RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux tipua 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 19 Dec 17:11:01 ntpdate[23168]: adjust time server 10.211.37.1 offset 0.000013 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5367325', '/home/buildd/filecache-default/bbd96c485e13ab8d985945617c0760e05eb3f309'] Unpacking chroot for build PACKAGEBUILD-5367325 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5367325'] Mounting chroot for build PACKAGEBUILD-5367325 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5367325', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5367325 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5367325', 'amd64'] Updating debian chroot for build PACKAGEBUILD-5367325 Ign http://ftpmaster.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://ftpmaster.internal trusty-proposed InRelease Ign http://archive-team.internal trusty Release.gpg Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Get:2 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:3 http://archive-team.internal trusty Release [730 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [58.5 kB] Get:7 http://ftpmaster.internal trusty-security Release [58.5 kB] Get:8 http://ftpmaster.internal trusty-updates Release [58.5 kB] Get:9 http://ftpmaster.internal trusty-proposed Release [58.5 kB] Get:10 http://archive-team.internal trusty/main amd64 Packages Get:11 http://ftpmaster.internal trusty/main amd64 Packages [1264 kB] Ign http://archive-team.internal trusty/main Translation-en Get:12 http://ftpmaster.internal trusty/universe amd64 Packages [5805 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [731 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [4000 kB] Get:15 http://ftpmaster.internal trusty-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main amd64 Packages [76.6 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe amd64 Packages [337 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [46.2 kB] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [180 kB] Fetched 12.7 MB in 4s (2853 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils bsdutils build-essential coreutils cpp cpp-4.8 e2fslibs e2fsprogs fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gnupg gpgv hostname klibc-utils libapt-pkg4.12 libasan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libdb5.3 libfakeroot libgcc-4.8-dev libgcc1 libgcrypt11 libgmp10 libgomp1 libitm1 libklibc liblockfile-bin liblockfile1 libmount1 libplymouth2 libquadmath0 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 libtsan0 libustr-1.0-1 libuuid1 linux-libc-dev mount multiarch-support perl perl-base perl-modules plymouth sed tar util-linux 60 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 44.4 MB of archives. After this operation, 197 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main coreutils amd64 8.21-1ubuntu4 [1089 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libc6-dev amd64 2.18-0ubuntu1 [1920 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libc-dev-bin amd64 2.18-0ubuntu1 [69.0 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libc6 amd64 2.18-0ubuntu1 [4730 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libc-bin amd64 2.18-0ubuntu1 [1162 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev amd64 3.12.0-7.15 [727 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 amd64 4.8.2-10ubuntu1 [28.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 amd64 4.8.2-10ubuntu1 [23.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libasan0 amd64 4.8.2-10ubuntu1 [63.1 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base amd64 4.8.2-10ubuntu1 [14.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 amd64 1:4.8.2-10ubuntu1 [37.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 amd64 4.8.2-10ubuntu1 [8632 B] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libtsan0 amd64 4.8.2-10ubuntu1 [94.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libquadmath0 amd64 4.8.2-10ubuntu1 [126 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 amd64 4.8.2-10ubuntu1 [4446 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev amd64 4.8.2-10ubuntu1 [1050 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 amd64 4.8.2-10ubuntu1 [7020 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 amd64 4.8.2-10ubuntu1 [4952 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev amd64 4.8.2-10ubuntu1 [1688 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 amd64 4.8.2-10ubuntu1 [251 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libgmp10 amd64 2:5.1.2+dfsg-3ubuntu3 [219 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main binutils amd64 2.24-2ubuntu2 [2068 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs amd64 1.42.8-1ubuntu3 [179 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs amd64 1.42.8-1ubuntu3 [642 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main hostname amd64 3.15ubuntu1 [11.