RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux z13-007 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x Buildd toolchain package versions: launchpad-buildd_136 python-lpbuildd_136 sbuild_0.66.0-5ubuntu1 dpkg-dev_1.18.3ubuntu1 python-debian_0.1.27ubuntu1. Syncing the system clock with the buildd NTP service... 5 Dec 01:38:07 ntpdate[47051]: adjust time server 10.211.37.1 offset -0.000233 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8380449', '/home/buildd/filecache-default/8808aeb45a9438550e8005f67e1dc6d720c06f47'] Unpacking chroot for build PACKAGEBUILD-8380449 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8380449'] Mounting chroot for build PACKAGEBUILD-8380449 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8380449', 'deb http://ftpmaster.internal/ubuntu xenial main universe'] Overriding sources.list in build-PACKAGEBUILD-8380449 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8380449', 's390x'] Updating debian chroot for build PACKAGEBUILD-8380449 Ign http://archive-team.internal xenial InRelease Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Ign http://archive-team.internal xenial Release.gpg Hit http://archive-team.internal xenial Release Ign http://archive-team.internal xenial/main s390x Packages/DiffIndex Hit http://archive-team.internal xenial/main Translation-en Hit http://archive-team.internal xenial/main s390x Packages Get:2 http://ftpmaster.internal xenial/main s390x Packages [1285 kB] Get:3 http://ftpmaster.internal xenial/universe s390x Packages [4943 kB] Get:4 http://ftpmaster.internal xenial/main Translation-en [848 kB] Get:5 http://ftpmaster.internal xenial/universe Translation-en [4728 kB] Fetched 12.0 MB in 6s (1964 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8380449', 's390x', 'xenial', '-c', 'chroot:autobuild', '--arch=s390x', '--dist=xenial', '--purge=never', '--nolog', 'primer3_2.3.6-1.dsc'] Initiating build PACKAGEBUILD-8380449 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on z13-007.buildd +==============================================================================+ | primer3 2.3.6-1 (s390x) 05 Dec 2015 01:38 | +==============================================================================+ Package: primer3 Version: 2.3.6-1 Source Version: 2.3.6-1 Distribution: xenial Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/primer3-cnN2vx/primer3-2.3.6' with '<>' I: NOTICE: Log filtering will replace 'build/primer3-cnN2vx' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8380449/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- primer3_2.3.6-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-KO6DVb/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9) Filtered Build-Depends: debhelper (>= 9) dpkg-deb: building package 'sbuild-build-depends-primer3-dummy' in '/<>/resolver-KUPTXf/apt_archive/sbuild-build-depends-primer3-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install primer3 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf sbuild-build-depends-primer3-dummy 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0 MB/14.0 MB of archives. After this operation, 57.5 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libasprintf0v5 groff-base file libfile-stripnondeterminism-perl dh-strip-nondeterminism sbuild-build-depends-primer3-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libasprintf0v5 s390x 0.19.4-1ubuntu3 [6638 B] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main groff-base s390x 1.22.3-4 [1199 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main bsdmainutils s390x 9.0.6ubuntu1 [178 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main libpipeline1 s390x 1.4.1-1 [24.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main man-db s390x 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libmagic1 s390x 1:5.25-2ubuntu1 [214 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main file s390x 1:5.25-2ubuntu1 [21.