE=|Ave len: 14.142| 89: -- PARSED_VALUE=|14.142| 89: Not an error 372/571 Test #89: plm-compare-c-check ................... Passed 0.01 sec test 95 Start 95: plm-diff-b-check 95: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/<>/Testing/PlmCheckInterval.cmake" 95: Test timeout computed to be: 1500 92: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt 92: -- REGEX is AVE *([-0-9.]*) 92: -- LOWER_THRESH is 7.76 92: -- UPPER_THRESH is 7.78 92: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872| 92: -- PARSED_VALUE=|7.769665| 92: Not an error 373/571 Test #92: plm-diff-a-check ...................... Passed 0.01 sec test 97 Start 97: demons-a-check 97: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt" "-DREGEX=^Mean: *([0-9.]*)" "-DLOWER_THRESH=3.4" "-DUPPER_THRESH=3.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 97: Test timeout computed to be: 1500 95: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt 95: -- REGEX is Ave len: *([-0-9.]*) 95: -- LOWER_THRESH is 14.141 95: -- UPPER_THRESH is 14.143 95: -- PARSED VALUE=|Ave len: 14.142| 95: -- PARSED_VALUE=|14.142| 97: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt 97: -- REGEX is ^Mean: *([0-9.]*) 97: -- LOWER_THRESH is 3.4 97: -- UPPER_THRESH is 3.5 95: Not an error 97: -- PARSED VALUE=|Mean: 3.443 0.016 0.016| 97: -- PARSED_VALUE=|3.443| 97: Not an error 374/571 Test #97: demons-a-check ........................ Passed 0.01 sec test 100 Start 100: drr-a-check 100: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/<>/Testing/PlmCheckInterval.cmake" 100: Test timeout computed to be: 1500 375/571 Test #95: plm-diff-b-check ...................... Passed 0.01 sec test 103 Start 103: drr-b-check 103: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/<>/Testing/PlmCheckInterval.cmake" 103: Test timeout computed to be: 1500 100: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt 100: -- REGEX is MAX *([-0-9.]*) 100: -- LOWER_THRESH is 0.045 100: -- UPPER_THRESH is 0.055 100: -- PARSED VALUE=|MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384| 100: -- PARSED_VALUE=|0.050109| 100: Not an error 376/571 Test #100: drr-a-check ........................... Passed 0.01 sec test 106 Start 106: drr-c-check 106: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/<>/Testing/PlmCheckInterval.cmake" 106: Test timeout computed to be: 1500 103: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt 103: -- REGEX is MAX *([-0-9.]*) 103: -- LOWER_THRESH is 0.045 103: -- UPPER_THRESH is 0.055 103: -- PARSED VALUE=|MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384| 103: -- PARSED_VALUE=|0.049634| 103: Not an error 377/571 Test #103: drr-b-check ........................... Passed 0.01 sec test 109 Start 109: fdk-cpu-a-check 109: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 109: Test timeout computed to be: 1500 106: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt 106: -- REGEX is MAX *([-0-9.]*) 106: -- LOWER_THRESH is 0.045 106: -- UPPER_THRESH is 0.055 106: -- PARSED VALUE=|MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384| 106: -- PARSED_VALUE=|0.050494| 106: Not an error 378/571 Test #106: drr-c-check ........................... Passed 0.01 sec test 112 Start 112: fdk-cpu-d-check 112: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 112: Test timeout computed to be: 1500 109: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt 109: -- REGEX is MAX *([-0-9.]*) 109: -- LOWER_THRESH is -987.5 109: -- UPPER_THRESH is -986.5 109: -- PARSED VALUE=|MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| 109: -- PARSED_VALUE=|-987.021973| 109: Not an error 379/571 Test #109: fdk-cpu-a-check ....................... Passed 0.01 sec test 115 Start 115: landmark-warp-a-check-1 115: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 115: Test timeout computed to be: 1500 112: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt 112: -- REGEX is MAX *([-0-9.]*) 112: -- LOWER_THRESH is -987.5 112: -- UPPER_THRESH is -986.5 112: -- PARSED VALUE=|MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| 112: -- PARSED_VALUE=|-987.021973| 112: Not an error 380/571 Test #112: fdk-cpu-d-check ....................... Passed 0.01 sec test 117 Start 117: landmark-warp-a-check-2 117: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-23.2" "-DUPPER_THRESH=-22.7" "-P" "/<>/Testing/PlmCheckInterval.cmake" 117: Test timeout computed to be: 1500 117: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt 117: -- REGEX is Mean: *([-0-9.]*) 117: -- LOWER_THRESH is -23.2 117: -- UPPER_THRESH is -22.7 117: -- PARSED VALUE=|Mean: -22.960 0.011 0.000| 117: -- PARSED_VALUE=|-22.960| 117: Not an error 115: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt 115: -- REGEX is AVE *([-0-9.]*) 381/571 Test #117: landmark-warp-a-check-2 ............... Passed 0.01 sec test 120 Start 120: landmark-warp-b-check-1 120: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.2" "-DUPPER_THRESH=-991.8" "-P" "/<>/Testing/PlmCheckInterval.cmake" 120: Test timeout computed to be: 1500 115: -- LOWER_THRESH is -992.0 115: -- UPPER_THRESH is -991.5 115: -- PARSED VALUE=|MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872| 115: -- PARSED_VALUE=|-991.799744| 115: Not an error 382/571 Test #115: landmark-warp-a-check-1 ............... Passed 0.01 sec test 122 Start 122: landmark-warp-b-check-2 122: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.55" "-DUPPER_THRESH=-1.4" "-P" "/<>/Testing/PlmCheckInterval.cmake" 122: Test timeout computed to be: 1500 120: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt 120: -- REGEX is AVE *([-0-9.]*) 120: -- LOWER_THRESH is -992.2 120: -- UPPER_THRESH is -991.8 120: -- PARSED VALUE=|MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872| 120: -- PARSED_VALUE=|-992.005493| 120: Not an error 383/571 Test #120: landmark-warp-b-check-1 ............... Passed 0.01 sec test 125 Start 125: landmark-warp-c-check-1 125: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 125: Test timeout computed to be: 1500 122: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt 122: -- REGEX is Mean: *([-0-9.]*) 122: -- LOWER_THRESH is -1.55 122: -- UPPER_THRESH is -1.4 122: -- PARSED VALUE=|Mean: -1.500 0.018 0.000| 122: -- PARSED_VALUE=|-1.500| 122: Not an error 125: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt 125: -- REGEX is AVE *([-0-9.]*) 125: -- LOWER_THRESH is -992.0 125: -- UPPER_THRESH is -991.5 125: -- PARSED VALUE=|MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872| 125: -- PARSED_VALUE=|-991.665894| 125: Not an error 384/571 Test #122: landmark-warp-b-check-2 ............... Passed 0.01 sec test 127 Start 127: landmark-warp-c-check-2 127: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.6" "-DUPPER_THRESH=-1.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 127: Test timeout computed to be: 1500 385/571 Test #125: landmark-warp-c-check-1 ............... Passed 0.01 sec test 128 Start 128: landmark-warp-d 128: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv" "-P" "/<>/cmake/RUN_CTEST.cmake" 128: Test timeout computed to be: 1500 127: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt 127: -- REGEX is Mean: *([-0-9.]*) 127: -- LOWER_THRESH is -1.6 127: -- UPPER_THRESH is -1.5 127: -- PARSED VALUE=|Mean: -1.562 0.019 0.000| 127: -- PARSED_VALUE=|-1.562| 127: Not an error 386/571 Test #127: landmark-warp-c-check-2 ............... Passed 0.01 sec test 131 Start 131: plm-add-a-check 131: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/<>/Testing/PlmCheckInterval.cmake" 131: Test timeout computed to be: 1500 128: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 128: PARMS is lm-warp;-a;tps;-f;/<>/Testing/Data/fiducials-rect-2.fcsv;-m;/<>/Testing/Data/fiducials-rect-3.fcsv;-I;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv 128: EXPECTED_ERRNO is 131: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt 131: -- REGEX is AVE *([-0-9.]*) 131: -- LOWER_THRESH is -1000.1 131: -- UPPER_THRESH is -999.9 131: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| 131: -- PARSED_VALUE=|-1000.000000| 131: Not an error 387/571 Test #131: plm-add-a-check ....................... Passed 0.01 sec test 134 Start 134: plm-add-b-check 134: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-500.1" "-DUPPER_THRESH=-499.9" "-P" "/<>/Testing/PlmCheckInterval.cmake" 134: Test timeout computed to be: 1500 134: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt 134: -- REGEX is AVE *([-0-9.]*) 134: -- LOWER_THRESH is -500.1 134: -- UPPER_THRESH is -499.9 134: -- PARSED VALUE=|MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872| 134: -- PARSED_VALUE=|-500.000000| 134: Not an error 388/571 Test #134: plm-add-b-check ....................... Passed 0.01 sec test 137 Start 137: plm-add-vf-a-check 137: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=20.000" "-DUPPER_THRESH=20.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 137: Test timeout computed to be: 1500 137: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt 137: -- REGEX is Mean: *([-0-9.]*) 137: -- LOWER_THRESH is 20.000 137: -- UPPER_THRESH is 20.000 137: -- PARSED VALUE=|Mean: 20.000 0.000 0.000| 137: -- PARSED_VALUE=|20.000| 137: Not an error 389/571 Test #137: plm-add-vf-a-check .................... Passed 0.01 sec test 140 Start 140: plm-add-vf-b-check 140: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.000" "-DUPPER_THRESH=5.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 140: Test timeout computed to be: 1500 140: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt 140: -- REGEX is Mean: *([-0-9.]*) 140: -- LOWER_THRESH is 5.000 140: -- UPPER_THRESH is 5.000 140: -- PARSED VALUE=|Mean: 5.000 5.000 0.000| 140: -- PARSED_VALUE=|5.000| 140: Not an error 390/571 Test #140: plm-add-vf-b-check .................... Passed 0.01 sec test 143 Start 143: plm-adjust-a-check 143: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/<>/Testing/PlmCheckInterval.cmake" 143: Test timeout computed to be: 1500 143: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt 143: -- REGEX is AVE *([-0-9.]*) 143: -- LOWER_THRESH is -819.55 143: -- UPPER_THRESH is -819.54 143: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 143: -- PARSED_VALUE=|-819.546265| 143: Not an error 391/571 Test #143: plm-adjust-a-check .................... Passed 0.01 sec test 146 Start 146: plm-adjust-b-check 146: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/<>/Testing/PlmCheckInterval.cmake" 146: Test timeout computed to be: 1500 146: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt 146: -- REGEX is AVE *([-0-9.]*) 146: -- LOWER_THRESH is -819.55 146: -- UPPER_THRESH is -819.54 146: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 146: -- PARSED_VALUE=|-819.546265| 146: Not an error 392/571 Test #146: plm-adjust-b-check .................... Passed 0.01 sec test 149 Start 149: plm-adjust-c-check 149: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/<>/Testing/PlmCheckInterval.cmake" 149: Test timeout computed to be: 1500 149: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt 149: -- REGEX is AVE *([-0-9.]*) 149: -- LOWER_THRESH is -819.55 149: -- UPPER_THRESH is -819.54 149: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 149: -- PARSED_VALUE=|-819.546265| 149: Not an error 393/571 Test #149: plm-adjust-c-check .................... Passed 0.01 sec test 152 Start 152: plm-adjust-d-check 152: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-782.97" "-DUPPER_THRESH=-782.96" "-P" "/<>/Testing/PlmCheckInterval.cmake" 152: Test timeout computed to be: 1500 152: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt 152: -- REGEX is AVE *([-0-9.]*) 152: -- LOWER_THRESH is -782.97 152: -- UPPER_THRESH is -782.96 152: -- PARSED VALUE=|MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872| 152: -- PARSED_VALUE=|-782.961060| 152: Not an error 394/571 Test #152: plm-adjust-d-check .................... Passed 0.01 sec test 155 Start 155: plm-adjust-e-check 155: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1298.87" "-DUPPER_THRESH=-1298.86" "-P" "/<>/Testing/PlmCheckInterval.cmake" 155: Test timeout computed to be: 1500 155: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt 155: -- REGEX is AVE *([-0-9.]*) 155: -- LOWER_THRESH is -1298.87 155: -- UPPER_THRESH is -1298.86 155: -- PARSED VALUE=|MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872| 155: -- PARSED_VALUE=|-1298.865601| 155: Not an error 395/571 Test #155: plm-adjust-e-check .................... Passed 0.01 sec test 158 Start 158: plm-adjust-f-check 158: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0196" "-DUPPER_THRESH=-0.0195" "-P" "/<>/Testing/PlmCheckInterval.cmake" 158: Test timeout computed to be: 1500 158: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt 158: -- REGEX is AVE *([-0-9.]*) 158: -- LOWER_THRESH is -0.0196 158: -- UPPER_THRESH is -0.0195 158: -- PARSED VALUE=|MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872| 158: -- PARSED_VALUE=|-0.019504| 158: Not an error 396/571 Test #158: plm-adjust-f-check .................... Passed 0.01 sec test 161 Start 161: plm-adjust-g-check 161: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0001" "-DUPPER_THRESH=0.0001" "-P" "/<>/Testing/PlmCheckInterval.cmake" 161: Test timeout computed to be: 1500 161: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt 161: -- REGEX is AVE *([-0-9.]*) 161: -- LOWER_THRESH is -0.0001 161: -- UPPER_THRESH is 0.0001 161: -- PARSED VALUE=|MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872| 161: -- PARSED_VALUE=|-0.000000| 161: Not an error 397/571 Test #161: plm-adjust-g-check .................... Passed 0.01 sec test 164 Start 164: plm-adjust-h-check 164: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.2481" "-DUPPER_THRESH=-0.248" "-P" "/<>/Testing/PlmCheckInterval.cmake" 164: Test timeout computed to be: 1500 164: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt 164: -- REGEX is AVE *([-0-9.]*) 164: -- LOWER_THRESH is -0.2481 164: -- UPPER_THRESH is -0.248 164: -- PARSED VALUE=|MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872| 164: -- PARSED_VALUE=|-0.248078| 164: Not an error 398/571 Test #164: plm-adjust-h-check .................... Passed 0.01 sec test 167 Start 167: plm-adjust-i-check 167: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.5941" "-DUPPER_THRESH=-921.5940" "-P" "/<>/Testing/PlmCheckInterval.cmake" 167: Test timeout computed to be: 1500 167: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt 167: -- REGEX is AVE *([-0-9.]*) 167: -- LOWER_THRESH is -921.5941 167: -- UPPER_THRESH is -921.5940 167: -- PARSED VALUE=|MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872| 167: -- PARSED_VALUE=|-921.594055| 167: Not an error 399/571 Test #167: plm-adjust-i-check .................... Passed 0.01 sec test 170 Start 170: plm-adjust-j-check 170: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.6276" "-DUPPER_THRESH=-921.6274" "-P" "/<>/Testing/PlmCheckInterval.cmake" 170: Test timeout computed to be: 1500 170: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt 170: -- REGEX is AVE *([-0-9.]*) 170: -- LOWER_THRESH is -921.6276 170: -- UPPER_THRESH is -921.6274 170: -- PARSED VALUE=|MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872| 170: -- PARSED_VALUE=|-921.627502| 170: Not an error 400/571 Test #170: plm-adjust-j-check .................... Passed 0.01 sec test 173 Start 173: plm-boundary-a-check 173: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/<>/Testing/PlmCheckInterval.cmake" 173: Test timeout computed to be: 1500 173: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt 173: -- REGEX is NONZERO *([-0-9.]*) 173: -- LOWER_THRESH is 1056 173: -- UPPER_THRESH is 1056 173: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000| 173: -- PARSED_VALUE=|1056| 173: Not an error 401/571 Test #173: plm-boundary-a-check .................. Passed 0.01 sec test 176 Start 176: plm-boundary-b-check 176: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/<>/Testing/PlmCheckInterval.cmake" 176: Test timeout computed to be: 1500 128: RETVAL: 0 128: STDOUT: Hello world 128: Gonna convert pointsets 128: Pointset: 128: rect-2-0 -26.271700 -52.162899 46.052799 128: rect-2-1 65.870201 -52.543598 46.053001 128: rect-2-2 65.870201 52.543900 46.053001 128: rect-2-3 -25.510201 53.686199 46.053001 128: rect-2-4 -25.891001 -52.162899 -46.052502 128: rect-2-5 66.631699 -53.305099 -46.053001 128: rect-2-6 65.870201 53.305401 -46.053001 128: rect-2-7 -25.129499 53.686199 -46.053001 128: Conversion complete. 128: -26.2717 -52.1629 46.0528 128: 65.8702 -52.5436 46.053 128: 65.8702 52.5439 46.053 128: -25.5102 53.6862 46.053 128: -25.891 -52.1629 -46.0525 128: 66.6317 -53.3051 -46.053 128: 65.8702 53.3054 -46.053 128: -25.1295 53.6862 -46.053 128: Setting landmarks to TPS 128: Computing matrix 128: Setting xform 128: Converting to VF 128: Warping... 128: landmark 0 err 0.796775 mm 128: landmark 1 err 0.857190 mm 128: landmark 2 err 0.875645 mm 128: landmark 3 err 0.888102 mm 128: landmark 4 err 0.831617 mm 128: landmark 5 err 0.807000 mm 128: landmark 6 err 1.057389 mm 128: landmark 7 err 1.167740 mm 128: landmark RMS err 0.918533 mm 128: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha 128: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha 128: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv 128: 128: STDERR: 128: Not an error 402/571 Test #128: landmark-warp-d ....................... Passed 0.10 sec test 179 Start 179: plm-boundary-c-check 179: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=840" "-DUPPER_THRESH=840" "-P" "/<>/Testing/PlmCheckInterval.cmake" 179: Test timeout computed to be: 1500 176: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt 176: -- REGEX is NONZERO *([-0-9.]*) 176: -- LOWER_THRESH is 1056 176: -- UPPER_THRESH is 1056 176: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000| 176: -- PARSED_VALUE=|1056| 176: Not an error 179: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt 179: -- REGEX is NONZERO *([-0-9.]*) 179: -- LOWER_THRESH is 840 179: -- UPPER_THRESH is 840 179: -- PARSED VALUE=|MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000| 179: -- PARSED_VALUE=|840| 179: Not an error 403/571 Test #179: plm-boundary-c-check .................. Passed 0.01 sec test 182 Start 182: plm-boundary-d-check 182: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.614" "-DUPPER_THRESH=2.615" "-P" "/<>/Testing/PlmCheckInterval.cmake" 182: Test timeout computed to be: 1500 404/571 Test #176: plm-boundary-b-check .................. Passed 0.01 sec test 185 Start 185: plm-boundary-e-check 185: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.141" "-DUPPER_THRESH=2.143" "-P" "/<>/Testing/PlmCheckInterval.cmake" 185: Test timeout computed to be: 1500 182: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt 182: -- REGEX is AVE *([-0-9.]*) 182: -- LOWER_THRESH is 2.614 182: -- UPPER_THRESH is 2.615 182: -- PARSED VALUE=|MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000| 182: -- PARSED_VALUE=|2.614500| 182: Not an error 405/571 Test #182: plm-boundary-d-check .................. Passed 0.01 sec test 188 Start 188: plm-convert-dicom-a-check 188: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt" "-DREGEX= 0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/<>/Testing/PlmCheckInterval.cmake" 188: Test timeout computed to be: 1500 185: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt 185: -- REGEX is AVE *([-0-9.]*) 185: -- LOWER_THRESH is 2.141 185: -- UPPER_THRESH is 2.143 185: -- PARSED VALUE=|MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000| 185: -- PARSED_VALUE=|2.142000| 185: Not an error 406/571 Test #185: plm-boundary-e-check .................. Passed 0.01 sec test 191 Start 191: plm-convert-dicom-b-check 191: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt" "-DREGEX=Patient Position . (.*[^ ]) *$" "-DMATCH_STRING=FFS" "-P" "/<>/Testing/PlmCheckString.cmake" 191: Test timeout computed to be: 1500 188: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt 188: -- REGEX is 0 *NVOX *([-0-9.]*) 188: -- LOWER_THRESH is 1648003 188: -- UPPER_THRESH is 1648003 188: -- PARSED VALUE=|S 0 NVOX 1648003| 188: -- PARSED_VALUE=|1648003| 188: Not an error 407/571 Test #188: plm-convert-dicom-a-check ............. Passed 0.01 sec test 194 Start 194: plm-convert-dicom-c-check 194: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=280" "-DUPPER_THRESH=280" "-P" "/<>/Testing/PlmCheckInterval.cmake" 194: Test timeout computed to be: 1500 191: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt 191: -- REGEX is Patient Position . (.*[^ ]) *$ 191: -- MATCH_STRING is FFS 191: -- PARSED VALUE=|Patient Position = FFS | 194: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt 194: -- REGEX is NONZERO *([-0-9.]*) 194: -- LOWER_THRESH is 280 194: -- UPPER_THRESH is 280 194: -- PARSED VALUE=|MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000| 194: -- PARSED_VALUE=|280| 194: Not an error 191: -- PARSED_VALUE=|FFS| 191: -- LENGTH=3 408/571 Test #194: plm-convert-dicom-c-check ............. Passed 0.01 sec test 195 Start 195: plm-convert-dicom-d 195: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/<>/cmake/RUN_CTEST.cmake" 195: Test timeout computed to be: 1500 191: -- |FFS|FFS| 191: Not an error 409/571 Test #191: plm-convert-dicom-b-check ............. Passed 0.01 sec test 196 Start 196: plm-convert-dicom-e 196: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/<>/cmake/RUN_CTEST.cmake" 196: Test timeout computed to be: 1500 195: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 195: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd 195: EXPECTED_ERRNO is 1 196: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 196: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd 196: EXPECTED_ERRNO is 1 195: RETVAL: 1 195: STDOUT: Could not open input file /<>/obj-x86_64-linux-gnu/Testing/non-existant-directory/ for read 195: 195: STDERR: 195: Not an error 410/571 Test #195: plm-convert-dicom-d ................... Passed 0.04 sec test 197 Start 197: plm-convert-dicom-f 197: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-f" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/<>/cmake/RUN_CTEST.cmake" 197: Test timeout computed to be: 1500 197: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 197: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom 197: EXPECTED_ERRNO is 196: RETVAL: 1 196: STDOUT: Sorry, could not load input as any known type. 196: 196: STDERR: 196: Not an error 411/571 Test #196: plm-convert-dicom-e ................... Passed 0.07 sec test 200 Start 200: plm-convert-dicom-donut-a-check 200: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=2623" "-DUPPER_THRESH=2623" "-P" "/<>/Testing/PlmCheckInterval.cmake" 200: Test timeout computed to be: 1500 200: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt 200: -- REGEX is S *0 *NVOX *([-0-9.]*) 200: -- LOWER_THRESH is 2623 200: -- UPPER_THRESH is 2623 200: -- PARSED VALUE=|S 0 NVOX 2623| 200: -- PARSED_VALUE=|2623| 200: Not an error 412/571 Test #200: plm-convert-dicom-donut-a-check ....... Passed 0.01 sec test 203 Start 203: plm-convert-dicom-donut-b-check 203: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1924" "-DUPPER_THRESH=1924" "-P" "/<>/Testing/PlmCheckInterval.cmake" 203: Test timeout computed to be: 1500 203: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt 203: -- REGEX is S *0 *NVOX *([-0-9.]*) 203: -- LOWER_THRESH is 1924 203: -- UPPER_THRESH is 1924 203: -- PARSED VALUE=|S 0 NVOX 1924| 203: -- PARSED_VALUE=|1924| 203: Not an error 413/571 Test #203: plm-convert-dicom-donut-b-check ....... Passed 0.01 sec test 204 Start 204: plm-convert-dicom-donut-c 204: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/<>/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c" "-P" "/<>/cmake/RUN_CTEST.cmake" 204: Test timeout computed to be: 1500 204: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 204: PARMS is convert;--input;/<>/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/<>/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c 204: EXPECTED_ERRNO is 197: RETVAL: 0 197: STDOUT: Loading RDD 197: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549944RTDOSE 197: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549945RTSTRUCT 197: Found DCM_ReferencedFrameOfReferenceSequence! 