https://launchpad.net/ubuntu/+source/plink2/2.00~a3.5-220809+dfsg-1/+build/24934700 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-arm64-020 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Dec 11:41:25 ntpdate[1873]: adjust time server 10.211.37.1 offset -0.002213 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24934700 --image-type chroot /home/buildd/filecache-default/33b5cc1d95848e4895e3aa3c2962c834df4e2086 Creating target for build PACKAGEBUILD-24934700 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24934700 Starting target for build PACKAGEBUILD-24934700 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24934700 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24934700 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24934700 Updating target for build PACKAGEBUILD-24934700 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main armhf Packages [1325 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe armhf Packages [13.8 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5866 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf Packages [105 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [49.0 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf Packages [1261 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [416 kB] Fetched 23.9 MB in 5s (5019 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: lsb-base* The following NEW packages will be installed: libjansson4 libperl5.36 perl-modules-5.36 The following packages will be upgraded: adduser binutils binutils-arm-linux-gnueabihf binutils-common ca-certificates coreutils cpp-12 dash debconf dpkg dpkg-dev g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libbinutils libcap2 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libkmod2 liblz4-1 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libubsan1 libudev1 linux-libc-dev openssl perl perl-base systemd systemd-sysv sysvinit-utils zlib1g 42 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 67.0 MB of archives. After this operation, 46.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf coreutils armhf 9.1-1ubuntu1 [1290 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf dpkg armhf 1.21.12ubuntu2 [1302 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-9ubuntu1 [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-modules-5.36 all 5.36.0-6 [2985 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libperl5.36 armhf 5.36.0-6 [4043 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl armhf 5.36.0-6 [235 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-base armhf 5.36.0-6 [1621 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf zlib1g armhf 1:1.2.13.dfsg-1ubuntu3 [48.9 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf sysvinit-utils armhf 3.05-7ubuntu1 [25.9 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf systemd-sysv armhf 252.1-1ubuntu1 [11.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf debconf all 1.5.80 [125 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libssl3 armhf 3.0.5-2ubuntu2 [1560 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libkmod2 armhf 30+20220905-1ubuntu1 [41.9 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcap2 armhf 1:2.63-1 [23.3 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liblz4-1 armhf 1.9.4-1 [57.6 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf systemd armhf 252.1-1ubuntu1 [2983 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsystemd-shared armhf 252.1-1ubuntu1 [1668 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsystemd0 armhf 252.1-1ubuntu1 [308 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcc1-0 armhf 12.2.0-10ubuntu1 [38.9 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libctf-nobfd0 armhf 2.39.50.20221211-0ubuntu1 [85.1 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libctf0 armhf 2.39.50.20221211-0ubuntu1 [86.0 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main armhf libjansson4 armhf 2.14-2 [28.9 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.39.50.20221211-0ubuntu1 [2778 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libbinutils armhf 2.39.50.20221211-0ubuntu1 [482 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils-common armhf 2.39.50.20221211-0ubuntu1 [225 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils armhf 2.39.50.20221211-0ubuntu1 [3114 B] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgomp1 armhf 12.2.0-10ubuntu1 [109 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libatomic1 armhf 12.2.0-10ubuntu1 [7660 B] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libasan8 armhf 12.2.0-10ubuntu1 [2382 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libubsan1 armhf 12.2.0-10ubuntu1 [950 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gcc-12-base armhf 12.2.0-10ubuntu1 [19.6 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libstdc++6 armhf 12.2.0-10ubuntu1 [603 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf g++-12 armhf 12.2.0-10ubuntu1 [9309 