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main mount amd64 2.20.1-5.1ubuntu11 [114 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main perl amd64 5.18.1-5 [2629 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main perl-base amd64 5.18.1-5 [1147 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.1-5 [2680 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libdb5.3 amd64 5.3.28-3ubuntu1 [647 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main sed amd64 4.2.2-2ubuntu2 [139 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main tar amd64 1.27-4 [196 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main util-linux amd64 2.20.1-5.1ubuntu11 [457 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 amd64 0.9.14.1ubuntu1 [628 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main gpgv amd64 1.4.15-1.1ubuntu2 [159 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main gnupg amd64 1.4.15-1.1ubuntu2 [609 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main apt amd64 0.9.14.1ubuntu1 [951 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main bsdutils amd64 1:2.20.1-5.1ubuntu11 [33.8 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libuuid1 amd64 2.20.1-5.1ubuntu11 [10.8 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libblkid1 amd64 2.20.1-5.1ubuntu11 [62.5 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 amd64 1.42.8-1ubuntu3 [61.2 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libmount1 amd64 2.20.1-5.1ubuntu11 [60.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libss2 amd64 1.42.8-1ubuntu3 [65.5 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libustr-1.0-1 amd64 1.0.4-3ubuntu2 [63.5 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main libgcrypt11 amd64 1.5.3-2ubuntu4 [238 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile-bin amd64 1.09-6ubuntu1 [10.8 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile1 amd64 1.09-6ubuntu1 [8056 B] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 amd64 3.8.1-1ubuntu3 [336 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main plymouth amd64 0.8.8-0ubuntu12 [98.1 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libplymouth2 amd64 0.8.8-0ubuntu12 [76.4 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main multiarch-support amd64 2.18-0ubuntu1 [4484 B] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main klibc-utils amd64 2.0.2-1ubuntu2 [107 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main libklibc amd64 2.0.2-1ubuntu2 [40.5 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https amd64 0.9.14.1ubuntu1 [24.7 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main cpp amd64 4:4.8.2-1ubuntu2 [27.7 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main gcc amd64 4:4.8.2-1ubuntu2 [5006 B] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main g++ amd64 4:4.8.2-1ubuntu2 [1490 B] Get:58 http://ftpmaster.internal/ubuntu/ trusty-proposed/main build-essential amd64 11.6ubuntu6 [4838 B] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main libfakeroot amd64 1.20-3ubuntu1 [25.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main fakeroot amd64 1.20-3ubuntu1 [55.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.4 MB in 1s (26.4 MB/s) (Reading database ... 11978 files and directories currently installed.) Preparing to replace coreutils 8.21-1ubuntu3 (using .../coreutils_8.21-1ubuntu4_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.21-1ubuntu4) ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace libc6-dev:amd64 2.17-93ubuntu4 (using .../libc6-dev_2.18-0ubuntu1_amd64.deb) ... Unpacking replacement libc6-dev:amd64 ... Preparing to replace libc-dev-bin 2.17-93ubuntu4 (using .../libc-dev-bin_2.18-0ubuntu1_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6:amd64 2.17-93ubuntu4 (using .../libc6_2.18-0ubuntu1_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Unpacking replacement libc6:amd64 ... Preparing to replace libgcc1:amd64 1:4.8.2-1ubuntu2 (using .../libgcc1_1%3a4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Preparing to replace gcc-4.8-base:amd64 4.8.2-1ubuntu2 (using .../gcc-4.8-base_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8-base:amd64 ... Setting up gcc-4.8-base:amd64 (4.8.2-10ubuntu1) ... Setting up libc6:amd64 (2.18-0ubuntu1) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Setting up libgcc1:amd64 (1:4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11980 files and directories currently installed.) Preparing to replace libc-bin 2.17-93ubuntu4 (using .../libc-bin_2.18-0ubuntu1_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.18-0ubuntu1) ... (Reading database ... 11980 files and directories currently installed.) Preparing to replace linux-libc-dev:amd64 3.12.0-5.13 (using .../linux-libc-dev_3.12.0-7.15_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Preparing to replace libitm1:amd64 4.8.2-1ubuntu2 (using .../libitm1_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libitm1:amd64 ... Preparing to replace libgomp1:amd64 4.8.2-1ubuntu2 (using .../libgomp1_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... Preparing to replace libasan0:amd64 4.8.2-1ubuntu2 (using .../libasan0_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libasan0:amd64 ... Preparing to replace libatomic1:amd64 4.8.2-1ubuntu2 (using .../libatomic1_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libatomic1:amd64 ... Preparing to replace libtsan0:amd64 4.8.2-1ubuntu2 (using .../libtsan0_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libtsan0:amd64 ... Preparing to replace libquadmath0:amd64 4.8.2-1ubuntu2 (using .../libquadmath0_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Preparing to replace cpp-4.8 4.8.2-1ubuntu2 (using .../cpp-4.8_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace libstdc++-4.8-dev:amd64 4.8.2-1ubuntu2 (using .../libstdc++-4.8-dev_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libstdc++-4.8-dev:amd64 ... Preparing to replace g++-4.8 4.8.2-1ubuntu2 (using .../g++-4.8_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.2-1ubuntu2 (using .../gcc-4.8_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:amd64 4.8.2-1ubuntu2 (using .../libgcc-4.8-dev_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libgcc-4.8-dev:amd64 ... Preparing to replace libstdc++6:amd64 4.8.2-1ubuntu2 (using .../libstdc++6_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11979 files and directories currently installed.) 