197: Found DCM_RTReferencedStudySequence! 197: Trying to load rt structure set. 197: Adding structure (1), Foreground 197: Structure 1 has color 255\0\0 197: Trying to load rt dose. 197: Load: DoseGridScaling = 0.000000 197: RTDOSE: dim = 38 38 38 197: ipp = -243.421005 -243.421005 -243.421005 197: spc = 13.157900 13.157900 13.157900 197: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 197: Bits_alloc: 32 197: Bits_stored: 32 197: High_bit: 31 197: Pixel_rep: 0 197: rc = 1, length = 109744, npix = 54872 197: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549944RTDOSE 197: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549945RTSTRUCT 197: Found DCM_ReferencedFrameOfReferenceSequence! 197: Found DCM_RTReferencedStudySequence! 197: Trying to load rt structure set. 197: Adding structure (1), Foreground 197: Structure 1 has color 255\0\0 197: Trying to load rt dose. 197: Load: DoseGridScaling = 0.000000 197: RTDOSE: dim = 38 38 38 197: ipp = -243.421005 -243.421005 -243.421005 197: spc = 13.157900 13.157900 13.157900 197: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 197: Bits_alloc: 32 197: Bits_stored: 32 197: High_bit: 31 197: Pixel_rep: 0 197: rc = 1, length = 109744, npix = 54872 197: Loading RDD complete 197: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10026.1659396364.300824RTSTRUCT 197: Found DCM_ReferencedFrameOfReferenceSequence! 197: Found DCM_RTReferencedStudySequence! 197: Trying to load rt structure set. 197: Adding structure (1), Foreground 197: Structure 1 has color 255\0\0 197: Setting PIH from RDD 197: PIH is: 197: Origin = -243.4211 -243.4211 -243.4211 197: Size = 38 38 38 197: Spacing = 13.1579 13.1579 13.1579 197: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 197: Rt_study_warp: Convert ss_img to cxt. 197: Rt_study_warp: Apply dicom_dir. 197: Rt_study_warp: Set geometry from PIH. 197: Rt_study_warp: Set rasterization geometry. 197: rast_dim = 512 512 7 197: rast_offset = -55.2632 -55.2632 -46.0526 197: rast_spacing = 0.215872 0.215872 13.1579 197: Rt_study_warp: warp and save ss. 197: Warp_and_save_ss: save_ss_img 197: Rt_study_warp: Save dicom. 197: Keyholizing structure 0. 197: Finished! 197: 197: STDERR: 197: Not an error 414/571 Test #197: plm-convert-dicom-f ................... Passed 0.07 sec test 207 Start 207: plm-convert-cxt-check 207: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/<>/Testing/PlmCheckInterval.cmake" 207: Test timeout computed to be: 1500 207: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt 207: -- REGEX is S *0 *NVOX *([-0-9.]*) 207: -- LOWER_THRESH is 1648003 207: -- UPPER_THRESH is 1648003 207: -- PARSED VALUE=|S 0 NVOX 1648003| 207: -- PARSED_VALUE=|1648003| 207: Not an error 415/571 Test #207: plm-convert-cxt-check ................. Passed 0.01 sec test 211 Start 211: plm-convert-dose-scale-check 211: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=77.699" "-DUPPER_THRESH=77.7" "-P" "/<>/Testing/PlmCheckInterval.cmake" 211: Test timeout computed to be: 1500 211: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt 211: -- REGEX is MAX *([-0-9.]*) 211: -- LOWER_THRESH is 77.699 211: -- UPPER_THRESH is 77.7 211: -- PARSED VALUE=|MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872| 211: -- PARSED_VALUE=|77.699997| 211: Not an error 416/571 Test #211: plm-convert-dose-scale-check .......... Passed 0.02 sec test 214 Start 214: plm-crop-a-check-1 214: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=11 16 3" "-P" "/<>/Testing/PlmCheckString.cmake" 214: Test timeout computed to be: 1500 214: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt 214: -- REGEX is ^Size = (.*)$ 214: -- MATCH_STRING is 11 16 3 214: -- PARSED VALUE=|Size = 11 16 3| 214: -- PARSED_VALUE=|11 16 3| 214: -- LENGTH=7 214: -- |11 16 3|11 16 3| 214: Not an error 417/571 Test #214: plm-crop-a-check-1 .................... Passed 0.01 sec test 217 Start 217: plm-crop-b-check-1 217: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=19 11 4" "-P" "/<>/Testing/PlmCheckString.cmake" 217: Test timeout computed to be: 1500 217: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt 217: -- REGEX is ^Size = (.*)$ 217: -- MATCH_STRING is 19 11 4 217: -- PARSED VALUE=|Size = 19 11 4| 217: -- PARSED_VALUE=|19 11 4| 217: -- LENGTH=7 217: -- |19 11 4|19 11 4| 217: Not an error 418/571 Test #217: plm-crop-b-check-1 .................... Passed 0.02 sec test 220 Start 220: plm-crop-c-check-1 220: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=15 15 15" "-P" "/<>/Testing/PlmCheckString.cmake" 220: Test timeout computed to be: 1500 220: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt 220: -- REGEX is ^Size = (.*)$ 220: -- MATCH_STRING is 15 15 15 220: -- PARSED VALUE=|Size = 15 15 15| 220: -- PARSED_VALUE=|15 15 15| 220: -- LENGTH=8 220: -- |15 15 15|15 15 15| 220: Not an error 419/571 Test #220: plm-crop-c-check-1 .................... Passed 0.01 sec test 222 Start 222: plm-dice-a-check-1 222: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.799" "-DUPPER_THRESH=0.801" "-P" "/<>/Testing/PlmCheckInterval.cmake" 222: Test timeout computed to be: 1500 222: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt 222: -- REGEX is ^DICE: *([-0-9.]*) 222: -- LOWER_THRESH is 0.799 222: -- UPPER_THRESH is 0.801 222: -- PARSED VALUE=|DICE: 0.800000| 222: -- PARSED_VALUE=|0.800000| 222: Not an error 420/571 Test #222: plm-dice-a-check-1 .................... Passed 0.01 sec test 224 Start 224: plm-dice-b-check-1 224: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 224: Test timeout computed to be: 1500 224: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt 224: -- REGEX is ^DICE: *([-0-9.]*) 224: -- LOWER_THRESH is 0.999 224: -- UPPER_THRESH is 1.000 224: -- PARSED VALUE=|DICE: 1.000000| 224: -- PARSED_VALUE=|1.000000| 224: Not an error 421/571 Test #224: plm-dice-b-check-1 .................... Passed 0.01 sec test 226 Start 226: plm-dice-c-check-1 226: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/<>/Testing/PlmCheckInterval.cmake" 226: Test timeout computed to be: 1500 226: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 226: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 226: -- LOWER_THRESH is 26.31 226: -- UPPER_THRESH is 26.32 226: -- PARSED VALUE=|Hausdorff distance = 26.315790| 226: -- PARSED_VALUE=|26.315790| 226: Not an error 422/571 Test #226: plm-dice-c-check-1 .................... Passed 0.02 sec test 227 Start 227: plm-dice-c-check-2 227: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=3.40" "-DUPPER_THRESH=3.41" "-P" "/<>/Testing/PlmCheckInterval.cmake" 227: Test timeout computed to be: 1500 204: RETVAL: 0 204: STDOUT: Trying to load ss_list: /<>/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt 204: Setting PIH from M_IMG 204: PIH is: 204: Origin = -25.0000 -25.0000 -25.0000 204: Size = 38 38 38 204: Spacing = 1.3158 1.3158 1.3158 204: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 204: Rt_study_warp: Convert ss_img to cxt. 204: Doing extraction 204: Rt_study_warp: Apply dicom_dir. 204: Rt_study_warp: Set geometry from PIH. 204: Rt_study_warp: Set rasterization geometry. 204: rast_dim = 512 512 14 204: rast_offset = -10.3618 -10.3618 -9.21053 204: rast_spacing = 0.0404759 0.0404759 1.31579 204: Rt_study_warp: warp and save ss. 204: Warp_and_save_ss: save_ss_img 204: Rt_study_warp: Save dicom. 204: Keyholizing structure 0. 204: Finished! 204: 204: STDERR: 204: Not an error 423/571 Test #204: plm-convert-dicom-donut-c ............. Passed 0.14 sec test 228 Start 228: plm-dice-c-check-3 228: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=7.11" "-DUPPER_THRESH=7.12" "-P" "/<>/Testing/PlmCheckInterval.cmake" 228: Test timeout computed to be: 1500 227: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 227: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) 227: -- LOWER_THRESH is 3.40 227: -- UPPER_THRESH is 3.41 227: -- PARSED VALUE=|Avg average Hausdorff distance = 3.406955| 227: -- PARSED_VALUE=|3.406955| 227: Not an error 424/571 Test #227: plm-dice-c-check-2 .................... Passed 0.02 sec test 229 Start 229: plm-dice-c-check-4 229: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=8.53" "-DUPPER_THRESH=8.54" "-P" "/<>/Testing/PlmCheckInterval.cmake" 229: Test timeout computed to be: 1500 228: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 228: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*) 228: -- LOWER_THRESH is 7.11 228: -- UPPER_THRESH is 7.12 228: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 7.115030| 228: -- PARSED_VALUE=|7.115030| 228: Not an error 425/571 Test #228: plm-dice-c-check-3 .................... Passed 0.02 sec test 230 Start 230: plm-dice-c-check-5 230: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/<>/Testing/PlmCheckInterval.cmake" 230: Test timeout computed to be: 1500 229: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 229: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) 229: -- LOWER_THRESH is 8.53 229: -- UPPER_THRESH is 8.54 229: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 8.534851| 229: -- PARSED_VALUE=|8.534851| 229: Not an error 426/571 Test #229: plm-dice-c-check-4 .................... Passed 0.02 sec test 232 Start 232: plm-dice-d-check-1 232: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=45.575" "-DUPPER_THRESH=45.585" "-P" "/<>/Testing/PlmCheckInterval.cmake" 232: Test timeout computed to be: 1500 230: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 230: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) 230: -- LOWER_THRESH is 26.31 230: -- UPPER_THRESH is 26.32 230: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 26.315790| 230: -- PARSED_VALUE=|26.315790| 230: Not an error 427/571 Test #230: plm-dice-c-check-5 .................... Passed 0.02 sec test 233 Start 233: plm-dice-d-check-2 233: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=7.07" "-DUPPER_THRESH=7.08" "-P" "/<>/Testing/PlmCheckInterval.cmake" 233: Test timeout computed to be: 1500 232: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 232: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 232: -- LOWER_THRESH is 45.575 232: -- UPPER_THRESH is 45.585 232: -- PARSED VALUE=|Hausdorff distance = 45.580288| 232: -- PARSED_VALUE=|45.580288| 232: Not an error 428/571 Test #232: plm-dice-d-check-1 .................... Passed 0.02 sec test 234 Start 234: plm-dice-d-check-3 234: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=14.89" "-DUPPER_THRESH=14.90" "-P" "/<>/Testing/PlmCheckInterval.cmake" 234: Test timeout computed to be: 1500 233: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 233: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) 233: -- LOWER_THRESH is 7.07 233: -- UPPER_THRESH is 7.08 233: -- PARSED VALUE=|Avg average Hausdorff distance = 7.072703| 233: -- PARSED_VALUE=|7.072703| 233: Not an error 429/571 Test #233: plm-dice-d-check-2 .................... Passed 0.02 sec test 235 Start 235: plm-dice-d-check-4 235: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=18.38" "-DUPPER_THRESH=18.39" "-P" "/<>/Testing/PlmCheckInterval.cmake" 235: Test timeout computed to be: 1500 234: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 234: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*) 234: -- LOWER_THRESH is 14.89 234: -- UPPER_THRESH is 14.90 234: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 14.894061| 234: -- PARSED_VALUE=|14.894061| 234: Not an error 235: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 235: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) 235: -- LOWER_THRESH is 18.38 235: -- UPPER_THRESH is 18.39 235: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 18.384613| 235: -- PARSED_VALUE=|18.384613| 235: Not an error 430/571 Test #234: plm-dice-d-check-3 .................... Passed 0.02 sec test 236 Start 236: plm-dice-d-check-5 236: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=32.89" "-DUPPER_THRESH=32.90" "-P" "/<>/Testing/PlmCheckInterval.cmake" 236: Test timeout computed to be: 1500 431/571 Test #235: plm-dice-d-check-4 .................... Passed 0.01 sec test 238 Start 238: plm-dice-e-check-1 238: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.96550" "-DUPPER_THRESH=0.96554" "-P" "/<>/Testing/PlmCheckInterval.cmake" 238: Test timeout computed to be: 1500 236: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 236: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) 236: -- LOWER_THRESH is 32.89 236: -- UPPER_THRESH is 32.90 236: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 32.894737| 236: -- PARSED_VALUE=|32.894737| 236: Not an error 432/571 Test #236: plm-dice-d-check-5 .................... Passed 0.01 sec test 239 Start 239: plm-dice-e-check-2 239: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=4" "-DUPPER_THRESH=4" "-P" "/<>/Testing/PlmCheckInterval.cmake" 239: Test timeout computed to be: 1500 238: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt 238: -- REGEX is ^DICE: *([-0-9.]*) 238: -- LOWER_THRESH is 0.96550 238: -- UPPER_THRESH is 0.96554 238: -- PARSED VALUE=|DICE: 0.965517| 238: -- PARSED_VALUE=|0.965517| 238: Not an error 433/571 Test #238: plm-dice-e-check-1 .................... Passed 0.01 sec test 241 Start 241: plm-dice-f-check-1 241: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=1" "-DUPPER_THRESH=1" "-P" "/<>/Testing/PlmCheckInterval.cmake" 241: Test timeout computed to be: 1500 239: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt 239: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 239: -- LOWER_THRESH is 4 239: -- UPPER_THRESH is 4 239: -- PARSED VALUE=|Hausdorff distance = 4.000000| 239: -- PARSED_VALUE=|4.000000| 239: Not an error 434/571 Test #239: plm-dice-e-check-2 .................... Passed 0.01 sec test 242 Start 242: plm-dice-f-check-2 242: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=0" "-DUPPER_THRESH=0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 242: Test timeout computed to be: 1500 242: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt 242: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 242: -- LOWER_THRESH is 0 242: -- UPPER_THRESH is 0 242: -- PARSED VALUE=|Hausdorff distance = 0.000000| 242: -- PARSED_VALUE=|0.000000| 242: Not an error 435/571 Test #242: plm-dice-f-check-2 .................... Passed 0.01 sec test 243 Start 243: plm-dmap-a 243: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;maurer;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 243: Test timeout computed to be: 1500 241: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt 241: -- REGEX is ^DICE: *([-0-9.]*) 241: -- LOWER_THRESH is 1 241: -- UPPER_THRESH is 1 241: -- PARSED VALUE=|DICE: 1.000000| 241: -- PARSED_VALUE=|1.000000| 241: Not an error 436/571 Test #241: plm-dice-f-check-1 .................... Passed 0.01 sec test 245 Start 245: plm-dmap-c 245: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;song_maurer;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 245: Test timeout computed to be: 1500 243: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 243: PARMS is dmap;--algorithm;maurer;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha 243: EXPECTED_ERRNO is 245: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 245: PARMS is dmap;--algorithm;song_maurer;--input;/<>/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha 245: EXPECTED_ERRNO is 243: RETVAL: 0 243: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha 243: 243: STDERR: 243: Not an error 437/571 Test #243: plm-dmap-a ............................ Passed 0.10 sec test 247 Start 247: plm-dvh-a-check-1 247: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15,([-0-9.]*)," "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 247: Test timeout computed to be: 1500 247: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 247: -- REGEX is ^15,([-0-9.]*), 247: -- LOWER_THRESH is 0.999 247: -- UPPER_THRESH is 1.0 247: -- PARSED VALUE=|15,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| 247: -- PARSED_VALUE=|1| 247: Not an error 438/571 Test #247: plm-dvh-a-check-1 ..................... Passed 0.02 sec test 248 Start 248: plm-dvh-a-check-2 248: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15.5,([-0-9.]*)," "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/<>/Testing/PlmCheckInterval.cmake" 248: Test timeout computed to be: 1500 248: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 248: -- REGEX is ^15.5,([-0-9.]*), 248: -- LOWER_THRESH is 0.0 248: -- UPPER_THRESH is 0.001 248: -- PARSED VALUE=|15.5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| 248: -- PARSED_VALUE=|0| 248: Not an error 439/571 Test #248: plm-dvh-a-check-2 ..................... Passed 0.03 sec test 250 Start 250: plm-dvh-b-check-1 250: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15,([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 250: Test timeout computed to be: 1500 250: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 250: -- REGEX is ^15,([-0-9.]*) 250: -- LOWER_THRESH is 0.999 250: -- UPPER_THRESH is 1.0 250: -- PARSED VALUE=|15,1| 250: -- PARSED_VALUE=|1| 250: Not an error 440/571 Test #250: plm-dvh-b-check-1 ..................... Passed 0.01 sec test 251 Start 251: plm-dvh-b-check-2 251: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15.5,([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/<>/Testing/PlmCheckInterval.cmake" 251: Test timeout computed to be: 1500 251: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 251: -- REGEX is ^15.5,([-0-9.]*) 251: -- LOWER_THRESH is 0.0 251: -- UPPER_THRESH is 0.001 251: -- PARSED VALUE=|15.5,0| 251: -- PARSED_VALUE=|0| 251: Not an error 441/571 Test #251: plm-dvh-b-check-2 ..................... Passed 0.03 sec test 254 Start 254: plm-fill-a-check 254: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.1" "-DUPPER_THRESH=+0.1" "-P" "/<>/Testing/PlmCheckInterval.cmake" 254: Test timeout computed to be: 1500 254: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt 254: -- REGEX is AVE *([-0-9.]*) 254: -- LOWER_THRESH is -0.1 254: -- UPPER_THRESH is +0.1 254: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| 254: -- PARSED_VALUE=|0.000000| 254: Not an error 442/571 Test #254: plm-fill-a-check ...................... Passed 0.02 sec test 257 Start 257: plm-mask-a-check 257: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/<>/Testing/PlmCheckInterval.cmake" 257: Test timeout computed to be: 1500 257: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt 257: -- REGEX is AVE *([-0-9.]*) 257: -- LOWER_THRESH is -1000.1 257: -- UPPER_THRESH is -999.9 257: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| 257: -- PARSED_VALUE=|-1000.000000| 257: Not an error 443/571 Test #257: plm-mask-a-check ...................... Passed 0.01 sec test 260 Start 260: plm-gamma-a-check 260: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.023" "-DUPPER_THRESH=0.024" "-P" "/<>/Testing/PlmCheckInterval.cmake" 260: Test timeout computed to be: 1500 245: RETVAL: 0 245: STDOUT: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha 245: 245: STDERR: 245: Not an error 444/571 Test #245: plm-dmap-c ............................ Passed 0.23 sec test 263 Start 263: plm-gamma-b-check 263: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.245" "-DUPPER_THRESH=0.255" "-P" "/<>/Testing/PlmCheckInterval.cmake" 263: Test timeout computed to be: 1500 260: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt 260: -- REGEX is AVE *([-0-9.]*) 260: -- LOWER_THRESH is 0.023 260: -- UPPER_THRESH is 0.024 260: -- PARSED VALUE=|MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000| 260: -- PARSED_VALUE=|0.023500| 260: Not an error 445/571 Test #260: plm-gamma-a-check ..................... Passed 0.01 sec test 265 Start 265: plm-gamma-c-check 265: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=90.6" "-DUPPER_THRESH=90.8" "-P" "/<>/Testing/PlmCheckInterval.cmake" 265: Test timeout computed to be: 1500 263: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt 263: -- REGEX is AVE *([-0-9.]*) 263: -- LOWER_THRESH is 0.245 265: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt 265: -- REGEX is Pass rate = *([-0-9.]*) 265: -- LOWER_THRESH is 90.6 265: -- UPPER_THRESH is 90.8 265: -- PARSED VALUE=|Pass rate = 90.719998 %| 265: -- PARSED_VALUE=|90.719998| 265: Not an error 263: -- UPPER_THRESH is 0.255 263: -- PARSED VALUE=|MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000| 446/571 Test #265: plm-gamma-c-check ..................... Passed 0.01 sec test 267 Start 267: plm-gamma-d-check 267: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=89.9" "-DUPPER_THRESH=90.1" "-P" "/<>/Testing/PlmCheckInterval.cmake" 267: Test timeout computed to be: 1500 263: -- PARSED_VALUE=|0.250000| 263: Not an error 447/571 Test #263: plm-gamma-b-check ..................... Passed 0.01 sec test 270 Start 270: plm-maximum-a-check 270: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 270: Test timeout computed to be: 1500 267: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt 267: -- REGEX is Pass rate = *([-0-9.]*) 267: -- LOWER_THRESH is 89.9 267: -- UPPER_THRESH is 90.1 267: -- PARSED VALUE=|Pass rate = 89.999998 %| 267: -- PARSED_VALUE=|89.999998| 267: Not an error 448/571 Test #267: plm-gamma-d-check ..................... Passed 0.01 sec test 273 Start 273: plm-multiply-a-check 273: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 273: Test timeout computed to be: 1500 273: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt 273: -- REGEX is AVE *([-0-9.]*) 273: -- LOWER_THRESH is 0.0 273: -- UPPER_THRESH is 0.0 273: -- PARSED VALUE=|MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872| 273: -- PARSED_VALUE=|0.000000| 273: Not an error 449/571 Test #273: plm-multiply-a-check .................. Passed 0.01 sec test 276 Start 276: plm-multiply-vf-a-check 276: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=100.000" "-DUPPER_THRESH=100.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 276: Test timeout computed to be: 1500 270: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt 270: -- REGEX is AVE *([-0-9.]*) 270: -- LOWER_THRESH is 0.0 270: -- UPPER_THRESH is 0.0 270: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| 276: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt 276: -- REGEX is Mean: *([-0-9.]*) 276: -- LOWER_THRESH is 100.000 276: -- UPPER_THRESH is 100.000 276: -- PARSED VALUE=|Mean: 100.000 100.000 100.000| 276: -- PARSED_VALUE=|100.000| 276: Not an error 270: -- PARSED_VALUE=|0.000000| 450/571 Test #276: plm-multiply-vf-a-check ............... Passed 0.01 sec test 277 Start 277: plm-usage 277: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-usage" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=" "-P" "/<>/cmake/RUN_CTEST.cmake" 277: Test timeout computed to be: 1500 270: Not an error 451/571 Test #270: plm-maximum-a-check ................... Passed 0.02 sec test 280 Start 280: plm-reg-align-center-check 280: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt" "-DREGEX=MAE *([-0-9.]*)" "-DLOWER_THRESH=-0.005" "-DUPPER_THRESH=0.005" "-P" "/<>/Testing/PlmCheckInterval.cmake" 280: Test timeout computed to be: 1500 280: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt 277: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 277: PARMS is 277: EXPECTED_ERRNO is 280: -- REGEX is MAE *([-0-9.]*) 280: -- LOWER_THRESH is -0.005 280: -- UPPER_THRESH is 0.005 280: -- PARSED VALUE=|MAE 0.000002 MSE 0.000000| 280: -- PARSED_VALUE=|0.000002| 280: Not an error 452/571 Test #280: plm-reg-align-center-check ............ Passed 0.03 sec test 283 Start 283: plm-reg-itk-translation-check 283: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-677.6" "-DUPPER_THRESH=-677.