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libstdc++-12-dev armhf 12.2.0-10ubuntu1 [2238 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgcc-12-dev armhf 12.2.0-10ubuntu1 [857 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gcc-12 armhf 12.2.0-10ubuntu1 [16.2 MB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf cpp-12 armhf 12.2.0-10ubuntu1 [8151 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgcc-s1 armhf 12.2.0-10ubuntu1 [41.4 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libudev1 armhf 252.1-1ubuntu1 [81.1 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf adduser all 3.129ubuntu1 [59.0 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf openssl armhf 3.0.5-2ubuntu2 [1148 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main armhf ca-certificates all 20211016ubuntu1 [141 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf dpkg-dev all 1.21.12ubuntu2 [1071 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libdpkg-perl all 1.21.12ubuntu2 [242 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf linux-libc-dev armhf 5.19.0-23.24 [1306 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 67.0 MB in 9s (7424 kB/s) (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu1_armhf.deb ... Unpacking coreutils (9.1-1ubuntu1) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu1) ... (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.12ubuntu2_armhf.deb ... Unpacking dpkg (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.12ubuntu2) ... (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1_armhf.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) over (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-6_armhf.deb ... Unpacking perl (5.36.0-6) over (5.34.0-5ubuntu1) ... Selecting previously unselected package perl-modules-5.36. 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Installing new version of config file /etc/deluser.conf ... (Reading database ... 15295 files and directories currently installed.) Preparing to unpack .../openssl_3.0.5-2ubuntu2_armhf.deb ... Unpacking openssl (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../ca-certificates_20211016ubuntu1_all.deb ... Unpacking ca-certificates (20211016ubuntu1) over (20211016) ... Preparing to unpack .../dpkg-dev_1.21.12ubuntu2_all.deb ... Unpacking dpkg-dev (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Preparing to unpack .../libdpkg-perl_1.21.12ubuntu2_all.deb ... Unpacking libdpkg-perl (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.19.0-23.24_armhf.deb ... Unpacking linux-libc-dev:armhf (5.19.0-23.24) over (5.19.0-21.21) ... Setting up cpp-12 (12.2.0-10ubuntu1) ... Setting up binutils-common:armhf (2.39.50.20221211-0ubuntu1) ... Setting up linux-libc-dev:armhf (5.19.0-23.24) ... Setting up libctf-nobfd0:armhf (2.39.50.20221211-0ubuntu1) ... Setting up libgomp1:armhf (12.2.0-10ubuntu1) ... Setting up libjansson4:armhf (2.14-2) ... Setting up perl-modules-5.36 (5.36.0-6) ... Setting up libatomic1:armhf (12.2.0-10ubuntu1) ... Setting up libubsan1:armhf (12.2.0-10ubuntu1) ... Setting up libasan8:armhf (12.2.0-10ubuntu1) ... Setting up libbinutils:armhf (2.39.50.20221211-0ubuntu1) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libcc1-0:armhf (12.2.0-10ubuntu1) ... Setting up libperl5.36:armhf (5.36.0-6) ... Setting up libkmod2:armhf (30+20220905-1ubuntu1) ... Setting up libctf0:armhf (2.39.50.20221211-0ubuntu1) ... Setting up ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 0 added, 3 removed; done. Setting up perl (5.36.0-6) ... Setting up libgcc-12-dev:armhf (12.2.0-10ubuntu1) ... Setting up libsystemd-shared:armhf (252.1-1ubuntu1) ... Setting up libdpkg-perl (1.21.12ubuntu2) ... Setting up binutils-arm-linux-gnueabihf (2.39.50.20221211-0ubuntu1) ... Setting up libstdc++-12-dev:armhf (12.2.0-10ubuntu1) ... Setting up systemd (252.1-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up binutils (2.39.50.20221211-0ubuntu1) ... Setting up dpkg-dev (1.21.12ubuntu2) ... Setting up gcc-12 (12.2.0-10ubuntu1) ... Setting up g++-12 (12.2.0-10ubuntu1) ... Setting up systemd-sysv (252.1-1ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... (Reading database ... 15292 files and directories currently installed.) Purging configuration files for lsb-base (11.2ubuntu1) ... Processing triggers for ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24934700 armhf lunar-proposed -c chroot:build-PACKAGEBUILD-24934700 --arch=armhf --dist=lunar-proposed --nolog 'plink2_2.00~a3.5-220809+dfsg-1.dsc' Initiating build PACKAGEBUILD-24934700 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-arm64-020.buildd +==============================================================================+ | plink2 2.00~a3.5-220809+dfsg-1 (armhf) Tue, 13 Dec 2022 11:41:54 +0000 | +==============================================================================+ Package: plink2 Version: 2.00~a3.5-220809+dfsg-1 Source Version: 2.00~a3.5-220809+dfsg-1 Distribution: lunar-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24934700/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/plink2-VjdNQJ/resolver-lPJ9t3' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- plink2_2.00~a3.5-220809+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/plink2-VjdNQJ/plink2-2.00~a3.5-220809+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/plink2-VjdNQJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, libatlas-base-dev, liblapack-dev, libzstd-dev (>= 1.4.4), zlib1g-dev, libsimde-dev, libdeflate-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), help2man, libatlas-base-dev, liblapack-dev, libzstd-dev (>= 1.4.4), zlib1g-dev, libsimde-dev, libdeflate-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [424 B] Get:5 copy:/<>/apt_archive ./ Packages [509 B] Fetched 1890 B in 0s (78.