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(Reading database ... 11979 files and directories currently installed.) Preparing to replace mount 2.20.1-5.1ubuntu10 (using .../mount_2.20.1-5.1ubuntu11_amd64.deb) ... Unpacking replacement mount ... Setting up mount (2.20.1-5.1ubuntu11) ... (Reading database ... 11979 files and directories currently installed.) Preparing to replace perl 5.18.1-4build1 (using .../perl_5.18.1-5_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.18.1-4build1 (using .../perl-base_5.18.1-5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-5) ... (Reading database ... 11979 files and directories currently installed.) Preparing to replace perl-modules 5.18.1-4build1 (using .../perl-modules_5.18.1-5_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libdb5.3:amd64 5.3.28-3 (using .../libdb5.3_5.3.28-3ubuntu1_amd64.deb) ... Unpacking replacement libdb5.3:amd64 ... Setting up libdb5.3:amd64 (5.3.28-3ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11979 files and directories currently installed.) Preparing to replace sed 4.2.2-2ubuntu1 (using .../sed_4.2.2-2ubuntu2_amd64.deb) ... Unpacking replacement sed ... Setting up sed (4.2.2-2ubuntu2) ... (Reading database ... 11979 files and directories currently installed.) Preparing to replace tar 1.27-3 (using .../archives/tar_1.27-4_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.27-4) ... (Reading database ... 11979 files and directories currently installed.) Preparing to replace util-linux 2.20.1-5.1ubuntu10 (using .../util-linux_2.20.1-5.1ubuntu11_amd64.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.20.1-5.1ubuntu11) ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libapt-pkg4.12:amd64 0.9.13.1~ubuntu1 (using .../libapt-pkg4.12_0.9.14.1ubuntu1_amd64.deb) ... Unpacking replacement libapt-pkg4.12:amd64 ... Setting up libapt-pkg4.12:amd64 (0.9.14.1ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace gpgv 1.4.15-1.1ubuntu1 (using .../gpgv_1.4.15-1.1ubuntu2_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.15-1.1ubuntu2) ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace gnupg 1.4.15-1.1ubuntu1 (using .../gnupg_1.4.15-1.1ubuntu2_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.15-1.1ubuntu2) ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace apt 0.9.13.1~ubuntu1 (using .../apt_0.9.14.1ubuntu1_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.9.14.1ubuntu1) ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace bsdutils 1:2.20.1-5.1ubuntu10 (using .../bsdutils_1%3a2.20.1-5.1ubuntu11_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.20.1-5.1ubuntu11) ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libuuid1:amd64 2.20.1-5.1ubuntu10 (using .../libuuid1_2.20.1-5.1ubuntu11_amd64.deb) ... Unpacking replacement libuuid1:amd64 ... Setting up libuuid1:amd64 (2.20.1-5.1ubuntu11) ... Processing triggers for libc-bin ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libblkid1:amd64 2.20.1-5.1ubuntu10 (using .../libblkid1_2.20.1-5.1ubuntu11_amd64.deb) ... Unpacking replacement libblkid1:amd64 ... Setting up libblkid1:amd64 (2.20.1-5.1ubuntu11) ... Processing triggers for libc-bin ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libcomerr2:amd64 1.42.8-1ubuntu1 (using .../libcomerr2_1.42.8-1ubuntu3_amd64.deb) ... Unpacking replacement libcomerr2:amd64 ... Setting up libcomerr2:amd64 (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libmount1:amd64 2.20.1-5.1ubuntu10 (using .../libmount1_2.20.1-5.1ubuntu11_amd64.deb) ... Unpacking replacement libmount1:amd64 ... Setting up libmount1:amd64 (2.20.1-5.1ubuntu11) ... Processing triggers for libc-bin ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libss2:amd64 1.42.8-1ubuntu1 (using .../libss2_1.42.8-1ubuntu3_amd64.deb) ... Unpacking replacement libss2:amd64 ... Setting up libss2:amd64 (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libustr-1.0-1:amd64 1.0.4-3ubuntu1 (using .../libustr-1.0-1_1.0.4-3ubuntu2_amd64.deb) ... Unpacking replacement libustr-1.0-1:amd64 ... Setting up libustr-1.0-1:amd64 (1.0.4-3ubuntu2) ... Processing triggers for libc-bin ... (Reading database ... 11983 files and directories currently installed.) Preparing to replace libgcrypt11:amd64 1.5.3-2ubuntu1 (using .../libgcrypt11_1.5.3-2ubuntu4_amd64.deb) ... Unpacking replacement libgcrypt11:amd64 ... Preparing to replace liblockfile-bin 1.09-6 (using .../liblockfile-bin_1.09-6ubuntu1_amd64.deb) ... Unpacking replacement liblockfile-bin ... Preparing to replace liblockfile1:amd64 1.09-6 (using .../liblockfile1_1.09-6ubuntu1_amd64.deb) ... Unpacking replacement liblockfile1:amd64 ... Preparing to replace libsqlite3-0:amd64 3.8.1-1ubuntu1 (using .../libsqlite3-0_3.8.1-1ubuntu3_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace plymouth 0.8.8-0ubuntu11 (using .../plymouth_0.8.8-0ubuntu12_amd64.