RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-06 4.4.0-78-generic #99-Ubuntu SMP Thu Apr 27 15:29:09 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_144 python-lpbuildd_144 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 7 Jun 17:06:53 ntpdate[1760]: adjust time server 10.211.37.1 offset 0.000592 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12707054', '/home/buildd/filecache-default/7fe38ae672de2c40a7e6ba74a0e6690544a5bb48'] Unpacking chroot for build PACKAGEBUILD-12707054 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12707054'] Mounting chroot for build PACKAGEBUILD-12707054 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12707054', 'deb http://ftpmaster.internal/ubuntu artful main universe', 'deb http://ftpmaster.internal/ubuntu artful-security main universe', 'deb http://ftpmaster.internal/ubuntu artful-updates main universe', 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-12707054 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12707054', 'i386'] Updating debian chroot for build PACKAGEBUILD-12707054 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 Packages [1174 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [567 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe i386 Packages [8245 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4751 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main i386 Packages [85.7 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [41.2 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe i386 Packages [125 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [69.4 kB] Fetched 15.7 MB in 6s (2407 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-7-base The following packages will be upgraded: advancecomp apt apt-transport-https bash binutils bsdutils ca-certificates cpp-6 debianutils dmsetup dpkg dpkg-dev g++-6 gcc-6 gcc-6-base init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkmod2 libkrb5-26-heimdal libldap-2.4-2 libldap-common libmount1 libmpx2 libperl5.24 libquadmath0 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 systemd systemd-sysv util-linux 76 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 53.3 MB of archives. After this operation, 1312 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main i386 debianutils i386 4.8.1.1 [85.7 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main i386 bash i386 4.4-5ubuntu1 [622 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main i386 bsdutils i386 1:2.29-1ubuntu3 [57.9 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main i386 dpkg i386 1.18.24ubuntu1 [1164 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 login i386 1:4.2-3.2ubuntu2 [306 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main i386 util-linux i386 2.29-1ubuntu3 [952 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main i386 mount i386 2.29-1ubuntu3 [137 kB] Get:8 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libperl5.24 i386 5.24.1-3ubuntu1 [3097 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main i386 perl i386 5.24.1-3ubuntu1 [219 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main i386 perl-base i386 5.24.1-3ubuntu1 [1440 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/main i386 perl-modules-5.24 all 5.24.1-3ubuntu1 [2662 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/main i386 init-system-helpers all 1.48 [37.8 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main i386 gcc-7-base i386 7.1.0-6ubuntu2 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main i386 libgcc1 i386 1:7.1.0-6ubuntu2 [46.9 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main i386 libstdc++6 i386 7.1.0-6ubuntu2 [436 kB] Get:16 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libapt-pkg5.0 i386 1.4.6 [854 kB] Get:17 http://ftpmaster.internal/ubuntu artful-proposed/main i386 apt i386 1.4.6 [1130 kB] Get:18 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libapparmor1 i386 2.11.0-2ubuntu8 [31.2 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main i386 libaudit-common all 1:2.6.6-1ubuntu2 [4626 B] Get:20 http://ftpmaster.internal/ubuntu artful/main i386 libaudit1 i386 1:2.6.6-1ubuntu2 [38.7 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main i386 libselinux1 i386 2.6-3build1 [73.0 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main i386 libsemanage-common all 2.6-2build1 [6738 B] Get:23 http://ftpmaster.internal/ubuntu artful/main i386 libsemanage1 i386 2.6-2build1 [89.9 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main i386 passwd i386 1:4.2-3.2ubuntu2 [790 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main i386 libuuid1 i386 2.29-1ubuntu3 [15.8 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main i386 libblkid1 i386 2.29-1ubuntu3 [125 kB] Get:27 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libgcrypt20 i386 1.7.6-2 [373 