Ubuntu
probalign package

probalign 1.4-2 source package in Ubuntu

Changelog

probalign (1.4-2) unstable; urgency=low

  * Standards-Version: 3.9.2 (no changes needed)
  * Debhelper 8 (control+compat)
  * debian/patches/fix-gcc-4.6.patch
    Closes: #624979
 -- Ubuntu Archive Auto-Sync <email address hidden>   Thu,  05 May 2011 12:03:38 +0000

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Uploaded by:
Ubuntu Archive Auto-Sync
Uploaded to:
Oneiric
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Precise release universe science

Downloads

File Size SHA-256 Checksum
probalign_1.4.orig.tar.gz 29.4 KiB b221a27c5cbc3e5c707b0514c71301806074a2bf54047b57bd2d40497b663c29
probalign_1.4-2.debian.tar.gz 2.8 KiB 729de8be2a0606cfaad4a6c4011de6cceb0b31f7e07176248fbea4412122f302
probalign_1.4-2.dsc 1.3 KiB 9740756c58c2916d7994aae8071856181a514af931381afee275785ed481421f

Available diffs

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Binary packages built by this source

probalign: multiple sequence alignment using partition function posterior probabilities

 Probalign uses partition function posterior probability estimates to
 compute maximum expected accuracy multiple sequence alignments. It
 performs statistically significantly better than the leading alignment
 programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0,
 HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on
 datasets containing N/C terminal extensions and on datasets with long
 and heterogeneous length sequences. On heteregeneous length datasets
 containing repeats Probalign alignment accuracy is 10% and 15% higher
 than the other three methods when standard deviation of length is at
 least 300 and 400.