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2:amd64 0.8.8-0ubuntu11 (using .../libplymouth2_0.8.8-0ubuntu12_amd64.deb) ... Unpacking replacement libplymouth2:amd64 ... 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Setting up libfakeroot:amd64 (1.20-3ubuntu1) ... Setting up fakeroot (1.20-3ubuntu1) ... Setting up perl-modules (5.18.1-5) ... Setting up perl (5.18.1-5) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5367325', 'amd64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'primer3_2.3.6-1.dsc'] Initiating build PACKAGEBUILD-5367325 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 x86_64 Automatic build of primer3_2.3.6-1 on tipua by sbuild/amd64 1.170.5 Build started at 20131219-1711 ****************************************************************************** primer3_2.3.6-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.6 MB of archives. After this operation, 43.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 amd64 2.1.0-4ubuntu1 [71.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 amd64 1:5.14-2ubuntu1 [183 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 amd64 1.0.1e-4ubuntu3 [826 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal amd64 3.3.3-4 [394 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib amd64 3.3.3-4 [2055 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal amd64 3.3.3-4 [1375 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 amd64 0.18.3.1-1ubuntu2 [6654 B] Get:9 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libglib2.0-0 amd64 2.39.2-0ubuntu1 [1041 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpipeline1 amd64 1.2.6-1 [23.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 amd64 2.9.1+dfsg1-3ubuntu3 [571 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main groff-base amd64 1.22.2-3 [719 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main man-db amd64 2.6.5-2 [710 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 amd64 0.6.8-2ubuntu1 [82.4 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 amd64 0.9.3-5ubuntu3 [271 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 amd64 3.3.3-4 [129 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal amd64 3.3.2-17 [26.6 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib amd64 3.3.2-17 [7864 B] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main python3 amd64 3.3.2-17 [9196 B] Get:21 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu3 [50.3 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main file amd64 1:5.14-2ubuntu1 [18.8 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base amd64 0.18.3.1-1ubuntu2 [48.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gettext amd64 0.18.3.1-1ubuntu2 [831 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu35 [20.1 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu35 [7300 B] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131127ubuntu1 [604 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.6 MB in 0s (11.4 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 11983 files and directories currently installed.) Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-4ubuntu1_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.14-2ubuntu1_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-4ubuntu3_amd64.deb) ... Selecting previously unselected package libpython3.3-minimal:amd64. Unpacking libpython3.3-minimal:amd64 (from .../libpython3.3-minimal_3.3.3-4_amd64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:amd64. Unpacking libpython3.3-stdlib:amd64 (from .../libpython3.3-stdlib_3.3.3-4_amd64.deb) ... Selecting previously unselected package python3.3-minimal. 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Setting up libexpat1:amd64 (2.1.0-4ubuntu1) ... Setting up libmagic1:amd64 (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:amd64 (1.0.1e-4ubuntu3) ... Setting up libpython3.3-minimal:amd64 (3.3.3-4) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:amd64 (3.3.3-4) ... Setting up python3.3-minimal (3.3.3-4) ... Setting up libasprintf0c2:amd64 (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:amd64 (2.39.2-0ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:amd64 (1.2.6-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:amd64 (0.6.8-2ubuntu1) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu3) ... Setting up python3.3 (3.3.3-4) ... Setting up python3-minimal (3.3.2-17) ... Setting up libpython3-stdlib:amd64 (3.3.2-17) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20131021-1ubuntu3) ... Setting up python3 (3.3.2-17) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu35) ... Setting up dh-apparmor (2.8.0-0ubuntu35) ... Setting up debhelper (9.20131127ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu1 make_3.81-8.2ubuntu3 dpkg-dev_1.17.1ubuntu1 gcc-4.8_4.8.2-10ubuntu1 g++-4.8_4.8.2-10ubuntu1 binutils_2.24-2ubuntu2 libstdc++-4.8-dev_4.8.2-10ubuntu1 libstdc++6_4.8.2-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Thu Dec 19 10:58:16 