https://launchpad.net/ubuntu/+source/porechop/0.2.4+dfsg-3/+build/22302732 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-022 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 19 Oct 02:39:39 ntpdate[1726]: adjust time server 10.211.37.1 offset -0.000277 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22302732 --image-type chroot /home/buildd/filecache-default/679b34c61ac674bf7a7b60a9cca5f3e60877d1fc Creating target for build PACKAGEBUILD-22302732 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22302732 Starting target for build PACKAGEBUILD-22302732 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22302732 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22302732 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22302732 Updating target for build PACKAGEBUILD-22302732 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5464 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [202 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [82.8 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [646 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [342 kB] Fetched 21.7 MB in 5s (4073 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd bsdutils bzip2 ca-certificates coreutils debianutils fakeroot gzip libapparmor1 libapt-pkg6.0 libargon2-1 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libcap-ng0 libcap2 libcrypt-dev libcrypt1 libdb5.3 libdebconfclient0 libfakeroot libgdbm-compat4 libgdbm6 libgmp10 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre3 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libtasn1-6 libtinfo6 libuuid1 libzstd1 lockfile-progs make mawk mount ncurses-base ncurses-bin optipng patch pinentry-curses readline-common sed sensible-utils sysvinit-utils tar util-linux xz-utils 77 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 25.6 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt-dev armhf 1:4.4.18-4ubuntu2 [122 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt1 armhf 1:4.4.18-4ubuntu2 [94.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf base-files armhf 12ubuntu1 [63.0 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf bsdutils armhf 1:2.36.1-8ubuntu2 [86.0 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf coreutils armhf 8.32-4ubuntu3 [1302 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf debianutils armhf 5.5-1 [76.9 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf gzip armhf 1.10-4ubuntu2 [94.9 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncurses6 armhf 6.2+20210905-1 [87.4 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncursesw6 armhf 6.2+20210905-1 [118 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtinfo6 armhf 6.2+20210905-1 [88.3 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ncurses-bin armhf 6.2+20210905-1 [172 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf sed armhf 4.7-1ubuntu2 [185 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf tar armhf 1.34+dfsg-1build2 [272 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf util-linux armhf 2.36.1-8ubuntu2 [1071 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf libdebconfclient0 armhf 0.256ubuntu4 [5802 B] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf base-passwd armhf 3.5.52 [49.1 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ncurses-base all 6.2+20210905-1 [19.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf sysvinit-utils armhf 2.96-7ubuntu2 [20.1 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf bzip2 armhf 1.0.8-4ubuntu4 [34.1 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-1.0 armhf 1.0.8-4ubuntu4 [31.4 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf liblz4-1 armhf 1.9.3-2build1 [54.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma5 armhf 5.2.5-2build1 [87.3 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libzstd1 armhf 1.4.8+dfsg-3 [285 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libapt-pkg6.0 armhf 2.3.10 [897 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libseccomp2 armhf 2.5.1-1ubuntu2 [47.5 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf apt armhf 2.3.10 [1380 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf mount armhf 2.36.1-8ubuntu2 [122 kB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libattr1 armhf 1:2.5.1-1 [12.2 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit-common all 1:3.0-2ubuntu3 [4688 B] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf libcap-ng0 armhf 0.7.9-2.2build2 [10.1 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit1 armhf 1:3.0-2ubuntu3 [43.1 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libblkid1 armhf 2.36.1-8ubuntu2 [131 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf libcap2 armhf 1:2.44-1build2 [15.3 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.8ubuntu2 [648 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf libgmp10 armhf 2:6.2.1+dfsg-1ubuntu3 [207 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgpg-error0 armhf 1.42-3 [60.1 kB] Get:37 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libk5crypto3 armhf 1.18.3-7 [83.1 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5support0 armhf 1.18.3-7 [30.3 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5-3 armhf 1.18.3-7 [330 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgssapi-krb5-2 armhf 1.18.3-7 [120 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libkeyutils1 armhf 1.6.1-2ubuntu2 [8936 B] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libselinux1 armhf 3.1-3build3 [66.4 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmount1 armhf 2.36.1-8ubuntu2 [146 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre3 armhf 2:8.39-13build4 [225 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage-common all 3.1-1ubuntu3 [9606 B] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage1 armhf 3.1-1ubuntu3 [83.9 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsmartcols1 armhf 2.36.1-8ubuntu2 [90.