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatlas-base-dev libatlas3-base libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libgfortran5 libicu71 liblapack-dev liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsimde-dev libsub-override-perl libtool libuchardet0 libxml2 libzstd-dev m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libatlas-doc liblapack-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatlas-base-dev libatlas3-base libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libgfortran5 libicu71 liblapack-dev liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsimde-dev libsub-override-perl libtool libuchardet0 libxml2 libzstd-dev m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 29.3 MB of archives. After this operation, 111 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [726 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main armhf liblocale-gettext-perl armhf 1.07-5 [14.8 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main armhf libelf1 armhf 0.188-1 [43.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main armhf libicu71 armhf 71.1-3ubuntu1 [10.3 MB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [588 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main armhf bsdextrautils armhf 2.38.1-4ubuntu1 [76.4 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main armhf libmagic-mgc armhf 1:5.41-4 [257 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main armhf libmagic1 armhf 1:5.41-4 [80.1 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main armhf file armhf 1:5.41-4 [20.6 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main armhf gettext-base armhf 0.21-10 [37.3 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main armhf groff-base armhf 1.22.4-9 [849 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main armhf libpipeline1 armhf 1.5.7-1 [26.2 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main armhf man-db armhf 2.11.1-1 [1183 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main armhf m4 armhf 1.4.19-1 [236 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main armhf autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main armhf autopoint all 0.21-10 [421 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main armhf libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main armhf libtool all 2.4.7-5 [166 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main armhf dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main armhf libsub-override-perl all 0.09-4 [8706 B] Get:25 http://ftpmaster.internal/ubuntu lunar/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main armhf dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:27 http://ftpmaster.internal/ubuntu lunar/main armhf libdw1 armhf 0.188-1 [224 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main armhf dwz armhf 0.14+20220924-2 [109 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main armhf gettext armhf 0.21-10 [802 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main armhf debhelper all 13.10.1ubuntu1 [924 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/universe armhf help2man armhf 1.49.2 [196 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgfortran5 armhf 12.2.0-10ubuntu1 [295 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/universe armhf libatlas3-base armhf 3.10.3-12ubuntu1 [2593 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/universe armhf libatlas-base-dev armhf 3.10.3-12ubuntu1 [2777 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main armhf libdeflate0 armhf 1.14-1 [55.9 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main armhf libdeflate-dev armhf 1.14-1 [50.2 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liblapack3 armhf 3.11.0-2 [1994 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liblapack-dev armhf 3.11.0-2 [2060 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/universe armhf libsimde-dev all 0.7.2-6 [261 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main armhf libzstd-dev armhf 1.5.2+dfsg-1 [307 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1ubuntu3 [880 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.3 MB in 9s (3228 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15292 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../01-libelf1_0.188-1_armhf.deb ... Unpacking libelf1:armhf (0.188-1) ... Selecting previously unselected package libicu71:armhf. Preparing to unpack .../02-libicu71_71.1-3ubuntu1_armhf.deb ... Unpacking libicu71:armhf (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.1_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38.1-4ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.41-4_armhf.deb ... Unpacking libmagic-mgc (1:5.41-4) ... 