https://launchpad.net/ubuntu/+source/probcons/1.12-13/+build/20306540 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-004 4.15.0-123-generic #126-Ubuntu SMP Wed Oct 21 09:34:46 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 16 Nov 17:27:41 ntpdate[1707]: adjust time server 10.211.37.1 offset -0.000766 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20306540 --image-type chroot /home/buildd/filecache-default/9aaab3d1c3367126bc5b66d2474faf9141147628 Creating target for build PACKAGEBUILD-20306540 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20306540 Starting target for build PACKAGEBUILD-20306540 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20306540 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20306540 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20306540 Updating target for build PACKAGEBUILD-20306540 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x Packages [1322 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe s390x Packages [12.1 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5332 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x Packages [162 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [75.2 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x Packages [1665 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [596 kB] Fetched 22.4 MB in 5s (4889 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.32 perl-modules-5.32 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libidn2-0 libip4tc2 libitm1 libmpc3 libncurses6 libncursesw6 libnpth0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 linux-libc-dev ncurses-base ncurses-bin perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 74 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 218 MB of archives. After this operation, 816 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main s390x libcrypt-dev s390x 1:4.4.17-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute/main s390x libcrypt1 s390x 1:4.4.17-1ubuntu1 [84.3 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6-dev s390x 2.32-0ubuntu5 [1744 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-dev-bin s390x 2.32-0ubuntu5 [29.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x linux-libc-dev s390x 5.8.0-26.27 [1165 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-dev s390x 1.2.6-3 [190 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc3 s390x 1.2.6-3 [75.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x libcc1-0 s390x 10.2.0-17ubuntu1 [39.3 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main s390x gcc-10-base s390x 10.2.0-17ubuntu1 [19.6 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcc-s1 s390x 10.2.0-17ubuntu1 [30.4 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x libgomp1 s390x 10.2.0-17ubuntu1 [115 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x libitm1 s390x 10.2.0-17ubuntu1 [28.6 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main s390x libatomic1 s390x 10.2.0-17ubuntu1 [8380 B] Get:15 http://ftpmaster.internal/ubuntu hirsute/main s390x libasan6 s390x 10.2.0-17ubuntu1 [351 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main s390x libubsan1 s390x 10.2.0-17ubuntu1 [155 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x g++-10 s390x 10.2.0-17ubuntu1 [63.1 MB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x libstdc++-10-dev s390x 10.2.0-17ubuntu1 [1735 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcc-10-dev s390x 10.2.0-17ubuntu1 [779 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main s390x gcc-10 s390x 10.2.0-17ubuntu1 [63.9 MB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main s390x cpp-10 s390x 10.2.0-17ubuntu1 [56.7 MB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main s390x libstdc++6 s390x 10.2.0-17ubuntu1 [519 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libmpc3 s390x 1.2.0-1 [43.6 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf-nobfd0 s390x 2.35.1-2ubuntu1 [50.4 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf0 s390x 2.35.1-2ubuntu1 [49.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libbinutils s390x 2.35.1-2ubuntu1 [338 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-common s390x 2.35.1-2ubuntu1 [212 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils s390x 2.35.1-2ubuntu1 [3344 B] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-s390x-linux-gnu s390x 2.35.1-2ubuntu1 [1691 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6 s390x 2.32-0ubuntu5 [2340 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x base-files s390x 11ubuntu16 [60.4 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x bash s390x 5.1~rc2-1ubuntu1 [761 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x coreutils s390x 8.32-4ubuntu1 [1457 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x dpkg s390x 1.20.5ubuntu3 [1177 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main s390x dash s390x 0.5.11+git20200708+dd9ef66-2 [111 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main s390x grep s390x 3.6-1 [161 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncursesw6 s390x 6.2+20200918-1 [136 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncurses6 s390x 6.2+20200918-1 [106 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtinfo6 s390x 6.2+20200918-1 [92.5 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-bin s390x 6.2+20200918-1 [176 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-modules-5.32 all 5.32.0-5 [2754 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libperl5.32 