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libuuid1 armhf 2.36.1-8ubuntu2 [22.7 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libnettle8 armhf 3.7.3-1build1 [173 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libhogweed6 armhf 3.7.3-1build1 [187 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libidn2-0 armhf 2.3.2-2 [67.8 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libp11-kit0 armhf 0.24.0-5 [218 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtasn1-6 armhf 4.17.0-2 [36.6 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf mawk armhf 1.3.4.20200120-2build1 [91.4 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf sensible-utils all 0.0.17 [20.1 kB] Get:56 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ca-certificates all 20211016 [148 kB] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libapparmor1 armhf 3.0.3-0ubuntu2 [32.2 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf libargon2-1 armhf 0~20171227-0.2build22 [20.9 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu3 [17.6 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libjson-c5 armhf 0.15-2build3 [28.9 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf readline-common all 8.1-2build1 [53.6 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline8 armhf 8.1-2build1 [128 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsqlite3-0 armhf 3.36.0-2 [571 kB] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgdbm6 armhf 1.21-1 [30.9 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf xz-utils armhf 5.2.5-2build1 [84.4 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main armhf libfakeroot armhf 1.25.3-1.1ubuntu3 [26.2 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main armhf fakeroot armhf 1.25.3-1.1ubuntu3 [62.2 kB] Get:68 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgdbm-compat4 armhf 1.21-1 [6120 B] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libisl23 armhf 0.24-2 [581 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf libmpfr6 armhf 4.1.0-3build2 [217 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libnpth0 armhf 1.6-3build1 [7254 B] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf lockfile-progs armhf 0.1.19 [9508 B] Get:73 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf make armhf 4.3-4ubuntu2 [162 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf optipng armhf 0.7.7-2 [84.7 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf patch armhf 2.7.6-7build1 [111 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf pinentry-curses armhf 1.1.1-1build1 [35.6 kB] Get:77 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmpc3 armhf 1.2.1-1 [39.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 0s (26.5 MB/s) (Reading database ... 12985 files and directories 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Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libmpfr6:armhf (4.1.0-3build2) ... Setting up optipng (0.7.7-2) ... Setting up libncurses6:armhf (6.2+20210905-1) ... Setting up xz-utils (5.2.5-2build1) ... Setting up libmpc3:armhf (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up patch (2.7.6-7build1) ... Setting up libncursesw6:armhf (6.2+20210905-1) ... Setting up mount (2.36.1-8ubuntu2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:armhf (1:4.4.18-4ubuntu2) ... Setting up mawk (1.3.4.20200120-2build1) ... Setting up libisl23:armhf (0.24-2) ... Setting up libjson-c5:armhf (0.15-2build3) ... Setting up readline-common (8.1-2build1) ... Setting up libgdbm6:armhf (1.21-1) ... Setting up pinentry-curses (1.1.1-1build1) ... Setting up libreadline8:armhf (8.1-2build1) ... Setting up libgdbm-compat4:armhf (1.21-1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22302732 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-22302732 --arch=armhf --dist=jammy-proposed --nolog porechop_0.2.4+dfsg-3.dsc Initiating build PACKAGEBUILD-22302732 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-022.buildd +==============================================================================+ | porechop 0.2.4+dfsg-3 (armhf) Tue, 19 Oct 2021 02:40:28 +0000 | +==============================================================================+ Package: porechop Version: 0.2.4+dfsg-3 Source Version: 0.2.4+dfsg-3 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22302732/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- porechop_0.2.4+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/porechop-xUjzVE/porechop-0.2.