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Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1ubuntu3) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libdeflate-dev:armhf (1.14-1) ... Setting up libelf1:armhf (0.188-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.1) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:armhf (0.188-1) ... Setting up gettext (0.21-10) ... Setting up libatlas3-base:armhf (3.10.3-12ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libtool (2.4.7-5) ... Setting up libatlas-base-dev:armhf (3.10.3-12ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.2) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up liblapack3:armhf (3.11.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up liblapack-dev:armhf (3.11.0-2) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.39.50.20221211-0ubuntu1 dpkg-dev_1.21.12ubuntu2 g++-12_12.2.0-10ubuntu1 gcc-12_12.2.0-10ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39.50.20221211-0ubuntu1 binutils-arm-linux-gnueabihf_2.39.50.20221211-0ubuntu1 binutils-common_2.39.50.20221211-0ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.80 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.12ubuntu2 dpkg-dev_1.21.12ubuntu2 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-10ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-10ubuntu1 gcc-12-base_12.2.0-10ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 help2man_1.49.2 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapparmor1_3.0.7-1ubuntu4 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-10ubuntu1 libassuan0_2.5.5-5 libatlas-base-dev_3.10.3-12ubuntu1 libatlas3-base_3.10.3-12ubuntu1 libatomic1_12.2.0-10ubuntu1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39.50.20221211-0ubuntu1 libblkid1_2.38.1-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.63-1 libcc1-0_12.2.0-10ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.39.50.20221211-0ubuntu1 libctf0_2.39.50.20221211-0ubuntu1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.12ubuntu2 libdw1_0.188-1 libelf1_0.188-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-10ubuntu1 libgcc-s1_12.2.0-10ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-10ubuntu1 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-10ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libjansson4_2.14-2 libjson-c5_0.16-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkmod2_30+20220905-1ubuntu1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 liblocale-gettext-perl_1.07-5 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.2.9-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpng16-16_1.6.39-2 libprocps8_2:3.3.17-7ubuntu1 libreadline8_8.2-1.2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libsimde-dev_0.7.2-6 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1ubuntu1 libssl3_3.0.5-2ubuntu2 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.1-1ubuntu1 libsystemd0_252.1-1ubuntu1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-10ubuntu1 libuchardet0_0.0.7-1build2 libudev1_252.1-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd-dev_1.5.2+dfsg-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lto-disabled-list_36 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_252.1-1ubuntu1 systemd-sysv_252.1-1ubuntu1 sysvinit-utils_3.05-7ubuntu1 tar_1.34+dfsg-1.1 tzdata_2022g-0ubuntu2 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1ubuntu3 zlib1g-dev_1:1.2.13.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plink2 Binary: plink2 Architecture: any Version: 2.00~a3.5-220809+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://www.cog-genomics.org/plink/2.0/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plink2 Vcs-Git: https://salsa.debian.org/med-team/plink2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libatlas-base-dev, liblapack-dev, libzstd-dev (>= 1.4.4), zlib1g-dev, libsimde-dev, libdeflate-dev Package-List: plink2 deb science optional arch=any Checksums-Sha1: 20bc27f40d3a8b8544e1b3c3e316ee433bb91ded 962724 plink2_2.00~a3.5-220809+dfsg.orig.tar.xz e3e6e64f000e9c596c4379da98460bcb22353a24 52168 plink2_2.00~a3.5-220809+dfsg-1.debian.tar.xz Checksums-Sha256: af8ec65e5c0e9e74fc5a26ab5318f6a8a4c9350559bc9fd009499d7fc2cfdc1a 962724 plink2_2.00~a3.5-220809+dfsg.orig.tar.xz 81ca7bb42672e0f71270289a744ea0fd6db795a7a830764454fd06f507f05147 52168 plink2_2.00~a3.5-220809+dfsg-1.debian.tar.xz Files: 34cfcef736a13ef8e7b5ca4e5f8151d9 962724 plink2_2.00~a3.5-220809+dfsg.orig.tar.xz 5d1dcffaaef1d87b1db055708ae84758 52168 