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./primer3_2.3.6-1.dsc dpkg-source: info: extracting primer3 in primer3-2.3.6 dpkg-source: info: unpacking primer3_2.3.6.orig.tar.gz dpkg-source: info: unpacking primer3_2.3.6-1.debian.tar.gz dpkg-source: info: applying hardening.patch dpkg-source: info: applying primer_thermodynamic_parameters_path_2_etc.patch dpkg-buildpackage: source package primer3 dpkg-buildpackage: source version 2.3.6-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build primer3-2.3.6 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean --sourcedirectory=src dh_testdir -O--sourcedirectory=src dh_auto_clean -O--sourcedirectory=src make[1]: Entering directory `/build/buildd/primer3-2.3.6/src' rm -f *.o primer3_core ntdpal ntthal oligotm long_seq_tm_test *~ libprimer3.a libdpal.a libthal.a liboligotm.a libprimer3.so.1.0.0 libdpal.a.so.1.0.0 libthal.a.so.1.0.0 liboligotm.so.1.2.0 example.for example.rev example.int core ../*~ cd ../test/; make clean make[2]: Entering directory `/build/buildd/primer3-2.3.6/test' echo; echo; echo 'CLEAN UP TEST DIRECTORIES'; echo; echo; CLEAN UP TEST DIRECTORIES rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -rf primer1_th_list_tmp/* rm -rf th-w-other-tasks_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *.tmp.err *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f pick_primer_list_and_file_flag_th_[1-4].for pick_primer_list_and_file_flag_th_[1-4].rev rm -f pick_primer_list_and_file_flag_th_[1-4].int rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg # valgrind output from thal_test.pl --valgrind rm -f oligotm.*.valg.* # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg.* # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg.* # valgrind output from thal_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file make[2]: Leaving directory `/build/buildd/primer3-2.3.6/test' make[1]: Leaving directory `/build/buildd/primer3-2.3.6/src' dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_testdir -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src make[1]: Entering directory `/build/buildd/primer3-2.3.6/src' g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 primer3_boulder_main.c g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o format_output.o format_output.c g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o read_boulder.o read_boulder.c g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o print_boulder.o print_boulder.c g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wno-deprecated -o libprimer3.o libprimer3.c g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o p3_seq_lib.o p3_seq_lib.c ar rv libprimer3.a libprimer3.o p3_seq_lib.o ar: creating libprimer3.a a - libprimer3.o a - p3_seq_lib.o ranlib libprimer3.a g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o dpal_primer.o dpal.c ar rv libdpal.a dpal_primer.o ar: creating libdpal.a a - dpal_primer.o ranlib libdpal.a g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -ffloat-store -o thal_primer.o thal.c ar rv libthal.a thal_primer.o ar: creating libthal.a a - thal_primer.o ranlib libthal.a gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -D_FORTIFY_SOURCE=2 -c -o oligotm.o oligotm.c ar rv liboligotm.a oligotm.o ar: creating liboligotm.a a - oligotm.o ranlib liboligotm.a g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o primer3_core primer3_boulder_main.o format_output.o read_boulder.o print_boulder.o libprimer3.a libdpal.a libthal.a liboligotm.a -lm g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -o ntdpal_main.o ntdpal_main.c ntdpal_main.c: In function 'int main(int, const char**)': ntdpal_main.c:49:9: warning: variable 'tmp_ret' set but not used [-Wunused-but-set-variable] int tmp_ret; ^ g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o dpal.o dpal.c g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o ntdpal ntdpal_main.o dpal.o g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o thal_main.o thal_main.c g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -ffloat-store -o thal.o thal.c g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o ntthal thal_main.o thal.o -lm g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o oligotm oligotm_main.c liboligotm.a -lm g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o long_seq_tm_test long_seq_tm_test_main.c oligotm.o -lm make[1]: Leaving directory `/build/buildd/primer3-2.3.6/src' debian/rules override_dh_auto_test make[1]: Entering directory `/build/buildd/primer3-2.3.6' dh_auto_test --sourcedirectory=test make[2]: Entering directory `/build/buildd/primer3-2.3.6/test' cd ../src; make make[3]: Entering directory `/build/buildd/primer3-2.3.6/src' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/primer3-2.3.6/src' perl cmdline_test.pl TESTING command line arguments Test 1... [OK] Test 2... [OK] Test 3... [OK] Test 4... [OK] Test 5... [OK] Passed all tests - [OK] perl oligotm_test.pl TESTING Tm CALCULATIONS Tm tests nr 1-47: OK echo; echo; echo 'TESTING ALIGNMENT CALCS'; echo; perl dpal_test.pl ; TESTING ALIGNMENT CALCS Error handling of too-long sequence...[OK] Default implementations + alignment...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 2...[OK] Force _dpal_generic...[OK] Force _dpal_long_nopath_generic 1...[OK] Force _dpal_long_nopath_generic 2...