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/porechop-xUjzVE' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-tDTuIu/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-tDTuIu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tDTuIu/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-tDTuIu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tDTuIu/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-tDTuIu/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (34.3 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-tDTuIu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (57.8 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12987 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, libseqan2-dev, python3-dev, python3-setuptools Filtered Build-Depends: debhelper-compat (= 13), dh-python, libseqan2-dev, python3-dev, python3-setuptools dpkg-deb: building package 'sbuild-build-depends-porechop-dummy' in '/<>/resolver-tDTuIu/apt_archive/sbuild-build-depends-porechop-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-porechop-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-tDTuIu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tDTuIu/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-tDTuIu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tDTuIu/apt_archive ./ Sources [522 B] Get:5 copy:/<>/resolver-tDTuIu/apt_archive ./ Packages [603 B] Fetched 2088 B in 0s (67.3 kB/s) Reading package lists... Reading package lists... Install porechop build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libseqan2-dev libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.9 python3.9-dev python3.9-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-toml gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.9-venv python3.9-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libseqan2-dev libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.9 python3.9-dev python3.9-minimal sbuild-build-depends-porechop-dummy zlib1g-dev 0 upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 30.8 MB of archives. After this operation, 113 MB of additional disk space will be used. Get:1 copy:/<>/resolver-tDTuIu/apt_archive ./ sbuild-build-depends-porechop-dummy 0.invalid.0 [694 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf libpython3.9-minimal armhf 3.9.7-2build1 [772 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf libexpat1 armhf 2.4.1-2 [64.8 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main armhf python3.9-minimal armhf 3.9.7-2build1 [1751 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf python3-minimal armhf 3.9.4-1ubuntu2 [24.6 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf libmpdec3 armhf 2.5.1-2build1 [76.5 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf libpython3.9-stdlib armhf 3.9.7-2build1 [1731 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf python3.9 armhf 3.9.7-2build1 [433 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpython3-stdlib armhf 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python3-pkg-resources all 58.2.0-1 [130 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf libmagic-mgc armhf 1:5.39-3build1 [236 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libmagic1 armhf 1:5.39-3build1 [80.4 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf file armhf 1:5.39-3build1 [23.6 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf gettext-base armhf 0.21-4ubuntu3 [36.0 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libsigsegv2 armhf 2.13-1ubuntu2 [13.7 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf m4 armhf 1.4.18-5ubuntu1 [192 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf autoconf all 2.71-2 [338 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf automake all 1:1.16.4-2 [557 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf autopoint all 0.21-4ubuntu3 [422 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Setting up libpython3.9:armhf (3.9.7-2build1) ... Setting up libjs-sphinxdoc (3.5.4-2) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up python3.9 (3.9.7-2build1) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.9-dev:armhf (3.9.7-2build1) ... Setting up python3 (3.9.4-1ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up python3.9-dev (3.9.7-2build1) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up python3-pkg-resources (58.2.0-1) ... 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Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-159-generic arm64 (armv7l) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-7ubuntu2 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.10 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-arm-linux-gnueabihf_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-7ubuntu2 dash_0.5.11+git20210120+802ebd4-1build1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-python_5.20211016.1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-7ubuntu2 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-7ubuntu2 gcc-11-base_11.2.0-7ubuntu2 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu2 libapt-pkg6.0_2.3.10 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-7ubuntu2 libassuan0_2.5.5-1 libatomic1_11.2.0-7ubuntu2 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-7ubuntu1 libblkid1_2.36.1-8ubuntu2 libbz2-1.0_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-7ubuntu2 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-2 libelf1_0.185-2 libexpat1_2.4.1-2 libexpat1-dev_2.4.1-2 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-11-dev_11.2.0-7ubuntu2 libgcc-s1_11.2.0-7ubuntu2 libgcrypt20_1.8.7-5ubuntu2 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-7ubuntu2 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-sphinxdoc_3.5.4-2 libjs-underscore_1.9.1~dfsg-4 libjson-c5_0.15-2build3 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmount1_2.36.1-8ubuntu2 libmpc3_1.2.1-1 libmpdec3_2.5.1-2build1 