plink2_2.00~a3.5-220809+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOW64gRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEOdRAAhcg1/meBJfi91dW5LYOTBBtntd4vUoYW OTv+928vCpXzP0jzPC0H5gRvwcLIVKSZuCCtnC2yE66Bnp1Td31WyJDC7mfs9qhV fDjOgpEBSIfr97TEZd0b3b7Kk8ZIJQXim7x2WjxWQ21uQryxYncdduuJd8Q/EIAN oh0sglI5dm9mrkiuNwwZ69hQURV1P2VvZMm/IScev3vFYMNwuWPPWfd2kvvHEFNI 6262rCdfR6Nk0HKMWxS2S75comY/v4aapXPHsW13Z242j//NfBelQ/mQ8xClFpZ2 DsgBXLigm6vxlbV2NXkMCC05su7lYvowgQiF8aTTB0FwaRPpFlFoJ/IY3kDGfmuP YFvNEp6MH5paCNrZHFwp53g8qjdzor2HBk1s+6MEr9xSuxQAm2amNrW7PIjBPNV+ ZfUHZGNLxk4Ys7aoG5vFTEUzgIz/XTw5VLts8kZpRnsdIx5G30IfwcH/o6nHZuor Mou4zs+9dWYaTK/curvKaMLTYSBFR+WjX7v3UeXyWz6mQrKZg6XCzYiR4o71/Unx Pv+0fD4TETd0sdYnDfrQINSAQVqzLUAvbyIqdJ2Z8N23yYNThO7vcnXWqAKgqVaB YXCAlDOU1ck3h+d3x+aAwy66zi3ka8I3P8mPb2nutykWMvVXkgb/H4n+P1SdxMxB I6uUFDqLSK8= =UXnK -----END PGP SIGNATURE----- gpgv: Signature made Mon Dec 12 08:51:20 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plink2_2.00~a3.5-220809+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting plink2 in /<> dpkg-source: info: unpacking plink2_2.00~a3.5-220809+dfsg.orig.tar.xz dpkg-source: info: unpacking plink2_2.00~a3.5-220809+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_Makefile.patch dpkg-source: info: applying use_packaged_libdeflate.patch dpkg-source: info: applying baseline Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24934700 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24934700 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24934700 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package plink2 dpkg-buildpackage: info: source version 2.00~a3.5-220809+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=build_dynamic/ debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean cd build_dynamic && make -j4 clean make[2]: Entering directory '/<>/build_dynamic' rm -f *.o rm -f plink2 rm -f pgen_compress rm -f pgenlib.a rm -f plink2lib.a rm -f static_pgenlib_test rm -f static_plink2lib_test make[2]: Leaving directory '/<>/build_dynamic' rm -f plink2.1 rm -f pgen_compress.1 make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=build_dynamic/ dh_clean -O--sourcedirectory=build_dynamic/ debian/rules binary-arch dh binary-arch --sourcedirectory=build_dynamic/ dh_update_autotools_config -a -O--sourcedirectory=build_dynamic/ dh_autoreconf -a -O--sourcedirectory=build_dynamic/ dh_auto_configure -a -O--sourcedirectory=build_dynamic/ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build cd build_dynamic && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/build_dynamic' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/plink2-2.00~a3.5-220809+dfsg-1 -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I/usr/include/simde -O2 -std=gnu99 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security ../include/SFMT.c -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/plink2-2.00~a3.5-220809+dfsg-1 -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I/usr/include/simde -std=c++11 -O2 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -Wold-style-cast -I../simde ../include/plink2_base.cc ../include/plink2_bits.cc ../include/pgenlib_misc.cc ../include/pgenlib_read.cc ../include/pgenlib_write.cc ../pgen_compress.cc -o pgen_compress"" echo cc -O2 -std=gnu99 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -I../zstd/lib -I../zstd/lib/common -c cc -O2 -std=gnu99 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -I../zstd/lib -I../zstd/lib/common -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/plink2-2.00~a3.5-220809+dfsg-1 -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I/usr/include/simde -std=c++11 -O2 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -Wold-style-cast -I../simde ../include/plink2_base.cc ../include/plink2_bits.cc ../include/pgenlib_misc.cc ../include/pgenlib_read.cc ../include/pgenlib_write.cc ../include/plink2_bgzf.cc ../include/plink2_bitmap.cc ../include/plink2_fmath.cc ../include/plink2_stats.cc ../include/plink2_string.cc ../include/plink2_text.cc ../include/plink2_thread.cc ../include/plink2_zstfile.cc ../plink2.cc ../plink2_adjust.cc ../plink2_cmdline.cc ../plink2_common.cc ../plink2_compress_stream.cc ../plink2_data.cc ../plink2_decompress.cc ../plink2_export.cc ../plink2_export_legacy.cc ../plink2_fasta.cc ../plink2_filter.cc ../plink2_glm.cc ../plink2_glm_linear.cc ../plink2_glm_logistic.cc ../plink2_glm_shared.cc ../plink2_help.cc ../plink2_import.cc ../plink2_import_legacy.cc ../plink2_ld.cc ../plink2_matrix.cc ../plink2_matrix_calc.cc ../plink2_merge.cc ../plink2_misc.cc ../plink2_psam.cc ../plink2_pvar.cc ../plink2_random.cc ../plink2_set.cc -c ../plink2.cc: In function ‘int main(int, char**)’: ../plink2.cc:4864:96: warning: ‘%s’ directive output may be truncated writing up to 2147483635 bytes into a region of size 262098 [-Wformat-truncation=] 4864 | snprintf(g_logbuf, kLogbufSize, "Error: Invalid --export vcf-dosage= argument '%s'.