[OK] Force long maxgap1 functions 1...[OK] Force long maxgap1 functions 2...[OK] echo; echo; echo 'TESTING THERMODYNAMIC ALIGNMENT CALCS'; echo; perl thal_test.pl ; TESTING THERMODYNAMIC ALIGNMENT CALCS Error handling of too-long sequence... 1................................... [OK] Default implementations + alignment...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 2...[OK] echo; echo; echo 'TESTING primer3_core'; echo; perl p3test.pl TESTING primer3_core p3test.pl for primer3_core version 2.3.6 p3test.pl: testing ../src/primer3_core START, Thu Dec 19 17:11:49 2013 testing fatal errors... ./primer_global_err/bad_divalent_dntp_conc_1 Testing -output and -error flags on ../src/primer3_core -strict_tags ./primer_global_err/bad_divalent_dntp_conc_1.in -output ./primer_global_err/bad_divalent_dntp_conc_1.tmp -error ./primer_global_err/bad_divalent_dntp_conc_1.tmp2 ./primer_global_err/bad_divalent_dntp_conc_2 ./primer_global_err/bad_divalent_dntp_conc_3 ./primer_global_err/bad_divalent_dntp_conc_4 ./primer_global_err/bad_dna_conc ./primer_global_err/bad_first_base_index ./primer_global_err/bad_float_1 ./primer_global_err/bad_float_2 ./primer_global_err/bad_float_3 ./primer_global_err/bad_float_4 ./primer_global_err/bad_gc_1 ./primer_global_err/bad_gc_2 ./primer_global_err/bad_gc_3 ./primer_global_err/bad_gc_int_1 ./primer_global_err/bad_gc_int_2 ./primer_global_err/bad_gc_int_3 ./primer_global_err/bad_min_three_prime_distance ./primer_global_err/bad_num_ns ./primer_global_err/bad_num_ns_int ./primer_global_err/bad_product_sizes_1 ./primer_global_err/bad_product_sizes_2 ./primer_global_err/bad_product_sizes_3 ./primer_global_err/bad_product_sizes_4 ./primer_global_err/bad_salt_conc ./primer_global_err/bad_self_any ./primer_global_err/bad_self_any_int ./primer_global_err/bad_self_end ./primer_global_err/bad_self_end_int ./primer_global_err/bad_settings0 ./primer_global_err/bad_settings1 ./primer_global_err/bad_settings2 ./primer_global_err/bad_settings3 ./primer_global_err/bad_settings4 ./primer_global_err/bad_settings5 ./primer_global_err/bad_settings6 ./primer_global_err/empty_1 ./primer_global_err/empty_product_size ./primer_global_err/gc_clamp_min_size ./primer_global_err/incorrect_task ./primer_global_err/io_gc_content_obj_fn ./primer_global_err/io_obj_fn ./primer_global_err/junction_overlap_max_size ./primer_global_err/junction_overlap_min_size ./primer_global_err/max_min_tm ./primer_global_err/max_min_tm_int ./primer_global_err/max_opt_tm ./primer_global_err/max_opt_tm_int ./primer_global_err/MAX_PRIMER_LENGTH ./primer_global_err/max_size_limit_int ./primer_global_err/max_size_min_product ./primer_global_err/max_size_min_product_int ./primer_global_err/min_opt_tm ./primer_global_err/min_opt_tm_int ./primer_global_err/mishyb_obj_fn ./primer_global_err/mispr_obj_fn ./primer_global_err/must_match_length_0 ./primer_global_err/must_match_length_1 ./primer_global_err/must_match_length_10 ./primer_global_err/must_match_length_2 ./primer_global_err/must_match_length_3 ./primer_global_err/must_match_length_4 ./primer_global_err/must_match_length_5 ./primer_global_err/must_match_length_6 ./primer_global_err/must_match_length_7 ./primer_global_err/must_match_length_8 ./primer_global_err/must_match_length_9 ./primer_global_err/no_equal ./primer_global_err/no_terminal_equal ./primer_global_err/opt_max_size ./primer_global_err/opt_max_size_int ./primer_global_err/opt_min_size ./primer_global_err/opt_min_size_int ./primer_global_err/pair_mispr ./primer_global_err/pr_gc_content_obj_fn ./primer_global_err/product_size_obj_fn ./primer_global_err/product_tm_obj_fn ./primer_global_err/repeat_lib_err ./primer_global_err/repeat_lib_err1 ./primer_global_err/repeat_lib_err2 ./primer_global_err/repeat_lib_err3 ./primer_global_err/repeat_lib_err4 ./primer_global_err/repeat_lib_err5 ./primer_global_err/repeat_lib_err6 ./primer_global_err/repeat_lib_int_err ./primer_global_err/repeat_lib_int_err1 ./primer_global_err/repeat_lib_int_err2 ./primer_global_err/repeat_lib_int_err3 ./primer_global_err/repeat_lib_int_err4 ./primer_global_err/repeat_lib_int_err5 ./primer_global_err/repeat_lib_int_err6 ./primer_global_err/seq_quality1 ./primer_global_err/seq_quality2 ./primer_global_err/seq_quality3 ./primer_global_err/seq_quality4 ./primer_global_err/too_many_product_sizes ./primer_global_err/zero_min_size ./primer_global_err/zero_num_return [OK] primer_must_use_th...0s [OK] primer_task_th...0s [OK] primer_thal_args...1s [OK] primer_thal_max_seq_error...0s [OK] primer_first_base_index...0s [OK] primer_must_match...0s [OK] test_compl_error...0s [OK] test_left_to_right_of_right...0s [OK] dv_conc_vs_dntp_conc...0s [OK] primer_boundary...0s [OK] primer_boundary1...0s [OK] primer_boundary_formatted...0s [OK] primer_boundary1_formatted...1s [OK] primer3_v1_1_4_default_settings...0s [OK] primer3web_v0_4_0_default_settings...0s [OK] primer3web_v3_0_0_default_settings...1s [OK] primer3web_v4_0_0_default_settings...0s [OK] primer_internal...0s [OK] primer_internal1...0s [OK] primer_internal_formatted...0s [OK] primer_internal1_formatted...0s [OK] primer_ok_regions...0s [OK] primer_ok_regions_formatted...0s [OK] primer_ok_regions2...11s [OK] primer_tm_lc_masking...0s [OK] primer_tm_lc_masking_formatted...0s [OK] primer_start_codon...1s [OK] primer_task...0s [OK] primer_task_formatted...0s [OK] primer_renewed_tasks...0s [OK] primer_new_tasks...0s [OK] primer_new_tasks_formatted...0s [OK] primer_must_overlap_point...1s [OK] primer_overlap_junction...0s [OK] primer_all_settingsfiles...0s [OK] primer_high_tm_load_set...0s [OK] primer_high_gc_load_set...0s [OK] primer_gc_end...0s [OK] primer_check...0s [OK] primer_must_use...0s [OK] primer_must_use_formatted...0s [OK] primer_syntax...0s [OK] primer_end_pathology...0s [OK] primer_num_best...0s [OK] primer_quality_boundary...0s [OK] primer...2s [OK] primer_list_files...