s390x 5.32.0-5 [3945 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl s390x 5.32.0-5 [225 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-base s390x 5.32.0-5 [1575 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libdebconfclient0 s390x 0.255ubuntu1 [6064 B] Get:46 http://ftpmaster.internal/ubuntu hirsute/main s390x base-passwd s390x 3.5.48 [48.5 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-bin s390x 2.32-0ubuntu5 [586 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-base all 6.2+20200918-1 [18.7 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main s390x sysvinit-utils s390x 2.96-5ubuntu1 [20.6 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcrypt20 s390x 1.8.7-2ubuntu1 [393 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd-sysv s390x 246.6-2ubuntu1 [10.3 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd-timesyncd s390x 246.6-2ubuntu1 [27.2 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libapparmor1 s390x 3.0.0-0ubuntu4 [36.2 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:55 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit1 s390x 1:2.8.5-3ubuntu2 [38.1 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main s390x libcap2 s390x 1:2.44-1 [18.3 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main s390x libcryptsetup12 s390x 2:2.3.4-1ubuntu1 [184 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main s390x libidn2-0 s390x 2.3.0-3 [51.5 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main s390x libip4tc2 s390x 1.8.5-3ubuntu3 [20.0 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main s390x libseccomp2 s390x 2.4.3-1ubuntu5 [56.3 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd s390x 246.6-2ubuntu1 [4293 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main s390x libsystemd0 s390x 246.6-2ubuntu1 [292 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main s390x libudev1 s390x 246.6-2ubuntu1 [73.2 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main s390x libapt-pkg6.0 s390x 2.1.11 [848 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main s390x apt s390x 2.1.11 [1285 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main s390x libselinux1 s390x 3.1-2build1 [75.3 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage-common all 3.1-1build1 [10.1 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage1 s390x 3.1-1build1 [88.2 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x readline-common all 8.1~rc2-2 [54.1 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libreadline8 s390x 8.1~rc2-2 [143 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main s390x tzdata all 2020d-1ubuntu1 [293 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libfakeroot s390x 1.25.3-1 [27.5 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x fakeroot s390x 1.25.3-1 [62.7 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main s390x libnpth0 s390x 1.6-3 [8048 B] debconf: delaying package configuration, since apt-utils is not installed 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Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 16 17:28:26 UTC 2020. Universal Time is now: Mon Nov 16 17:28:26 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1) ... Setting up libncurses6:s390x (6.2+20200918-1) ... Setting up libmpc3:s390x (1.2.0-1) ... Setting up libatomic1:s390x (10.2.0-17ubuntu1) ... Setting up libncursesw6:s390x (6.2+20200918-1) ... Setting up libperl5.32:s390x (5.32.0-5) ... Setting up libubsan1:s390x (10.2.0-17ubuntu1) ... Setting up libcrypt-dev:s390x (1:4.4.17-1ubuntu1) ... Setting up libcryptsetup12:s390x (2:2.3.4-1ubuntu1) ... Setting up libbinutils:s390x (2.35.1-2ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu5) ... Setting up readline-common (8.1~rc2-2) ... Setting up libcc1-0:s390x (10.2.0-17ubuntu1) ... Setting up cpp-10 (10.2.0-17ubuntu1) ... Setting up libitm1:s390x (10.2.0-17ubuntu1) ... Setting up libctf0:s390x (2.35.1-2ubuntu1) ... Setting up libtirpc3:s390x (1.2.6-3) ... Setting up binutils-s390x-linux-gnu (2.35.1-2ubuntu1) ... Setting up libgcc-10-dev:s390x (10.2.0-17ubuntu1) ... Setting up libreadline8:s390x (8.1~rc2-2) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up perl (5.32.0-5) ... Setting up libtirpc-dev:s390x (1.2.6-3) ... Setting up gcc-10 (10.2.0-17ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up libc6-dev:s390x (2.32-0ubuntu5) ... Setting up libstdc++-10-dev:s390x (10.2.0-17ubuntu1) ... Setting up g++-10 (10.2.0-17ubuntu1) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up systemd (246.6-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-timesyncd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20306540 s390x hirsute-proposed -c chroot:build-PACKAGEBUILD-20306540 --arch=s390x --dist=hirsute-proposed --nolog probcons_1.12-13.dsc Initiating build PACKAGEBUILD-20306540 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-123-generic #126-Ubuntu SMP Wed Oct 21 09:34:46 UTC 2020 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-004.buildd +==============================================================================+ | probcons 1.12-13 (s390x) Mon, 16 Nov 2020 17:28:27 +0000 | +==============================================================================+ Package: probcons Version: 1.12-13 Source Version: 1.12-13 Distribution: hirsute-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20306540/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- probcons_1.12-13.