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 283: Test timeout computed to be: 1500 283: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt 283: -- REGEX is AVE *([-0-9.]*) 283: -- LOWER_THRESH is -677.6 283: -- UPPER_THRESH is -677.5 283: -- PARSED VALUE=|MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872| 283: -- PARSED_VALUE=|-677.557922| 283: Not an error 453/571 Test #283: plm-reg-itk-translation-check ......... Passed 0.01 sec test 286 Start 286: plm-reg-itk-rigid-a-check-1 286: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/<>/Testing/PlmCheckInterval.cmake" 286: Test timeout computed to be: 1500 286: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt 286: -- REGEX is AVE *([-0-9.]*) 286: -- LOWER_THRESH is -939.3 286: -- UPPER_THRESH is -939.1 286: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872| 286: -- PARSED_VALUE=|-939.203979| 286: Not an error 454/571 Test #286: plm-reg-itk-rigid-a-check-1 ........... Passed 0.01 sec test 288 Start 288: plm-reg-itk-rigid-a-check-2 288: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/<>/Testing/PlmCheckInterval.cmake" 288: Test timeout computed to be: 1500 288: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt 288: -- REGEX is AVE *([-0-9.]*) 288: -- LOWER_THRESH is -939.3 288: -- UPPER_THRESH is -939.1 288: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872| 288: -- PARSED_VALUE=|-939.203979| 288: Not an error 455/571 Test #288: plm-reg-itk-rigid-a-check-2 ........... Passed 0.02 sec test 291 Start 291: plm-reg-itk-similarity-check-1 291: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-981.3" "-DUPPER_THRESH=-981.1" "-P" "/<>/Testing/PlmCheckInterval.cmake" 291: Test timeout computed to be: 1500 277: RETVAL: 0 277: STDOUT: plastimatch version 1.9.3 277: Usage: plastimatch command [options] 277: Commands: 277: add adjust average bbox boundary 277: crop compare compose convert dice 277: diff dmap dose drr dvh 277: fdk fill filter gamma header 277: intersect jacobian lm-warp mabs mask 277: maximum ml-convert multiply probe register 277: resample scale segment sift stats 277: synth synth-vf threshold thumbnail union 277: warp wed xf-convert xf-invert 277: 277: For detailed usage of a specific command, type: 277: plastimatch command 277: 277: STDERR: 277: Not an error 291: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt 291: -- REGEX is AVE *([-0-9.]*) 291: -- LOWER_THRESH is -981.3 291: -- UPPER_THRESH is -981.1 291: -- PARSED VALUE=|MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872| 291: -- PARSED_VALUE=|-981.187012| 291: Not an error 456/571 Test #277: plm-usage ............................. Passed 0.09 sec test 293 Start 293: plm-reg-itk-similarity-check-2 293: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-940.8" "-DUPPER_THRESH=-940.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 293: Test timeout computed to be: 1500 457/571 Test #291: plm-reg-itk-similarity-check-1 ........ Passed 0.02 sec test 296 Start 296: plm-reg-itk-bspline-check-1 296: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/<>/Testing/PlmCheckInterval.cmake" 296: Test timeout computed to be: 1500 293: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-2.stdout.txt 293: -- REGEX is AVE *([-0-9.]*) 293: -- LOWER_THRESH is -940.8 293: -- UPPER_THRESH is -940.5 293: -- PARSED VALUE=|MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872| 293: -- PARSED_VALUE=|-940.684265| 293: Not an error 458/571 Test #293: plm-reg-itk-similarity-check-2 ........ Passed 0.01 sec test 298 Start 298: plm-reg-itk-demons-check-1 298: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=34.95" "-P" "/<>/Testing/PlmCheckInterval.cmake" 298: Test timeout computed to be: 1500 296: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt 296: -- REGEX is AVE *([-0-9.]*) 296: -- LOWER_THRESH is -764.0 296: -- UPPER_THRESH is -763.6 296: -- PARSED VALUE=|MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872| 296: -- PARSED_VALUE=|-763.817810| 296: Not an error 459/571 Test #296: plm-reg-itk-bspline-check-1 ........... Passed 0.02 sec test 300 Start 300: plm-reg-itk-demons-check-2 300: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-755.3" "-DUPPER_THRESH=-754.6" "-P" "/<>/Testing/PlmCheckInterval.cmake" 300: Test timeout computed to be: 1500 298: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt 298: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 298: -- LOWER_THRESH is 31.85 298: -- UPPER_THRESH is 34.95 298: -- PARSED VALUE=|VF_MAX = 97.6986 VF_AVG = 31.9237| 300: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt 300: -- REGEX is AVE *([-0-9.]*) 300: -- LOWER_THRESH is -755.3 300: -- UPPER_THRESH is -754.6 300: -- PARSED VALUE=|MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872| 300: -- PARSED_VALUE=|-754.915161| 300: Not an error 298: -- PARSED_VALUE=|31.9237| 298: Not an error 460/571 Test #298: plm-reg-itk-demons-check-1 ............ Passed 0.02 sec test 302 Start 302: plm-reg-itk-demons-diff-check-1 302: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.2" "-DUPPER_THRESH=31.3" "-P" "/<>/Testing/PlmCheckInterval.cmake" 302: Test timeout computed to be: 1500 461/571 Test #300: plm-reg-itk-demons-check-2 ............ Passed 0.02 sec test 304 Start 304: plm-reg-itk-demons-logd-check-1 304: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=32.65" "-DUPPER_THRESH=32.75" "-P" "/<>/Testing/PlmCheckInterval.cmake" 304: Test timeout computed to be: 1500 304: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt 304: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 304: -- LOWER_THRESH is 32.65 304: -- UPPER_THRESH is 32.75 304: -- PARSED VALUE=|VF_MAX = 112.668 VF_AVG = 32.7138| 304: -- PARSED_VALUE=|32.7138| 304: Not an error 462/571 Test #304: plm-reg-itk-demons-logd-check-1 ....... Passed 0.01 sec test 306 Start 306: plm-reg-itk-demons-sym-logd-check-1 306: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=35.95" "-P" "/<>/Testing/PlmCheckInterval.cmake" 306: Test timeout computed to be: 1500 302: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt 302: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 302: -- LOWER_THRESH is 31.2 302: -- UPPER_THRESH is 31.3 302: -- PARSED VALUE=|VF_MAX = 102.433 VF_AVG = 31.2783| 302: -- PARSED_VALUE=|31.2783| 302: Not an error 463/571 Test #302: plm-reg-itk-demons-diff-check-1 ....... Passed 0.02 sec test 309 Start 309: plm-bsp-mse-c-check 309: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 309: Test timeout computed to be: 1500 306: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt 306: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 306: -- LOWER_THRESH is 31.85 306: -- UPPER_THRESH is 35.95 306: -- PARSED VALUE=|VF_MAX = 109.365 VF_AVG = 31.9237| 306: -- PARSED_VALUE=|31.9237| 306: Not an error 464/571 Test #306: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.01 sec test 312 Start 312: plm-bsp-mse-g-check 312: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 312: Test timeout computed to be: 1500 312: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt 312: -- REGEX is AVE *([-0-9.]*) 312: -- LOWER_THRESH is -746.0 312: -- UPPER_THRESH is -744.5 312: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 312: -- PARSED_VALUE=|-745.347717| 312: Not an error 465/571 Test #312: plm-bsp-mse-g-check ................... Passed 0.01 sec test 315 Start 315: plm-bsp-mse-h-check 315: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 315: Test timeout computed to be: 1500 309: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt 309: -- REGEX is AVE *([-0-9.]*) 309: -- LOWER_THRESH is -746.0 309: -- UPPER_THRESH is -744.5 309: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 309: -- PARSED_VALUE=|-745.347717| 309: Not an error 466/571 Test #309: plm-bsp-mse-c-check ................... Passed 0.02 sec test 318 Start 318: plm-bsp-mse-i-check 318: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 318: Test timeout computed to be: 1500 569: RETVAL: 0 569: STDOUT: Skin file defined. Modifying input ct... 569: FPD = 320.500029, BPD = 821.195355 569: 100 100 501 569: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.nrrd 569: Computing wed ct volume... 569: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/wed-a-wed-ct.mha 569: done. 569: 100 100 501 569: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-ct.nrrd 569: 569: STDERR: 569: Not an error 467/571 Test #569: wed-a ................................. Passed 1.36 sec test 321 Start 321: plm-bsp-mse-k-check 321: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 321: Test timeout computed to be: 1500 318: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt 318: -- REGEX is AVE *([-0-9.]*) 318: -- LOWER_THRESH is -746.0 318: -- UPPER_THRESH is -744.5 318: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 318: -- PARSED_VALUE=|-745.347717| 318: Not an error 468/571 Test #318: plm-bsp-mse-i-check ................... Passed 0.01 sec test 324 Start 324: plm-bsp-mse-l-check 324: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 324: Test timeout computed to be: 1500 315: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt 315: -- REGEX is AVE *([-0-9.]*) 315: -- LOWER_THRESH is -746.0 315: -- UPPER_THRESH is -744.5 315: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 315: -- PARSED_VALUE=|-745.347717| 315: Not an error 469/571 Test #315: plm-bsp-mse-h-check ................... Passed 0.01 sec test 326 Start 326: plm-bsp-mse-o-stats 326: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 326: Test timeout computed to be: 1500 321: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt 321: -- REGEX is AVE *([-0-9.]*) 321: -- LOWER_THRESH is -746.0 321: -- UPPER_THRESH is -744.5 321: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 321: -- PARSED_VALUE=|-745.347717| 321: Not an error 324: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt 324: -- REGEX is AVE *([-0-9.]*) 324: -- LOWER_THRESH is -746.0 324: -- UPPER_THRESH is -744.5 324: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 324: -- PARSED_VALUE=|-745.347717| 324: Not an error 470/571 Test #321: plm-bsp-mse-k-check ................... Passed 0.01 sec test 328 Start 328: plm-bsp-mse-p-stats 328: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 328: Test timeout computed to be: 1500 471/571 Test #324: plm-bsp-mse-l-check ................... Passed 0.01 sec test 330 Start 330: plm-bsp-mse-q-stats 330: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 330: Test timeout computed to be: 1500 330: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 330: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 330: EXPECTED_ERRNO is 328: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 328: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha 328: EXPECTED_ERRNO is 326: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 326: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha 326: EXPECTED_ERRNO is 330: RETVAL: 0 330: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 330: 330: STDERR: 330: Not an error 472/571 Test #330: plm-bsp-mse-q-stats ................... Passed 0.08 sec test 332 Start 332: plm-bsp-mse-r-stats 332: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 332: Test timeout computed to be: 1500 332: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 332: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 332: EXPECTED_ERRNO is 328: RETVAL: 0 328: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 328: 328: STDERR: 328: Not an error 473/571 Test #328: plm-bsp-mse-p-stats ................... Passed 0.11 sec test 335 Start 335: plm-bsp-mi-c-check 335: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 335: Test timeout computed to be: 1500 335: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-stats.stdout.txt 335: -- REGEX is AVE *([-0-9.]*) 335: -- LOWER_THRESH is -114.0 335: -- UPPER_THRESH is -113.0 335: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872| 335: -- PARSED_VALUE=|-113.473007| 335: Not an error 474/571 Test #335: plm-bsp-mi-c-check .................... Passed 0.02 sec test 338 Start 338: plm-bsp-mi-c-2-check 338: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-129.5" "-DUPPER_THRESH=-128.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 338: Test timeout computed to be: 1500 326: RETVAL: 0 326: STDOUT: MIN -999.989990 AVE -743.121460 MAX 0.000000 NONZERO 46674 NUMVOX 54872 326: 326: STDERR: 326: Not an error 475/571 Test #326: plm-bsp-mse-o-stats ................... Passed 0.14 sec test 341 Start 341: plm-bsp-mi-k-check 341: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 341: Test timeout computed to be: 1500 338: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt 338: -- REGEX is AVE *([-0-9.]*) 338: -- LOWER_THRESH is -129.5 338: -- UPPER_THRESH is -128.5 338: -- PARSED VALUE=|MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872| 338: -- PARSED_VALUE=|-128.919357| 338: Not an error 476/571 Test #338: plm-bsp-mi-c-2-check .................. Passed 0.01 sec test 344 Start 344: plm-bsp-gm-k-check 344: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-122.5" "-DUPPER_THRESH=-121.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 344: Test timeout computed to be: 1500 344: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt 344: -- REGEX is AVE *([-0-9.]*) 344: -- LOWER_THRESH is -122.5 344: -- UPPER_THRESH is -121.5 341: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-stats.stdout.txt 341: -- REGEX is AVE *([-0-9.]*) 341: -- LOWER_THRESH is -114.0 341: -- UPPER_THRESH is -113.0 341: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872| 341: -- PARSED_VALUE=|-113.473007| 344: -- PARSED VALUE=|MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872| 344: -- PARSED_VALUE=|-121.961853| 341: Not an error 344: Not an error 477/571 Test #341: plm-bsp-mi-k-check .................... Passed 0.01 sec test 346 Start 346: plm-bsp-sm-multi-a-stats 346: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 346: Test timeout computed to be: 1500 478/571 Test #344: plm-bsp-gm-k-check .................... Passed 0.01 sec test 349 Start 349: plm-bsp-openmp-check 349: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 349: Test timeout computed to be: 1500 346: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 346: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha 346: EXPECTED_ERRNO is 349: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt 349: -- REGEX is AVE *([-0-9.]*) 349: -- LOWER_THRESH is -746.0 349: -- UPPER_THRESH is -744.5 349: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 349: -- PARSED_VALUE=|-745.347717| 349: Not an error 479/571 Test #349: plm-bsp-openmp-check .................. Passed 0.01 sec test 351 Start 351: plm-bsp-resume-stats 351: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 351: Test timeout computed to be: 1500 351: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 351: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha 351: EXPECTED_ERRNO is 332: RETVAL: 0 332: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 332: 332: STDERR: 332: Not an error 480/571 Test #332: plm-bsp-mse-r-stats ................... Passed 0.10 sec test 353 Start 353: plm-bsp-logfile-check 353: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt" "-DREGEX=\[.*, 5] MSE *([-0-9.]*)" "-DLOWER_THRESH=281.5" "-DUPPER_THRESH=282.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 353: Test timeout computed to be: 1500 353: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt 353: -- REGEX is \[.*, 5] MSE *([-0-9.]*) 353: -- LOWER_THRESH is 281.5 353: -- UPPER_THRESH is 282.5 353: -- PARSED VALUE=|[ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.000 s ]| 353: -- PARSED_VALUE=|282.038| 353: Not an error 481/571 Test #353: plm-bsp-logfile-check ................. Passed 0.01 sec test 356 Start 356: plm-bsp-ushort-check 356: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=106.6" "-DUPPER_THRESH=107.6" "-P" "/<>/Testing/PlmCheckInterval.cmake" 356: Test timeout computed to be: 1500 356: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt 356: -- REGEX is AVE *([-0-9.]*) 356: -- LOWER_THRESH is 106.6 356: -- UPPER_THRESH is 107.6 356: -- PARSED VALUE=|MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872| 356: -- PARSED_VALUE=|107.313034| 356: Not an error 482/571 Test #356: plm-bsp-ushort-check .................. Passed 0.01 sec test 359 Start 359: plm-bsp-double-check 359: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=107.6" "-DUPPER_THRESH=108.6" "-P" "/<>/Testing/PlmCheckInterval.cmake" 359: Test timeout computed to be: 1500 359: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt 359: -- REGEX is AVE *([-0-9.]*) 359: -- LOWER_THRESH is 107.6 359: -- UPPER_THRESH is 108.6 359: -- PARSED VALUE=|MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872| 359: -- PARSED_VALUE=|108.147682| 359: Not an error 483/571 Test #359: plm-bsp-double-check .................. Passed 0.01 sec test 360 Start 360: plm-bsp-itk-output 360: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-itk-output" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/Testing/Data/plm-bsp-itk-output.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 360: Test timeout computed to be: 1500 360: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 360: PARMS is /<>/Testing/Data/plm-bsp-itk-output.txt 360: EXPECTED_ERRNO is 346: RETVAL: 0 346: STDOUT: MIN -999.995789 AVE -886.449097 MAX -1.453729 NONZERO 54872 NUMVOX 54872 346: 346: STDERR: 346: Not an error 484/571 Test #346: plm-bsp-sm-multi-a-stats .............. Passed 0.08 sec test 363 Start 363: plm-bsp-char-output-check 363: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt" "-DREGEX=MIN *([-0-9.]*)" "-DLOWER_THRESH=-128.1" "-DUPPER_THRESH=-127.9" "-P" "/<>/Testing/PlmCheckInterval.cmake" 363: Test timeout computed to be: 1500 363: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt 363: -- REGEX is MIN *([-0-9.]*) 363: -- LOWER_THRESH is -128.1 363: -- UPPER_THRESH is -127.9 363: -- PARSED VALUE=|MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872| 363: -- PARSED_VALUE=|-128.000000| 363: Not an error 485/571 Test #363: plm-bsp-char-output-check ............. Passed 0.01 sec test 367 Start 367: plm-bsp-regularize-none-check 367: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.31" "-DUPPER_THRESH=0.32" "-P" "/<>/Testing/PlmCheckInterval.cmake" 367: Test timeout computed to be: 1500 367: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt 367: -- REGEX is MINJAC *([-0-9.]*) 367: -- LOWER_THRESH is 0.31 367: -- UPPER_THRESH is 0.32 367: -- PARSED VALUE=|Jacobian: MINJAC 0.315393 MAXJAC 1.06557| 367: -- PARSED_VALUE=|0.315393| 367: Not an error 486/571 Test #367: plm-bsp-regularize-none-check ......... Passed 0.01 sec test 370 Start 370: plm-bsp-regularize-analytic-check 370: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.415" "-DUPPER_THRESH=0.425" "-P" "/<>/Testing/PlmCheckInterval.cmake" 370: Test timeout computed to be: 1500 370: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt 370: -- REGEX is MINJAC *([-0-9.]*) 370: -- LOWER_THRESH is 0.415 370: -- UPPER_THRESH is 0.425 370: -- PARSED VALUE=|Jacobian: MINJAC 0.419027 MAXJAC 1.04996| 370: -- PARSED_VALUE=|0.419027| 370: Not an error 487/571 Test #370: plm-bsp-regularize-analytic-check ..... Passed 0.01 sec test 373 Start 373: plm-bsp-regularize-numeric-check 373: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.440" "-DUPPER_THRESH=0.445" "-P" "/<>/Testing/PlmCheckInterval.cmake" 373: Test timeout computed to be: 1500 351: RETVAL: 0 351: STDOUT: MIN -999.977539 AVE -731.734009 MAX 0.000000 NONZERO 46415 NUMVOX 54872 351: 351: STDERR: 351: Not an error 488/571 Test #351: plm-bsp-resume-stats .................. Passed 0.11 sec test 374 Start 374: plm-bsp-landmark-a 374: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 374: Test timeout computed to be: 1500 373: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt 373: -- REGEX is MINJAC *([-0-9.]*) 373: -- LOWER_THRESH is 0.440 373: -- UPPER_THRESH is 0.445 373: -- PARSED VALUE=|Jacobian: MINJAC 0.443734 MAXJAC 1.03502| 373: -- PARSED_VALUE=|0.443734| 373: Not an error 489/571 Test #373: plm-bsp-regularize-numeric-check ...... Passed 0.02 sec test 377 Start 377: plm-bsp-landmark-b-check 377: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 377: Test timeout computed to be: 1500 377: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt 377: -- REGEX is AVE *([-0-9.]*) 377: -- LOWER_THRESH is -991.5 377: -- UPPER_THRESH is -991.0 377: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 377: -- PARSED_VALUE=|-991.355164| 377: Not an error 490/571 Test #377: plm-bsp-landmark-b-check .............. Passed 0.01 sec test 380 Start 380: plm-bsp-landmark-c-check 380: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 380: Test timeout computed to be: 1500 380: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt 380: -- REGEX is AVE *([-0-9.]*) 380: -- LOWER_THRESH is -991.5 380: -- UPPER_THRESH is -991.0 380: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 380: -- PARSED_VALUE=|-991.355164| 380: Not an error 374: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 374: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt 374: EXPECTED_ERRNO is 491/571 Test #380: plm-bsp-landmark-c-check .............. Passed 0.01 sec test 383 Start 383: plm-bsp-landmark-d-check 383: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 383: Test timeout computed to be: 1500 383: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt 383: -- REGEX is AVE *([-0-9.]*) 383: -- LOWER_THRESH is -991.5 383: -- UPPER_THRESH is -991.0 383: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 383: -- PARSED_VALUE=|-991.355164| 383: Not an error 492/571 Test #383: plm-bsp-landmark-d-check .............. Passed 0.01 sec test 386 Start 386: plm-bsp-landmark-e-check 386: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 386: Test timeout computed to be: 1500 386: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt 386: -- REGEX is AVE *([-0-9.]*) 386: -- LOWER_THRESH is -991.5 386: -- UPPER_THRESH is -991.0 386: -- PARSED VALUE=|MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 386: -- PARSED_VALUE=|-991.396057| 386: Not an error 493/571 Test #386: plm-bsp-landmark-e-check .............. Passed 0.03 sec test 389 Start 389: plm-bsp-dcos-a-check 389: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/<>/Testing/PlmCheckInterval.cmake" 389: Test timeout computed to be: 1500 389: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt 389: -- REGEX is AVE *([-0-9.]*) 389: -- LOWER_THRESH is -816 389: -- UPPER_THRESH is -815 389: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 389: -- PARSED_VALUE=|-815.591492| 389: Not an error 494/571 Test #389: plm-bsp-dcos-a-check .................. Passed 0.01 sec test 392 Start 392: plm-bsp-dcos-b-check 392: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/<>/Testing/PlmCheckInterval.cmake" 392: Test timeout computed to be: 1500 392: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt 392: -- REGEX is AVE *([-0-9.]*) 392: -- LOWER_THRESH is -796.8 392: -- UPPER_THRESH is -795.8 392: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| 392: -- PARSED_VALUE=|-796.376221| 392: Not an error 495/571 Test #392: plm-bsp-dcos-b-check .................. Passed 0.01 sec test 395 Start 395: plm-bsp-dcos-c-check 395: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/<>/Testing/PlmCheckInterval.cmake" 395: Test timeout computed to be: 1500 395: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt 395: -- REGEX is AVE *([-0-9.]*) 395: -- LOWER_THRESH is -816 395: -- UPPER_THRESH is -815 395: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 395: -- PARSED_VALUE=|-815.591492| 395: Not an error 496/571 Test #395: plm-bsp-dcos-c-check .................. Passed 0.01 sec test 398 Start 398: plm-bsp-dcos-d-check 398: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/<>/Testing/PlmCheckInterval.cmake" 398: Test timeout computed to be: 1500 398: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt 398: -- REGEX is AVE *([-0-9.]