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main i386 libkmod2 i386 24-1ubuntu1 [46.0 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main i386 libmount1 i386 2.29-1ubuntu3 [131 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main i386 systemd i386 233-6ubuntu3 [2488 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main i386 libsystemd0 i386 233-6ubuntu3 [228 kB] Get:32 http://ftpmaster.internal/ubuntu artful-proposed/main i386 init i386 1.48 [5806 B] Get:33 http://ftpmaster.internal/ubuntu artful/main i386 systemd-sysv i386 233-6ubuntu3 [13.0 kB] Get:34 http://ftpmaster.internal/ubuntu artful/main i386 libfdisk1 i386 2.29-1ubuntu3 [160 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main i386 libsmartcols1 i386 2.29-1ubuntu3 [76.1 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main i386 libudev1 i386 233-6ubuntu3 [60.2 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main i386 libdevmapper1.02.1 i386 2:1.02.137-2ubuntu2 [146 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main i386 dmsetup i386 2:1.02.137-2ubuntu2 [72.9 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main i386 libroken18-heimdal i386 7.1.0+dfsg-13 [44.4 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main i386 libasn1-8-heimdal i386 7.1.0+dfsg-13 [187 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main i386 libtasn1-6 i386 4.10-1.1 [38.5 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main i386 libgnutls30 i386 3.5.8-5ubuntu1 [693 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main i386 libheimbase1-heimdal i386 7.1.0+dfsg-13 [31.9 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main i386 libhcrypto4-heimdal i386 7.1.0+dfsg-13 [93.4 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main i386 libwind0-heimdal i386 7.1.0+dfsg-13 [48.6 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main i386 libhx509-5-heimdal i386 7.1.0+dfsg-13 [118 kB] Get:47 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libsqlite3-0 i386 3.16.2-4 [519 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main i386 libkrb5-26-heimdal i386 7.1.0+dfsg-13 [232 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main i386 libheimntlm0-heimdal i386 7.1.0+dfsg-13 [16.6 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main i386 libgssapi3-heimdal i386 7.1.0+dfsg-13 [108 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main i386 libldap-2.4-2 i386 2.4.44+dfsg-5ubuntu1 [168 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main i386 libldap-common all 2.4.44+dfsg-5ubuntu1 [17.5 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main i386 libssl1.0.0 i386 1.0.2g-1ubuntu13 [910 kB] Get:54 http://ftpmaster.internal/ubuntu artful-proposed/main i386 apt-transport-https i386 1.4.6 [38.0 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main i386 openssl i386 1.0.2g-1ubuntu13 [506 kB] Get:56 http://ftpmaster.internal/ubuntu artful/main i386 ca-certificates all 20161130+nmu1 [186 kB] Get:57 http://ftpmaster.internal/ubuntu artful-proposed/main i386 advancecomp i386 1.23-1 [189 kB] Get:58 http://ftpmaster.internal/ubuntu artful-proposed/main i386 binutils i386 2.28-5ubuntu1 [2532 kB] Get:59 http://ftpmaster.internal/ubuntu artful/main i386 libquadmath0 i386 7.1.0-6ubuntu2 [204 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main i386 libitm1 i386 7.1.0-6ubuntu2 [30.3 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main i386 libmpx2 i386 7.1.0-6ubuntu2 [13.0 kB] Get:62 http://ftpmaster.internal/ubuntu artful/main i386 libubsan0 i386 7.1.0-6ubuntu2 [134 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main i386 libcilkrts5 i386 7.1.0-6ubuntu2 [47.4 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main i386 libgomp1 i386 7.1.0-6ubuntu2 [80.2 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main i386 libatomic1 i386 7.1.0-6ubuntu2 [9694 B] Get:66 http://ftpmaster.internal/ubuntu artful/main i386 libasan3 i386 6.3.0-18ubuntu2 [308 kB] Get:67 http://ftpmaster.internal/ubuntu artful/main i386 g++-6 i386 6.3.0-18ubuntu2 [7652 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main i386 libstdc++-6-dev i386 6.3.0-18ubuntu2 [1454 kB] Get:69 http://ftpmaster.internal/ubuntu artful/main i386 gcc-6 i386 6.3.0-18ubuntu2 [7469 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main i386 libgcc-6-dev i386 6.3.0-18ubuntu2 [2333 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main i386 libcc1-0 i386 7.1.0-6ubuntu2 [41.2 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main i386 cpp-6 i386 6.3.0-18ubuntu2 [6850 kB] Get:73 http://ftpmaster.internal/ubuntu artful/main i386 gcc-6-base i386 6.3.0-18ubuntu2 [17.2 kB] Get:74 http://ftpmaster.internal/ubuntu artful/main i386 dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main i386 libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:76 http://ftpmaster.internal/ubuntu artful/main i386 libusb-0.1-4 i386 