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/probcons-oKaBLR/probcons-1.12' with '<>' I: NOTICE: Log filtering will replace 'build/probcons-oKaBLR' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-aijJUt/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-aijJUt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-aijJUt/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-aijJUt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-aijJUt/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-aijJUt/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-aijJUt/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13) Filtered Build-Depends: debhelper-compat (= 13) dpkg-deb: building package 'sbuild-build-depends-probcons-dummy' in '/<>/resolver-aijJUt/apt_archive/sbuild-build-depends-probcons-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-probcons-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-aijJUt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-aijJUt/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-aijJUt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-aijJUt/apt_archive ./ Sources [491 B] Get:5 copy:/<>/resolver-aijJUt/apt_archive ./ Packages [573 B] Fetched 2027 B in 0s (191 kB/s) Reading package lists... Reading package lists... Install probcons build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-probcons-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 17.1 MB of archives. After this operation, 69.2 MB of additional disk space will be used. Get:1 copy:/<>/resolver-aijJUt/apt_archive ./ sbuild-build-depends-probcons-dummy 0.invalid.0 [860 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main s390x bsdextrautils s390x 2.36-3ubuntu1 [77.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main s390x groff-base s390x 1.22.4-5 [812 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x libpipeline1 s390x 1.5.3-1 [28.7 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main s390x man-db s390x 2.9.3-2 [1106 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic-mgc s390x 1:5.38-5 [219 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic1 s390x 1:5.38-5 [72.9 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x file s390x 1:5.38-5 [23.1 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libelf1 s390x 0.182-1 [48.2 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libglib2.0-0 s390x 2.66.2-1 [1321 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x libicu67 s390x 67.1-4 [8473 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libxml2 s390x 2.9.10+dfsg-6.2 [645 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main s390x libsigsegv2 s390x 2.12-2build1 [13.7 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main s390x m4 s390x 1.4.18-4 [196 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x autoconf all 2.69-11.1 [321 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x automake all 1:1.16.2-4ubuntu1 [548 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main s390x libtool all 2.4.6-14 [161 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:26 http://ftpmaster.internal/ubuntu hirsute/main s390x libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:28 http://ftpmaster.internal/ubuntu hirsute/main s390x dwz s390x 0.13-5 [146 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x po-debconf all 1.0.21 [233 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main s390x debhelper all 13.2.1ubuntu1 [879 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.1 MB in 1s (26.1 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../01-libuchardet0_0.0.7-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_s390x.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.3-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_s390x.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.38-5_s390x.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up sbuild-build-depends-probcons-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-123-generic s390x (s390x) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.0-17ubuntu1 gcc-10_10.2.0-17ubuntu1 libc6-dev_2.32-0ubuntu5 libstdc++-10-dev_10.2.0-17ubuntu1 libstdc++6_10.2.0-17ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc2-1ubuntu1 binutils_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 binutils-s390x-linux-gnu_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 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libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.1-2ubuntu1 libblkid1_2.36-3ubuntu1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu5 libc-dev-bin_2.32-0ubuntu5 libc6_2.32-0ubuntu5 libc6-dev_2.32-0ubuntu5 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcc1-0_10.2.0-17ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.1-2ubuntu1 libctf0_2.35.1-2ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu3 libelf1_0.182-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-17ubuntu1 libgcc-s1_10.2.0-17ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-17ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libip4tc2_1.8.5-3ubuntu3 libisl22_0.22.1-1 libitm1_10.2.0-17ubuntu1 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libreadline8_8.1~rc2-2 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-17ubuntu1 libstdc++6_10.2.0-17ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-2ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-17ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-2ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-26.