*) 398: -- LOWER_THRESH is -796.8 398: -- UPPER_THRESH is -795.8 398: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| 398: -- PARSED_VALUE=|-796.376221| 398: Not an error 497/571 Test #398: plm-bsp-dcos-d-check .................. Passed 0.01 sec test 401 Start 401: plm-bsp-dcos-e-check 401: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/<>/Testing/PlmCheckInterval.cmake" 401: Test timeout computed to be: 1500 401: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt 401: -- REGEX is AVE *([-0-9.]*) 401: -- LOWER_THRESH is -816 401: -- UPPER_THRESH is -815 401: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 401: -- PARSED_VALUE=|-815.591492| 401: Not an error 498/571 Test #401: plm-bsp-dcos-e-check .................. Passed 0.01 sec test 404 Start 404: plm-bsp-dcos-f-check 404: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/<>/Testing/PlmCheckInterval.cmake" 404: Test timeout computed to be: 1500 404: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt 404: -- REGEX is AVE *([-0-9.]*) 404: -- LOWER_THRESH is -796.8 404: -- UPPER_THRESH is -795.8 404: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| 404: -- PARSED_VALUE=|-796.376221| 404: Not an error 360: RETVAL: 0 360: STDOUT: Loading fixed image [0]: gauss-1.mha 360: Loading moving image [0]: gauss-2.mha 360: Launching registration worker thread 360: Inside registration worker thread 360: Doing registration stage 360: [1] xf_in->m_type = 0, xf_out->m_type = 0 360: RESAMPLE 1 1: (2 2 2), (2 2 2) 360: RESAMPLE 1 1: (2 2 2), (2 2 2) 360: volume_calc_grad complete. 360: bspline_xform_initialize 360: rdims = (2,2,2) 360: vox_per_rgn = (11,11,11) 360: cdims = (5 5 5) 360: Algorithm flavor = h 360: Threading = 0 360: >> Checking JH allocation 360: BSPLINE PARMS 360: max_its = 5 360: max_feval = 5 360: BSPLINE XFORM HEADER 360: vox_per_rgn = 11 11 11 360: roi_offset = 0 0 0 360: roi_dim = 19 19 19 360: img_dc = 1 0 0 0 1 0 0 0 1 360: BST METRICS 360: MET 110100 MSE 1.000000 360: Setting nmax, mmax = 375 21 360: >>> START 360: This problem is unconstrained. 360: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.001 s ] 360: CMIN 0.00 CAVG 0.00 CMAX 0.00 360: LSD 0.00 360: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.001 s ] 360: CMIN -0.07 CAVG 0.01 CMAX 0.68 360: LSD 1.00 360: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.001 s ] 360: CMIN -0.35 CAVG 0.05 CMAX 3.40 360: LSD 5.00 360: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.010 s ] 360: CMIN -1.48 CAVG 0.20 CMAX 14.26 360: LSD 21.00 360: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.001 s ] 360: CMIN -1.74 CAVG 0.44 CMAX 32.50 360: LSD 27.95 360: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.001 s ] 360: CMIN -1.73 CAVG 0.34 CMAX 23.99 360: LSD 13.11 360: [2] xf_out->m_type = 9, xf_in->m_type = 0 360: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 360: bspline_xform_initialize 360: rdims = (2,2,2) 360: vox_per_rgn = (22,22,22) 360: cdims = (5 5 5) 360: ** Registration worker thread finished. 360: Writing transformation ... 360: Load: 0.037991 360: Run: 0.0243981 360: Save: 0.00175595 360: Total: 0.0641451 360: Finished! 360: 360: STDERR: 360: Not an error 499/571 Test #360: plm-bsp-itk-output .................... Passed 0.18 sec test 407 Start 407: plm-reg-multi-a-check 407: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-22" "-DUPPER_THRESH=-18" "-P" "/<>/Testing/PlmCheckInterval.cmake" 407: Test timeout computed to be: 1500 500/571 Test #404: plm-bsp-dcos-f-check .................. Passed 0.01 sec test 410 Start 410: plm-reg-multi-b-check 410: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-987" "-DUPPER_THRESH=-984" "-P" "/<>/Testing/PlmCheckInterval.cmake" 410: Test timeout computed to be: 1500 407: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt 410: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt 410: -- REGEX is AVE *([-0-9.]*) 410: -- LOWER_THRESH is -987 410: -- UPPER_THRESH is -984 410: -- PARSED VALUE=|MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872| 410: -- PARSED_VALUE=|-985.762146| 410: Not an error 407: -- REGEX is Mean: *([-0-9.]*) 501/571 Test #410: plm-reg-multi-b-check ................. Passed 0.01 sec test 413 Start 413: plm-reg-dv-itk-translation-check 413: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-467.1" "-DUPPER_THRESH=-366.9" "-P" "/<>/Testing/PlmCheckInterval.cmake" 413: Test timeout computed to be: 1500 407: -- LOWER_THRESH is -22 407: -- UPPER_THRESH is -18 407: -- PARSED VALUE=|Mean: -20.000 -0.000 -0.000| 407: -- PARSED_VALUE=|-20.000| 407: Not an error 502/571 Test #407: plm-reg-multi-a-check ................. Passed 0.01 sec test 414 Start 414: plm-reg-roi-a 414: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 414: Test timeout computed to be: 1500 413: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt 413: -- REGEX is AVE *([-0-9.]*) 413: -- LOWER_THRESH is -467.1 413: -- UPPER_THRESH is -366.9 413: -- PARSED VALUE=|MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872| 413: -- PARSED_VALUE=|-467.031616| 413: Not an error 503/571 Test #413: plm-reg-dv-itk-translation-check ...... Passed 0.02 sec test 415 Start 415: plm-reg-roi-b 415: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 415: Test timeout computed to be: 1500 374: RETVAL: 0 374: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 374: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 374: Loading fixed landmarks: /<>/Testing/Data/fiducials-rect-2.fcsv 374: Loading moving landmarks: /<>/Testing/Data/fiducials-rect-3.fcsv 374: Launching registration worker thread 374: Inside registration worker thread 374: Doing registration stage 374: [1] xf_in->m_type = 0, xf_out->m_type = 0 374: RESAMPLE 1 1: (2 2 2), (2 2 2) 374: RESAMPLE 1 1: (2 2 2), (2 2 2) 374: volume_calc_grad complete. 374: bspline_xform_initialize 374: Warning: vox_per_rgn was less than 4. 374: Warning: vox_per_rgn was less than 4. 374: Warning: vox_per_rgn was less than 4. 374: rdims = (5,5,5) 374: vox_per_rgn = (4,4,4) 374: cdims = (8 8 8) 374: Algorithm flavor = h 374: Threading = 0 374: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 374: >> Checking JH allocation 374: Computing landmark grid coordinates 374: image dc=1 0 0 0 1 0 0 0 1 374: image or=-236.842 -236.842 -236.842 374: image dm=19 19 19 374: [0], (-26.2717 -52.1629 46.0528) -> (8.001675 7.017809 10.750006) 374: [1], (65.8702 -52.5436 46.053) -> (11.503067 7.003343 10.750014) 374: [2], (65.8702 52.5439 46.053) -> (11.503067 10.996667 10.750014) 374: [3], (-25.5102 53.6862 46.053) -> (8.030612 11.040074 10.750014) 374: [4], (-25.891 -52.1629 -46.0525) -> (8.016141 7.017809 7.250004) 374: [5], (66.6317 -53.3051 -46.053) -> (11.532004 6.974406 7.249985) 374: [6], (65.8702 53.3054 -46.053) -> (11.503067 11.025604 7.249985) 374: [7], (-25.1295 53.6862 -46.053) -> (8.045078 11.040074 7.249985) 374: BSPLINE PARMS 374: max_its = 5 374: max_feval = 5 374: BSPLINE XFORM HEADER 374: vox_per_rgn = 4 4 4 374: roi_offset = 0 0 0 374: roi_dim = 19 19 19 374: img_dc = 1 0 0 0 1 0 0 0 1 374: BST METRICS 374: MET 110100 MSE 1.000000 374: Setting nmax, mmax = 1536 41 374: >>> START 374: This problem is unconstrained. 374: [ 0, 0] SCORE 3407.677 NV 6859 GM 84.848 GN 25 [ 0.002 s ] 374: MSE 2961.435 LM 446.242 374: CMIN 0.00 CAVG 0.00 CMAX 0.00 374: LSD 0.00 374: [ 0, 1] SCORE 3361.326 NV 6859 GM 83.763 GN 24.7 [ 0.001 s ] 374: MSE 2923.708 LM 437.617 374: CMIN -0.50 CAVG -0.00 CMAX 0.07 374: LSD 1.00 374: [ 0, 2] SCORE 3181.879 NV 6859 GM 79.422 GN 23.5 [ 0.001 s ] 374: MSE 2777.757 LM 404.122 374: CMIN -2.48 CAVG -0.01 CMAX 0.34 374: LSD 5.00 374: [ 0, 3] SCORE 2557.441 NV 6859 GM 62.038 GN 18.9 [ 0.002 s ] 374: MSE 2271.265 LM 286.176 374: CMIN -10.41 CAVG -0.05 CMAX 1.44 374: LSD 21.00 374: [ 1, 4] SCORE 1117.771 NV 6859 GM -1.799 GN 6.83 [ 0.001 s ] 374: MSE 1009.222 LM 108.548 374: CMIN -45.97 CAVG -0.19 CMAX 12.05 374: LSD 76.81 374: [ 2, 5] SCORE 848.407 NV 6859 GM -12.697 GN 4.53 [ 0.001 s ] 374: MSE 667.771 LM 180.635 374: CMIN -54.81 CAVG -0.22 CMAX 17.65 374: LSD 34.30 374: [2] xf_out->m_type = 9, xf_in->m_type = 0 374: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 374: bspline_xform_initialize 374: rdims = (5,5,5) 374: vox_per_rgn = (8,8,8) 374: cdims = (8 8 8) 374: Writing transformation ... 374: Warping... 374: Running: plm_warp_native 374: Converting input image... 374: Converting xform... 374: bspline_xform_initialize 374: rdims = (5,5,5) 374: vox_per_rgn = (8,8,8) 374: cdims = (8 8 8) 374: Creating output vf... 374: Creating output volume... 374: Running native warper... 374: ** Registration worker thread finished. 374: bspline_warp complete. 374: Back convert to original type... 374: > Convert vf to itk 374: > Conversion complete. 374: plm_warp_native is complete. 374: Saving image... 374: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-img.mha 374: Saving warped landmarks... 374: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-warped.fcsv 374: Saving vf... 374: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-vf.mha 374: Load: 0.043133 374: Run: 0.0119112 374: Save: 0.0137689 374: Total: 0.0688131 374: Finished! 374: 374: STDERR: 374: Not an error 504/571 Test #374: plm-bsp-landmark-a .................... Passed 0.13 sec test 416 Start 416: plm-reg-roi-c 416: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 416: Test timeout computed to be: 1500 415: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 415: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt 415: EXPECTED_ERRNO is 414: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 414: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt 414: EXPECTED_ERRNO is 416: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 416: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt 416: EXPECTED_ERRNO is 415: RETVAL: 0 415: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 415: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 415: Loading fixed roi [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 415: Loading moving roi [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 415: Launching registration worker thread 415: Inside registration worker thread 415: Doing registration stage 415: [1] xf_in->m_type = 0, xf_out->m_type = 0 415: [2] xf_out->m_type = 1, xf_in->m_type = 0 415: Doing registration stage 415: [1] xf_in->m_type = 1, xf_out->m_type = 0 415: Fixed image for this stage: 415: Dim = 15 25 15 415: Origin = -14 -24 -14 415: Spacing = 2 2 2 415: Direction Cosines = 415: 1 0 0 415: 0 1 0 415: 0 0 1 415: Moving image for this stage: 415: Dim = 15 25 15 415: Origin = -14 -24 -14 415: Spacing = 2 2 2 415: Direction Cosines = 415: 1 0 0 415: 0 1 0 415: 0 0 1 415: Initial Parameters = [0, 0, 0] 415: Starting ITK registration 415: StartEvent: [0, 0, 0] 415: EndEvent: [0, 0, 0] 415: RegularStepGradientDescentOptimizer: Gradient magnitude tolerance met after 0 iterations. Gradient magnitude (0) is less than gradient magnitude tolerance (0.0001). 415: ITK registration complete 415: [2] xf_out->m_type = 1, xf_in->m_type = 1 415: ** Registration worker thread finished. 415: Writing transformation ... 415: Warping... 415: plm_warp_itk: xform_to_itk_vf 415: plm_warp_itk: convert_to_itk 415: plm_warp_itk: warping... 415: Saving image... 415: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-img.mha 415: Saving vf... 415: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-vf.mha 415: Load: 0.0207958 415: Run: 0.00783014 415: Save: 0.00416398 415: Total: 0.0327899 415: Finished! 415: 415: STDERR: 415: Not an error 505/571 Test #415: plm-reg-roi-b ......................... Passed 0.09 sec test 417 Start 417: plm-reg-roi-d 417: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-d" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 417: Test timeout computed to be: 1500 417: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 417: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt 417: EXPECTED_ERRNO is 416: RETVAL: 0 416: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 416: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 416: Loading fixed roi [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 416: Launching registration worker thread 416: Inside registration worker thread 416: Doing registration stage 416: [1] xf_in->m_type = 0, xf_out->m_type = 0 416: RESAMPLE 1 1: (2 2 2), (2 2 2) 416: RESAMPLE 1 1: (2 2 2), (2 2 2) 416: volume_calc_grad complete. 416: bspline_xform_initialize 416: rdims = (3,5,3) 416: vox_per_rgn = (5,5,5) 416: cdims = (6 8 6) 416: Algorithm flavor = g 416: Threading = 0 416: Regularization: flavor = c lambda = 0.100000 416: Regularizer initialized 416: >> Checking JH allocation 416: BSPLINE PARMS 416: max_its = 10 416: max_feval = 10 416: BSPLINE XFORM HEADER 416: vox_per_rgn = 5 5 5 416: roi_offset = 0 0 0 416: roi_dim = 15 25 15 416: img_dc = 1 0 0 0 1 0 0 0 1 416: BST METRICS 416: MET 110110 MSE 1.000000 416: Setting nmax, mmax = 864 31 416: >>> START 416: This problem is unconstrained. 416: [ 0, 0] SCORE 0.0000000 NV 1690 GM 0.000 GN 0 [ 0.053 s ] 416: MSE 0.0000000 RM 0.000 [ 0.028 | 0.024 ] 416: CMIN 0.00 CAVG 0.00 CMAX 0.00 416: LSD 0.00 416: * * * 416: 416: Tit = total number of iterations 416: Tnf = total number of function evaluations 416: Tnint = total number of segments explored during Cauchy searches 416: Skip = number of BFGS updates skipped 416: Nact = number of active bounds at final generalized Cauchy point 416: Projg = norm of the final projected gradient 416: F = final function value 416: 416: * * * 416: N Tit Tnf Tnint Skip Nact Projg F 416: 864 0 1 0 0 0 0 0 416: CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL 416: Total User time 0 seconds. 416: [2] xf_out->m_type = 9, xf_in->m_type = 0 416: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 416: bspline_xform_initialize 416: rdims = (3,5,3) 416: vox_per_rgn = (10,10,10) 416: cdims = (6 8 6) 416: ** Registration worker thread finished. 416: Writing transformation ... 416: Warping... 416: Running: plm_warp_native 416: Converting input image... 416: Converting xform... 416: bspline_xform_initialize 416: rdims = (3,5,3) 416: vox_per_rgn = (10,10,10) 416: cdims = (6 8 6) 416: Creating output vf... 416: Creating output volume... 416: Running native warper... 416: bspline_warp complete. 416: Back convert to original type... 416: > Convert vf to itk 416: > Conversion complete. 416: plm_warp_native is complete. 416: Saving image... 416: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-img.mha 416: Saving vf... 416: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-vf.mha 416: Load: 0.0194271 416: Run: 0.056766 416: Save: 0.0521631 416: Total: 0.128356 416: Finished! 416: 416: STDERR: 416: Not an error 506/571 Test #416: plm-reg-roi-c ......................... Passed 0.19 sec test 418 Start 418: plm-reg-roi-e 418: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 418: Test timeout computed to be: 1500 418: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 418: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt 418: EXPECTED_ERRNO is 414: RETVAL: 0 414: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-10.mha 414: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-11.mha 414: Loading fixed roi [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha 414: Loading moving roi [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 414: Launching registration worker thread 414: Inside registration worker thread 414: Doing registration stage 414: [1] xf_in->m_type = 0, xf_out->m_type = 0 414: RESAMPLE 1 1: (1 1 1), (1 1 1) 414: RESAMPLE 1 1: (1 1 1), (1 1 1) 414: volume_calc_grad complete. 414: bspline_xform_initialize 414: Warning: vox_per_rgn was less than 4. 414: Warning: vox_per_rgn was less than 4. 414: Warning: vox_per_rgn was less than 4. 414: rdims = (10,10,10) 414: vox_per_rgn = (4,4,4) 414: cdims = (13 13 13) 414: Algorithm flavor = h 414: Threading = 0 414: >> Checking JH allocation 414: >> Performing JH allocation 414: BSPLINE PARMS 414: max_its = 5 414: max_feval = 5 414: BSPLINE XFORM HEADER 414: vox_per_rgn = 4 4 4 414: roi_offset = 0 0 0 414: roi_dim = 38 38 38 414: img_dc = 1 0 0 0 1 0 0 0 1 414: BST METRICS 414: MET 110111 MI 1.000000 414: >> Performing JH initialization 414: Setting nmax, mmax = 6591 83 414: >>> START 414: This problem is unconstrained. 414: [ 0, 0] MI -0.0060547 NV 729 GM 0.008 GN 0.0011 [ 0.059 s ] 414: CMIN 0.01 CAVG 0.01 CMAX 0.01 414: LSD 0.00 414: [ 0, 1] MI -0.0496013 NV 569 GM -0.020 GN 0.00349 [ 0.068 s ] 414: CMIN -0.30 CAVG 0.01 CMAX 0.04 414: LSD 1.00 414: [ 1, 2] MI -0.0061482 NV 729 GM 0.000 GN 0.00024 [ 0.035 s ] 414: CMIN -0.30 CAVG 0.01 CMAX 0.05 414: LSD 0.25 414: [ 1, 3] MI -0.0496042 NV 569 GM -0.020 GN 0.00349 [ 0.040 s ] 414: CMIN -0.30 CAVG 0.01 CMAX 0.04 414: LSD 0.00 414: [ 1, 4] MI -0.0496071 NV 569 GM -0.020 GN 0.00349 [ 0.067 s ] 414: CMIN -0.30 CAVG 0.01 CMAX 0.04 414: LSD 0.00 414: [ 1, 5] MI -0.0020808 NV 629 GM -0.002 GN 0.000318 [ 0.056 s ] 414: CMIN -0.30 CAVG 0.01 CMAX 0.05 414: LSD 0.12 414: [2] xf_out->m_type = 9, xf_in->m_type = 0 414: Writing transformation ... 414: Warping... 414: Running: plm_warp_native 414: Converting input image... 414: Converting xform... 414: bspline_xform_initialize 414: rdims = (10,10,10) 414: vox_per_rgn = (4,4,4) 414: cdims = (13 13 13) 414: ** Registration worker thread finished. 414: Creating output vf... 414: Creating output volume... 414: Running native warper... 414: bspline_warp complete. 414: Back convert to original type... 414: > Convert vf to itk 414: > Conversion complete. 414: plm_warp_native is complete. 414: Saving image... 414: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-img.mha 414: Saving vf... 414: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-vf.mha 414: Load: 0.020643 414: Run: 0.33563 414: Save: 0.0212541 414: Total: 0.377527 414: Finished! 414: 414: STDERR: 414: Not an error 507/571 Test #414: plm-reg-roi-a ......................... Passed 0.45 sec test 419 Start 419: plm-reg-stiffness-a 419: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-stiffness-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=register;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 419: Test timeout computed to be: 1500 419: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 419: PARMS is register;/<>/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt 419: EXPECTED_ERRNO is 417: RETVAL: 0 417: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 417: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 417: Loading fixed roi [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha 417: Launching registration worker thread 417: Inside registration worker thread 417: Doing registration stage 417: [1] xf_in->m_type = 0, xf_out->m_type = 0 417: RESAMPLE 1 1: (2 2 2), (2 2 2) 417: RESAMPLE 1 1: (2 2 2), (2 2 2) 417: volume_calc_grad complete. 417: bspline_xform_initialize 417: rdims = (3,5,3) 417: vox_per_rgn = (5,5,5) 417: cdims = (6 8 6) 417: Algorithm flavor = g 417: Threading = 0 417: Regularization: flavor = c lambda = 0.100000 417: Regularizer initialized 417: >> Checking JH allocation 417: BSPLINE PARMS 417: max_its = 10 417: max_feval = 10 417: BSPLINE XFORM HEADER 417: vox_per_rgn = 5 5 5 417: roi_offset = 0 0 0 417: roi_dim = 15 25 15 417: img_dc = 1 0 0 0 1 0 0 0 1 417: BST METRICS 417: MET 110110 MSE 1.000000 417: Setting nmax, mmax = 864 31 417: >>> START 417: This problem is unconstrained. 417: [ 0, 0] SCORE 66568.047 NV 1690 GM 14792.900 GN 3.94e+03 [ 0.052 s ] 417: MSE 66568.047 RM 0.000 [ 0.031 | 0.021 ] 417: CMIN 0.00 CAVG 0.00 CMAX 0.00 417: LSD 0.00 417: [ 0, 1] SCORE 60779.625 NV 1690 GM 13427.228 GN 3.59e+03 [ 0.079 s ] 417: MSE 60779.609 RM 0.015 [ 0.039 | 0.040 ] 417: CMIN -0.46 CAVG -0.00 CMAX 0.10 417: LSD 1.00 417: [ 0, 2] SCORE 43202.340 NV 1690 GM 16992.866 GN 4.39e+03 [ 0.042 s ] 417: MSE 43201.965 RM 0.376 [ 0.028 | 0.014 ] 417: CMIN -2.30 CAVG -0.02 CMAX 0.50 417: LSD 5.00 417: [ 0, 3] SCORE 11325.080 NV 1619 GM -932.100 GN 1.45e+03 [ 0.062 s ] 417: MSE 11318.452 RM 6.628 [ 0.036 | 0.026 ] 417: CMIN -9.66 CAVG -0.09 CMAX 2.11 417: LSD 21.00 417: [ 1, 4] SCORE 5165.491 NV 1647 GM 1195.560 GN 605 [ 0.050 s ] 417: MSE 5160.030 RM 5.461 [ 0.024 | 0.026 ] 417: CMIN -7.99 CAVG -0.09 CMAX 1.46 417: LSD 4.95 417: [ 2, 5] SCORE 5370.420 NV 1649 GM -3582.381 GN 910 [ 0.070 s ] 417: MSE 5363.509 RM 6.911 [ 0.022 | 0.047 ] 417: CMIN -8.90 CAVG -0.10 CMAX 1.42 417: LSD 5.04 417: [ 2, 6] SCORE 4305.869 NV 1649 GM -1305.969 GN 395 [ 0.050 s ] 417: MSE 4299.880 RM 5.989 [ 0.033 | 0.018 ] 417: CMIN -7.75 CAVG -0.10 CMAX 1.44 417: LSD 2.37 417: [ 3, 7] SCORE 4280.987 NV 1653 GM 1734.354 GN 474 [ 0.046 s ] 417: MSE 4275.453 RM 5.534 [ 0.022 | 0.024 ] 417: CMIN -7.64 CAVG -0.09 CMAX 1.40 417: LSD 1.62 417: [ 4, 8] SCORE 4194.305 NV 1651 GM 205.505 GN 129 [ 0.050 s ] 417: MSE 4188.512 RM 5.794 [ 0.024 | 0.026 ] 417: CMIN -7.74 CAVG -0.10 CMAX 1.43 417: LSD 0.60 417: [ 5, 9] SCORE 4196.242 NV 1645 GM 115.154 GN 112 [ 0.062 s ] 417: MSE 4190.442 RM 5.800 [ 0.010 | 0.052 ] 417: CMIN -7.66 CAVG -0.10 CMAX 1.43 417: LSD 0.26 417: [ 5, 10] SCORE 4195.648 NV 1649 GM 201.989 GN 124 [ 0.048 s ] 417: MSE 4189.854 RM 5.795 [ 0.024 | 0.024 ] 417: CMIN -7.72 CAVG -0.10 CMAX 1.43 417: LSD 0.06 417: [2] xf_out->m_type = 9, xf_in->m_type = 0 417: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 417: bspline_xform_initialize 417: rdims = (3,5,3) 417: vox_per_rgn = (10,10,10) 417: cdims = (6 8 6) 417: ** Registration worker thread finished. 417: Writing transformation ... 417: Warping... 417: Running: plm_warp_native 417: Converting input image... 417: Converting xform... 417: bspline_xform_initialize 417: rdims = (3,5,3) 417: vox_per_rgn = (10,10,10) 417: cdims = (6 8 6) 417: Creating output vf... 417: Creating output volume... 417: Running native warper... 417: bspline_warp complete. 417: Back convert to original type... 417: > Convert vf to itk 417: > Conversion complete. 417: plm_warp_native is complete. 417: Saving image... 417: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-img.mha 417: Saving vf... 417: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-vf.mha 417: Load: 0.0252571 417: Run: 0.649068 417: Save: 0.06493 417: Total: 0.739255 417: Finished! 417: 417: STDERR: 417: Not an error 508/571 Test #417: plm-reg-roi-d ......................... Passed 0.86 sec test 422 Start 422: plm-reg-process-a-check 422: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-491.0" "-DUPPER_THRESH=-490.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 422: Test timeout computed to be: 1500 422: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt 422: -- REGEX is AVE *([-0-9.]*) 422: -- LOWER_THRESH is -491.0 422: -- UPPER_THRESH is -490.0 422: -- PARSED VALUE=|MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872| 422: -- PARSED_VALUE=|-490.647552| 422: Not an error 509/571 Test #422: plm-reg-process-a-check ............... Passed 0.02 sec test 425 Start 425: plm-reg-trans-a-check 425: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/<>/Testing/PlmCheckInterval.cmake" 425: Test timeout computed to be: 1500 425: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt 425: -- REGEX is AVE *([-0-9.]*) 425: -- LOWER_THRESH is -661.75 425: -- UPPER_THRESH is -661.65 425: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| 425: -- PARSED_VALUE=|-661.690491| 425: Not an error 510/571 Test #425: plm-reg-trans-a-check ................. Passed 0.02 sec test 428 Start 428: plm-reg-trans-b-check 428: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/<>/Testing/PlmCheckInterval.cmake" 428: Test timeout computed to be: 1500 428: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt 428: -- REGEX is AVE *([-0-9.]*) 428: -- LOWER_THRESH is -661.75 428: -- UPPER_THRESH is -661.65 428: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| 428: -- PARSED_VALUE=|-661.690491| 428: Not an error 511/571 Test #428: plm-reg-trans-b-check ................. Passed 0.03 sec test 431 Start 431: plm-reg-trans-mi-a-check 431: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-612.75" "-DUPPER_THRESH=-612.60" "-P" "/<>/Testing/PlmCheckInterval.cmake" 431: Test timeout computed to be: 1500 431: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt 431: -- REGEX is AVE *([-0-9.]