2:0.1.12-31 [17.7 kB] Get:77 http://ftpmaster.internal/ubuntu artful-proposed/main i386 linux-libc-dev i386 4.11.0-5.10 [915 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 53.3 MB in 12s (4403 kB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libselinux1_2.6-3build1_i386.deb ... Unpacking libselinux1:i386 (2.6-3build1) over (2.6-3) ... Setting up libselinux1:i386 (2.6-3build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2build1_all.deb ... Unpacking libsemanage-common (2.6-2build1) over (2.6-2) ... Setting up libsemanage-common (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2build1_i386.deb ... Unpacking libsemanage1:i386 (2.6-2build1) over (2.6-2) ... Setting up libsemanage1:i386 (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.2ubuntu2_i386.deb ... Unpacking passwd (1:4.2-3.2ubuntu2) over (1:4.2-3.2ubuntu1) ... Setting up passwd (1:4.2-3.2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libuuid1_2.29-1ubuntu3_i386.deb ... Unpacking libuuid1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libuuid1:i386 (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libblkid1_2.29-1ubuntu3_i386.deb ... Unpacking libblkid1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libblkid1:i386 (2.29-1ubuntu3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libkmod2_24-1ubuntu1_i386.deb ... Unpacking libkmod2:i386 (24-1ubuntu1) over (22-1.1ubuntu1) ... Preparing to unpack .../libmount1_2.29-1ubuntu3_i386.deb ... Unpacking libmount1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libmount1:i386 (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../systemd_233-6ubuntu3_i386.deb ... Unpacking systemd (233-6ubuntu3) over (232-21ubuntu3) ... dpkg: warning: unable to delete old directory '/etc/dbus-1/system.d': Directory not empty dpkg: warning: unable to delete old directory '/etc/dbus-1': Directory not empty Preparing to unpack .../libsystemd0_233-6ubuntu3_i386.deb ... Unpacking libsystemd0:i386 (233-6ubuntu3) over (232-21ubuntu3) ... Setting up libsystemd0:i386 (233-6ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../archives/init_1.48_i386.deb ... Unpacking init (1.48) over (1.47) ... Setting up libapparmor1:i386 (2.11.0-2ubuntu8) ... Setting up libkmod2:i386 (24-1ubuntu1) ... Setting up systemd (233-6ubuntu3) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../libudev1_233-6ubuntu3_i386.deb ... Unpacking libudev1:i386 (233-6ubuntu3) over (232-21ubuntu3) ... Setting up libudev1:i386 (233-6ubuntu3) ... (Reading database ... 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Unpacking libroken18-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../03-libasn1-8-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libasn1-8-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../04-libtasn1-6_4.10-1.1_i386.deb ... Unpacking libtasn1-6:i386 (4.10-1.1) over (4.10-1) ... Preparing to unpack .../05-libgnutls30_3.5.8-5ubuntu1_i386.deb ... Unpacking libgnutls30:i386 (3.5.8-5ubuntu1) over (3.5.6-4ubuntu4) ... Preparing to unpack .../06-libheimbase1-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libheimbase1-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../07-libhcrypto4-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libhcrypto4-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../08-libwind0-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libwind0-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... 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Unpacking libldap-common (2.4.44+dfsg-5ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../16-libssl1.0.0_1.0.2g-1ubuntu13_i386.deb ... Unpacking libssl1.0.0:i386 (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../17-apt-transport-https_1.4.6_i386.deb ... Unpacking apt-transport-https (1.4.6) over (1.4.1ubuntu2) ... Preparing to unpack .../18-openssl_1.0.2g-1ubuntu13_i386.deb ... Unpacking openssl (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../19-ca-certificates_20161130+nmu1_all.deb ... Unpacking ca-certificates (20161130+nmu1) over (20161130) ... Preparing to unpack .../20-advancecomp_1.23-1_i386.deb ... Unpacking advancecomp (1.23-1) over (1.20-1) ... Preparing to unpack .../21-binutils_2.28-5ubuntu1_i386.deb ... Unpacking binutils (2.28-5ubuntu1) over (2.28-4ubuntu1) ... Preparing to unpack .../22-libquadmath0_7.1.0-6ubuntu2_i386.deb ... Unpacking libquadmath0:i386 (7.1.0-6ubuntu2) over (6.3.0-14ubuntu3) ... 