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.1~rc2-2 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-probcons-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-2ubuntu1 systemd-sysv_246.6-2ubuntu1 systemd-timesyncd_246.6-2ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 16 09:17:20 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./probcons_1.12-13.dsc dpkg-source: info: extracting probcons in /<> dpkg-source: info: unpacking probcons_1.12.orig.tar.gz dpkg-source: info: unpacking probcons_1.12-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_add-RNA-in-Makefile.patch dpkg-source: info: applying 11-Rename-programs-in-Makefile.patch dpkg-source: info: applying fix-gcc-4.5-headers dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20306540 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20306540 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20306540 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package probcons dpkg-buildpackage: info: source version 1.12-13 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f probcons probcons-RNA pc-compare pc-project pc-makegnuplot make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean probcons probcons-RNA pc-project pc-compare pc-makegnuplot Main-RNA.cc Defaults-RNA.h make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' cp Main.cc Main-RNA.cc sed -i s/Defaults.h/Defaults-RNA.h/ Main-RNA.cc cp debian/Defaults-RNA.h Defaults-RNA.h dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>' g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -funroll-loops -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -lm -o probcons Main.cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=1 -DVERSION="1.12" -funroll-loops -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -lm -o probcons-RNA Main-RNA.cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -funroll-loops -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o pc-compare CompareToRef.cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -funroll-loops -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o pc-project ProjectPairwise.cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from ProjectPairwise.cc:9: Sequence.h: In member function ‘Sequence* Sequence::Clone() const’: Sequence.h:293:21: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ProjectPairwise.cc:8: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = char]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ In file included from MultiSequence.h:18, from CompareToRef.cc:9: Sequence.h: In member function ‘Sequence* Sequence::Clone() const’: Sequence.h:293:21: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from CompareToRef.cc:8: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = char]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ In file included from MultiSequence.h:18, from Main-RNA.cc:8: Sequence.h: In member function ‘Sequence* Sequence::Clone() const’: Sequence.h:293:21: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main-RNA.cc:7: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = char]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ In file included from MultiSequence.h:18, from Main.cc:8: Sequence.h: In member function ‘Sequence* Sequence::Clone() const’: Sequence.h:293:21: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:7: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = char]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ In file included from Main-RNA.cc:11: ProbabilisticModel.h: In member function ‘void ProbabilisticModel::ComputeNewParameters(Sequence*, Sequence*, const VF&, const VF&, VF&, VF&, VF&, VVF&, VF&, bool) const’: ProbabilisticModel.h:493:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 493 | if (enableTrainEmissions && i != 1 || j != 1){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from Main.cc:11: ProbabilisticModel.h: In member function ‘void ProbabilisticModel::ComputeNewParameters(Sequence*, Sequence*, const VF&, const VF&, VF&, VF&, VF&, VVF&, VF&, bool) const’: ProbabilisticModel.h:493:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 493 | if (enableTrainEmissions && i != 1 || j != 1){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ProbabilisticModel.h: In member function ‘VF* ProbabilisticModel::BuildPosterior(MultiSequence*, MultiSequence*, const SafeVector >&, float) const’: ProbabilisticModel.h:1027:18: warning: variable ‘postPtr’ set but not used [-Wunused-but-set-variable] 1027 | VF::iterator postPtr = posterior.begin(); | ^~~~~~~ ProbabilisticModel.h: In member function ‘VF* ProbabilisticModel::BuildPosterior(MultiSequence*, MultiSequence*, const SafeVector >&, float) const’: ProbabilisticModel.h:1027:18: warning: variable ‘postPtr’ set but not used [-Wunused-but-set-variable] 1027 | VF::iterator postPtr = posterior.begin(); | ^~~~~~~ Main.cc: In function ‘void PrintParameters(const char*, const VF&, const VF&, const VF&, const VVF&, const VF&, const char*)’: Main.cc:282:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 282 | for (int i = 0; i < NumMatrixTypes; i++) fprintf (file, "%.10f ", initDistrib[i]); fprintf (file, "\n"); | ^~~ Main.cc:282:88: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 282 | for (int i = 0; i < NumMatrixTypes; i++) fprintf (file, "%.10f ", initDistrib[i]); fprintf (file, "\n"); | ^~~~~~~ Main.cc:283:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 283 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapOpen[i]); fprintf (file, "\n"); | ^~~ Main.cc:283:87: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 