libmpfr6_4.1.0-3build2 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-5 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1build1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libpython3-dev_3.9.4-1ubuntu2 libpython3-stdlib_3.9.4-1ubuntu2 libpython3.9_3.9.7-2build1 libpython3.9-dev_3.9.7-2build1 libpython3.9-minimal_3.9.7-2build1 libpython3.9-stdlib_3.9.7-2build1 libreadline8_8.1-2build1 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsepol1_3.1-1ubuntu2 libseqan2-dev_2.4.0+dfsg-14ubuntu1 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.36.1-8ubuntu2 libsqlite3-0_3.36.0-2 libss2_1.46.3-1ubuntu3 libssl1.1_1.1.1l-1ubuntu1 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 libsub-override-perl_0.09-2 libsystemd0_248.3-1ubuntu8 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libubsan1_11.2.0-7ubuntu2 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu2 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.13.0-19.19 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 media-types_4.0.0 mount_2.36.1-8ubuntu2 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 python3_3.9.4-1ubuntu2 python3-dev_3.9.4-1ubuntu2 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.4-1ubuntu2 python3-pkg-resources_58.2.0-1 python3-setuptools_58.2.0-1 python3.9_3.9.7-2build1 python3.9-dev_3.9.7-2build1 python3.9-minimal_3.9.7-2build1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-porechop-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021a-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Oct 14 06:36:34 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./porechop_0.2.4+dfsg-3.dsc dpkg-source: info: extracting porechop in /<>/porechop-0.2.4+dfsg dpkg-source: info: unpacking porechop_0.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking porechop_0.2.4+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_python_interpreter_line.patch dpkg-source: info: applying no_soname.patch dpkg-source: info: applying define-all-attribute-in-clean.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22302732 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22302732 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22302732 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package porechop dpkg-buildpackage: info: source version 0.2.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running clean Deleting directory: /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running build running build_py creating /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop copying porechop/misc.py -> /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop copying porechop/nanopore_read.py -> /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop copying porechop/adapters.py -> /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop copying porechop/__init__.py -> /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop copying porechop/porechop.py -> /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop copying porechop/cpp_function_wrappers.py -> /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop copying porechop/version.py -> /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop Cleaning previous compilation: make clean make[1]: Entering directory '/<>/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/<>/porechop-0.2.4+dfsg' Compiling Porechop: make -j 4 make[1]: Entering directory '/<>/porechop-0.2.4+dfsg' g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -g -O2 -ffile-prefix-map=/<>/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -g -O2 -ffile-prefix-map=/<>/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -g -O2 -ffile-prefix-map=/<>/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/<>/porechop-0.2.4+dfsg' dh_auto_test -a -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /<>/porechop-0.2.4+dfsg/debian/porechop /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running install running build running build_py Cleaning previous compilation: make clean make[1]: Entering directory '/<>/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/<>/porechop-0.2.4+dfsg' Compiling Porechop: make -j 4 make[1]: Entering directory '/<>/porechop-0.2.4+dfsg' g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -g -O2 -ffile-prefix-map=/<>/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -g -O2 -ffile-prefix-map=/<>/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -g -O2 -ffile-prefix-map=/<>/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/<>/porechop-0.2.4+dfsg' running install_lib creating /<>/porechop-0.2.4+dfsg/debian/porechop/usr creating /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib creating /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9 creating /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages creating /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop copying /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop/misc.py -> /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop copying /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop/nanopore_read.py -> /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop copying /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop/adapters.py -> /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop copying /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop/__init__.py -> /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop copying /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop/porechop.py -> /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop copying /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop/cpp_function_wrappers.py -> /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop copying /<>/porechop-0.2.4+dfsg/.pybuild/cpython3_3.9/build/porechop/version.py -> /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop byte-compiling /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop/misc.py to misc.cpython-39.pyc byte-compiling /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop/nanopore_read.py to nanopore_read.cpython-39.pyc byte-compiling /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop/adapters.py to adapters.cpython-39.pyc byte-compiling /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop/porechop.py to porechop.cpython-39.pyc byte-compiling /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop/cpp_function_wrappers.py to cpp_function_wrappers.cpython-39.pyc byte-compiling /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop/version.py to version.cpython-39.pyc running install_egg_info running egg_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop.egg-info/dependency_links.txt writing entry points to porechop.egg-info/entry_points.txt writing top-level names to porechop.egg-info/top_level.txt writing manifest file 'porechop.egg-info/SOURCES.txt' reading manifest file 'porechop.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'porechop.egg-info/SOURCES.txt' Copying porechop.egg-info to /<>/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.9/dist-packages/porechop-0.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing porechop script to /<>/porechop-0.2.4+dfsg/debian/porechop/usr/bin debian/rules override_dh_install make[1]: Entering directory '/<>/porechop-0.2.4+dfsg' dh_install mv -v debian/porechop/usr/bin/porechop-runner.py debian/porechop/usr/bin/porechop renamed 'debian/porechop/usr/bin/porechop-runner.py' -> 'debian/porechop/usr/bin/porechop' make[1]: Leaving directory '/<>/porechop-0.2.4+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/<>/porechop-0.2.4+dfsg' dh_python3 --no-ext-rename I: dh_python3 tools:114: replacing shebang in debian/porechop/usr/bin/porechop make[1]: Leaving directory '/<>/porechop-0.2.4+dfsg' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild 7c4221bd03f3973bb1dfd4c7a2105eb66c041ae0 dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package porechop: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package porechop: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing porechop (in debian/porechop); do_strip: , oemstrip: pkgstriptranslations: processing porechop-dbgsym (in debian/.debhelper/porechop/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/.debhelper/porechop/dbgsym-root/DEBIAN/control, package porechop-dbgsym, directory debian/.debhelper/porechop/dbgsym-root dpkg-deb: building package 'porechop-dbgsym' in 'debian/.debhelper/scratch-space/build-porechop/porechop-dbgsym_0.2.4+dfsg-3_armhf.deb'. pkgstripfiles: processing control file: debian/porechop/DEBIAN/control, package porechop, directory debian/porechop pkgstripfiles: Running PNG optimization (using 4 cpus) for package porechop ... pkgstripfiles: No PNG files. dpkg-deb: building package 'porechop' in '../porechop_0.2.4+dfsg-3_armhf.deb'. Renaming porechop-dbgsym_0.2.4+dfsg-3_armhf.deb to porechop-dbgsym_0.2.4+dfsg-3_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../porechop_0.2.4+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-19T02:41:38Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ porechop_0.2.4+dfsg-3_armhf.changes: ------------------------------------ Format: 1.8 Date: Thu, 14 Oct 2021 08:29:28 +0200 Source: porechop Binary: porechop Built-For-Profiles: noudeb Architecture: armhf Version: 0.2.4+dfsg-3 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: porechop - adapter trimmer for Oxford Nanopore reads Changes: porechop (0.2.4+dfsg-3) unstable; urgency=medium . * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: df437a5d14490df4e2a59b948595daf6b39e8060 382452 porechop-dbgsym_0.2.4+dfsg-3_armhf.ddeb d624fd559acdccd947dffbe35b72689f45dbc372 6700 porechop_0.2.4+dfsg-3_armhf.buildinfo 3b2783acbc3691287c7607d8a1c6d94cc6a76a63 56038 porechop_0.2.4+dfsg-3_armhf.deb Checksums-Sha256: 8581cfc79c0f8690482a3c0324a0434b34d809cab9e6e2ff447979e725d40a96 382452 porechop-dbgsym_0.2.4+dfsg-3_armhf.ddeb c3cda94b856f8a258685d7c5e0679265c330d5bf6a79a86100c2b4a2af9aa65b 6700 porechop_0.2.4+dfsg-3_armhf.buildinfo 1e49c1ac427b00f6fb687e695788bf453f95584a397bcac7182d0946b9635de3 56038 porechop_0.2.4+dfsg-3_armhf.deb Files: 16fb0b536d57854f4bc6ea3e85879b8e 382452 debug optional porechop-dbgsym_0.2.4+dfsg-3_armhf.ddeb 38028fb1a9a65b73c0d3bf6f6259f5ba 6700 science optional porechop_0.2.4+dfsg-3_armhf.buildinfo 6afa5783b15c4e9cda07de4931d14d04 56038 science optional porechop_0.2.4+dfsg-3_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: porechop Binary: porechop porechop-dbgsym Architecture: armhf Version: 0.2.4+dfsg-3 Checksums-Md5: 16fb0b536d57854f4bc6ea3e85879b8e 382452 porechop-dbgsym_0.2.4+dfsg-3_armhf.ddeb 6afa5783b15c4e9cda07de4931d14d04 56038 porechop_0.2.4+dfsg-3_armhf.deb Checksums-Sha1: df437a5d14490df4e2a59b948595daf6b39e8060 382452 porechop-dbgsym_0.2.4+dfsg-3_armhf.ddeb 3b2783acbc3691287c7607d8a1c6d94cc6a76a63 56038 porechop_0.2.4+dfsg-3_armhf.deb Checksums-Sha256: 8581cfc79c0f8690482a3c0324a0434b34d809cab9e6e2ff447979e725d40a96 