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Unpacking g++-6 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../31-libstdc++-6-dev_6.3.0-18ubuntu2_i386.deb ... Unpacking libstdc++-6-dev:i386 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../32-gcc-6_6.3.0-18ubuntu2_i386.deb ... Unpacking gcc-6 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../33-libgcc-6-dev_6.3.0-18ubuntu2_i386.deb ... Unpacking libgcc-6-dev:i386 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../34-libcc1-0_7.1.0-6ubuntu2_i386.deb ... Unpacking libcc1-0:i386 (7.1.0-6ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../35-cpp-6_6.3.0-18ubuntu2_i386.deb ... Unpacking cpp-6 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../36-gcc-6-base_6.3.0-18ubuntu2_i386.deb ... Unpacking gcc-6-base:i386 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../37-dpkg-dev_1.18.24ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../38-libdpkg-perl_1.18.24ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../39-libusb-0.1-4_2%3a0.1.12-31_i386.deb ... Unpacking libusb-0.1-4:i386 (2:0.1.12-31) over (2:0.1.12-30) ... Preparing to unpack .../40-linux-libc-dev_4.11.0-5.10_i386.deb ... Unpacking linux-libc-dev:i386 (4.11.0-5.10) over (4.10.0-20.22) ... Setting up libquadmath0:i386 (7.1.0-6ubuntu2) ... Setting up libgomp1:i386 (7.1.0-6ubuntu2) ... Setting up libatomic1:i386 (7.1.0-6ubuntu2) ... Setting up perl-modules-5.24 (5.24.1-3ubuntu1) ... Setting up libperl5.24:i386 (5.24.1-3ubuntu1) ... Setting up libcc1-0:i386 (7.1.0-6ubuntu2) ... Setting up apt-transport-https (1.4.6) ... Setting up libssl1.0.0:i386 (1.0.2g-1ubuntu13) ... Setting up libldap-common (2.4.44+dfsg-5ubuntu1) ... Setting up libcilkrts5:i386 (7.1.0-6ubuntu2) ... Setting up systemd-sysv (233-6ubuntu3) ... Setting up libubsan0:i386 (7.1.0-6ubuntu2) ... Setting up gcc-6-base:i386 (6.3.0-18ubuntu2) ... Setting up linux-libc-dev:i386 (4.11.0-5.10) ... Setting up advancecomp (1.23-1) ... Setting up libroken18-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libdevmapper1.02.1:i386 (2:1.02.137-2ubuntu2) ... Setting up libtasn1-6:i386 (4.10-1.1) ... Setting up perl (5.24.1-3ubuntu1) ... Setting up libmpx2:i386 (7.1.0-6ubuntu2) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:i386 (7.1.0+dfsg-13) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:i386 (3.16.2-4) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28-5ubuntu1) ... Setting up cpp-6 (6.3.0-18ubuntu2) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:i386 (2:0.1.12-31) ... Setting up libitm1:i386 (7.1.0-6ubuntu2) ... Setting up libasan3:i386 (6.3.0-18ubuntu2) ... Setting up libgcc-6-dev:i386 (6.3.0-18ubuntu2) ... Setting up libstdc++-6-dev:i386 (6.3.0-18ubuntu2) ... Setting up libwind0-heimdal:i386 (7.1.0+dfsg-13) ... Setting up init (1.48) ... Setting up libasn1-8-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libhcrypto4-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libgnutls30:i386 (3.5.8-5ubuntu1) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up libhx509-5-heimdal:i386 (7.1.0+dfsg-13) ... Setting up gcc-6 (6.3.0-18ubuntu2) ... Setting up g++-6 (6.3.0-18ubuntu2) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up libkrb5-26-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libheimntlm0-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libgssapi3-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libldap-2.4-2:i386 (2.4.44+dfsg-5ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12707054', 'i386', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=artful-proposed', '--purge=never', '--nolog', 'proda_1.0-11.dsc'] Initiating build PACKAGEBUILD-12707054 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-78-generic #99-Ubuntu SMP Thu Apr 27 15:29:09 UTC 2017 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-06.buildd +==============================================================================+ | proda 1.0-11 (i386) 07 Jun 2017 17:07 | +==============================================================================+ Package: proda Version: 1.0-11 Source Version: 1.0-11 Distribution: artful-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/proda-dJeOQx/proda-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/proda-dJeOQx' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12707054/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- proda_1.0-11.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-XCJ6ET/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-XCJ6ET/apt_archive ./ InRelease Get:2 copy:/<>/resolver-XCJ6ET/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-XCJ6ET/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-XCJ6ET/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-XCJ6ET/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (241 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-XCJ6ET/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12503 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10) Filtered Build-Depends: debhelper (>= 10) dpkg-deb: building package 'sbuild-build-depends-proda-dummy' in '/<>/resolver-s4gsXT/apt_archive/sbuild-build-depends-proda-dummy.deb'. Ign:1 copy:/<>/resolver-s4gsXT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-s4gsXT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-s4gsXT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-s4gsXT/apt_archive ./ Sources [207 B] Get:5 copy:/<>/resolver-s4gsXT/apt_archive ./ Packages [524 B] Fetched 2850 B in 0s (221 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install proda build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-proda-dummy 0 upgraded, 30 newly installed, 1 to remove and 0 not upgraded. Need to get 16.6 MB of archives. After this operation, 62.