283 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapOpen[i]); fprintf (file, "\n"); | ^~~~~~~ Main.cc:284:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 284 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapExtend[i]); fprintf (file, "\n"); | ^~~ Main.cc:284:89: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 284 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapExtend[i]); fprintf (file, "\n"); | ^~~~~~~ Main.cc: In function ‘MultiSequence* DoAlign(MultiSequence*, const ProbabilisticModel&, VF&, VF&, VF&, VVF&, VF&)’: Main.cc:400:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 400 | if (enableVerbose) | ^~ Main.cc:403:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 403 | delete alignment.first; | ^~~~~~ Main-RNA.cc: In function ‘void PrintParameters(const char*, const VF&, const VF&, const VF&, const VVF&, const VF&, const char*)’: Main-RNA.cc:282:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 282 | for (int i = 0; i < NumMatrixTypes; i++) fprintf (file, "%.10f ", initDistrib[i]); fprintf (file, "\n"); | ^~~ Main-RNA.cc:282:88: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 282 | for (int i = 0; i < NumMatrixTypes; i++) fprintf (file, "%.10f ", initDistrib[i]); fprintf (file, "\n"); | ^~~~~~~ Main-RNA.cc:283:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 283 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapOpen[i]); fprintf (file, "\n"); | ^~~ Main-RNA.cc:283:87: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 283 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapOpen[i]); fprintf (file, "\n"); | ^~~~~~~ Main-RNA.cc:284:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 284 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapExtend[i]); fprintf (file, "\n"); | ^~~ Main-RNA.cc:284:89: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 284 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapExtend[i]); fprintf (file, "\n"); | ^~~~~~~ Main-RNA.cc: In function ‘MultiSequence* DoAlign(MultiSequence*, const ProbabilisticModel&, VF&, VF&, VF&, VVF&, VF&)’: Main-RNA.cc:400:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 400 | if (enableVerbose) | ^~ Main-RNA.cc:403:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 403 | delete alignment.first; | ^~~~~~ Main-RNA.cc: In function ‘void ReadParameters()’: Main-RNA.cc:893:40: warning: implicitly-declared ‘SafeVector >& SafeVector >::operator=(const SafeVector >&)’ is deprecated [-Wdeprecated-copy] 893 | emitPairs = VVF (256, VF (256, 1e-10)); | ^ In file included from Main-RNA.cc:7: SafeVector.h:29:3: note: because ‘SafeVector >’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = SafeVector]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ Main-RNA.cc:894:29: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 894 | emitSingle = VF (256, 1e-5); | ^ In file included from Main-RNA.cc:7: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = float]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ Main.cc: In function ‘void ReadParameters()’: Main.cc:893:40: warning: implicitly-declared ‘SafeVector >& SafeVector >::operator=(const SafeVector >&)’ is deprecated [-Wdeprecated-copy] 893 | emitPairs = VVF (256, VF (256, 1e-10)); | ^ In file included from Main.cc:7: SafeVector.h:29:3: note: because ‘SafeVector >’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = SafeVector]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ Main.cc:894:29: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 894 | emitSingle = VF (256, 1e-5); | ^ In file included from Main.cc:7: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = float]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -funroll-loops -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o pc-makegnuplot MakeGnuPlot.cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>' rm -rf /<>/debian/probcons-extra/usr/share/doc/probcons-extra dh_link -p probcons-extra usr/share/doc/probcons usr/share/doc/probcons-extra make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing probcons (in debian/probcons); do_strip: , oemstrip: pkgstriptranslations: processing probcons-extra-dbgsym (in debian/.debhelper/probcons-extra/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing probcons-dbgsym (in debian/.debhelper/probcons/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing probcons-extra (in debian/probcons-extra); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/probcons/DEBIAN/control, package probcons, directory debian/probcons pkgstripfiles: Truncating usr/share/doc/probcons/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/probcons/dbgsym-root/DEBIAN/control, package probcons-dbgsym, directory debian/.debhelper/probcons/dbgsym-root dpkg-deb: building package 'probcons-dbgsym' in 'debian/.debhelper/scratch-space/build-probcons/probcons-dbgsym_1.12-13_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package probcons ... pkgstripfiles: No PNG files. dpkg-deb: building package 'probcons' in '../probcons_1.12-13_s390x.deb'. pkgstripfiles: processing control file: debian/probcons-extra/DEBIAN/control, package probcons-extra, directory debian/probcons-extra pkgstripfiles: Running PNG optimization (using 4 cpus) for package probcons-extra ... pkgstripfiles: No PNG files. dpkg-deb: building package 'probcons-extra' in '../probcons-extra_1.12-13_s390x.deb'. Renaming probcons-dbgsym_1.12-13_s390x.deb to probcons-dbgsym_1.12-13_s390x.