*) 431: -- LOWER_THRESH is -612.75 431: -- UPPER_THRESH is -612.60 431: -- PARSED VALUE=|MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872| 431: -- PARSED_VALUE=|-612.681030| 431: Not an error 512/571 Test #431: plm-reg-trans-mi-a-check .............. Passed 0.02 sec test 434 Start 434: plm-reg-autores-a-check 434: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.6" "-DUPPER_THRESH=-597.5" "-P" "/<>/Testing/PlmCheckInterval.cmake" 434: Test timeout computed to be: 1500 434: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt 434: -- REGEX is AVE *([-0-9.]*) 434: -- LOWER_THRESH is -597.6 434: -- UPPER_THRESH is -597.5 434: -- PARSED VALUE=|MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872| 434: -- PARSED_VALUE=|-597.535889| 434: Not an error 513/571 Test #434: plm-reg-autores-a-check ............... Passed 0.02 sec test 437 Start 437: plm-reg-autores-b-check 437: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.5" "-DUPPER_THRESH=-597.4" "-P" "/<>/Testing/PlmCheckInterval.cmake" 437: Test timeout computed to be: 1500 437: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt 437: -- REGEX is AVE *([-0-9.]*) 437: -- LOWER_THRESH is -597.5 437: -- UPPER_THRESH is -597.4 437: -- PARSED VALUE=|MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872| 437: -- PARSED_VALUE=|-597.450806| 437: Not an error 514/571 Test #437: plm-reg-autores-b-check ............... Passed 0.02 sec test 438 Start 438: plm-reg-point-dmap-a 438: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-point-dmap-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=/<>/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 438: Test timeout computed to be: 1500 438: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 438: PARMS is /<>/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt 438: EXPECTED_ERRNO is 419: RETVAL: 0 419: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-19.mha 419: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-4.mha 419: Loading fixed stiffness: /<>/obj-x86_64-linux-gnu/Testing/roi-1.mha 419: Launching registration worker thread 419: Inside registration worker thread 419: Doing registration stage 419: [1] xf_in->m_type = 0, xf_out->m_type = 0 419: RESAMPLE 1 1: (2 2 2), (2 2 2) 419: RESAMPLE 1 1: (2 2 2), (2 2 2) 419: volume_calc_grad complete. 419: bspline_xform_initialize 419: Warning: vox_per_rgn was less than 4. 419: Warning: vox_per_rgn was less than 4. 419: Warning: vox_per_rgn was less than 4. 419: rdims = (5,5,5) 419: vox_per_rgn = (4,4,4) 419: cdims = (8 8 8) 419: RESAMPLE 1 1: (2 2 2), (2 2 2) 419: Algorithm flavor = g 419: Threading = 0 419: Regularization: flavor = a lambda = 0.100000 419: >> Checking JH allocation 419: BSPLINE PARMS 419: max_its = 5 419: max_feval = 5 419: BSPLINE XFORM HEADER 419: vox_per_rgn = 4 4 4 419: roi_offset = 0 0 0 419: roi_dim = 19 19 19 419: img_dc = 1 0 0 0 1 0 0 0 1 419: BST METRICS 419: MET 110100 MSE 1.000000 419: Setting nmax, mmax = 1536 41 419: >>> START 419: This problem is unconstrained. 419: [ 0, 0] SCORE 74227.273 NV 6859 GM 0.000 GN 188 [ 0.097 s ] 419: MSE 74227.273 RM 0.000 [ 0.035 | 0.062 ] 419: CMIN 0.00 CAVG 0.00 CMAX 0.00 419: LSD 0.00 419: [ 0, 1] SCORE 73948.398 NV 6859 GM 0.045 GN 187 [ 0.067 s ] 419: MSE 73948.391 RM 0.010 [ 0.012 | 0.055 ] 419: CMIN -0.14 CAVG -0.00 CMAX 0.15 419: LSD 1.00 419: [ 0, 2] SCORE 72846.922 NV 6859 GM 0.264 GN 183 [ 0.061 s ] 419: MSE 72846.680 RM 0.242 [ 0.010 | 0.051 ] 419: CMIN -0.69 CAVG -0.00 CMAX 0.76 419: LSD 5.00 419: [ 0, 3] SCORE 68660.922 NV 6859 GM 1.168 GN 166 [ 0.078 s ] 419: MSE 68656.656 RM 4.268 [ 0.023 | 0.055 ] 419: CMIN -2.91 CAVG -0.00 CMAX 3.18 419: LSD 21.00 419: [ 1, 4] SCORE 42095.320 NV 6859 GM -11.876 GN 58.8 [ 0.069 s ] 419: MSE 41780.070 RM 315.248 [ 0.020 | 0.049 ] 419: CMIN -25.44 CAVG -0.01 CMAX 25.37 419: LSD 160.09 419: [ 2, 5] SCORE 33075.488 NV 6859 GM 41.190 GN 77.9 [ 0.070 s ] 419: MSE 32300.393 RM 775.097 [ 0.023 | 0.047 ] 419: CMIN -39.12 CAVG 0.00 CMAX 38.06 419: LSD 114.34 419: [2] xf_out->m_type = 9, xf_in->m_type = 0 419: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 419: bspline_xform_initialize 419: rdims = (5,5,5) 419: vox_per_rgn = (8,8,8) 419: cdims = (8 8 8) 419: ** Registration worker thread finished. 419: Writing transformation ... 419: Warping... 419: Running: plm_warp_native 419: Converting input image... 419: Converting xform... 419: bspline_xform_initialize 419: rdims = (5,5,5) 419: vox_per_rgn = (8,8,8) 419: cdims = (8 8 8) 419: Creating output vf... 419: Creating output volume... 419: Running native warper... 419: bspline_warp complete. 419: Back convert to original type... 419: > Convert vf to itk 419: > Conversion complete. 419: plm_warp_native is complete. 419: Saving image... 419: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-img.mha 419: Saving vf... 419: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-vf.mha 419: Load: 0.070291 419: Run: 0.47256 419: Save: 0.042273 419: Total: 0.585124 419: Finished! 419: 419: STDERR: 419: Not an error 515/571 Test #419: plm-reg-stiffness-a ................... Passed 0.76 sec test 441 Start 441: plm-compose-a-warp 441: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-warp" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 441: Test timeout computed to be: 1500 441: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 441: PARMS is warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha 441: EXPECTED_ERRNO is 418: RETVAL: 0 418: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 418: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 418: Launching registration worker thread 418: Inside registration worker thread 418: Doing registration stage 418: [1] xf_in->m_type = 0, xf_out->m_type = 0 418: Fixed image for this stage: 418: Dim = 15 25 15 418: Origin = -14 -24 -14 418: Spacing = 2 2 2 418: Direction Cosines = 418: 1 0 0 418: 0 1 0 418: 0 0 1 418: Moving image for this stage: 418: Dim = 15 25 15 418: Origin = -14 -24 -14 418: Spacing = 2 2 2 418: Direction Cosines = 418: 1 0 0 418: 0 1 0 418: 0 0 1 418: Initial Parameters = [0, 0, 0] 418: Starting ITK registration 418: StartEvent: [0, 0, 0] 418: MSE [ 0, 0, 1.00] 20000.000 [0, 0, 0] * 418: MSE [ 1, 1, 1.00] 16666.407 [-0.9999999727511648, 0.00023344735891123153, 0] -3333.59 * 418: MSE [ 2, 2, 1.00] 21428.450 [-1.9999999583532024, 0.00006375373999520714, 0] 4762.04 418: MSE [ 3, 3, 0.50] 17856.955 [-2.999999953945063, 0.00015764878267380048, 0] -3571.49 418: MSE [ 4, 4, 0.50] 18749.999 [-2.499999978937018, -4.3965600459995287e-7, 5.7911734313555276e-18] 893.04 418: MSE [ 5, 5, 0.25] 21428.553 [-1.999999979024236, -0.000009778710908699901, 5.7911734313555276e-18] 2678.55 418: MSE [ 6, 6, 0.12] 19865.879 [-2.249999944663833, 0.00012129455271912684, 1.0984515529250414e-16] -1562.67 418: MSE [ 7, 7, 0.06] 20591.445 [-2.1250000509246822, -0.00004169379354025279, 1.2728126980000689e-16] 725.57 418: MSE [ 8, 8, 0.03] 20214.720 [-2.187499942399231, 0.00007477796101133485, 1.6876927694097607e-16] -376.73 418: MSE [ 9, 9, 0.02] 20399.540 [-2.1562503690872257, -0.00008852487918364115, 2.7810789828646206e-16] 184.82 418: EndEvent: [-2.1562503690872257, -0.00008852487918364115, 2.7810789828646206e-16] 418: RegularStepGradientDescentOptimizer: Maximum number of iterations (10) exceeded. 418: ITK registration complete 418: [2] xf_out->m_type = 1, xf_in->m_type = 0 418: Doing registration stage 418: [1] xf_in->m_type = 1, xf_out->m_type = 0 418: RESAMPLE 1 1: (2 2 2), (2 2 2) 418: RESAMPLE 1 1: (2 2 2), (2 2 2) 418: volume_calc_grad complete. 418: bspline_xform_initialize 418: rdims = (3,5,3) 418: vox_per_rgn = (5,5,5) 418: cdims = (6 8 6) 418: Algorithm flavor = g 418: Threading = 0 418: Regularization: flavor = c lambda = 0.100000 418: Regularizer initialized 418: >> Checking JH allocation 418: BSPLINE PARMS 418: max_its = 5 418: max_feval = 5 418: BSPLINE XFORM HEADER 418: vox_per_rgn = 5 5 5 418: roi_offset = 0 0 0 418: roi_dim = 15 25 15 418: img_dc = 1 0 0 0 1 0 0 0 1 418: BST METRICS 418: MET 110100 MSE 1.000000 418: Setting nmax, mmax = 864 31 418: >>> START 418: This problem is unconstrained. 418: [ 0, 0] SCORE 17856.865 NV 5250 GM 596.305 GN 997 [ 0.084 s ] 418: MSE 17856.865 RM 0.000 [ 0.041 | 0.043 ] 418: CMIN -1.00 CAVG -0.33 CMAX 0.00 418: LSD 0.00 418: [ 0, 1] SCORE 15761.621 NV 5415 GM 4002.270 GN 1.58e+03 [ 0.051 s ] 418: MSE 15761.603 RM 0.019 [ 0.024 | 0.027 ] 418: CMIN -1.35 CAVG -0.33 CMAX 0.11 418: LSD 1.00 418: [ 0, 2] SCORE 11419.833 NV 5415 GM 3904.956 GN 1.2e+03 [ 0.047 s ] 418: MSE 11419.360 RM 0.473 [ 0.021 | 0.026 ] 418: CMIN -2.76 CAVG -0.34 CMAX 0.57 418: LSD 5.00 418: [ 0, 3] SCORE 11865.492 NV 5349 GM 4432.436 GN 1.31e+03 [ 0.044 s ] 418: MSE 11857.157 RM 8.335 [ 0.022 | 0.022 ] 418: CMIN -8.39 CAVG -0.35 CMAX 4.37 418: LSD 21.00 418: [ 1, 4] SCORE 2624.840 NV 5330 GM 1520.288 GN 405 [ 0.048 s ] 418: MSE 2620.351 RM 4.489 [ 0.022 | 0.026 ] 418: CMIN -7.51 CAVG -0.37 CMAX 1.81 418: LSD 7.90 418: [ 2, 5] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.066 s ] 418: MSE 2064.967 RM 5.786 [ 0.030 | 0.036 ] 418: CMIN -8.62 CAVG -0.39 CMAX 1.40 418: LSD 4.35 418: [2] xf_out->m_type = 9, xf_in->m_type = 1 418: Doing registration stage 418: [1] xf_in->m_type = 9, xf_out->m_type = 0 418: RESAMPLE 1 1: (2 2 2), (2 2 2) 418: RESAMPLE 1 1: (2 2 2), (2 2 2) 418: volume_calc_grad complete. 418: bspline_xform_initialize 418: rdims = (3,5,3) 418: vox_per_rgn = (5,5,5) 418: cdims = (6 8 6) 418: Algorithm flavor = g 418: Threading = 0 418: Regularization: flavor = c lambda = 0.100000 418: Regularizer initialized 418: >> Checking JH allocation 418: BSPLINE PARMS 418: max_its = 5 418: max_feval = 5 418: BSPLINE XFORM HEADER 418: vox_per_rgn = 5 5 5 418: roi_offset = 0 0 0 418: roi_dim = 15 25 15 418: img_dc = 1 0 0 0 1 0 0 0 1 418: BST METRICS 418: MET 110100 MSE 1.000000 418: Setting nmax, mmax = 864 31 418: >>> START 418: This problem is unconstrained. 418: [ 0, 0] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.071 s ] 418: MSE 2064.967 RM 5.786 [ 0.023 | 0.048 ] 418: CMIN -8.62 CAVG -0.39 CMAX 1.40 418: LSD 0.00 418: [ 0, 1] SCORE 1741.366 NV 5318 GM -709.336 GN 291 [ 0.064 s ] 418: MSE 1736.001 RM 5.365 [ 0.020 | 0.044 ] 418: CMIN -8.13 CAVG -0.39 CMAX 1.38 418: LSD 1.00 418: [ 1, 2] SCORE 1448.726 NV 5351 GM 553.138 GN 184 [ 0.064 s ] 418: MSE 1444.063 RM 4.664 [ 0.019 | 0.045 ] 418: CMIN -7.05 CAVG -0.38 CMAX 1.33 418: LSD 2.47 418: [ 2, 3] SCORE 1411.069 NV 5344 GM 258.307 GN 92.3 [ 0.044 s ] 418: MSE 1406.122 RM 4.946 [ 0.019 | 0.025 ] 418: CMIN -7.20 CAVG -0.39 CMAX 1.33 418: LSD 0.62 418: [ 3, 4] SCORE 1391.029 NV 5340 GM -132.885 GN 63.2 [ 0.064 s ] 418: MSE 1385.782 RM 5.247 [ 0.040 | 0.024 ] 418: CMIN -7.41 CAVG -0.39 CMAX 1.30 418: LSD 0.81 418: [ 4, 5] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.042 s ] 418: MSE 1375.316 RM 5.240 [ 0.016 | 0.025 ] 418: CMIN -7.42 CAVG -0.39 CMAX 1.30 418: LSD 0.36 418: [2] xf_out->m_type = 9, xf_in->m_type = 9 418: Doing registration stage 418: [1] xf_in->m_type = 9, xf_out->m_type = 0 418: RESAMPLE 1 1: (2 2 2), (2 2 2) 418: RESAMPLE 1 1: (2 2 2), (2 2 2) 418: volume_calc_grad complete. 418: bspline_xform_initialize 418: rdims = (3,5,3) 418: vox_per_rgn = (5,5,5) 418: cdims = (6 8 6) 418: Algorithm flavor = g 418: Threading = 0 418: Regularization: flavor = c lambda = 0.100000 418: Regularizer initialized 418: >> Checking JH allocation 418: BSPLINE PARMS 418: max_its = 5 418: max_feval = 5 418: BSPLINE XFORM HEADER 418: vox_per_rgn = 5 5 5 418: roi_offset = 0 0 0 418: roi_dim = 15 25 15 418: img_dc = 1 0 0 0 1 0 0 0 1 418: BST METRICS 418: MET 110100 MSE 1.000000 418: Setting nmax, mmax = 864 31 418: >>> START 418: This problem is unconstrained. 418: [ 0, 0] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.027 s ] 418: MSE 1375.316 RM 5.240 [ 0.011 | 0.016 ] 418: CMIN -7.42 CAVG -0.39 CMAX 1.30 418: LSD 0.00 418: [ 0, 1] SCORE 1360.810 NV 5336 GM 259.462 GN 115 [ 0.049 s ] 418: MSE 1355.755 RM 5.056 [ 0.020 | 0.029 ] 418: CMIN -7.23 CAVG -0.39 CMAX 1.32 418: LSD 1.00 418: [ 0, 2] SCORE 1363.081 NV 5336 GM 215.275 GN 64.4 [ 0.051 s ] 418: MSE 1357.933 RM 5.148 [ 0.023 | 0.028 ] 418: CMIN -7.33 CAVG -0.39 CMAX 1.31 418: LSD 0.47 418: [ 1, 3] SCORE 1355.968 NV 5336 GM 93.286 GN 47.5 [ 0.040 s ] 418: MSE 1350.760 RM 5.209 [ 0.024 | 0.016 ] 418: CMIN -7.36 CAVG -0.39 CMAX 1.31 418: LSD 0.24 418: [ 2, 4] SCORE 1327.456 NV 5313 GM -133.711 GN 39.2 [ 0.044 s ] 418: MSE 1321.881 RM 5.575 [ 0.020 | 0.024 ] 418: CMIN -7.53 CAVG -0.39 CMAX 1.33 418: LSD 1.49 418: [ 3, 5] SCORE 1315.612 NV 5295 GM -129.321 GN 46.1 [ 0.042 s ] 418: MSE 1309.647 RM 5.965 [ 0.016 | 0.026 ] 418: CMIN -7.65 CAVG -0.40 CMAX 1.39 418: LSD 1.60 418: [2] xf_out->m_type = 9, xf_in->m_type = 9 418: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 418: bspline_xform_initialize 418: rdims = (3,5,3) 418: vox_per_rgn = (10,10,10) 418: cdims = (6 8 6) 418: ** Registration worker thread finished. 418: Writing transformation ... 418: Warping... 418: Running: plm_warp_native 418: Converting input image... 418: Converting xform... 418: bspline_xform_initialize 418: rdims = (3,5,3) 418: vox_per_rgn = (10,10,10) 418: cdims = (6 8 6) 418: Creating output vf... 418: Creating output volume... 418: Running native warper... 418: bspline_warp complete. 418: Back convert to original type... 418: > Convert vf to itk 418: > Conversion complete. 418: plm_warp_native is complete. 418: Saving image... 418: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-img.mha 418: Saving vf... 418: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-vf.mha 418: Load: 0.0184538 418: Run: 0.993066 418: Save: 0.048234 418: Total: 1.05975 418: Finished! 418: 418: STDERR: 418: Not an error 516/571 Test #418: plm-reg-roi-e ......................... Passed 1.15 sec test 443 Start 443: plm-compose-a-check 443: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=13.75" "-DUPPER_THRESH=13.85" "-P" "/<>/Testing/PlmCheckInterval.cmake" 443: Test timeout computed to be: 1500 441: RETVAL: 0 441: STDOUT: Loading xform (/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha) 441: Setting PIH from VF 441: PIH is: 441: Origin = -25.0000 -25.0000 -25.0000 441: Size = 38 38 38 441: Spacing = 1.3158 1.3158 1.3158 441: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 441: Rt_study_warp: Warping m_img 441: plm_warp_itk: xform_to_itk_vf 441: plm_warp_itk: convert_to_itk 441: plm_warp_itk: warping... 441: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha) 441: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha 441: Rt_study_warp: warp and save ss. 441: Finished! 441: 441: STDERR: 441: Not an error 517/571 Test #441: plm-compose-a-warp .................... Passed 0.16 sec test 445 Start 445: plm-compose-b-warp 445: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-warp" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 445: Test timeout computed to be: 1500 443: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt 443: -- REGEX is Mean: *([-0-9.]*) 443: -- LOWER_THRESH is 13.75 443: -- UPPER_THRESH is 13.85 443: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| 443: -- PARSED_VALUE=|13.794| 443: Not an error 518/571 Test #443: plm-compose-a-check ................... Passed 0.02 sec test 447 Start 447: plm-compose-b-check 447: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=13.75" "-DUPPER_THRESH=13.85" "-P" "/<>/Testing/PlmCheckInterval.cmake" 447: Test timeout computed to be: 1500 445: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 445: PARMS is warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha 445: EXPECTED_ERRNO is 447: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt 447: -- REGEX is Mean: *([-0-9.]*) 447: -- LOWER_THRESH is 13.75 447: -- UPPER_THRESH is 13.85 447: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| 447: -- PARSED_VALUE=|13.794| 447: Not an error 519/571 Test #447: plm-compose-b-check ................... Passed 0.03 sec test 449 Start 449: plm-compose-c-warp 449: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-warp" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 449: Test timeout computed to be: 1500 449: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 449: PARMS is warp;--input;/<>/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha 449: EXPECTED_ERRNO is 438: RETVAL: 0 438: STDOUT: Loading fixed image [0]: /<>/obj-x86_64-linux-gnu/Testing/sphere-2.mha 438: Loading moving image [0]: /<>/obj-x86_64-linux-gnu/Testing/rect-3.mha 438: Loading fixed pointset [1]: /<>/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv 438: Loading moving image [1]: /<>/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha 438: Launching registration worker thread 438: Inside registration worker thread 438: Doing registration stage 438: [1] xf_in->m_type = 0, xf_out->m_type = 0 438: RESAMPLE 1 1: (1 1 1), (1 1 1) 438: RESAMPLE 1 1: (1 1 1), (1 1 1) 438: volume_calc_grad complete. 438: RESAMPLE 1 1: (1 1 1), (1 1 1) 438: volume_calc_grad complete. 438: bspline_xform_initialize 438: Warning: vox_per_rgn was less than 4. 438: Warning: vox_per_rgn was less than 4. 438: Warning: vox_per_rgn was less than 4. 438: rdims = (10,10,10) 438: vox_per_rgn = (4,4,4) 438: cdims = (13 13 13) 438: Algorithm flavor = g 438: Threading = 0 438: >> Checking JH allocation 438: BSPLINE PARMS 438: max_its = 5 438: max_feval = 5 438: BSPLINE XFORM HEADER 438: vox_per_rgn = 4 4 4 438: roi_offset = 0 0 0 438: roi_dim = 38 38 38 438: img_dc = 1 0 0 0 1 0 0 0 1 438: BST METRICS 438: MET 110100 MSE 1.000000 438: MET 010100 PDM 30.000000 438: Setting nmax, mmax = 6591 83 438: >>> START 438: This problem is unconstrained. 438: [ 0, 0] SCORE 5752.552 NV 54872 GM 5.543 GN 45.1 [ 0.051 s ] 438: MSE 5540.166 PDM 7.0795197 CMIN 0.00 CAVG 0.00 CMAX 0.00 438: LSD 0.00 438: [ 0, 1] SCORE 5663.708 NV 54872 GM 0.170 GN 43.8 [ 0.050 s ] 438: MSE 5452.803 PDM 7.0301509 CMIN -0.20 CAVG -0.00 CMAX 0.16 438: LSD 1.00 438: [ 0, 2] SCORE 5319.446 NV 54872 GM -0.447 GN 42 [ 0.017 s ] 438: MSE 5114.376 PDM 6.8356566 CMIN -1.00 CAVG -0.00 CMAX 0.78 438: LSD 5.00 438: [ 0, 3] SCORE 4111.230 NV 54872 GM -2.786 GN 35.2 [ 0.018 s ] 438: MSE 3928.063 PDM 6.1055741 CMIN -4.21 CAVG -0.00 CMAX 3.26 438: LSD 21.00 438: [ 1, 4] SCORE 1404.270 NV 54872 GM 1.576 GN 10.3 [ 0.024 s ] 438: MSE 1228.705 PDM 5.8521819 CMIN -19.53 CAVG 0.01 CMAX 16.23 438: LSD 76.08 438: [ 2, 5] SCORE 1282.464 NV 54872 GM 13.580 GN 4.68 [ 0.024 s ] 438: MSE 1058.280 PDM 7.4727950 CMIN -25.04 CAVG 0.01 CMAX 19.49 438: LSD 32.00 438: [2] xf_out->m_type = 9, xf_in->m_type = 0 438: ** Registration worker thread finished. 438: Warping... 438: Running: plm_warp_native 438: Converting input image... 438: Converting xform... 438: bspline_xform_initialize 438: rdims = (10,10,10) 438: vox_per_rgn = (4,4,4) 438: cdims = (13 13 13) 438: Creating output vf... 438: Creating output volume... 438: Running native warper... 438: bspline_warp complete. 438: Back convert to original type... 438: > Convert vf to itk 438: > Conversion complete. 438: plm_warp_native is complete. 438: Saving image... 438: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-img.nrrd 438: Saving vf... 438: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-vf.nrrd 438: Load: 0.0300219 438: Run: 0.197857 438: Save: 0.038002 438: Total: 0.265881 438: Finished! 438: 438: STDERR: 438: Not an error 520/571 Test #438: plm-reg-point-dmap-a .................. Passed 0.36 sec test 451 Start 451: plm-compose-c-check 451: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=12.5" "-DUPPER_THRESH=12.6" "-P" "/<>/Testing/PlmCheckInterval.cmake" 451: Test timeout computed to be: 1500 451: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt 451: -- REGEX is Mean: *([-0-9.]*) 451: -- LOWER_THRESH is 12.5 451: -- UPPER_THRESH is 12.6 451: -- PARSED VALUE=|Mean: 12.523 -0.008 -0.008| 451: -- PARSED_VALUE=|12.523| 451: Not an error 521/571 Test #451: plm-compose-c-check ................... Passed 0.01 sec test 454 Start 454: plm-resample-a-check 454: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 454: Test timeout computed to be: 1500 445: RETVAL: 0 445: STDOUT: Loading xform (/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha) 445: Setting PIH from VF 445: PIH is: 445: Origin = -25.0000 -25.0000 -25.0000 445: Size = 38 38 38 445: Spacing = 1.3158 1.3158 1.3158 445: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 445: Rt_study_warp: Warping m_img 445: plm_warp_itk: xform_to_itk_vf 445: plm_warp_itk: convert_to_itk 445: plm_warp_itk: warping... 445: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha) 445: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha 445: Rt_study_warp: warp and save ss. 445: Finished! 445: 445: STDERR: 445: Not an error 522/571 Test #445: plm-compose-b-warp .................... Passed 0.11 sec test 457 Start 457: plm-resample-b-check 457: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 457: Test timeout computed to be: 1500 454: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt 454: -- REGEX is AVE *([-0-9.]*) 454: -- LOWER_THRESH is -879.0 454: -- UPPER_THRESH is -878.0 454: -- PARSED VALUE=|MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859| 454: -- PARSED_VALUE=|-878.686035| 454: Not an error 523/571 Test #454: plm-resample-a-check .................. Passed 0.01 sec test 460 Start 460: plm-resample-c-check 460: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=6.67" "-DUPPER_THRESH=6.74" "-P" "/<>/Testing/PlmCheckInterval.cmake" 460: Test timeout computed to be: 1500 457: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt 457: -- REGEX is AVE *([-0-9.]*) 457: -- LOWER_THRESH is -879.0 457: -- UPPER_THRESH is -878.0 457: -- PARSED VALUE=|MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000| 457: -- PARSED_VALUE=|-878.621277| 457: Not an error 524/571 Test #457: plm-resample-b-check .................. Passed 0.01 sec test 463 Start 463: plm-scale-a-check 463: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-3.735" "-DUPPER_THRESH=-3.730" "-P" "/<>/Testing/PlmCheckInterval.cmake" 463: Test timeout computed to be: 1500 460: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt 460: -- REGEX is Mean: *([-0-9.]*) 460: -- LOWER_THRESH is 6.67 460: -- UPPER_THRESH is 6.74 460: -- PARSED VALUE=|Mean: 6.707 -0.405 -0.405| 460: -- PARSED_VALUE=|6.707| 460: Not an error 525/571 Test #460: plm-resample-c-check .................. Passed 0.01 sec test 466 Start 466: plm-scale-vf-a-check 466: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=4.000" "-DUPPER_THRESH=4.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 466: Test timeout computed to be: 1500 463: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt 463: -- REGEX is AVE *([-0-9.]*) 463: -- LOWER_THRESH is -3.735 463: -- UPPER_THRESH is -3.730 463: -- PARSED VALUE=|MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872| 463: -- PARSED_VALUE=|-3.732322| 463: Not an error 526/571 Test #463: plm-scale-a-check ..................... Passed 0.01 sec test 472 Start 472: plm-thumbnail-a-check 472: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=76.85" "-DUPPER_THRESH=76.95" "-P" "/<>/Testing/PlmCheckInterval.cmake" 472: Test timeout computed to be: 1500 449: RETVAL: 0 449: STDOUT: Loading xform (/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha) 449: Setting PIH from VF 449: PIH is: 449: Origin = -25.0000 -25.0000 -25.0000 449: Size = 38 38 38 449: Spacing = 1.3158 1.3158 1.3158 449: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 449: Rt_study_warp: Warping m_img 449: plm_warp_itk: xform_to_itk_vf 449: plm_warp_itk: convert_to_itk 449: plm_warp_itk: warping... 449: Rt_study_warp: Saving m_img (/<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha) 449: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha 449: Rt_study_warp: warp and save ss. 449: Finished! 