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-s4gsXT/apt_archive ./ sbuild-build-depends-proda-dummy 0.invalid.0 [780 B] Get:2 http://ftpmaster.internal/ubuntu artful/main i386 groff-base i386 1.22.3-9 [1163 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main i386 libbsd0 i386 0.8.3-1 [44.9 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main i386 bsdmainutils i386 9.0.12ubuntu1 [175 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main i386 man-db i386 2.7.6.1-2 [906 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main i386 libmagic-mgc i386 1:5.30-1 [181 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main i386 libmagic1 i386 1:5.30-1 [74.3 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main i386 file i386 1:5.30-1 [21.7 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main i386 gettext-base i386 0.19.8.1-2ubuntu1 [48.9 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main i386 libglib2.0-0 i386 2.53.1-1 [1219 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main i386 libicu57 i386 57.1-6 [7837 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main i386 libxml2 i386 2.9.4+dfsg1-2.2ubuntu1 [733 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main i386 libsigsegv2 i386 2.10-5 [14.3 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main i386 m4 i386 1.4.18-1 [196 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main i386 autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main i386 autotools-dev all 20161112.1 [39.5 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main i386 automake all 1:1.15-6ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main i386 autopoint all 0.19.8.1-2ubuntu1 [411 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main i386 libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main i386 dh-autoreconf all 14 [15.5 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main i386 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main i386 libfile-stripnondeterminism-perl all 0.034-1 [12.8 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main i386 dh-strip-nondeterminism all 0.034-1 [5010 B] Get:26 http://ftpmaster.internal/ubuntu artful/main i386 libcroco3 i386 0.6.11-3 [87.2 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main i386 gettext i386 0.19.8.1-2ubuntu1 [1088 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main i386 po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main i386 debhelper all 10.4ubuntu3 [876 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.6 MB in 0s (19.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12503 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12494 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_i386.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../01-libbsd0_0.8.3-1_i386.deb ... Unpacking libbsd0:i386 (0.8.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12ubuntu1_i386.deb ... Unpacking bsdmainutils (9.0.12ubuntu1) ... 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Setting up libmagic1:i386 (1:5.30-1) ... Setting up libcroco3:i386 (0.6.11-3) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.034-1) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.034-1) ... Setting up debhelper (10.4ubuntu3) ... Setting up sbuild-build-depends-proda-dummy (0.invalid.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14321 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-78-generic amd64 (i686) Toolchain package versions: binutils_2.28-5ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.3.0-18ubuntu2 gcc-6_6.3.0-18ubuntu2 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.3.0-18ubuntu2 libstdc++6_7.1.0-6ubuntu2 linux-libc-dev_4.11.0-5.10 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4.6 apt-transport-https_1.4.6 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu99 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28-5ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu1 cpp-6_6.3.0-18ubuntu2 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.4ubuntu3 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.034-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2ubuntu2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20161106-2 g++_4:6.3.0-2ubuntu1 g++-6_6.3.0-18ubuntu2 gcc_4:6.3.0-2ubuntu1 gcc-6_6.3.0-18ubuntu2 gcc-6-base_6.3.0-18ubuntu2 gcc-7-base_7.1.0-6ubuntu2 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.48 