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main gettext-base s390x 0.19.4-1ubuntu3 [48.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libglib2.0-0 s390x 2.47.3-3 [1041 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libicu55 s390x 55.1-6ubuntu1 [7478 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libxml2 s390x 2.9.2+zdfsg1-4ubuntu1 [640 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libcroco3 s390x 0.6.9-1 [77.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libunistring0 s390x 0.9.3-5.2ubuntu1 [262 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gettext s390x 0.19.4-1ubuntu3 [838 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main po-debconf all 1.0.18 [234 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libarchive-zip-perl all 1.53-1 [87.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main dh-strip-nondeterminism all 0.014-1 [5596 B] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main debhelper all 9.20151126ubuntu1 [741 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.0 MB in 4s (2936 kB/s) Selecting previously unselected package libasprintf0v5:s390x. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_s390x.deb ... Unpacking libasprintf0v5:s390x (0.19.4-1ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-4_s390x.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_s390x.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../libpipeline1_1.4.1-1_s390x.deb ... Unpacking libpipeline1:s390x (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_s390x.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_s390x.deb ... Unpacking libmagic1:s390x (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_s390x.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.4-1ubuntu3_s390x.deb ... Unpacking gettext-base (0.19.4-1ubuntu3) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../libglib2.0-0_2.47.3-3_s390x.deb ... Unpacking libglib2.0-0:s390x (2.47.3-3) ... Selecting previously unselected package libicu55:s390x. Preparing to unpack .../libicu55_55.1-6ubuntu1_s390x.deb ... Unpacking libicu55:s390x (55.1-6ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.2+zdfsg1-4ubuntu1) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../libcroco3_0.6.9-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.9-1) ... Selecting previously unselected package libunistring0:s390x. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_s390x.deb ... Unpacking libunistring0:s390x (0.9.3-5.2ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.4-1ubuntu3_s390x.deb ... Unpacking gettext (0.19.4-1ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.53-1_all.deb ... Unpacking libarchive-zip-perl (1.53-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ... Unpacking dh-strip-nondeterminism (0.014-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20151126ubuntu1_all.deb ... Unpacking debhelper (9.20151126ubuntu1) ... Selecting previously unselected package sbuild-build-depends-primer3-dummy. Preparing to unpack .../sbuild-build-depends-primer3-dummy.deb ... Unpacking sbuild-build-depends-primer3-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libasprintf0v5:s390x (0.19.4-1ubuntu3) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:s390x (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmagic1:s390x (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up libglib2.0-0:s390x (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:s390x (55.1-6ubuntu1) ... Setting up libxml2:s390x (2.9.2+zdfsg1-4ubuntu1) ... Setting up libcroco3:s390x (0.6.9-1) ... Setting up libunistring0:s390x (0.9.3-5.2ubuntu1) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up sbuild-build-depends-primer3-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.3.0-0-generic s390x (s390x) Toolchain package versions: binutils_2.25.90.20151125-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-27ubuntu1 gcc-5_5.2.1-27ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 