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/probcons-extra/dbgsym-root/DEBIAN/control, package probcons-extra-dbgsym, directory debian/.debhelper/probcons-extra/dbgsym-root dpkg-deb: building package 'probcons-extra-dbgsym' in 'debian/.debhelper/scratch-space/build-probcons-extra/probcons-extra-dbgsym_1.12-13_s390x.deb'. Renaming probcons-extra-dbgsym_1.12-13_s390x.deb to probcons-extra-dbgsym_1.12-13_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../probcons_1.12-13_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-16T17:28:58Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ probcons_1.12-13_s390x.changes: ------------------------------- Format: 1.8 Date: Mon, 16 Nov 2020 09:45:58 +0100 Source: probcons Binary: probcons probcons-extra Architecture: s390x Version: 1.12-13 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: probcons - PROBabilistic CONSistency-based multiple sequence alignment probcons-extra - Extra programs from the probcons package Changes: probcons (1.12-13) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Update watch file format version to 4. * Set field Upstream-Contact in debian/copyright. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). 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6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605516358" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ probcons-extra_1.12-13_s390x.deb -------------------------------- new Debian package, version 2.0. size 38972 bytes: control archive=976 bytes. 919 bytes, 21 lines control 374 bytes, 6 lines md5sums Package: probcons-extra Source: probcons Version: 1.12-13 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 129 Depends: probcons (= 1.12-13), libc6 (>= 2.7), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Suggests: gnuplot-nox | gnuplot-x11 Section: science Priority: optional Homepage: http://probcons.stanford.edu/ Description: Extra programs from the probcons package Contains the convert, project and makgnuplot programs from the probcons package, which have been renamed to pc-compare, pc-project and pc-makegnuplot respectively to avoid collisions with other program names. These programs are mostly useful for testing purposes and are not required for the normal usage of Probcons. . Probcons is a tool for generating multiple alignments of protein sequences. drwxr-xr-x root/root 0 2020-11-16 08:45 ./ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/bin/ -rwxr-xr-x root/root 63664 2020-11-16 08:45 ./usr/bin/pc-compare -rwxr-xr-x root/root 10416 2020-11-16 08:45 ./usr/bin/pc-makegnuplot -rwxr-xr-x root/root 43192 2020-11-16 08:45 ./usr/bin/pc-project drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-16 08:45 ./usr/share/doc/probcons-extra -> probcons drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/man/man1/ -rw-r--r-- root/root 965 2020-11-16 08:45 ./usr/share/man/man1/pc-compare.1.gz -rw-r--r-- root/root 878 2020-11-16 08:45 ./usr/share/man/man1/pc-makegnuplot.1.gz -rw-r--r-- root/root 884 2020-11-16 08:45 ./usr/share/man/man1/pc-project.1.gz probcons_1.12-13_s390x.deb -------------------------- new Debian package, version 2.0. size 95940 bytes: control archive=1144 bytes. 1084 bytes, 21 lines control 603 bytes, 9 lines md5sums Package: probcons Version: 1.12-13 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 342 Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.0), libstdc++6 (>= 9) Suggests: probcons-extra Enhances: t-coffee Section: science Priority: optional Homepage: http://probcons.stanford.edu/ Description: PROBabilistic CONSistency-based multiple sequence alignment Tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. On the BAliBASE benchmark alignment database, alignments produced by PROBCONS show statistically significant improvement over current programs, containing an average of 7% more correctly aligned columns than those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W, and 14% more correctly aligned columns than those of DIALIGN. drwxr-xr-x root/root 0 2020-11-16 08:45 ./ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/bin/ -rwxr-xr-x root/root 167824 2020-11-16 08:45 ./usr/bin/probcons -rwxr-xr-x root/root 158120 2020-11-16 08:45 ./usr/bin/probcons-RNA drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/doc/probcons/ -rw-r--r-- root/root 749 2020-11-16 08:45 ./usr/share/doc/probcons/README.Debian -rw-r--r-- root/root 1764 2007-04-03 17:39 ./usr/share/doc/probcons/README.gz -rw-r--r-- root/root 1899 2020-11-16 08:45 ./usr/share/doc/probcons/changelog.Debian.gz -rw-r--r-- root/root 995 2020-11-16 08:45 ./usr/share/doc/probcons/copyright drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/doc/probcons/examples/ -rw-r--r-- root/root 2269 2020-11-16 08:45 ./usr/share/doc/probcons/examples/example.fa drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/man/man1/ -rw-r--r-- root/root 865 2020-11-16 08:45 ./usr/share/man/man1/probcons-RNA.1.gz -rw-r--r-- root/root 1801 2020-11-16 08:45 ./usr/share/man/man1/probcons.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 24 Distribution: hirsute-proposed Host Architecture: s390x Install-Time: 6 Job: probcons_1.12-13.dsc Machine Architecture: s390x Package: probcons Package-Time: 31 Source-Version: 1.12-13 Space: n/a Status: successful Version: 1.12-13 -------------------------------------------------------------------------------- Finished at 2020-11-16T17:28:58Z Build needed 00:00:31, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20306540 Scanning for processes to kill in build PACKAGEBUILD-20306540