init-system-helpers_1.48 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu8 libapt-pkg5.0_1.4.6 libarchive-zip-perl_1.59-1 libasan3_6.3.0-18ubuntu2 libasn1-8-heimdal_7.1.0+dfsg-13 libassuan0_2.4.3-2 libatomic1_7.1.0-6ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.6.6-1ubuntu2 libaudit1_1:2.6.6-1ubuntu2 libblkid1_2.29-1ubuntu3 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-9ubuntu2 libc-dev-bin_2.24-9ubuntu2 libc6_2.24-9ubuntu2 libc6-dev_2.24-9ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-6ubuntu2 libcilkrts5_7.1.0-6ubuntu2 libcomerr2_1.43.4-2 libcroco3_0.6.11-3 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.52.1-5ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu3 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.034-1 libgcc-6-dev_6.3.0-18ubuntu2 libgcc1_1:7.1.0-6ubuntu2 libgcrypt20_1.7.6-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.1-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-5ubuntu1 libgomp1_7.1.0-6ubuntu2 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15-2 libgssapi3-heimdal_7.1.0+dfsg-13 libhcrypto4-heimdal_7.1.0+dfsg-13 libheimbase1-heimdal_7.1.0+dfsg-13 libheimntlm0-heimdal_7.1.0+dfsg-13 libhogweed4_3.3-1 libhx509-5-heimdal_7.1.0+dfsg-13 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.18-1 libitm1_7.1.0-6ubuntu2 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-13 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-5ubuntu1 libldap-common_2.4.44+dfsg-5ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libmpx2_7.1.0-6ubuntu2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-3 libperl5.24_5.24.1-3ubuntu1 libpipeline1_1.4.1-2 libpng16-16_1.6.29-2 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libquadmath0_7.1.0-6ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.1.0+dfsg-13 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build1 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu3 libsqlite3-0_3.16.2-4 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.3.0-18ubuntu2 libstdc++6_7.1.0-6ubuntu2 libsystemd0_233-6ubuntu3 libtasn1-6_4.10-1.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.1.0-6ubuntu2 libudev1_233-6ubuntu3 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu3 libwind0-heimdal_7.1.0+dfsg-13 libxml2_2.9.4+dfsg1-2.2ubuntu1 linux-libc-dev_4.11.0-5.10 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu3 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.24.1-3ubuntu1 perl-base_5.24.1-3ubuntu1 perl-modules-5.24_5.24.1-3ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proda-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 systemd_233-6ubuntu3 systemd-sysv_233-6ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2017b-1 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu3 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jun 7 08:11:00 2017 UTC gpgv: using RSA key gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proda_1.0-11.dsc dpkg-source: info: extracting proda in proda-1.0 dpkg-source: info: unpacking proda_1.0.orig.tar.gz dpkg-source: info: unpacking proda_1.0-11.debian.tar.xz dpkg-source: info: applying 01-fix_gcc4.3_warnings.patch dpkg-source: info: applying 02-fix_CXXFLAGS.patch dpkg-source: info: applying 03-fix_FTBFS_gcc4.3_missing_includes.patch dpkg-source: info: applying 04-honour_CXX.patch dpkg-source: info: applying 05-fix_FTBFS_with_GCC6.patch dpkg-source: info: applying hardening.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package proda dpkg-buildpackage: info: source version 1.0-11 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build proda-1.0 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o make[1]: Leaving directory '/<>' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 make[1]: Entering directory '/<>' g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o AlignedFragment.o AlignedFragment.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Assert.o Assert.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Block.o Block.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Consistency.o Consistency.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o GlobalAlign.o GlobalAlign.cc In file included from Matrix.h:12:0, from GlobalAlign.h:11, from GlobalAlign.cc:7: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:12:0, from Types.h:12, from Block.h:10, from Block.cc:6: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12:0, from Consistency.h:10, from Consistency.cc:5: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Consistency.h:10:0, from Consistency.cc:5: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from Types.h:12, from Block.h:10, from Block.cc:6: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12:0, from Block.h:10, from Block.cc:6: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Block.cc:9:0: MultiSequence.h:24:57: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:67: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:31: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:25: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ Block.cc: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: Block.cc:58:36: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~ In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from GlobalAlign.h:11, from GlobalAlign.cc:7: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from GlobalAlign.h:11, from GlobalAlign.cc:7: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from GlobalAlign.h:11:0, from GlobalAlign.cc:7: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o LocalAlign.o LocalAlign.cc In file included from GlobalAlign.h:12:0, from GlobalAlign.cc:7: MultiSequence.h:24:57: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:67: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:31: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:25: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Matrix.h:12:0, from LocalAlign.h:12, from LocalAlign.cc:5: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Main.o Main.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o PairAligner.o PairAligner.cc In file included from Sequence.h:11:0, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: AlignedFragment.h:61:68: warning: ‘best_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] { begin = start; end = e; multiply = mul; id = sid; length = end - begin + 1;} ~~~~^~~~~~~ Block.cc:58:49: note: ‘best_end’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~~ Block.cc:130:13: warning: ‘bk’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ~~~~~~~~~~^~~ Block.cc:130:12: warning: ‘bfrag’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ^ Block.cc:117:24: warning: ‘best_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] if((start = afrags[i].GetAlignPos(first.id, first.begin, ssecond)) != NULL && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (finish = afrags[i].GetAlignPos(first.id, first.end, fsecond)) != NULL && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ssecond == fsecond && finish->second - start->second+1 >= first.length*0.6){ ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Block.cc:117:24: warning: ‘best_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from LocalAlign.h:12, from LocalAlign.cc:5: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from LocalAlign.h:12, from LocalAlign.cc:5: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from LocalAlign.h:12:0, from LocalAlign.cc:5: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from MultiSequence.h:12:0, from Main.cc:12: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12:0, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13:0, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12:0, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Main.cc:12:0: MultiSequence.h:24:57: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:67: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:31: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:25: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Main.cc:18:0: Tree.h:44:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:33: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Matrix.o Matrix.cc In file included from PairAligner.h:10:0, from PairAligner.cc:9: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12:0, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13:0, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12:0, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.h:12:0, from Matrix.cc:7: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ Main.cc: In function ‘void RunLocalAligner(int, char**)’: Main.cc:339:52: warning: ‘fasta’ may be used uninitialized in this function [-Wmaybe-uninitialized] seqs->WriteFASTA(fasta,block,result,start,end); ^ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o MultiSequence.o MultiSequence.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ProbModel.o ProbModel.cc In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from Matrix.cc:7: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from Matrix.cc:7: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.cc:7:0: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ Matrix.cc: In member function ‘float Matrix::SumOfRow(int, int) const’: Matrix.cc:165:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ Matrix.cc:166:9: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] float *ptr; ^~~ Matrix.cc: In member function ‘float Matrix::SumOfColumn(int, int) const’: Matrix.cc:186:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ In file included from Matrix.h:12:0, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Score.o Score.cc In file included from MultiSequence.h:12:0, from MultiSequence.cc:10: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ScoreMatrix.o