449: 449: STDERR: 449: Not an error 527/571 Test #449: plm-compose-c-warp .................... Passed 0.10 sec test 475 Start 475: plm-thumbnail-b-check 475: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 475: Test timeout computed to be: 1500 466: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt 466: -- REGEX is Mean: *([-0-9.]*) 466: -- LOWER_THRESH is 4.000 466: -- UPPER_THRESH is 4.000 466: -- PARSED VALUE=|Mean: 4.000 0.000 0.000| 466: -- PARSED_VALUE=|4.000| 466: Not an error 472: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt 472: -- REGEX is AVE *([-0-9.]*) 472: -- LOWER_THRESH is 76.85 472: -- UPPER_THRESH is 76.95 472: -- PARSED VALUE=|MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256| 472: -- PARSED_VALUE=|76.906250| 472: Not an error 528/571 Test #472: plm-thumbnail-a-check ................. Passed 0.02 sec test 478 Start 478: plm-thumbnail-c-check 478: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=8.1" "-DUPPER_THRESH=8.3" "-P" "/<>/Testing/PlmCheckInterval.cmake" 478: Test timeout computed to be: 1500 529/571 Test #466: plm-scale-vf-a-check .................. Passed 0.02 sec test 481 Start 481: plm-intersect-check 481: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=729" "-DUPPER_THRESH=729" "-P" "/<>/Testing/PlmCheckInterval.cmake" 481: Test timeout computed to be: 1500 475: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt 475: -- REGEX is AVE *([-0-9.]*) 475: -- LOWER_THRESH is 0.0 475: -- UPPER_THRESH is 0.0 475: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256| 475: -- PARSED_VALUE=|0.000000| 475: Not an error 530/571 Test #475: plm-thumbnail-b-check ................. Passed 0.02 sec test 484 Start 484: plm-union-check 484: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1271" "-DUPPER_THRESH=1271" "-P" "/<>/Testing/PlmCheckInterval.cmake" 484: Test timeout computed to be: 1500 478: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt 478: -- REGEX is AVE *([-0-9.]*) 478: -- LOWER_THRESH is 8.1 478: -- UPPER_THRESH is 8.3 478: -- PARSED VALUE=|MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256| 478: -- PARSED_VALUE=|8.203125| 478: Not an error 531/571 Test #478: plm-thumbnail-c-check ................. Passed 0.01 sec test 487 Start 487: plm-threshold-a-check 487: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.306" "-DUPPER_THRESH=0.308" "-P" "/<>/Testing/PlmCheckInterval.cmake" 487: Test timeout computed to be: 1500 481: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt 481: -- REGEX is NONZERO *([-0-9.]*) 481: -- LOWER_THRESH is 729 481: -- UPPER_THRESH is 729 481: -- PARSED VALUE=|MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872| 481: -- PARSED_VALUE=|729| 481: Not an error 532/571 Test #481: plm-intersect-check ................... Passed 0.01 sec test 490 Start 490: plm-threshold-b-check 490: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.670" "-DUPPER_THRESH=0.672" "-P" "/<>/Testing/PlmCheckInterval.cmake" 490: Test timeout computed to be: 1500 484: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt 484: -- REGEX is NONZERO *([-0-9.]*) 484: -- LOWER_THRESH is 1271 484: -- UPPER_THRESH is 1271 484: -- PARSED VALUE=|MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872| 484: -- PARSED_VALUE=|1271| 484: Not an error 533/571 Test #484: plm-union-check ....................... Passed 0.01 sec test 493 Start 493: plm-threshold-c-check 493: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1206" "-DUPPER_THRESH=1206" "-P" "/<>/Testing/PlmCheckInterval.cmake" 493: Test timeout computed to be: 1500 490: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt 490: -- REGEX is AVE *([-0-9.]*) 490: -- LOWER_THRESH is 0.670 490: -- UPPER_THRESH is 0.672 490: -- PARSED VALUE=|MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872| 490: -- PARSED_VALUE=|0.671290| 490: Not an error 534/571 Test #490: plm-threshold-b-check ................. Passed 0.01 sec test 494 Start 494: plm-warp-pointset-a 494: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-a" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/<>/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv" "-P" "/<>/cmake/RUN_CTEST.cmake" 494: Test timeout computed to be: 1500 494: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 494: PARMS is warp;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/<>/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv 494: EXPECTED_ERRNO is 487: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt 487: -- REGEX is AVE *([-0-9.]*) 487: -- LOWER_THRESH is 0.306 487: -- UPPER_THRESH is 0.308 487: -- PARSED VALUE=|MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872| 487: -- PARSED_VALUE=|0.306732| 487: Not an error 535/571 Test #487: plm-threshold-a-check ................. Passed 0.02 sec test 495 Start 495: plm-warp-pointset-b 495: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/<>/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 495: Test timeout computed to be: 1500 493: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt 493: -- REGEX is NONZERO *([-0-9.]*) 493: -- LOWER_THRESH is 1206 493: -- UPPER_THRESH is 1206 493: -- PARSED VALUE=|MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872| 493: -- PARSED_VALUE=|1206| 493: Not an error 536/571 Test #493: plm-threshold-c-check ................. Passed 0.02 sec test 496 Start 496: plm-warp-pointset-c 496: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/<>/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv" "-P" "/<>/cmake/RUN_CTEST.cmake" 496: Test timeout computed to be: 1500 495: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 495: PARMS is warp;--xf;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/<>/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt 495: EXPECTED_ERRNO is 496: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 496: PARMS is warp;--xf;/<>/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/<>/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/<>/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv 496: EXPECTED_ERRNO is 494: RETVAL: 0 494: STDOUT: bspline_xform_initialize 494: rdims = (5,5,5) 494: vox_per_rgn = (8,8,8) 494: cdims = (8 8 8) 494: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv 494: 494: STDERR: 494: Not an error 537/571 Test #494: plm-warp-pointset-a ................... Passed 0.05 sec test 499 Start 499: plm-warp-a-check 499: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/<>/Testing/PlmCheckInterval.cmake" 499: Test timeout computed to be: 1500 499: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt 499: -- REGEX is Mean: *([-0-9.]*) 499: -- LOWER_THRESH is 5.77 499: -- UPPER_THRESH is 5.78 499: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| 499: -- PARSED_VALUE=|5.773| 499: Not an error 538/571 Test #499: plm-warp-a-check ...................... Passed 0.01 sec test 502 Start 502: plm-warp-b-check-1 502: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/<>/Testing/PlmCheckInterval.cmake" 502: Test timeout computed to be: 1500 502: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt 502: -- REGEX is Mean: *([-0-9.]*) 502: -- LOWER_THRESH is 5.77 502: -- UPPER_THRESH is 5.78 502: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| 502: -- PARSED_VALUE=|5.773| 502: Not an error 539/571 Test #502: plm-warp-b-check-1 .................... Passed 0.01 sec test 504 Start 504: plm-warp-b-check-2 504: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-775.7" "-DUPPER_THRESH=-775.6" "-P" "/<>/Testing/PlmCheckInterval.cmake" 504: Test timeout computed to be: 1500 504: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt 504: -- REGEX is AVE *([-0-9.]*) 504: -- LOWER_THRESH is -775.7 504: -- UPPER_THRESH is -775.6 504: -- PARSED VALUE=|MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872| 504: -- PARSED_VALUE=|-775.668274| 504: Not an error 540/571 Test #504: plm-warp-b-check-2 .................... Passed 0.01 sec test 507 Start 507: plm-warp-c-check 507: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/<>/Testing/PlmCheckInterval.cmake" 507: Test timeout computed to be: 1500 507: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt 507: -- REGEX is AVE *([-0-9.]*) 507: -- LOWER_THRESH is 9.2 507: -- UPPER_THRESH is 9.3 507: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| 507: -- PARSED_VALUE=|9.220003| 507: Not an error 541/571 Test #507: plm-warp-c-check ...................... Passed 0.01 sec test 510 Start 510: plm-warp-d-check 510: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/<>/Testing/PlmCheckInterval.cmake" 510: Test timeout computed to be: 1500 510: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt 510: -- REGEX is AVE *([-0-9.]*) 510: -- LOWER_THRESH is 9.2 510: -- UPPER_THRESH is 9.3 510: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| 510: -- PARSED_VALUE=|9.220003| 510: Not an error 542/571 Test #510: plm-warp-d-check ...................... Passed 0.01 sec test 513 Start 513: plm-warp-f-check-1 513: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt" "-DREGEX=Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=-0.379" "-DUPPER_THRESH=-0.378" "-P" "/<>/Testing/PlmCheckInterval.cmake" 513: Test timeout computed to be: 1500 513: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt 513: -- REGEX is Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*) 513: -- LOWER_THRESH is -0.379 513: -- UPPER_THRESH is -0.378 513: -- PARSED VALUE=|Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138| 513: -- PARSED_VALUE=|-0.3785| 513: Not an error 543/571 Test #513: plm-warp-f-check-1 .................... Passed 0.01 sec test 516 Start 516: plm-warp-g-check-1 516: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/<>/Testing/PlmCheckInterval.cmake" 516: Test timeout computed to be: 1500 516: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt 516: -- REGEX is AVE *([-0-9.]*) 516: -- LOWER_THRESH is -764.0 516: -- UPPER_THRESH is -763.6 516: -- PARSED VALUE=|MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872| 516: -- PARSED_VALUE=|-763.820862| 516: Not an error 544/571 Test #516: plm-warp-g-check-1 .................... Passed 0.01 sec test 519 Start 519: plm-warp-h-check-1 519: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=113.5" "-DUPPER_THRESH=114.0" "-P" "/<>/Testing/PlmCheckInterval.cmake" 519: Test timeout computed to be: 1500 495: RETVAL: 0 495: STDOUT: bspline_xform_initialize 495: rdims = (5,5,5) 495: vox_per_rgn = (8,8,8) 495: cdims = (8 8 8) 495: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt 495: 495: STDERR: 495: Not an error 545/571 Test #495: plm-warp-pointset-b ................... Passed 0.10 sec test 522 Start 522: plm-warp-i-check-1 522: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=114.4" "-DUPPER_THRESH=114.7" "-P" "/<>/Testing/PlmCheckInterval.cmake" 522: Test timeout computed to be: 1500 519: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt 519: -- REGEX is AVE *([-0-9.]*) 519: -- LOWER_THRESH is 113.5 519: -- UPPER_THRESH is 114.0 519: -- PARSED VALUE=|MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872| 519: -- PARSED_VALUE=|113.750511| 519: Not an error 546/571 Test #519: plm-warp-h-check-1 .................... Passed 0.01 sec test 525 Start 525: plm-xf-convert-c 525: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125" "-P" "/<>/cmake/RUN_CTEST.cmake" 525: Test timeout computed to be: 1500 522: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt 522: -- REGEX is AVE *([-0-9.]*) 522: -- LOWER_THRESH is 114.4 522: -- UPPER_THRESH is 114.7 522: -- PARSED VALUE=|MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872| 522: -- PARSED_VALUE=|114.545189| 522: Not an error 547/571 Test #522: plm-warp-i-check-1 .................... Passed 0.01 sec test 529 Start 529: plm-xf-convert-d-warp-1-check 529: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-745.8" "-DUPPER_THRESH=-744.8" "-P" "/<>/Testing/PlmCheckInterval.cmake" 529: Test timeout computed to be: 1500 496: RETVAL: 0 496: STDOUT: Trying to save: /<>/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv 496: 496: STDERR: 496: Not an error 525: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 525: PARMS is xf-convert;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125 525: EXPECTED_ERRNO is 548/571 Test #496: plm-warp-pointset-c ................... Passed 0.11 sec test 532 Start 532: plm-xf-convert-d-warp-2-check 532: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-751.0" "-DUPPER_THRESH=-744.8" "-P" "/<>/Testing/PlmCheckInterval.cmake" 532: Test timeout computed to be: 1500 529: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt 529: -- REGEX is AVE *([-0-9.]*) 529: -- LOWER_THRESH is -745.8 529: -- UPPER_THRESH is -744.8 529: -- PARSED VALUE=|MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859| 529: -- PARSED_VALUE=|-745.231567| 529: Not an error 549/571 Test #529: plm-xf-convert-d-warp-1-check ......... Passed 0.01 sec test 533 Start 533: plm-xf-convert-e 533: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-e" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/<>/cmake/RUN_CTEST.cmake" 533: Test timeout computed to be: 1500 532: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt 532: -- REGEX is AVE *([-0-9.]*) 532: -- LOWER_THRESH is -751.0 532: -- UPPER_THRESH is -744.8 532: -- PARSED VALUE=|MIN -999.991089 AVE -748.668152 MAX 0.000000 NONZERO 46980 NUMVOX 54872| 532: -- PARSED_VALUE=|-748.668152| 532: Not an error 550/571 Test #532: plm-xf-convert-d-warp-2-check ......... Passed 0.01 sec test 534 Start 534: plm-xf-convert-f 534: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-f" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/<>/obj-x86_64-linux-gnu/Testing/rect-2.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 534: Test timeout computed to be: 1500 534: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 534: PARMS is xf-convert;--filenames-without-uids;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/<>/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/<>/obj-x86_64-linux-gnu/Testing/rect-2.mha 534: EXPECTED_ERRNO is 533: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 533: PARMS is xf-convert;--filenames-without-uids;--input;/<>/Testing/Data/itk-rigid-a.tfm;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom 533: EXPECTED_ERRNO is 525: RETVAL: 0 525: STDOUT: bspline_xform_initialize 525: rdims = (1,1,1) 525: vox_per_rgn = (4,4,4) 525: cdims = (4 4 4) 525: about to xform_convert 525: Converting to (itk) vector field 525: did xform_convert 525: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha 525: 525: STDERR: 525: Not an error 551/571 Test #525: plm-xf-convert-c ...................... Passed 0.05 sec test 535 Start 535: plm-xf-convert-g 535: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-g" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-3-dicom" "-P" "/<>/cmake/RUN_CTEST.cmake" 535: Test timeout computed to be: 1500 535: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 535: PARMS is xf-convert;--filenames-without-uids;--input;/<>/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/<>/obj-x86_64-linux-gnu/Testing/rect-3-dicom 535: EXPECTED_ERRNO is 534: RETVAL: 0 534: STDOUT: Loading fixed... 534: Loading moving... 534: Saving sro 534: ITK_AFF_OFF 534: 20.000000 0.000000 0.000000 534: SRO 534: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 534: Trying to save SRO: /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f/sro.dcm 534: Done saving sro 534: 534: STDERR: 534: Not an error 552/571 Test #534: plm-xf-convert-f ...................... Passed 0.08 sec test 538 Start 538: plm-xf-convert-h-check 538: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=20" "-DUPPER_THRESH=20" "-P" "/<>/Testing/PlmCheckInterval.cmake" 538: Test timeout computed to be: 1500 533: RETVAL: 0 533: STDOUT: Loading fixed... 533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594279RTDOSE 533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594280RTSTRUCT 533: Found DCM_ReferencedFrameOfReferenceSequence! 533: Found DCM_RTReferencedStudySequence! 533: Trying to load rt structure set. 533: Adding structure (1), Foreground 533: Structure 1 has color 255\0\0 533: Trying to load rt dose. 533: Load: DoseGridScaling = 0.000000 533: RTDOSE: dim = 38 38 38 533: ipp = -243.421005 -243.421005 -243.421005 533: spc = 13.157900 13.157900 13.157900 533: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 533: Bits_alloc: 32 533: Bits_stored: 32 533: High_bit: 31 533: Pixel_rep: 0 533: rc = 1, length = 109744, npix = 54872 533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594279RTDOSE 533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594280RTSTRUCT 533: Found DCM_ReferencedFrameOfReferenceSequence! 533: Found DCM_RTReferencedStudySequence! 533: Trying to load rt structure set. 533: Adding structure (1), Foreground 533: Structure 1 has color 255\0\0 533: Trying to load rt dose. 533: Load: DoseGridScaling = 0.000000 533: RTDOSE: dim = 38 38 38 533: ipp = -243.421005 -243.421005 -243.421005 533: spc = 13.157900 13.157900 13.157900 533: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 533: Bits_alloc: 32 533: Bits_stored: 32 533: High_bit: 31 533: Pixel_rep: 0 533: rc = 1, length = 109744, npix = 54872 533: Loading moving... 533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549944RTDOSE 533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549945RTSTRUCT 533: Found DCM_ReferencedFrameOfReferenceSequence! 533: Found DCM_RTReferencedStudySequence! 533: Trying to load rt structure set. 533: Adding structure (1), Foreground 533: Structure 1 has color 255\0\0 533: Trying to load rt dose. 533: Load: DoseGridScaling = 0.000000 533: RTDOSE: dim = 38 38 38 533: ipp = -243.421005 -243.421005 -243.421005 533: spc = 13.157900 13.157900 13.157900 533: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 533: Bits_alloc: 32 533: Bits_stored: 32 533: High_bit: 31 533: Pixel_rep: 0 533: rc = 1, length = 109744, npix = 54872 533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549944RTDOSE 533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549945RTSTRUCT 533: Found DCM_ReferencedFrameOfReferenceSequence! 533: Found DCM_RTReferencedStudySequence! 533: Trying to load rt structure set. 533: Adding structure (1), Foreground 533: Structure 1 has color 255\0\0 533: Trying to load rt dose. 533: Load: DoseGridScaling = 0.000000 533: RTDOSE: dim = 38 38 38 533: ipp = -243.421005 -243.421005 -243.421005 533: spc = 13.157900 13.157900 13.157900 533: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 533: Bits_alloc: 32 533: Bits_stored: 32 533: High_bit: 31 533: Pixel_rep: 0 533: rc = 1, length = 109744, npix = 54872 533: Saving sro 533: ITK_AFF_OFF 533: 20.000000 0.000000 0.000000 533: SRO 533: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 533: Trying to save SRO: /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e/sro.dcm 533: Done saving sro 533: 533: STDERR: 533: Not an error 553/571 Test #533: plm-xf-convert-e ...................... Passed 0.09 sec test 541 Start 541: xf-invert-vf-zero-1-check 541: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/<>/Testing/PlmCheckInterval.cmake" 541: Test timeout computed to be: 1500 538: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt 538: -- REGEX is Min: *([-0-9.]*) 538: -- LOWER_THRESH is 20 538: -- UPPER_THRESH is 20 538: -- PARSED VALUE=|Min: 20.000 0.000 0.000| 538: -- PARSED_VALUE=|20.000| 538: Not an error 554/571 Test #538: plm-xf-convert-h-check ................ Passed 0.01 sec test 544 Start 544: xf-invert-vf-trans-1-check 544: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-10.0" "-DUPPER_THRESH=-9.9" "-P" "/<>/Testing/PlmCheckInterval.cmake" 544: Test timeout computed to be: 1500 541: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt 541: -- REGEX is Mean abs: *([-0-9.]*) 541: -- LOWER_THRESH is 0.000 541: -- UPPER_THRESH is 0.000 541: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| 541: -- PARSED_VALUE=|0.000| 541: Not an error 555/571 Test #541: xf-invert-vf-zero-1-check ............. Passed 0.01 sec test 546 Start 546: xf-invert-vrs-a-check 546: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-DREGEX=^Parameters: *(.*)$" "-DMATCH_STRING=0 0 0 -20 0 0" "-P" "/<>/Testing/PlmCheckString.cmake" 546: Test timeout computed to be: 1500 544: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt 544: -- REGEX is Mean: *([-0-9.]*) 544: -- LOWER_THRESH is -10.0 544: -- UPPER_THRESH is -9.9 544: -- PARSED VALUE=|Mean: -9.999 0.000 0.000| 544: -- PARSED_VALUE=|-9.999| 544: Not an error 546: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm 546: -- REGEX is ^Parameters: *(.*)$ 546: -- MATCH_STRING is 0 0 0 -20 0 0 546: -- PARSED VALUE=|Parameters: 0 0 0 -20 0 0| 546: -- PARSED_VALUE=|0 0 0 -20 0 0| 546: -- LENGTH=13 546: -- |0 0 0 -20 0 0|0 0 0 -20 0 0| 546: Not an error 556/571 Test #546: xf-invert-vrs-a-check ................. Passed 0.01 sec test 548 Start 548: xf-invert-vrs-b-check 548: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-DREGEX=^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$" "-DLOWER_THRESH=-0.52361" "-DUPPER_THRESH=-0.52359" "-P" "/<>/Testing/PlmCheckInterval.cmake" 548: Test timeout computed to be: 1500 557/571 Test #544: xf-invert-vf-trans-1-check ............ Passed 0.02 sec test 551 Start 551: proton-dose-1-check 551: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.140" "-DUPPER_THRESH=0.145" "-P" "/<>/Testing/PlmCheckInterval.cmake" 551: Test timeout computed to be: 1500 548: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm 548: -- REGEX is ^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$ 548: -- LOWER_THRESH is -0.52361 548: -- UPPER_THRESH is -0.52359 548: -- PARSED VALUE=|Parameters: -0.5236 0 0 0 0 0| 548: -- PARSED_VALUE=|-0.5236| 548: Not an error 558/571 Test #548: xf-invert-vrs-b-check ................. Passed 0.01 sec test 554 Start 554: proton-dose-4a-check 554: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/<>/Testing/PlmCheckInterval.cmake" 554: Test timeout computed to be: 1500 551: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt 551: -- REGEX is AVE *([-0-9.]*) 551: -- LOWER_THRESH is 0.140 551: -- UPPER_THRESH is 0.145 551: -- PARSED VALUE=|MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000| 551: -- PARSED_VALUE=|0.143515| 551: Not an error 559/571 Test #551: proton-dose-1-check ................... Passed 0.01 sec test 557 Start 557: proton-dose-4d-check 557: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/<>/Testing/PlmCheckInterval.cmake" 557: Test timeout computed to be: 1500 554: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt 554: -- REGEX is AVE *([-0-9.]*) 554: -- LOWER_THRESH is 0.26 554: -- UPPER_THRESH is 0.27 554: -- PARSED VALUE=|MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000| 554: -- PARSED_VALUE=|0.266114| 554: Not an error 560/571 Test #554: proton-dose-4a-check .................. Passed 0.01 sec test 560 Start 560: proton-dose-5a-check 560: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/<>/Testing/PlmCheckInterval.cmake" 560: Test timeout computed to be: 1500 557: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt 557: -- REGEX is AVE *([-0-9.]*) 557: -- LOWER_THRESH is 0.38 557: -- UPPER_THRESH is 0.39 557: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| 557: -- PARSED_VALUE=|0.386816| 557: Not an error 561/571 Test #557: proton-dose-4d-check .................. Passed 0.01 sec test 563 Start 563: proton-dose-5d-check 563: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/<>/Testing/PlmCheckInterval.cmake" 563: Test timeout computed to be: 1500 560: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt 560: -- REGEX is AVE *([-0-9.]*) 560: -- LOWER_THRESH is 0.26 560: -- UPPER_THRESH is 0.27 560: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| 560: -- PARSED_VALUE=|0.266122| 560: Not an error 535: RETVAL: 0 535: STDOUT: Loading fixed... 