[OK] primer1...0s [OK] primer1_list_files...[OK] primer_mispriming...1s [OK] primer_mispriming_formatted...1s [OK] primer_mispriming_boundary1...0s [OK] primer_mispriming_boundary1_formatted...0s [OK] primer_mispriming_boundary2...0s [OK] primer_mispriming_boundary2_formatted...0s [OK] primer_mispriming_long_lib...0s [OK] primer_rat...0s [OK] primer_human...2s [OK] long_seq...0s [OK] primer_position_penalty...1s [OK] primer_position_penalty_formatted...1s [OK] p3-tmpl-mispriming...0s [OK] primer_three_prime_distance...0s [OK] primer_obj_fn...4s [OK] p3_3_prime_n...0s [OK] primer_mispriming_th...7s [OK] th-w-other-tasks...15s [OK] th-w-other-tasks_list_files...[OK] primer_new_tasks_th...13s [OK] primer_thermod_align...25s [OK] primer_thermod_align_formatted...25s [OK] primer1_th...75s [OK] primer1_th_list_files...[OK] primer_lib_amb_codes... NOTE: this test takes _much_ longer than the others (10 to 20 minutes or more). starting primer_lib_amb_codes at Thu Dec 19 17:14:58 2013...224s [OK] Tests in p3test.pl ran for 413 s (6.88333333333333 min) DONE Thu Dec 19 17:18:42 2013 Passed all tests - [OK] echo; echo; echo "Testing completed. You must check the test output for the string FAILED"; echo; echo; Testing completed. You must check the test output for the string FAILED make[2]: Leaving directory `/build/buildd/primer3-2.3.6/test' make[1]: Leaving directory `/build/buildd/primer3-2.3.6' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src dh_install -a -O--sourcedirectory=src dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: primer3 dh_strip debug symbol extraction: packages to act on: primer3 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `primer3-dbgsym' in `../primer3-dbgsym_2.3.6-1_amd64.ddeb'. dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 118 pkgstriptranslations: processing primer3 (in debian/primer3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/primer3/DEBIAN/control, package primer3, directory debian/primer3 pkgstripfiles: Truncating usr/share/doc/primer3/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package primer3 took 0 s dpkg-deb: warning: 'debian/primer3/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `primer3' in `../primer3_2.3.6-1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../primer3_2.3.6-1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build primer3-2.3.6 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131219-1718 Publishing debug debs. chroot-autobuild/build/buildd/primer3_2.3.6-1_amd64.deb: new debian package, version 2.0. size 168900 bytes: control archive= 1424 bytes. 1387 bytes, 34 lines conffiles 943 bytes, 19 lines control 973 bytes, 15 lines md5sums Package: primer3 Version: 2.3.6-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 673 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Suggests: ncbi-epcr Enhances: emboss Section: science Priority: optional Homepage: http://primer3.sourceforge.net Description: Tool to design flanking oligo nucleotides for DNA amplification Primer3 picks primers for Polymerase Chain Reactions (PCRs), considering as criteria oligonucleotide melting temperature, size, GC content and primer-dimer possibilities, PCR product size, positional constraints within the source sequence, and miscellaneous other constraints. All of these criteria are user-specifiable as constraints, and some are specifiable as terms in an objective function that characterizes an optimal primer pair. chroot-autobuild/build/buildd/primer3_2.3.6-1_amd64.deb: drwxr-xr-x root/root 0 2013-12-19 17:18 ./ drwxr-xr-x root/root 0 2013-12-19 17:18 ./etc/ drwxr-xr-x root/root 0 2013-10-21 07:51 ./etc/primer3_config/ -rw-r--r-- root/root 128 2013-10-21 07:49 ./etc/primer3_config/triloop.ds -rw-r--r-- root/root 890 2013-10-21 07:49 ./etc/primer3_config/tstack.dh -rw-r--r-- root/root 1152 2013-10-21 07:49 ./etc/primer3_config/tstack_tm_inf.ds -rw-r--r-- root/root 441 2013-10-21 07:49 ./etc/primer3_config/loops.dh -rw-r--r-- root/root 548 2013-10-21 07:49 ./etc/primer3_config/dangle.ds -rw-r--r-- root/root 373 2013-10-21 07:49 ./etc/primer3_config/dangle.dh -rw-r--r-- root/root 950 2013-10-21 07:49 ./etc/primer3_config/tstack2.dh -rw-r--r-- root/root 192 2013-10-21 07:49 ./etc/primer3_config/triloop.dh -rw-r--r-- root/root 1184 2013-10-21 07:49 ./etc/primer3_config/tstack2.ds -rw-r--r-- root/root 692 2013-10-21 07:49 ./etc/primer3_config/loops.ds -rw-r--r-- root/root 1145 2013-10-21 07:49 ./etc/primer3_config/stackmm.dh -rw-r--r-- root/root 1103 2013-10-21 07:49 ./etc/primer3_config/stackmm.ds -rw-r--r-- root/root 913 2013-10-21 07:49 ./etc/primer3_config/tetraloop.dh -rw-r--r-- root/root 1057 2013-10-21 07:49 ./etc/primer3_config/stack.dh -rw-r--r-- root/root 1056 