\n", vcf_dosage_start); | ^~ In file included from /usr/include/stdio.h:906, from ../include/plink2_base.h:114, from ../include/plink2_zstfile.h:27, from ../plink2.cc:18: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘int main(int, char**)’ at ../plink2.cc:4864:25: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 50 and 2147483685 bytes into a destination of size 262144 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/algorithm:61, from ../include/plink2_string.h:30, from ../plink2_cmdline.h:26, from ../plink2_compress_stream.h:27, from ../plink2_import.cc:19: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = long long unsigned int*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = long long unsigned int*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1844:5, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = long long unsigned int*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = long long unsigned int*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1932:5, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = long long unsigned int*]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, inlined from ‘plink2::PglErr plink2::Plink1DosageToPgen(const char*, const char*, const char*, const char*, const Plink1DosageInfo*, const char*, MiscFlags, ImportFlags, uint32_t, FamCol, int32_t, uint32_t, uint32_t, double, uint32_t, char*, char*, ChrInfo*)’ at ../plink2_import.cc:15040:5: /usr/include/c++/12/bits/stl_algo.h:1849:32: warning: array subscript 16 is outside array bounds of ‘uint64_t [6]’ {aka ‘long long unsigned int [6]’} [-Warray-bounds] 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../plink2_import.cc: In function ‘plink2::PglErr plink2::Plink1DosageToPgen(const char*, const char*, const char*, const char*, const Plink1DosageInfo*, const char*, MiscFlags, ImportFlags, uint32_t, FamCol, int32_t, uint32_t, uint32_t, double, uint32_t, char*, char*, ChrInfo*)’: ../plink2_import.cc:15021:14: note: at offset 128 into object ‘parse_table’ of size 48 15021 | uint64_t parse_table[6]; | ^~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 ../plink2_cpu.cc -c g++ SFMT.o plink2_base.o plink2_bits.o pgenlib_misc.o pgenlib_read.o pgenlib_write.o plink2_bgzf.o plink2_bitmap.o plink2_fmath.o plink2_stats.o plink2_string.o plink2_text.o plink2_thread.o plink2_zstfile.o plink2.o plink2_adjust.o plink2_cmdline.o plink2_common.o plink2_compress_stream.o plink2_data.o plink2_decompress.o plink2_export.o plink2_export_legacy.o plink2_fasta.o plink2_filter.o plink2_glm.o plink2_glm_linear.o plink2_glm_logistic.o plink2_glm_shared.o plink2_help.o plink2_import.o plink2_import_legacy.o plink2_ld.o plink2_matrix.o plink2_matrix_calc.o plink2_merge.o plink2_misc.o plink2_psam.o plink2_pvar.o plink2_random.o plink2_set.o plink2_cpu.o -o plink2"" -llapack -lblas -lcblas -latlas -lm -lpthread -lz -lzstd -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -ldeflate make[2]: Leaving directory '/<>/build_dynamic' help2man --no-discard-stderr --name="whole genome SNP analysis" build_dynamic//pgen_compress > pgen_compress.1 make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=build_dynamic/ create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=build_dynamic/ dh_prep -a -O--sourcedirectory=build_dynamic/ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' dh_install build_dynamic/plink2 usr/bin/ dh_install build_dynamic/pgen_compress usr/bin/ make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=build_dynamic/ debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/<>' dh_installexamples -a -O--sourcedirectory=build_dynamic/ debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman debian/plink2.1 dh_installman pgen_compress.1 make[1]: Leaving directory '/<>' dh_installsystemduser -a -O--sourcedirectory=build_dynamic/ dh_perl -a -O--sourcedirectory=build_dynamic/ dh_link -a -O--sourcedirectory=build_dynamic/ dh_strip_nondeterminism -a -O--sourcedirectory=build_dynamic/ dh_compress -a -O--sourcedirectory=build_dynamic/ dh_fixperms -a -O--sourcedirectory=build_dynamic/ dh_missing -a -O--sourcedirectory=build_dynamic/ dh_dwz -a -O--sourcedirectory=build_dynamic/ dh_strip -a -O--sourcedirectory=build_dynamic/ debugedit: debian/plink2/usr/bin/plink2: Unknown DWARF DW_FORM_0x1f20 d786596cd2c8f476cf49a852e6abf1f4f2a759eb debugedit: debian/plink2/usr/bin/pgen_compress: Unknown DWARF DW_FORM_0x1f20 a07b64b42d1dfe26f07a0de903ce201f679a2433 dh_makeshlibs -a -O--sourcedirectory=build_dynamic/ dh_shlibdeps -a -O--sourcedirectory=build_dynamic/ dpkg-shlibdeps: warning: debian/plink2/usr/bin/plink2 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/plink2/usr/bin/plink2 was not linked against libstdc++.so.6 (it uses none of the library's symbols) dh_installdeb -a -O--sourcedirectory=build_dynamic/ debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-6), " make[1]: Leaving directory '/<>' dh_md5sums -a -O--sourcedirectory=build_dynamic/ dh_builddeb -a -O--sourcedirectory=build_dynamic/ INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing plink2 (in debian/plink2); do_strip: , oemstrip: pkgstriptranslations: processing plink2-dbgsym (in debian/.debhelper/plink2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/plink2/DEBIAN/control, package plink2, directory debian/plink2 .. removing usr/share/doc/plink2/changelog.gz pkgstripfiles: Truncating usr/share/doc/plink2/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package plink2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'plink2' in '../plink2_2.00~a3.5-220809+dfsg-1_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/plink2/dbgsym-root/DEBIAN/control, package plink2-dbgsym, directory debian/.debhelper/plink2/dbgsym-root dpkg-deb: building package 'plink2-dbgsym' in 'debian/.debhelper/scratch-space/build-plink2/plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.deb'. Renaming plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.deb to plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any -O../plink2_2.00~a3.5-220809+dfsg-1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../plink2_2.00~a3.5-220809+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-13T11:44:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ plink2_2.00~a3.5-220809+dfsg-1_armhf.changes: --------------------------------------------- Format: 1.8 Date: Mon, 12 Dec 2022 09:35:02 +0100 Source: plink2 Binary: plink2 Built-For-Profiles: noudeb Architecture: armhf Version: 2.00~a3.5-220809+dfsg-1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: plink2 - whole-genome association analysis toolset Changes: plink2 (2.00~a3.5-220809+dfsg-1) unstable; urgency=medium . * Team upload. * Fix watch file (seems we are at ~a3.5 released at 220809) Checksums-Sha1: 72d8f2e5c0efbd37586022159e5b5f823f3fde7c 5134400 plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.ddeb ec991d323209ad059e9a14674966597002ee328a 6045 plink2_2.00~a3.5-220809+dfsg-1_armhf.buildinfo 2b24f34084f2847f79106748ee56bb1e0b441c29 943254 plink2_2.00~a3.5-220809+dfsg-1_armhf.deb Checksums-Sha256: d4f246ed3a0991ce7f035eac812f1f06bf5de81ea643db84c84d4275a602db74 5134400 plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.ddeb 3755102de0bbe796a5cf26d04068998d3f42a99b3e668af80a57540fb28199b2 6045 plink2_2.00~a3.5-220809+dfsg-1_armhf.buildinfo e014ade697207959165d20b1c4dbaa387704ccc295e82be4ee990ebcaffedcf0 943254 plink2_2.00~a3.5-220809+dfsg-1_armhf.deb Files: cd6799df2a7dc428b20d7ccea80e7c3c 5134400 debug optional plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.ddeb 489105d158199146b73bf58df107d876 6045 science optional plink2_2.00~a3.5-220809+dfsg-1_armhf.buildinfo 43726cae84c919e13a6147ebb0583ced 943254 science optional plink2_2.00~a3.5-220809+dfsg-1_armhf.deb /<>/plink2_2.00~a3.5-220809+dfsg-1_armhf.changes.new could not be renamed to /<>/plink2_2.00~a3.5-220809+dfsg-1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: plink2 Binary: plink2 plink2-dbgsym Architecture: armhf Version: 2.00~a3.5-220809+dfsg-1 Checksums-Md5: cd6799df2a7dc428b20d7ccea80e7c3c 5134400 plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.ddeb 43726cae84c919e13a6147ebb0583ced 943254 plink2_2.00~a3.5-220809+dfsg-1_armhf.deb Checksums-Sha1: 72d8f2e5c0efbd37586022159e5b5f823f3fde7c 5134400 plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.ddeb 2b24f34084f2847f79106748ee56bb1e0b441c29 943254 plink2_2.00~a3.5-220809+dfsg-1_armhf.deb Checksums-Sha256: d4f246ed3a0991ce7f035eac812f1f06bf5de81ea643db84c84d4275a602db74 5134400 plink2-dbgsym_2.00~a3.5-220809+dfsg-1_armhf.ddeb e014ade697207959165d20b1c4dbaa387704ccc295e82be4ee990ebcaffedcf0 943254 plink2_2.00~a3.5-220809+dfsg-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Tue, 13 Dec 2022 11:44:32 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39.50.20221211-0ubuntu1), binutils-arm-linux-gnueabihf (= 2.39.50.20221211-0ubuntu1), binutils-common (= 2.39.50.20221211-0ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-10ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.80), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-1), dpkg (= 1.21.12ubuntu2), dpkg-dev (= 1.21.12ubuntu2), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-10ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-10ubuntu1), gcc-12-base (= 12.2.0-10ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), help2man (= 1.49.2), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-10ubuntu1), libatlas-base-dev (= 3.10.3-12ubuntu1), libatlas3-base (= 3.10.3-12ubuntu1), libatomic1 (= 12.2.0-10ubuntu1), libattr1 (= 1:2.5.1-3), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39.50.20221211-0ubuntu1), libblkid1 (= 2.38.1-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.63-1), libcc1-0 (= 12.2.0-10ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-1), libcrypt1 (= 1:4.4.33-1), libctf-nobfd0 (= 2.39.50.20221211-0ubuntu1), libctf0 (= 2.39.50.20221211-0ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdeflate-dev (= 1.14-1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.12ubuntu2), libdw1 (= 0.188-1), libelf1 (= 0.188-1), libfile-stripnondeterminism-perl (= 1.13.0-2), libgcc-12-dev (= 12.2.0-10ubuntu1), libgcc-s1 (= 12.2.0-10ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 12.2.0-10ubuntu1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgomp1 (= 12.2.0-10ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-1), libicu71 (= 71.1-3ubuntu1), libisl23 (= 0.25-1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), liblapack-dev (= 3.11.0-2), liblapack3 (= 3.11.0-2), liblocale-gettext-perl (= 1.07-5), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.9-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libperl5.36 (= 5.36.0-6), libpipeline1 (= 1.5.7-1), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsimde-dev (= 0.7.2-6), libsmartcols1 (= 2.38.1-4ubuntu1), libssl3 (= 3.0.5-2ubuntu2), libstdc++-12-dev (= 12.2.0-10ubuntu1), libstdc++6 (= 12.2.0-10ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.1-1ubuntu1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libubsan1 (= 12.2.0-10ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.1-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4ubuntu1), libxml2 (= 2.9.14+dfsg-1.1), libzstd-dev (= 1.5.2+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 36), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.1-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.36.0-6), perl-base (= 5.36.0-6), perl-modules-5.36 (= 5.36.0-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), xz-utils (= 5.2.9-0.0), zlib1g (= 1:1.2.13.dfsg-1ubuntu3), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu3) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1670834102" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ plink2_2.00~a3.5-220809+dfsg-1_armhf.deb ---------------------------------------- new Debian package, version 2.0. size 943254 bytes: control archive=1306 bytes. 1266 bytes, 23 lines control 901 bytes, 13 lines md5sums Package: plink2 Version: 2.00~a3.5-220809+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1809 Depends: libblas3 | libblas.so.3, libc6 (>= 2.34), libdeflate0 (>= 1.0), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 4.1.1), libzstd1 (>= 1.5.2), zlib1g (>= 1:1.1.4) Built-Using: simde (= 0.7.2-6) Section: science Priority: optional Homepage: https://www.cog-genomics.org/plink/2.0/ Description: whole-genome association analysis toolset plink expects as input the data from SNP (single nucleotide polymorphism) chips of many individuals and their phenotypical description of a disease. It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source. . SNPs can evaluated individually or as pairs for their association with the disease phenotypes. The joint investigation of copy number variations is supported. A variety of statistical tests have been implemented. . plink2 is a comprehensive update of plink and plink1.9 with new algorithms and new methods, faster and less memory consumer than the first plink. drwxr-xr-x root/root 0 2022-12-12 08:35 ./ drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/ drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/bin/ -rwxr-xr-x root/root 198232 2022-12-12 08:35 ./usr/bin/pgen_compress -rwxr-xr-x root/root 1574488 2022-12-12 08:35 ./usr/bin/plink2 drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/share/ drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/share/doc/plink2/ -rw-r--r-- root/root 278 2022-12-12 08:35 ./usr/share/doc/plink2/README.test -rw-r--r-- root/root 802 2022-12-12 08:35 ./usr/share/doc/plink2/changelog.Debian.gz -rw-r--r-- root/root 7451 2022-12-12 08:35 ./usr/share/doc/plink2/copyright drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/share/doc/plink2/examples/ -rw-r--r-- root/root 325 2022-12-12 08:35 ./usr/share/doc/plink2/examples/README -rw-r--r-- root/root 267 2022-12-12 08:35 ./usr/share/doc/plink2/examples/expected.plink.assoc -rw-r--r-- root/root 126 2022-12-12 08:35 ./usr/share/doc/plink2/examples/expected.plink.frq -rw-r--r-- root/root 27 2022-12-12 08:35 ./usr/share/doc/plink2/examples/toy.map -rw-r--r-- root/root 58 2022-12-12 08:35 ./usr/share/doc/plink2/examples/toy.ped -rw-r--r-- root/root 530 2022-12-12 08:35 ./usr/share/doc/plink2/run-unit-test drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/share/man/ drwxr-xr-x root/root 0 2022-12-12 08:35 ./usr/share/man/man1/ -rw-r--r-- root/root 537 2022-12-12 08:35 ./usr/share/man/man1/pgen_compress.1.gz -rw-r--r-- root/root 29200 2022-12-12 08:35 ./usr/share/man/man1/plink2.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 54624 Build-Time: 144 Distribution: lunar-proposed Host Architecture: armhf Install-Time: 14 Job: plink2_2.00~a3.5-220809+dfsg-1.dsc Machine Architecture: arm64 Package: plink2 Package-Time: 159 Source-Version: 2.00~a3.5-220809+dfsg-1 Space: 54624 Status: successful Version: 2.00~a3.5-220809+dfsg-1 -------------------------------------------------------------------------------- Finished at 2022-12-13T11:44:33Z Build needed 00:02:39, 54624k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24934700 Scanning for processes to kill in build PACKAGEBUILD-24934700