535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549944RTDOSE 535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549945RTSTRUCT 535: Found DCM_ReferencedFrameOfReferenceSequence! 535: Found DCM_RTReferencedStudySequence! 535: Trying to load rt structure set. 535: Adding structure (1), Foreground 535: Structure 1 has color 255\0\0 535: Trying to load rt dose. 535: Load: DoseGridScaling = 0.000000 535: RTDOSE: dim = 38 38 38 535: ipp = -243.421005 -243.421005 -243.421005 535: spc = 13.157900 13.157900 13.157900 535: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 535: Bits_alloc: 32 535: Bits_stored: 32 535: High_bit: 31 535: Pixel_rep: 0 535: rc = 1, length = 109744, npix = 54872 535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549944RTDOSE 535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10117.1659396364.549945RTSTRUCT 535: Found DCM_ReferencedFrameOfReferenceSequence! 535: Found DCM_RTReferencedStudySequence! 535: Trying to load rt structure set. 535: Adding structure (1), Foreground 535: Structure 1 has color 255\0\0 535: Trying to load rt dose. 535: Load: DoseGridScaling = 0.000000 535: RTDOSE: dim = 38 38 38 535: ipp = -243.421005 -243.421005 -243.421005 535: spc = 13.157900 13.157900 13.157900 535: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 535: Bits_alloc: 32 535: Bits_stored: 32 535: High_bit: 31 535: Pixel_rep: 0 535: rc = 1, length = 109744, npix = 54872 535: Loading moving... 535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594279RTDOSE 535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594280RTSTRUCT 535: Found DCM_ReferencedFrameOfReferenceSequence! 535: Found DCM_RTReferencedStudySequence! 535: Trying to load rt structure set. 535: Adding structure (1), Foreground 535: Structure 1 has color 255\0\0 535: Trying to load rt dose. 535: Load: DoseGridScaling = 0.000000 535: RTDOSE: dim = 38 38 38 535: ipp = -243.421005 -243.421005 -243.421005 535: spc = 13.157900 13.157900 13.157900 535: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 535: Bits_alloc: 32 535: Bits_stored: 32 535: High_bit: 31 535: Pixel_rep: 0 535: rc = 1, length = 109744, npix = 54872 535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594279RTDOSE 535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.10129.1659396364.594280RTSTRUCT 535: Found DCM_ReferencedFrameOfReferenceSequence! 535: Found DCM_RTReferencedStudySequence! 535: Trying to load rt structure set. 535: Adding structure (1), Foreground 535: Structure 1 has color 255\0\0 535: Trying to load rt dose. 535: Load: DoseGridScaling = 0.000000 535: RTDOSE: dim = 38 38 38 535: ipp = -243.421005 -243.421005 -243.421005 535: spc = 13.157900 13.157900 13.157900 535: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 535: Bits_alloc: 32 535: Bits_stored: 32 535: High_bit: 31 535: Pixel_rep: 0 535: rc = 1, length = 109744, npix = 54872 535: Saving sro 535: Trying to save SRO: /<>/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g/dro.dcm 535: Done saving sro 535: 535: STDERR: 535: Not an error 562/571 Test #535: plm-xf-convert-g ...................... Passed 0.10 sec test 566 Start 566: proton-dose-6a-check 566: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/<>/Testing/PlmCheckInterval.cmake" 566: Test timeout computed to be: 1500 563/571 Test #560: proton-dose-5a-check .................. Passed 0.02 sec test 568 Start 568: proton-dose-8d-stats 568: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d-stats" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha" "-P" "/<>/cmake/RUN_CTEST.cmake" 568: Test timeout computed to be: 1500 563: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt 563: -- REGEX is AVE *([-0-9.]*) 563: -- LOWER_THRESH is 0.38 563: -- UPPER_THRESH is 0.39 563: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| 563: -- PARSED_VALUE=|0.386816| 563: Not an error 564/571 Test #563: proton-dose-5d-check .................. Passed 0.01 sec test 570 Start 570: wed-b 570: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-b" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/<>/obj-x86_64-linux-gnu/Testing/wed-b.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 570: Test timeout computed to be: 1500 566: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt 566: -- REGEX is AVE *([-0-9.]*) 568: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 568: PARMS is stats;/<>/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha 568: EXPECTED_ERRNO is 566: -- LOWER_THRESH is 0.26 566: -- UPPER_THRESH is 0.27 566: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| 570: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 570: PARMS is wed;--command-file;/<>/obj-x86_64-linux-gnu/Testing/wed-b.txt 570: EXPECTED_ERRNO is 566: -- PARSED_VALUE=|0.266122| 566: Not an error 565/571 Test #566: proton-dose-6a-check .................. Passed 0.01 sec test 571 Start 571: wed-c 571: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-c" "-DPLM_TEST_COMMAND=/<>/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/<>/Testing" "-DPLM_BUILD_TESTING_DIR=/<>/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/<>/obj-x86_64-linux-gnu/Testing/wed-c.txt" "-P" "/<>/cmake/RUN_CTEST.cmake" 571: Test timeout computed to be: 1500 571: PLM_TEST_COMMAND is /<>/obj-x86_64-linux-gnu/plastimatch 571: PARMS is wed;--command-file;/<>/obj-x86_64-linux-gnu/Testing/wed-c.txt 571: EXPECTED_ERRNO is 568: RETVAL: 0 568: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 216000 568: 568: STDERR: 568: Not an error 566/571 Test #568: proton-dose-8d-stats .................. Passed 0.07 sec 467: RETVAL: 0 467: STDOUT: Contrast threshold = 0.030000 467: Curvature threshold = 172.302505 467: Computing Octave Level 0... (100 100 100 ...Computing Gradient......Done 467: Setting Up Gaussian Filter 0-0...scale: 0 sigma: 2 467: Setting Up Gaussian Filter 0-1...scale: 1 sigma: 1.53284 467: Done 467: Setting Up DoG Filter 0-1...Done 467: Setting Up Gaussian Filter 0-2...scale: 2 sigma: 1.93126 467: Done 467: Setting Up DoG Filter 0-2...Done 467: Setting Up Gaussian Filter 0-3...scale: 3 sigma: 2.43323 467: Done 467: Setting Up DoG Filter 0-3...Done 467: Setting Up Gaussian Filter 0-4...scale: 4 sigma: 3.06568 467: Done 467: Setting Up DoG Filter 0-4...Done 467: Setting Up Gaussian Filter 0-5...scale: 5 sigma: 3.86252 467: Done 467: Setting Up DoG Filter 0-5...Done 467: Searching for Extrema in DoG Image 0-1 ( 100 100 100 ) Scale 0.5 467: Acc. Num Max: 0 467: Acc. Num Min: 0 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 0-2 ( 100 100 100 ) Scale 0.5 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 0-3 ( 100 100 100 ) Scale 0.5 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Computing Octave Level 1... (50 50 50 ...Computing Gradient......Done 467: Setting Up Gaussian Filter 1-0...scale: 0 sigma: 2 467: Setting Up Gaussian Filter 1-1...scale: 1 sigma: 1.53284 467: Done 467: Setting Up DoG Filter 1-1...Done 467: Setting Up Gaussian Filter 1-2...scale: 2 sigma: 1.93126 467: Done 467: Setting Up DoG Filter 1-2...Done 467: Setting Up Gaussian Filter 1-3...scale: 3 sigma: 2.43323 467: Done 467: Setting Up DoG Filter 1-3...Done 467: Setting Up Gaussian Filter 1-4...scale: 4 sigma: 3.06568 467: Done 467: Setting Up DoG Filter 1-4...Done 467: Setting Up Gaussian Filter 1-5...scale: 5 sigma: 3.86252 467: Done 467: Setting Up DoG Filter 1-5...Done 467: Searching for Extrema in DoG Image 1-1 ( 50 50 50 ) Scale 1 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 1-2 ( 50 50 50 ) Scale 1 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 1-3 ( 50 50 50 ) Scale 1 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Computing Octave Level 2... (25 25 25 ...Computing Gradient......Done 467: Setting Up Gaussian Filter 2-0...scale: 0 sigma: 2 467: Setting Up Gaussian Filter 2-1...scale: 1 sigma: 1.53284 467: Done 467: Setting Up DoG Filter 2-1...Done 467: Setting Up Gaussian Filter 2-2...scale: 2 sigma: 1.93126 467: Done 467: Setting Up DoG Filter 2-2...Done 467: Setting Up Gaussian Filter 2-3...scale: 3 sigma: 2.43323 467: Done 467: Setting Up DoG Filter 2-3...Done 467: Setting Up Gaussian Filter 2-4...scale: 4 sigma: 3.06568 467: Done 467: Setting Up DoG Filter 2-4...Done 467: Setting Up Gaussian Filter 2-5...scale: 5 sigma: 3.86252 467: Done 467: Setting Up DoG Filter 2-5...Done 467: Searching for Extrema in DoG Image 2-1 ( 25 25 25 ) Scale 2 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 2-2 ( 25 25 25 ) Scale 2 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 2-3 ( 25 25 25 ) Scale 2 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Total Num Max: 0 467: Total Num Min: 24 467: Total Num Reject: 0 467: Contrast threshold = 0.030000 467: Curvature threshold = 172.302505 467: Computing Octave Level 0... (100 100 100 ...Computing Gradient......Done 467: Setting Up Gaussian Filter 0-0...scale: 0 sigma: 2 467: Setting Up Gaussian Filter 0-1...scale: 1 sigma: 1.53284 467: Done 467: Setting Up DoG Filter 0-1...Done 467: Setting Up Gaussian Filter 0-2...scale: 2 sigma: 1.93126 467: Done 467: Setting Up DoG Filter 0-2...Done 467: Setting Up Gaussian Filter 0-3...scale: 3 sigma: 2.43323 467: Done 467: Setting Up DoG Filter 0-3...Done 467: Setting Up Gaussian Filter 0-4...scale: 4 sigma: 3.06568 467: Done 467: Setting Up DoG Filter 0-4...Done 467: Setting Up Gaussian Filter 0-5...scale: 5 sigma: 3.86252 467: Done 467: Setting Up DoG Filter 0-5...Done 467: Searching for Extrema in DoG Image 0-1 ( 100 100 100 ) Scale 0.5 467: Acc. Num Max: 0 467: Acc. Num Min: 0 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 0-2 ( 100 100 100 ) Scale 0.5 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 0-3 ( 100 100 100 ) Scale 0.5 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Computing Octave Level 1... (50 50 50 ...Computing Gradient......Done 467: Setting Up Gaussian Filter 1-0...scale: 0 sigma: 2 467: Setting Up Gaussian Filter 1-1...scale: 1 sigma: 1.53284 467: Done 467: Setting Up DoG Filter 1-1...Done 467: Setting Up Gaussian Filter 1-2...scale: 2 sigma: 1.93126 467: Done 467: Setting Up DoG Filter 1-2...Done 467: Setting Up Gaussian Filter 1-3...scale: 3 sigma: 2.43323 467: Done 467: Setting Up DoG Filter 1-3...Done 467: Setting Up Gaussian Filter 1-4...scale: 4 sigma: 3.06568 467: Done 467: Setting Up DoG Filter 1-4...Done 467: Setting Up Gaussian Filter 1-5...scale: 5 sigma: 3.86252 467: Done 467: Setting Up DoG Filter 1-5...Done 467: Searching for Extrema in DoG Image 1-1 ( 50 50 50 ) Scale 1 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 1-2 ( 50 50 50 ) Scale 1 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 1-3 ( 50 50 50 ) Scale 1 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Computing Octave Level 2... (25 25 25 ...Computing Gradient......Done 467: Setting Up Gaussian Filter 2-0...scale: 0 sigma: 2 467: Setting Up Gaussian Filter 2-1...scale: 1 sigma: 1.53284 467: Done 467: Setting Up DoG Filter 2-1...Done 467: Setting Up Gaussian Filter 2-2...scale: 2 sigma: 1.93126 467: Done 467: Setting Up DoG Filter 2-2...Done 467: Setting Up Gaussian Filter 2-3...scale: 3 sigma: 2.43323 467: Done 467: Setting Up DoG Filter 2-3...Done 467: Setting Up Gaussian Filter 2-4...scale: 4 sigma: 3.06568 467: Done 467: Setting Up DoG Filter 2-4...Done 467: Setting Up Gaussian Filter 2-5...scale: 5 sigma: 3.86252 467: Done 467: Setting Up DoG Filter 2-5...Done 467: Searching for Extrema in DoG Image 2-1 ( 25 25 25 ) Scale 2 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 2-2 ( 25 25 25 ) Scale 2 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Searching for Extrema in DoG Image 2-3 ( 25 25 25 ) Scale 2 467: Acc. Num Max: 0 467: Acc. Num Min: 24 467: Acc. Num Reject: 0 467: Total Num Max: 0 467: Total Num Min: 24 467: Total Num Reject: 0 467: Keypoints1 Found: 24 467: Keypoints2 Found: 24 467: ***Keypoint Matches*** 467: [7.5, -7.5, -17.5] => [7.5, -7.5, -22.5] 467: [-7.5, 7.5, -17.5] => [-7.5, 7.5, -22.5] 467: [7.5, 7.5, -17.5] => [7.5, 7.5, -22.5] 467: [-7.5, -17.5, -7.5] => [-7.5, -17.5, -12.5] 467: [7.5, -17.5, -7.5] => [7.5, -17.5, -12.5] 467: [-17.5, -7.5, -7.5] => [-17.5, -7.5, -12.5] 467: [17.5, -7.5, -7.5] => [17.5, -7.5, -12.5] 467: [-17.5, 7.5, -7.5] => [-17.5, 7.5, -12.5] 467: [17.5, 7.5, -7.5] => [17.5, 7.5, -12.5] 467: [-7.5, 17.5, -7.5] => [-7.5, 17.5, -12.5] 467: [7.5, 17.5, -7.5] => [7.5, 17.5, -12.5] 467: [-7.5, -17.5, 7.5] => [-7.5, -17.5, 2.5] 467: [7.5, -17.5, 7.5] => [7.5, -17.5, 2.5] 467: [-17.5, -7.5, 7.5] => [-17.5, -7.5, 2.5] 467: [17.5, -7.5, 7.5] => [17.5, -7.5, 2.5] 467: [-17.5, 7.5, 7.5] => [-17.5, 7.5, 2.5] 467: [17.5, 7.5, 7.5] => [17.5, 7.5, 2.5] 467: [-7.5, 17.5, 7.5] => [-7.5, 17.5, 2.5] 467: [7.5, 17.5, 7.5] => [7.5, 17.5, 2.5] 467: [-7.5, -7.5, 17.5] => [-7.5, -7.5, 12.5] 467: [7.5, -7.5, 17.5] => [7.5, -7.5, 12.5] 467: [-7.5, 7.5, 17.5] => [-7.5, 7.5, 12.5] 467: [7.5, 7.5, 17.5] => [7.5, 7.5, 12.5] 467: 467: ***Features Matches: 23 467: 467: STDERR: 467: Not an error 567/571 Test #467: plm-sift-a ............................ Passed 4.64 sec test 468 Start 468: plm-sift-a-check-1 468: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv" "-DREGEX=^p1-1,(.*)" "-DMATCH_STRING=-7.500,7.500,-17.500" "-P" "/<>/Testing/PlmCheckString.cmake" 468: Test timeout computed to be: 1500 test 469 Start 469: plm-sift-a-check-2 469: Test command: /usr/bin/cmake "-DINFILE=/<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv" "-DREGEX=^p1-1,(.*)" "-DMATCH_STRING=-7.500,7.500,-22.500" "-P" "/<>/Testing/PlmCheckString.cmake" 469: Test timeout computed to be: 1500 468: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv 468: -- REGEX is ^p1-1,(.*) 468: -- MATCH_STRING is -7.500,7.500,-17.500 468: -- PARSED VALUE=|p1-1,-7.500,7.500,-17.500| 468: -- PARSED_VALUE=|-7.500,7.500,-17.500| 468: -- LENGTH=20 468: -- |-7.500,7.500,-17.500|-7.500,7.500,-17.500| 468: Not an error 568/571 Test #468: plm-sift-a-check-1 .................... Passed 0.01 sec 469: -- INFILE is /<>/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv 469: -- REGEX is ^p1-1,(.*) 469: -- MATCH_STRING is -7.500,7.500,-22.500 469: -- PARSED VALUE=|p1-1,-7.500,7.500,-22.500| 469: -- PARSED_VALUE=|-7.500,7.500,-22.500| 469: -- LENGTH=20 469: -- |-7.500,7.500,-22.500|-7.500,7.500,-22.500| 469: Not an error 569/571 Test #469: plm-sift-a-check-2 .................... Passed 0.01 sec 571: RETVAL: 0 571: STDOUT: Loading rpl 571: -> /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha 571: -> /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha-> /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.projv 571: Error opening /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.projv for readCouldn't open /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.nrrd for read 571: Done. 571: Skin file defined. Modifying input ct... 571: FPD = 320.500029, BPD = 821.195355 571: 100 100 501 571: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/wed-c-dew-ct.mha 571: 571: STDERR: 571: Not an error 570/571 Test #571: wed-c ................................. Passed 0.36 sec 570: RETVAL: 0 570: STDOUT: Loading rpl 570: -> /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.rpl 570: -> /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed-> /<>/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.projv 570: Error loading projv file 570: image_dim=100 100 570: Done. 570: Skin file defined. Modifying input ct... 570: FPD = 320.500029, BPD = 821.195355 570: 100 100 501 570: Computing wed ct volume... 570: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/wed-b-wed-ct.mha 570: done. 570: 100 100 501 570: Trying to write image to /<>/obj-x86_64-linux-gnu/Testing/wed-b-proj-ct.nrrd 570: 570: STDERR: 570: Not an error 571/571 Test #570: wed-b ................................. Passed 0.93 sec 100% tests passed, 0 tests failed out of 571 Total Test time (real) = 18.90 sec make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/plastimatch-1.9.3\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /<>/debian/plastimatch/usr/share/doc/plastimatch/README.TXT -- Installing: /<>/debian/plastimatch/usr/share/doc/plastimatch/COPYRIGHT.TXT -- Installing: /<>/debian/plastimatch/usr/lib/liblbfgs.a -- Installing: /<>/debian/plastimatch/usr/lib/libdevillard.a -- Installing: /<>/debian/plastimatch/usr/lib/libinih.a -- Installing: /<>/debian/plastimatch/usr/lib/libspecfun.a -- Installing: /<>/debian/plastimatch/usr/lib/libnkidecompress.a -- Installing: /<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake -- Installing: /<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake -- Installing: /<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake -- Installing: /<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake -- Installing: /<>/debian/plastimatch/usr/lib/libplmbase.so.1.9 -- Installing: /<>/debian/plastimatch/usr/lib/libplmbase.so -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plmbase_config.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/aperture.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/astroid_dose.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/beam_geometry.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/bspline_header.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/bspline_warp.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/bspline_xform.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/clamp.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/cxt_extract.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/cxt_io.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dicom_probe.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dicom_util.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/direction_cosines.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/direction_matrices.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/float_pair_list.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/gaussian.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/hnd_io.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/image_stats.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/interpolate.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_bbox.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_directions.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_create.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_load.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_region.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_save.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_image_type.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_metadata.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_point.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_pointset.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_resample.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_warp.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/make_string.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/mc_dose.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/metadata.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/mha_io.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/nki_io.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/parameter_parser.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_file_format.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_image.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_image_p.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_image_header.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_image_set.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_image_type.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_itk.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_warp.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/pointset.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/pointset_warp.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/proj_image.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/proj_matrix.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/proj_volume.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/pwlut.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rasterizer.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/raw_pointset.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/ray_data.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/ray_trace.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rpl_volume.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rt_study.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rt_study_p.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rtss.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rtss_contour.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rtss_roi.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rtplan.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/segmentation.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/slice_extract.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/slice_list.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/ss_list_io.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/threading.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/thumbnail.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/vf.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/vf_convolve.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/vf_stats.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_conv.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_fill.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_grad.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_header.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_limit.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_macros.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_resample.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_stats.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xform.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xform_convert.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xform_legacy.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xform_point.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_ct.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_demographic.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_dir.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_dose.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_patient.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_plan.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_structures.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xio_studyset.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xpm.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xpm_p.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h -- Installing: /<>/debian/plastimatch/usr/lib/libplmsys.so.1.9 -- Installing: /<>/debian/plastimatch/usr/lib/libplmsys.so -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_config.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plmsys_config.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/delayload.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dir_list.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/double_align8.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dlib_threads.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/file_util.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/logfile.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/option_range.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/path_util.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_endian.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_exception.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_int.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_macros.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_math.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_return_code.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_sleep.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_timer.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/print_and_exit.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/smart_pointer.