linux-libc-dev_4.3.0-1.10 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151125-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.2.1-27ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-16ubuntu2 g++-5_5.2.1-27ubuntu1 gcc_4:5.2.1-16ubuntu2 gcc-5_5.2.1-27ubuntu1 gcc-5-base_5.2.1-27ubuntu1 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.21-2 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu8 libapt-pkg4.16_1.0.10.2ubuntu1 libarchive-zip-perl_1.53-1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-27ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-27ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.3ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.2.1-27ubuntu1 libgcc1_1:5.2.1-27ubuntu1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.2.1-27ubuntu1 libgpg-error0_1.20-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl15_0.15-3 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2d-0ubuntu2 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 libsystemd0_228-2ubuntu1 libtasn1-6_4.7-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libudev1_228-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu1 linux-libc-dev_4.3.0-1.10 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu5 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu2 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_123 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-primer3-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu1 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Dec 19 10:58:16 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./primer3_2.3.6-1.dsc dpkg-source: info: extracting primer3 in primer3-2.3.6 dpkg-source: info: unpacking primer3_2.3.6.orig.tar.gz dpkg-source: info: unpacking primer3_2.3.6-1.debian.tar.gz dpkg-source: info: applying hardening.patch dpkg-source: info: applying primer_thermodynamic_parameters_path_2_etc.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: source package primer3 dpkg-buildpackage: source version 2.3.6-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build primer3-2.3.6 dpkg-buildpackage: host architecture s390x fakeroot debian/rules clean dh clean --sourcedirectory=src dh_testdir -O--sourcedirectory=src dh_auto_clean -O--sourcedirectory=src make -j1 clean make[1]: Entering directory '/<>/src' rm -f *.o primer3_core ntdpal ntthal oligotm long_seq_tm_test *~ libprimer3.a libdpal.a libthal.a liboligotm.a libprimer3.so.1.0.0 libdpal.a.so.1.0.0 libthal.a.so.1.0.0 liboligotm.so.1.2.0 example.for example.rev example.int core ../*~ cd ../test/; make clean make[2]: Entering directory '/<>/test' echo; echo; echo 'CLEAN UP TEST DIRECTORIES'; echo; echo; CLEAN UP TEST DIRECTORIES rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -rf primer1_th_list_tmp/* rm -rf th-w-other-tasks_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *.tmp.err *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f pick_primer_list_and_file_flag_th_[1-4].for pick_primer_list_and_file_flag_th_[1-4].rev rm -f pick_primer_list_and_file_flag_th_[1-4].int rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg # valgrind output from thal_test.pl --valgrind rm -f oligotm.*.valg.* # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg.* # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg.* # valgrind output from thal_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file make[2]: Leaving directory '/<>/test' make[1]: Leaving directory '/<>/src' dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_testdir -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src make -j1 make[1]: Entering directory '/<>/src' g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 primer3_boulder_main.c g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o format_output.o format_output.c g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o read_boulder.o read_boulder.c g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o