2013-10-21 07:49 ./etc/primer3_config/stack.ds -rw-r--r-- root/root 824 2013-10-21 07:49 ./etc/primer3_config/tetraloop.ds drwxr-xr-x root/root 0 2013-10-21 07:51 ./etc/primer3_config/interpretations/ -rw-r--r-- root/root 2135 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_tm_inf_i.dh -rw-r--r-- root/root 873 2013-10-21 07:49 ./etc/primer3_config/interpretations/tetraloop_i.ds -rw-r--r-- root/root 160 2013-10-21 07:49 ./etc/primer3_config/interpretations/triloop_i.ds -rw-r--r-- root/root 815 2013-10-21 07:49 ./etc/primer3_config/interpretations/tetraloop_i.dh -rw-r--r-- root/root 2667 2013-10-21 07:49 ./etc/primer3_config/interpretations/stack_i.dh -rw-r--r-- root/root 2720 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack2_i.ds -rw-r--r-- root/root 699 2013-10-21 07:49 ./etc/primer3_config/interpretations/loops_i.ds -rw-r--r-- root/root 2597 2013-10-21 07:49 ./etc/primer3_config/interpretations/stack_i.ds -rw-r--r-- root/root 1856 2013-10-21 07:49 ./etc/primer3_config/interpretations/loops_i.dh -rw-r--r-- root/root 194 2013-10-21 07:49 ./etc/primer3_config/interpretations/triloop_i.dh -rw-r--r-- root/root 2494 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_tm_inf_i.ds -rw-r--r-- root/root 2486 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack2_i.dh -rw-r--r-- root/root 2757 2013-10-21 07:49 ./etc/primer3_config/interpretations/stackmm_i_mm.dh -rw-r--r-- root/root 2643 2013-10-21 07:49 ./etc/primer3_config/interpretations/stackmm_i_mm.ds -rw-r--r-- root/root 1017 2013-10-21 07:49 ./etc/primer3_config/interpretations/dangle_i.ds -rw-r--r-- root/root 2463 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_i.ds -rw-r--r-- root/root 994 2013-10-21 07:49 ./etc/primer3_config/interpretations/dangle_i.dh -rw-r--r-- root/root 2135 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_i.dh drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/ drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/bin/ -rwxr-xr-x root/root 248456 2013-12-19 17:18 ./usr/bin/primer3_core -rwxr-xr-x root/root 72056 2013-12-19 17:18 ./usr/bin/ntthal -rwxr-xr-x root/root 18632 2013-12-19 17:18 ./usr/bin/oligotm -rwxr-xr-x root/root 22856 2013-12-19 17:18 ./usr/bin/ntdpal drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/share/ drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/share/man/ drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/share/man/man1/ -rw-r--r-- root/root 1858 2013-12-19 17:18 ./usr/share/man/man1/ntdpal.1.gz -rw-r--r-- root/root 1710 2013-12-19 17:18 ./usr/share/man/man1/oligotm.1.gz -rw-r--r-- root/root 824 2013-12-19 17:18 ./usr/share/man/man1/ntthal.1.gz -rw-r--r-- root/root 1674 2013-12-19 17:18 ./usr/share/man/man1/primer3_core.1.gz drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/share/doc/primer3/ -rw-r--r-- root/root 2356 2013-12-19 17:18 ./usr/share/doc/primer3/changelog.Debian.gz -rw-r--r-- root/root 2413 2013-10-26 16:28 ./usr/share/doc/primer3/copyright -rw-r--r-- root/root 202896 2013-12-19 17:11 ./usr/share/doc/primer3/primer3_manual.htm -rw-r--r-- root/root 8757 2013-12-19 17:11 ./usr/share/doc/primer3/release_notes.txt.gz drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/share/doc/primer3/examples/ -rw-r--r-- root/root 480 2013-10-21 07:49 ./usr/share/doc/primer3/examples/example -rw-r--r-- root/root 306 2013-09-12 08:58 ./usr/share/doc/primer3/README.test drwxr-xr-x root/root 0 2013-12-19 17:18 ./usr/share/doc-base/ -rw-r--r-- root/root 660 2013-09-12 08:58 ./usr/share/doc-base/primer3-manual primer3_2.3.6-1_amd64.changes: Format: 1.8 Date: Thu, 19 Dec 2013 09:58:19 +0100 Source: primer3 Binary: primer3 Architecture: amd64 Version: 2.3.6-1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Andreas Tille Description: primer3 - Tool to design flanking oligo nucleotides for DNA amplification Closes: 702693 716151 716213 Changes: primer3 (2.3.6-1) unstable; urgency=low . [ Charles Plessy ] * New upstream release. * Install configuration files in /etc (first step to fix bug 702693). * Normalised debian/control with config-model-edit. * Use canonical VCS URLs. . [ Andreas Tille ] * Fix watch file * replace cdbs by dh * debian/patches/hardening.patch: Propagate hardening options * Standards-Version: 3.9.5 (no changes needed) * debian/patches/primer_thermodynamic_parameters_path_2_etc.patch: Make sure config files will be searched for in /etc/primer3_config/ instead of /opt/primer3_config/ Closes: #702693 * Verified that new upstream Closes: #716151, #716213 * New executable: ntthal (including manpage) * Removed *.xml variants of manpages to reduce redundancy Checksums-Sha1: d666d43a8b09d3ae4275bbd930e78f93fef5a042 168900 primer3_2.3.6-1_amd64.deb Checksums-Sha256: 1d718529dddd3bc769c95ea1bf1bd3eb2777086795f044a92d8131444322a118 168900 primer3_2.3.6-1_amd64.deb Files: c31191fb322156c8b655bb931764319a 168900 science optional primer3_2.3.6-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131219-1718 Build needed 00:07:20, 28716k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5367325'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5367325/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5367325'] Unmounting chroot for build PACKAGEBUILD-5367325... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5367325'] Removing build PACKAGEBUILD-5367325