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/string_util.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h -- Installing: /<>/debian/plastimatch/usr/lib/libplmutil.so.1.9 -- Installing: /<>/debian/plastimatch/usr/lib/libplmutil.so -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/plmutil_config.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dice_statistics.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/dvh.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/image_boundary.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/image_center.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_adjust.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_intersect.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/itk_union.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_adjust.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/xf_invert.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/zcrop.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/gabor.h -- Installing: /<>/debian/plastimatch/usr/include/plastimatch/ramp_filter.h -- Installing: /<>/debian/plastimatch/usr/bin/plastimatch -- Installing: /<>/debian/plastimatch/usr/lib/libplmdose.so.1.9 -- Installing: /<>/debian/plastimatch/usr/lib/libplmdose.so -- Installing: /<>/debian/plastimatch/usr/lib/libplmreconstruct.so.1.9 -- Installing: /<>/debian/plastimatch/usr/lib/libplmreconstruct.so -- Installing: /<>/debian/plastimatch/usr/lib/libplmregister.so.1.9 -- Installing: /<>/debian/plastimatch/usr/lib/libplmregister.so -- Installing: /<>/debian/plastimatch/usr/lib/libplmsegment.so.1.9 -- Installing: /<>/debian/plastimatch/usr/lib/libplmsegment.so make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' rm -rfv /<>/debian/plastimatch/usr/lib/*.a removed '/<>/debian/plastimatch/usr/lib/libdevillard.a' removed '/<>/debian/plastimatch/usr/lib/libinih.a' removed '/<>/debian/plastimatch/usr/lib/liblbfgs.a' removed '/<>/debian/plastimatch/usr/lib/libnkidecompress.a' removed '/<>/debian/plastimatch/usr/lib/libspecfun.a' rm -rfv /<>/debian/plastimatch/usr/lib/cmake removed '/<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake' removed '/<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake' removed '/<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake' removed '/<>/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake' removed directory '/<>/debian/plastimatch/usr/lib/cmake/plastimatch' removed directory '/<>/debian/plastimatch/usr/lib/cmake' rm -rfv /<>/debian/plastimatch/usr/include removed '/<>/debian/plastimatch/usr/include/plastimatch/cxt_io.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dicom_util.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_header.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/slice_list.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_plan.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xform_point.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xpm.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_timer.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/clamp.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_warp.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/image_boundary.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/hnd_io.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dice_statistics.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_image.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/image_center.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/image_stats.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/ramp_filter.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/interpolate.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xform.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_dir.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_config.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/double_align8.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/gaussian.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_stats.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rasterizer.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rtplan.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/thumbnail.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/proj_matrix.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/proj_image.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_int.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_resample.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_directions.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_ct.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/slice_extract.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_fill.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/aperture.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_grad.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_union.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_structures.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rt_study.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/ray_trace.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_conv.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/file_util.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/mc_dose.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_resample.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/pointset.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/mha_io.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/beam_geometry.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/path_util.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_macros.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/gabor.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dvh.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/vf.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/delayload.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/segmentation.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/ray_data.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_warp.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/bspline_header.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_patient.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/metadata.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/pwlut.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_intersect.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xf_invert.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/astroid_dose.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xpm_p.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_math.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_itk.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/option_range.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/logfile.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dir_list.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/zcrop.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rtss.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_limit.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/nki_io.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_exception.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/proj_volume.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rtss_roi.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/plm_endian.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/threading.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xform_convert.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/volume_macros.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/vf_stats.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/string_util.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/xio_dose.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/make_string.h' removed '/<>/debian/plastimatch/usr/include/plastimatch/itk_point.h' removed directory '/<>/debian/plastimatch/usr/include/plastimatch' removed directory '/<>/debian/plastimatch/usr/include' make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debugedit: debian/plastimatch/usr/lib/libplmsys.so.1.9: Unknown DWARF DW_FORM_0x1f21 94e71335efc97614ca28c4481f6467a85a914416 debugedit: debian/plastimatch/usr/lib/libplmutil.so.1.9: Unknown DWARF DW_FORM_0x1f20 e3317a0b656cb57fa8d7f3a6f4845ca4fd1bd4bf debugedit: debian/plastimatch/usr/lib/libplmsegment.so.1.9: Unknown DWARF DW_FORM_0x1f21 0b83961b434371086ab265f1412784abda81ab35 debugedit: debian/plastimatch/usr/lib/libplmbase.so.1.9: Unknown DWARF DW_FORM_0x1f20 6753ece951c75db142cff3c18fb7c49dc05cc385 debugedit: debian/plastimatch/usr/lib/libplmdose.so.1.9: Unknown DWARF DW_FORM_0x1f20 a58a3f1baeda25dc0d6bc1fb0acfacab8bba0b35 debugedit: debian/plastimatch/usr/lib/libplmreconstruct.so.1.9: Unknown DWARF DW_FORM_0x1f20 5a1b272f75ec3a19c838d784cd5698492cc5f4ef debugedit: debian/plastimatch/usr/lib/libplmregister.so.1.9: Unknown DWARF DW_FORM_0x1f21 835b984d32d697f2ad83d2457a783ab41e53720f debugedit: debian/plastimatch/usr/bin/plastimatch: Unknown DWARF DW_FORM_0x1f20 804c56116908154eba27a06e320ca69e166b63fe dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing plastimatch (in debian/plastimatch); do_strip: , oemstrip: pkgstriptranslations: processing plastimatch-dbgsym (in debian/.debhelper/plastimatch/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/plastimatch/DEBIAN/control, package plastimatch, directory debian/plastimatch pkgstripfiles: Truncating usr/share/doc/plastimatch/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package plastimatch ... pkgstripfiles: No PNG files. dpkg-deb: building package 'plastimatch' in '../plastimatch_1.9.3+dfsg.1-5_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/plastimatch/dbgsym-root/DEBIAN/control, package plastimatch-dbgsym, directory debian/.debhelper/plastimatch/dbgsym-root dpkg-deb: building package 'plastimatch-dbgsym' in 'debian/.debhelper/scratch-space/build-plastimatch/plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.deb'. Renaming plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.deb to plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.ddeb dpkg-genbuildinfo --build=binary -O../plastimatch_1.9.3+dfsg.1-5_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../plastimatch_1.9.3+dfsg.1-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-01T23:27:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ plastimatch_1.9.3+dfsg.1-5_amd64.changes: ----------------------------------------- Format: 1.8 Date: Mon, 01 Aug 2022 16:58:35 +0530 Source: plastimatch Binary: plastimatch Built-For-Profiles: noudeb Architecture: amd64 Version: 1.9.3+dfsg.1-5 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Mohammed Bilal Description: plastimatch - medical image reconstruction and registration Changes: plastimatch (1.9.3+dfsg.1-5) unstable; urgency=medium . [ Gregory C. Sharp ] * Team upload. * New upstream version 1.9.3+dfsg.1 . [ Mohammed Bilal ] * Switch to multi-orig tarball * Add autopkgtests * New upstream version 1.9.3+dfsg.1 * Add copyright for test data Checksums-Sha1: d7ce3cf0b5c5ea8d514f48e5bf97e277749937a3 36801878 plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.ddeb 5c8e393c16e1db23200ba5ca8b7f80347554e10d 10226 plastimatch_1.9.3+dfsg.1-5_amd64.buildinfo d8f89a68679df8d5fc55518f2b3dd12e4122836b 2742370 plastimatch_1.9.3+dfsg.1-5_amd64.deb Checksums-Sha256: 55302aca6a7099e473990c75d8fc237a3a3672fef0d2e9195402a5d05b1f0d3a 36801878 plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.ddeb ba76856796f67acd3c16005b1e5beaa9ecfdc4419ceab5a4245d7c3e4fc0692e 10226 plastimatch_1.9.3+dfsg.1-5_amd64.buildinfo dd9e342f6b9ca08e00d609a42a23433f66fa7c38d2191230c2e7a4ba838a0671 2742370 plastimatch_1.9.3+dfsg.1-5_amd64.deb Files: 25e881d0a480abbed9c020e22d02f03b 36801878 debug optional plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.ddeb 4ed95791976402903847095302ac46a5 10226 science optional plastimatch_1.9.3+dfsg.1-5_amd64.buildinfo ddc53fc44bd11f9ad0cf0e71c2455cae 2742370 science optional plastimatch_1.9.3+dfsg.1-5_amd64.deb /<>/plastimatch_1.9.3+dfsg.1-5_amd64.changes.new could not be renamed to /<>/plastimatch_1.9.3+dfsg.1-5_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: plastimatch Binary: plastimatch plastimatch-dbgsym Architecture: amd64 Version: 1.9.3+dfsg.1-5 Checksums-Md5: 25e881d0a480abbed9c020e22d02f03b 36801878 plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.ddeb ddc53fc44bd11f9ad0cf0e71c2455cae 2742370 plastimatch_1.9.3+dfsg.1-5_amd64.deb Checksums-Sha1: d7ce3cf0b5c5ea8d514f48e5bf97e277749937a3 36801878 plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.ddeb d8f89a68679df8d5fc55518f2b3dd12e4122836b 2742370 plastimatch_1.9.3+dfsg.1-5_amd64.deb Checksums-Sha256: 55302aca6a7099e473990c75d8fc237a3a3672fef0d2e9195402a5d05b1f0d3a 36801878 plastimatch-dbgsym_1.9.3+dfsg.1-5_amd64.ddeb dd9e342f6b9ca08e00d609a42a23433f66fa7c38d2191230c2e7a4ba838a0671 2742370 plastimatch_1.9.3+dfsg.1-5_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 01 Aug 2022 23:27:03 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.90.20220713-2ubuntu1), binutils-common (= 2.38.90.20220713-2ubuntu1), binutils-x86-64-linux-gnu (= 2.38.90.20220713-2ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), cmake (= 3.23.3-1ubuntu1), cmake-data (= 3.23.3-1ubuntu1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.1.0-3ubuntu1), cpp-11 (= 11.3.0-5ubuntu1), cpp-12 (= 12.1.0-7ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.8ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:12.1.0-3ubuntu1), g++-12 (= 12.1.0-7ubuntu1), gcc (= 4:12.1.0-3ubuntu1), gcc-11 (= 11.3.0-5ubuntu1), gcc-11-base (= 11.3.0-5ubuntu1), gcc-12 (= 12.1.0-7ubuntu1), gcc-12-base (= 12.1.0-7ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hdf5-helpers (= 1.10.7+repack-4ubuntu2), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan6 (= 11.3.0-5ubuntu1), libasan8 (= 12.1.0-7ubuntu1), libatomic1 (= 12.1.0-7ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.90.20220713-2ubuntu1), libblas-dev (= 3.10.1-2), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-7ubuntu1), libcharls-dev (= 2.3.4-1), libcharls2 (= 2.3.4-1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.38.90.20220713-2ubuntu1), libctf0 (= 2.38.90.20220713-2ubuntu1), libcurl3-gnutls (= 7.84.0-2ubuntu1), libcurl4 (= 7.84.0-2ubuntu1), libcurl4-openssl-dev (= 7.84.0-2ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdcmtk-dev (= 3.6.7-5), libdcmtk17 (= 3.6.7-5), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.8ubuntu1), libdeflate-dev (= 1.12-1), libdeflate0 (= 1.12-1), libdlib-data (= 19.24+dfsg-1), libdlib-dev (= 19.24+dfsg-1), libdlib19.1 (= 19.24+dfsg-1), libdouble-conversion-dev (= 3.2.0-1), libdouble-conversion3 (= 3.2.0-1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libexpat1-dev (= 2.4.8-1), libffi8 (= 3.4.2-4), libfftw3-bin (= 3.3.8-2ubuntu8), libfftw3-dev (= 3.3.8-2ubuntu8), libfftw3-double3 (= 3.3.8-2ubuntu8), libfftw3-long3 (= 3.3.8-2ubuntu8), libfftw3-quad3 (= 3.3.8-2ubuntu8), libfftw3-single3 (= 3.3.8-2ubuntu8), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5ubuntu1), libgcc-12-dev (= 12.1.0-7ubuntu1), libgcc-s1 (= 12.1.0-7ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgdcm-dev (= 3.0.13-2), libgdcm3.0 (= 3.0.13-2), libgfortran5 (= 12.1.0-7ubuntu1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.7-2ubuntu1), libgomp1 (= 12.1.0-7ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.90.20220713-2ubuntu1), libgssapi-krb5-2 (= 1.20-1), libhdf5-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-cpp-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-dev (= 1.10.7+repack-4ubuntu2), libhdf5-fortran-102 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-cpp-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-fortran-100 (= 1.10.7+repack-4ubuntu2), libhogweed6 (= 3.7.3-1build2), libicu-dev (= 71.1-3), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1), libinsighttoolkit5-dev (= 5.2.1-5), libinsighttoolkit5.2 (= 5.2.1-5), libisl23 (= 0.25-1), libitm1 (= 12.1.0-7ubuntu1), libjbig-dev (= 2.1-3.1build3), libjbig0 (= 2.1-3.1build3), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libjson-c5 (= 0.16-1), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblapack-dev (= 3.10.1-2), liblapack3 (= 3.10.1-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblerc-dev (= 3.0+ds-1ubuntu1), liblerc3 (= 3.0+ds-1ubuntu1), liblsan0 (= 12.1.0-7ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libminc-dev (= 2.4.03-5), libminc2-5.2.0 (= 2.4.03-5), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnetcdf-dev (= 1:4.9.0-3), libnetcdf19 (= 1:4.9.0-3), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.48.0-1), libnifti-dev (= 3.0.1-9), libnifti2-2 (= 3.0.1-9), libnifti2-dev (= 3.0.1-9), libnifticdf-dev (= 3.0.1-9), libnifticdf2 (= 3.0.1-9), libniftiio-dev (= 3.0.1-9), libniftiio2 (= 3.0.1-9), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libopencv-core-dev (= 4.6.0+dfsg-4build1), libopencv-core406 (= 4.6.0+dfsg-4build1), libopenjp2-7 (= 2.5.0-1), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-1), libpng-dev (= 1.6.37-5), libpng16-16 (= 1.6.37-5), libprocps8 (= 2:3.3.17-6ubuntu2), libpsl5 (= 0.21.0-1.2build2), libpthread-stubs0-dev (= 0.4-1build2), libquadmath0 (= 12.1.0-7ubuntu1), librhash0 (= 1.4.2-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libsocket++1 (= 1.12.13+git20131030.5d039ba-1), libsqlite3-0 (= 3.39.2-1), libsqlite3-dev (= 3.39.2-1), libssh-4 (= 0.9.6-2build1), libssl-dev (= 3.0.4-1ubuntu1), libssl3 (= 3.0.4-1ubuntu1), libstdc++-12-dev (= 12.1.0-7ubuntu1), libstdc++6 (= 12.1.0-7ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.2-2ubuntu2), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4build1), libtbb-dev (= 2021.5.0-12), libtbb12 (= 2021.5.0-12), libtbbmalloc2 (= 2021.5.0-12), libtiff-dev (= 4.4.0-3), libtiff5 (= 4.4.0-3), libtiffxx5 (= 4.4.0-3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5ubuntu1), libtsan2 (= 12.1.0-7ubuntu1), libubsan1 (= 12.1.0-7ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.2-2ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.2-1), libwebp7 (= 1.2.2-2), libwrap0 (= 7.6.q-31build2), libwrap0-dev (= 7.6.q-31build2), libx11-6 (= 2:1.8.1-1), libx11-data (= 2:1.8.1-1), libx11-dev (= 2:1.8.1-1), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.14-3ubuntu3), libxcb1-dev (= 1.14-3ubuntu3), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxml2 (= 2.9.14+dfsg-1), libxml2-dev (= 2.9.14+dfsg-1), libznz-dev (= 3.0.1-9), libznz3 (= 3.0.1-9), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-13.13), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 32), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-6ubuntu2), pybind11-dev (= 2.10.0-2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), uuid-dev (= 2.38-4ubuntu1), x11proto-dev (= 2022.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu10), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu10) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1659353315" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ plastimatch_1.9.3+dfsg.1-5_amd64.deb ------------------------------------ new Debian package, version 2.0. size 2742370 bytes: control archive=1819 bytes. 2220 bytes, 39 lines control 926 bytes, 14 lines md5sums 328 bytes, 7 lines shlibs 72 bytes, 2 lines triggers Package: plastimatch Version: 1.9.3+dfsg.1-5 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 12841 Depends: libblas3 | libblas.so.3, libc6 (>= 2.35), libdcmtk17 (>= 3.6.7), libdlib19.1 (>= 19.24+dfsg), libfftw3-double3 (>= 3.3.5), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libinsighttoolkit5.2 (>= 5.2.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Section: science Priority: optional Homepage: https://plastimatch.org Description: medical image reconstruction and registration Plastimatch is an open source software for deformable image registration. It is designed for high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography(PET). Software features include: * B-spline method for deformable image registration (GPU and multicore accelerated), including support for image masking, landmark penalties, and regularization * Demons method for deformable image registration (GPU accelerated) * Multi-atlas segmentation * ITK-based algorithms for translation, rigid, affine, multiple demons methods, and B-spline registration * Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types * Landmark-based deformable registration using thinplate splines for global registration * Landmark-based deformable registration using radial basis functions for local corrections * Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze * Extensive toolchain for radiotherapy research, including support for DICOM, DICOM-RT, DICOM SRO, XiO file format, gamma analysis, contour manipulation, contour overlap analysis, and vector field analysis Plastimatch also features two handy utilities which are not directly related to image registration: * FDK cone-beam CT reconstruction (GPU and multicore accelerated) * Digitally reconstructed radiograph (DRR) generation (GPU and multicore accelerated) drwxr-xr-x root/root 0 2022-08-01 11:28 ./ drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/ drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/bin/ -rwxr-xr-x root/root 990096 2022-08-01 11:28 ./usr/bin/plastimatch drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/lib/ lrwxrwxrwx root/root 0 2022-08-01 11:28 ./usr/lib/libplmbase.so -> libplmbase.so.1.9 -rw-r--r-- root/root 6319544 2022-08-01 11:28 ./usr/lib/libplmbase.so.1.9 lrwxrwxrwx root/root 0 2022-08-01 11:28 ./usr/lib/libplmdose.so -> libplmdose.so.1.9 -rw-r--r-- root/root 248152 2022-08-01 11:28 ./usr/lib/libplmdose.so.1.9 lrwxrwxrwx root/root 0 2022-08-01 11:28 ./usr/lib/libplmreconstruct.so -> libplmreconstruct.so.1.9 -rw-r--r-- root/root 47432 2022-08-01 11:28 ./usr/lib/libplmreconstruct.so.1.9 lrwxrwxrwx root/root 0 2022-08-01 11:28 ./usr/lib/libplmregister.so -> libplmregister.so.1.9 -rw-r--r-- root/root 1821176 2022-08-01 11:28 ./usr/lib/libplmregister.so.1.9 lrwxrwxrwx root/root 0 2022-08-01 11:28 ./usr/lib/libplmsegment.so -> libplmsegment.so.1.9 -rw-r--r-- root/root 1469144 2022-08-01 11:28 ./usr/lib/libplmsegment.so.1.9 lrwxrwxrwx root/root 0 2022-08-01 11:28 ./usr/lib/libplmsys.so -> libplmsys.so.1.9 -rw-r--r-- root/root 84296 2022-08-01 11:28 ./usr/lib/libplmsys.so.1.9 lrwxrwxrwx root/root 0 2022-08-01 11:28 ./usr/lib/libplmutil.so -> libplmutil.so.1.9 -rw-r--r-- root/root 2104184 2022-08-01 11:28 ./usr/lib/libplmutil.so.1.9 drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/share/ drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/share/doc/plastimatch/ -rw-r--r-- root/root 555 2021-01-19 21:34 ./usr/share/doc/plastimatch/COPYRIGHT.TXT -rw-r--r-- root/root 1014 2021-01-19 21:34 ./usr/share/doc/plastimatch/README.TXT -rw-r--r-- root/root 1348 2022-08-01 11:28 ./usr/share/doc/plastimatch/changelog.Debian.gz -rw-r--r-- root/root 11855 2022-08-01 11:26 ./usr/share/doc/plastimatch/copyright drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 100 2022-08-01 09:58 ./usr/share/lintian/overrides/plastimatch drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2022-08-01 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 19970 2022-08-01 11:28 ./usr/share/man/man1/plastimatch.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 1786684 Build-Time: 541 Distribution: kinetic-proposed Host Architecture: amd64 Install-Time: 20 Job: plastimatch_1.9.3+dfsg.1-5.dsc Machine Architecture: amd64 Package: plastimatch Package-Time: 562 Source-Version: 1.9.3+dfsg.1-5 Space: 1786684 Status: successful Version: 1.9.3+dfsg.1-5 -------------------------------------------------------------------------------- Finished at 2022-08-01T23:27:03Z Build needed 00:09:22, 1786684k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24236978 Scanning for processes to kill in build PACKAGEBUILD-24236978