382452 porechop-dbgsym_0.2.4+dfsg-3_armhf.ddeb 1e49c1ac427b00f6fb687e695788bf453f95584a397bcac7182d0946b9635de3 56038 porechop_0.2.4+dfsg-3_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Tue, 19 Oct 2021 02:41:37 +0000 Build-Path: /<>/porechop-0.2.4+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu1), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-7ubuntu1), binutils-arm-linux-gnueabihf (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), bsdextrautils (= 2.36.1-8ubuntu2), bsdutils (= 1:2.36.1-8ubuntu2), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-7ubuntu2), dash (= 0.5.11+git20210120+802ebd4-1build1), debconf (= 1.5.77), debhelper (= 13.3.4ubuntu2), debianutils (= 5.5-1), debugedit (= 1:5.0-0ubuntu2), dh-autoreconf (= 20), dh-python (= 5.20211016.1), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.39-3build1), findutils (= 4.8.0-1ubuntu2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-7ubuntu2), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-7ubuntu2), gcc-11-base (= 11.2.0-7ubuntu2), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-0ubuntu1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-7ubuntu2), libatomic1 (= 11.2.0-7ubuntu2), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), 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libpython3.9 (= 3.9.7-2build1), libpython3.9-dev (= 3.9.7-2build1), libpython3.9-minimal (= 3.9.7-2build1), libpython3.9-stdlib (= 3.9.7-2build1), libreadline8 (= 8.1-2build1), libseccomp2 (= 2.5.1-1ubuntu2), libselinux1 (= 3.1-3build3), libseqan2-dev (= 2.4.0+dfsg-14ubuntu1), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.36.1-8ubuntu2), libsqlite3-0 (= 3.36.0-2), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-7ubuntu2), libstdc++6 (= 11.2.0-7ubuntu2), libsub-override-perl (= 0.09-2), libsystemd0 (= 248.3-1ubuntu8), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libubsan1 (= 11.2.0-7ubuntu2), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8ubuntu2), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.13.0-19.19), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 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Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634192968" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ porechop_0.2.4+dfsg-3_armhf.deb ------------------------------- new Debian package, version 2.0. size 56038 bytes: control archive=1582 bytes. 963 bytes, 20 lines control 1474 bytes, 17 lines md5sums 253 bytes, 12 lines * postinst #!/bin/sh 402 bytes, 12 lines * prerm #!/bin/sh Package: porechop Version: 0.2.4+dfsg-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 205 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://rrwick.github.io/Porechop Description: adapter trimmer for Oxford Nanopore reads Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. Porechop also supports demultiplexing of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid Barcoding Kit. drwxr-xr-x root/root 0 2021-10-14 06:29 ./ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/bin/ -rwxr-xr-x root/root 172 2021-10-14 06:29 ./usr/bin/porechop drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/ -rw-r--r-- root/root 26094 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/PKG-INFO -rw-r--r-- root/root 1 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/dependency_links.txt -rw-r--r-- root/root 53 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/entry_points.txt -rw-r--r-- root/root 1 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/not-zip-safe -rw-r--r-- root/root 9 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/top_level.txt drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop/ -rw-r--r-- root/root 0 2018-10-19 03:59 ./usr/lib/python3/dist-packages/porechop/__init__.py -rw-r--r-- root/root 29280 2018-10-19 03:59 ./usr/lib/python3/dist-packages/porechop/adapters.py -rw-r--r-- root/root 2740 2018-10-19 03:59 ./usr/lib/python3/dist-packages/porechop/cpp_function_wrappers.py -rw-r--r-- root/root 46800 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop/cpp_functions.so -rw-r--r-- root/root 13007 2018-10-19 03:59 ./usr/lib/python3/dist-packages/porechop/misc.py -rw-r--r-- root/root 23749 2018-10-19 03:59 ./usr/lib/python3/dist-packages/porechop/nanopore_read.py -rw-r--r-- root/root 37503 2021-10-14 06:29 ./usr/lib/python3/dist-packages/porechop/porechop.py -rw-r--r-- root/root 153 2018-10-19 03:59 ./usr/lib/python3/dist-packages/porechop/version.py drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/share/ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/share/doc/porechop/ -rw-r--r-- root/root 871 2021-10-14 06:29 ./usr/share/doc/porechop/changelog.Debian.gz -rw-r--r-- root/root 987 2021-10-14 06:29 ./usr/share/doc/porechop/copyright drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-14 06:29 ./usr/share/man/man1/ -rw-r--r-- root/root 2162 2021-10-14 06:29 ./usr/share/man/man1/porechop.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 41 Distribution: jammy-proposed Host Architecture: armhf Install-Time: 27 Job: porechop_0.2.4+dfsg-3.dsc Machine Architecture: arm64 Package: porechop Package-Time: 70 Source-Version: 0.2.4+dfsg-3 Space: n/a Status: successful Version: 0.2.4+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-10-19T02:41:38Z Build needed 00:01:10, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22302732 Scanning for processes to kill in build PACKAGEBUILD-22302732