print_boulder.o print_boulder.c g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wno-deprecated -o libprimer3.o libprimer3.c g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o p3_seq_lib.o p3_seq_lib.c ar rv libprimer3.a libprimer3.o p3_seq_lib.o ar: creating libprimer3.a a - libprimer3.o a - p3_seq_lib.o ranlib libprimer3.a g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o dpal_primer.o dpal.c ar rv libdpal.a dpal_primer.o ar: creating libdpal.a a - dpal_primer.o ranlib libdpal.a g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -ffloat-store -o thal_primer.o thal.c ar rv libthal.a thal_primer.o ar: creating libthal.a a - thal_primer.o ranlib libthal.a gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -D_FORTIFY_SOURCE=2 -c -o oligotm.o oligotm.c ar rv liboligotm.a oligotm.o ar: creating liboligotm.a a - oligotm.o ranlib liboligotm.a g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o primer3_core primer3_boulder_main.o format_output.o read_boulder.o print_boulder.o libprimer3.a libdpal.a libthal.a liboligotm.a -lm g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -o ntdpal_main.o ntdpal_main.c ntdpal_main.c: In function 'int main(int, const char**)': ntdpal_main.c:49:9: warning: variable 'tmp_ret' set but not used [-Wunused-but-set-variable] int tmp_ret; ^ g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o dpal.o dpal.c g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o ntdpal ntdpal_main.o dpal.o g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o thal_main.o thal_main.c g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -ffloat-store -o thal.o thal.c g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o ntthal thal_main.o thal.o -lm g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -o oligotm oligotm_main.c liboligotm.a -lm g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o long_seq_tm_test long_seq_tm_test_main.c oligotm.o -lm make[1]: Leaving directory '/<>/src' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test --sourcedirectory=test make -j1 test make[2]: Entering directory '/<>/test' cd ../src; make make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/src' perl cmdline_test.pl TESTING command line arguments Test 1... [OK] Test 2... [OK] Test 3... [OK] Test 4... [OK] Test 5... [OK] Passed all tests - [OK] perl oligotm_test.pl TESTING Tm CALCULATIONS Tm tests nr 1-47: OK echo; echo; echo 'TESTING ALIGNMENT CALCS'; echo; perl dpal_test.pl ; TESTING ALIGNMENT CALCS Error handling of too-long sequence...[OK] Default implementations + alignment...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 2...[OK] Force _dpal_generic...[OK] Force _dpal_long_nopath_generic 1...[OK] Force _dpal_long_nopath_generic 2...[OK] Force long maxgap1 functions 1...[OK] Force long maxgap1 functions 2...[OK] echo; echo; echo 'TESTING THERMODYNAMIC ALIGNMENT CALCS'; echo; perl thal_test.pl ; TESTING THERMODYNAMIC ALIGNMENT CALCS Error handling of too-long sequence... 1................................... [OK] Default implementations + alignment...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 2...[OK] echo; echo; echo 'TESTING primer3_core'; echo; perl p3test.pl TESTING primer3_core p3test.pl for primer3_core version 2.3.6 p3test.pl: testing ../src/primer3_core START, Sat Dec 5 01:38:44 2015 testing fatal errors... ./primer_global_err/bad_divalent_dntp_conc_1 Testing -output and -error flags on ../src/primer3_core -strict_tags ./primer_global_err/bad_divalent_dntp_conc_1.in -output ./primer_global_err/bad_divalent_dntp_conc_1.tmp -error ./primer_global_err/bad_divalent_dntp_conc_1.tmp2 ./primer_global_err/bad_divalent_dntp_conc_2 ./primer_global_err/bad_divalent_dntp_conc_3 ./primer_global_err/bad_divalent_dntp_conc_4 ./primer_global_err/bad_dna_conc ./primer_global_err/bad_first_base_index ./primer_global_err/bad_float_1 ./primer_global_err/bad_float_2 ./primer_global_err/bad_float_3 ./primer_global_err/bad_float_4 ./primer_global_err/bad_gc_1 ./primer_global_err/bad_gc_2 ./primer_global_err/bad_gc_3 ./primer_global_err/bad_gc_int_1 ./primer_global_err/bad_gc_int_2 ./primer_global_err/bad_gc_int_3 ./primer_global_err/bad_min_three_prime_distance ./primer_global_err/bad_num_ns ./primer_global_err/bad_num_ns_int ./primer_global_err/bad_product_sizes_1 ./primer_global_err/bad_product_sizes_2 ./primer_global_err/bad_product_sizes_3 ./primer_global_err/bad_product_sizes_4 ./primer_global_err/bad_salt_conc ./primer_global_err/bad_self_any ./primer_global_err/bad_self_any_int ./primer_global_err/bad_self_end ./primer_global_err/bad_self_end_int ./primer_global_err/bad_settings0 ./primer_global_err/bad_settings1 ./primer_global_err/bad_settings2 ./primer_global_err/bad_settings3 ./primer_global_err/bad_settings4 ./primer_global_err/bad_settings5 ./primer_global_err/bad_settings6 ./primer_global_err/empty_1 ./primer_global_err/empty_product_size ./primer_global_err/gc_clamp_min_size ./primer_global_err/incorrect_task ./primer_global_err/io_gc_content_obj_fn ./primer_global_err/io_obj_fn ./primer_global_err/junction_overlap_max_size ./primer_global_err/junction_overlap_min_size ./primer_global_err/max_min_tm ./primer_global_err/max_min_tm_int ./primer_global_err/max_opt_tm ./primer_global_err/max_opt_tm_int ./primer_global_err/MAX_PRIMER_LENGTH ./primer_global_err/max_size_limit_int ./primer_global_err/max_size_min_product ./primer_global_err/max_size_min_product_int ./primer_global_err/min_opt_tm ./primer_global_err/min_opt_tm_int ./primer_global_err/mishyb_obj_fn ./primer_global_err/mispr_obj_fn ./primer_global_err/must_match_length_0 ./primer_global_err/must_match_length_1 ./primer_global_err/must_match_length_10 ./primer_global_err/must_match_length_2 ./primer_global_err/must_match_length_3 ./primer_global_err/must_match_length_4 ./primer_global_err/must_match_length_5 ./primer_global_err/must_match_length_6 ./primer_global_err/must_match_length_7 ./primer_global_err/must_match_length_8 ./primer_global_err/must_match_length_9 ./primer_global_err/no_equal ./primer_global_err/no_terminal_equal ./primer_global_err/opt_max_size ./primer_global_err/opt_max_size_int ./primer_global_err/opt_min_size ./primer_global_err/opt_min_size_int ./primer_global_err/pair_mispr ./primer_global_err/pr_gc_content_obj_fn ./primer_global_err/product_size_obj_fn ./primer_global_err/product_tm_obj_fn ./primer_global_err/repeat_lib_err ./primer_global_err/repeat_lib_err1 ./primer_global_err/repeat_lib_err2 ./primer_global_err/repeat_lib_err3 ./primer_global_err/repeat_lib_err4 ./primer_global_err/repeat_lib_err5 ./primer_global_err/repeat_lib_err6 ./primer_global_err/repeat_lib_int_err ./primer_global_err/repeat_lib_int_err1 ./primer_global_err/repeat_lib_int_err2 ./primer_global_err/repeat_lib_int_err3 ./primer_global_err/repeat_lib_int_err4 ./primer_global_err/repeat_lib_int_err5 ./primer_global_err/repeat_lib_int_err6 ./primer_global_err/seq_quality1 ./primer_global_err/seq_quality2 ./primer_global_err/seq_quality3 ./primer_global_err/seq_quality4 ./primer_global_err/too_many_product_sizes ./primer_global_err/zero_min_size ./primer_global_err/zero_num_return [OK] primer_must_use_th...0s [OK] primer_task_th...1s [OK] primer_thal_args...0s [OK] primer_thal_max_seq_error...1s [OK] primer_first_base_index...0s [OK] primer_must_match...0s [OK] test_compl_error...0s [OK] test_left_to_right_of_right...0s [OK] dv_conc_vs_dntp_conc...0s [OK] primer_boundary...0s [OK] primer_boundary1...0s [OK] primer_boundary_formatted...0s [OK] primer_boundary1_formatted...0s [OK] primer3_v1_1_4_default_settings...0s [OK] primer3web_v0_4_0_default_settings...0s [OK] primer3web_v3_0_0_default_settings...1s [OK] primer3web_v4_0_0_default_settings...0s [OK] primer_internal...0s [OK] primer_internal1...0s [OK] primer_internal_formatted...0s [OK] primer_internal1_formatted...0s [OK] primer_ok_regions...0s [OK] primer_ok_regions_formatted...0s [OK] primer_ok_regions2...8s [OK] primer_tm_lc_masking...0s [OK] primer_tm_lc_masking_formatted...0s [OK] primer_start_codon...0s [OK] primer_task...0s [OK] primer_task_formatted...0s [OK] primer_renewed_tasks...0s [OK] primer_new_tasks...1s [OK] primer_new_tasks_formatted...0s [OK] primer_must_overlap_point...0s [OK] primer_overlap_junction...0s [OK] primer_all_settingsfiles...0s [OK] primer_high_tm_load_set...0s [OK] primer_high_gc_load_set...0s [OK] primer_gc_end...0s [OK] primer_check...0s [OK] primer_must_use...0s [OK] primer_must_use_formatted...0s [OK] primer_syntax...0s [OK] primer_end_pathology...0s [OK] primer_num_best...1s [OK] primer_quality_boundary...0s [OK] primer...1s [OK] primer_list_files...[OK] primer1...0s [OK] primer1_list_files...[OK] primer_mispriming...0s [OK] primer_mispriming_formatted...1s [OK] primer_mispriming_boundary1...0s [OK] primer_mispriming_boundary1_formatted...0s [OK] primer_mispriming_boundary2...0s [OK] primer_mispriming_boundary2_formatted...0s [OK] primer_mispriming_long_lib...0s [OK] primer_rat...1s [OK] primer_human...1s [OK] long_seq...0s [OK] primer_position_penalty...1s [OK] primer_position_penalty_formatted...0s [OK] p3-tmpl-mispriming...0s [OK] primer_three_prime_distance...0s [OK] primer_obj_fn...3s [OK] p3_3_prime_n...0s [OK] primer_mispriming_th...7s [OK] th-w-other-tasks...13s [OK] th-w-other-tasks_list_files...[OK] primer_new_tasks_th...14s [OK] primer_thermod_align...25s [OK] primer_thermod_align_formatted...26s [OK] primer1_th...81s [OK] primer1_th_list_files...[OK] primer_lib_amb_codes... NOTE: this test takes _much_ longer than the others (10 to 20 minutes or more). starting primer_lib_amb_codes at Sat Dec 5 01:41:51 2015...118s [OK] Tests in p3test.pl ran for 305 s (5.08333333333333 min) DONE Sat Dec 5 01:43:49 2015 Passed all tests - [OK] echo; echo; echo "Testing completed. You must check the test output for the string FAILED"; echo; echo; Testing completed. You must check the test output for the string FAILED make[2]: Leaving directory '/<>/test' make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src dh_install -a -O--sourcedirectory=src dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform s390x: primer3 dh_strip debug symbol extraction: packages to act on: primer3 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform s390x: primer3 dh_gencontrol debug symbol wrapper: packages to act on: primer3 dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package primer3 (pkgdir debian/primer3, ddeb package dir debian/primer3-dbgsym) dh_gencontrol debug symbol wrapper: building primer3-dbgsym_2.3.6-1_s390x.ddeb dpkg-deb: building package 'primer3-dbgsym' in '../primer3-dbgsym_2.3.6-1_s390x.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile primer3-dbgsym_2.3.6-1_s390x.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 123 pkgstriptranslations: processing primer3 (in debian/primer3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/primer3/DEBIAN/control, package primer3, directory debian/primer3 pkgstripfiles: Truncating usr/share/doc/primer3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package primer3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'primer3' in '../primer3_2.3.6-1_s390x.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../primer3_2.3.6-1_s390x.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build primer3-2.3.6 dpkg-buildpackage: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20151205-0143 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ primer3_2.3.6-1_s390x.changes: ------------------------------ Format: 1.8 Date: Thu, 19 Dec 2013 09:58:19 +0100 Source: primer3 Binary: primer3 Architecture: s390x Version: 2.3.6-1 Distribution: xenial Urgency: low Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: primer3 - Tool to design flanking oligo nucleotides for DNA amplification Closes: 702693 716151 716213 Changes: primer3 (2.3.6-1) unstable; urgency=low . [ Charles Plessy ] * New upstream release. * Install configuration files in /etc (first step to fix bug 702693). * Normalised debian/control with config-model-edit. * Use canonical VCS URLs. . [ Andreas Tille ] * Fix watch file * replace cdbs by dh * debian/patches/hardening.patch: Propagate hardening options * Standards-Version: 3.9.5 (no changes needed) * debian/patches/primer_thermodynamic_parameters_path_2_etc.patch: Make sure config files will be searched for in /etc/primer3_config/ instead of /opt/primer3_config/ Closes: #702693 * Verified that new upstream Closes: #716151, #716213 * New executable: ntthal (including manpage) * Removed *.xml variants of manpages to reduce redundancy Checksums-Sha1: b3e67d337fd5a9bbea5f20a2ac258df101c69289 200162 primer3-dbgsym_2.3.6-1_s390x.ddeb 15c9f447421b15f1dcf5d0f8cfdcd83f011a0449 158132 primer3_2.3.6-1_s390x.deb Checksums-Sha256: 5bd6a14bc818729a36d27d39e9048a6a37b624c1686c347b0a2be2ec8dffbba8 200162 primer3-dbgsym_2.3.6-1_s390x.ddeb 065498137cd1d7c282430b754e59e009d0af00589d3212d4d9c002720abf6f84 158132 primer3_2.3.6-1_s390x.deb Files: 2753627cb2e0ef83d1d78f6b8a10ba21 200162 science extra primer3-dbgsym_2.3.6-1_s390x.ddeb 430069ee0c3f536558944ffc100f6192 158132 science optional primer3_2.3.6-1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ primer3_2.3.6-1_s390x.deb ------------------------- new debian package, version 2.0. size 158132 bytes: control archive=1420 bytes. 1387 bytes, 34 lines conffiles 943 bytes, 19 lines control 973 bytes, 15 lines md5sums Package: primer3 Version: 2.3.6-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 653 Depends: libc6 (>= 2.11), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Suggests: ncbi-epcr Enhances: emboss Section: science Priority: optional Homepage: http://primer3.sourceforge.net Description: Tool to design flanking oligo nucleotides for DNA amplification Primer3 picks primers for Polymerase Chain Reactions (PCRs), considering as criteria oligonucleotide melting temperature, size, GC content and primer-dimer possibilities, PCR product size, positional constraints within the source sequence, and miscellaneous other constraints. All of these criteria are user-specifiable as constraints, and some are specifiable as terms in an objective function that characterizes an optimal primer pair. drwxr-xr-x root/root 0 2015-12-05 01:43 ./ drwxr-xr-x root/root 0 2015-12-05 01:43 ./etc/ drwxr-xr-x root/root 0 2013-10-21 07:51 ./etc/primer3_config/ -rw-r--r-- root/root 373 2013-10-21 07:49 ./etc/primer3_config/dangle.dh -rw-r--r-- root/root 548 2013-10-21 07:49 ./etc/primer3_config/dangle.ds drwxr-xr-x root/root 0 2013-10-21 07:51 ./etc/primer3_config/interpretations/ -rw-r--r-- root/root 994 2013-10-21 07:49 ./etc/primer3_config/interpretations/dangle_i.dh -rw-r--r-- root/root 1017 2013-10-21 07:49 ./etc/primer3_config/interpretations/dangle_i.ds -rw-r--r-- root/root 1856 2013-10-21 07:49 ./etc/primer3_config/interpretations/loops_i.dh -rw-r--r-- root/root 699 2013-10-21 07:49 ./etc/primer3_config/interpretations/loops_i.ds -rw-r--r-- root/root 2667 2013-10-21 07:49 ./etc/primer3_config/interpretations/stack_i.dh -rw-r--r-- root/root 2597 2013-10-21 07:49 ./etc/primer3_config/interpretations/stack_i.ds -rw-r--r-- root/root 2757 2013-10-21 07:49 ./etc/primer3_config/interpretations/stackmm_i_mm.dh -rw-r--r-- root/root 2643 2013-10-21 07:49 ./etc/primer3_config/interpretations/stackmm_i_mm.ds -rw-r--r-- root/root 815 2013-10-21 07:49 ./etc/primer3_config/interpretations/tetraloop_i.dh -rw-r--r-- root/root 873 2013-10-21 07:49 ./etc/primer3_config/interpretations/tetraloop_i.ds -rw-r--r-- root/root 194 2013-10-21 07:49 ./etc/primer3_config/interpretations/triloop_i.dh -rw-r--r-- root/root 160 2013-10-21 07:49 ./etc/primer3_config/interpretations/triloop_i.ds -rw-r--r-- root/root 2486 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack2_i.dh -rw-r--r-- root/root 2720 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack2_i.ds -rw-r--r-- root/root 2135 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_i.dh -rw-r--r-- root/root 2463 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_i.ds -rw-r--r-- root/root 2135 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_tm_inf_i.dh -rw-r--r-- root/root 2494 2013-10-21 07:49 ./etc/primer3_config/interpretations/tstack_tm_inf_i.ds -rw-r--r-- root/root 441 2013-10-21 07:49 ./etc/primer3_config/loops.dh -rw-r--r-- root/root 692 2013-10-21 07:49 ./etc/primer3_config/loops.ds -rw-r--r-- root/root 1057 2013-10-21 07:49 ./etc/primer3_config/stack.dh -rw-r--r-- root/root 1056 2013-10-21 07:49 ./etc/primer3_config/stack.ds -rw-r--r-- root/root 1145 2013-10-21 07:49 ./etc/primer3_config/stackmm.dh -rw-r--r-- root/root 1103 2013-10-21 07:49 ./etc/primer3_config/stackmm.ds -rw-r--r-- root/root 913 2013-10-21 07:49 ./etc/primer3_config/tetraloop.dh -rw-r--r-- root/root 824 2013-10-21 07:49 ./etc/primer3_config/tetraloop.ds -rw-r--r-- root/root 192 2013-10-21 07:49 ./etc/primer3_config/triloop.dh -rw-r--r-- root/root 128 2013-10-21 07:49 ./etc/primer3_config/triloop.ds -rw-r--r-- root/root 890 2013-10-21 07:49 ./etc/primer3_config/tstack.dh -rw-r--r-- root/root 950 2013-10-21 07:49 ./etc/primer3_config/tstack2.dh -rw-r--r-- root/root 1184 2013-10-21 07:49 ./etc/primer3_config/tstack2.ds -rw-r--r-- root/root 1152 2013-10-21 07:49 ./etc/primer3_config/tstack_tm_inf.ds drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/ drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/bin/ -rwxr-xr-x root/root 26832 2015-12-05 01:43 ./usr/bin/ntdpal -rwxr-xr-x root/root 67968 2015-12-05 01:43 ./usr/bin/ntthal -rwxr-xr-x root/root 18632 2015-12-05 01:43 ./usr/bin/oligotm -rwxr-xr-x root/root 244448 2015-12-05 01:43 ./usr/bin/primer3_core drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/share/ drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/share/doc-base/ -rw-r--r-- root/root 660 2013-09-12 08:58 ./usr/share/doc-base/primer3-manual drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/share/doc/primer3/ -rw-r--r-- root/root 306 2013-09-12 08:58 ./usr/share/doc/primer3/README.test -rw-r--r-- root/root 2356 2015-12-05 01:43 ./usr/share/doc/primer3/changelog.Debian.gz -rw-r--r-- root/root 2413 2013-10-26 16:28 ./usr/share/doc/primer3/copyright drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/share/doc/primer3/examples/ -rw-r--r-- root/root 480 2013-10-21 07:49 ./usr/share/doc/primer3/examples/example -rw-r--r-- root/root 202896 2015-12-05 01:38 ./usr/share/doc/primer3/primer3_manual.htm -rw-r--r-- root/root 8757 2015-12-05 01:38 ./usr/share/doc/primer3/release_notes.txt.gz drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/share/man/ drwxr-xr-x root/root 0 2015-12-05 01:43 ./usr/share/man/man1/ -rw-r--r-- root/root 1858 2015-12-05 01:43 ./usr/share/man/man1/ntdpal.1.gz -rw-r--r-- root/root 824 2015-12-05 01:43 ./usr/share/man/man1/ntthal.1.gz -rw-r--r-- root/root 1710 2015-12-05 01:43 ./usr/share/man/man1/oligotm.1.gz -rw-r--r-- root/root 1674 2015-12-05 01:43 ./usr/share/man/man1/primer3_core.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 29012 Build-Time: 322 Distribution: xenial Host Architecture: s390x Install-Time: 11 Job: primer3_2.3.6-1.dsc Machine Architecture: s390x Package: primer3 Package-Time: 334 Source-Version: 2.3.6-1 Space: 29012 Status: successful Version: 2.3.6-1 -------------------------------------------------------------------------------- Finished at 20151205-0143 Build needed 00:05:34, 29012k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8380449'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8380449/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8380449'] Unmounting chroot for build PACKAGEBUILD-8380449... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8380449'] Removing build PACKAGEBUILD-8380449