ScoreMatrix.cc In file included from Matrix.h:12:0, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13:0, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12:0, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Sequence.o Sequence.cc In file included from MultiSequence.cc:10:0: MultiSequence.h:24:57: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:67: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:31: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:25: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ MultiSequence.cc:86:44: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetNumSequences() const { ^~~~~ MultiSequence.cc:94:38: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetLength() const { ^~~~~ MultiSequence.cc:130:70: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::AutoDetectFileFormat (const char *filename) const { ^~~~~ MultiSequence.cc:388:80: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char MultiSequence::ComputeAnnotation (const char *data, const int size) const { ^~~~~ In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12:0, from ProbModel.h:11, from ProbModel.cc:8: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Sequence.cc:8:0: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ Sequence.cc:121:34: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetLength () const { ^~~~~ Sequence.cc:129:30: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetID () const { ^~~~~ In file included from ScoreMatrix.h:12:0, from ScoreMatrix.cc:7: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from ScoreMatrix.cc:7:0: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.h:12:0, from Types.h:12, from ProbModel.h:11, from ScoreMatrix.cc:8: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Types.h:12:0, from ProbModel.h:11, from ScoreMatrix.cc:8: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o SparseMatrix.o SparseMatrix.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Tree.o Tree.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Utilities.o Utilities.cc In file included from Matrix.h:12:0, from Tree.h:9, from Tree.cc:6: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from SparseMatrix.h:12, from SparseMatrix.cc:6: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from SparseMatrix.h:12, from SparseMatrix.cc:6: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12:0, from SparseMatrix.cc:6: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.cc:6:0: SparseMatrix.h:57:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ SparseMatrix.cc:199:57: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetRowSize (int layer, int row) const { ^~~~~ SparseMatrix.cc:209:40: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumLayers() const { ^~~~~ SparseMatrix.cc:217:38: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumRows() const { ^~~~~ SparseMatrix.cc:225:38: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumCols() const { ^~~~~ In file included from ScoreMatrix.h:12:0, from Matrix.h:13, from Tree.h:9, from Tree.cc:6: Sequence.h:51:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:22: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13:0, from Tree.h:9, from Tree.cc:6: ScoreMatrix.h:88:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:9:0, from Tree.cc:6: Matrix.h:100:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:26: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:10:0, from Tree.cc:6: MultiSequence.h:24:57: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:67: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:31: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:25: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Tree.cc:6:0: Tree.h:44:28: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:33: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ Tree.cc:34:40: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool Tree::TreeNode::GetIsLeaf() const { ^~~~~ Tree.cc:42:45: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Tree::TreeNode::GetNumSequences() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -lm AlignedFragment.o Assert.o Block.o Consistency.o GlobalAlign.o LocalAlign.o Main.o PairAligner.o Matrix.o MultiSequence.o ProbModel.o Score.o ScoreMatrix.o Sequence.o SparseMatrix.o Tree.o Utilities.o -o proda -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 pkgstriptranslations: processing proda-dbgsym (in debian/.debhelper/proda/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/proda/dbgsym-root/DEBIAN/control, package proda-dbgsym, directory debian/.debhelper/proda/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package proda-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'proda-dbgsym' in 'debian/.debhelper/scratch-space/build-proda/proda-dbgsym_1.0-11_i386.deb'. Renaming proda-dbgsym_1.0-11_i386.deb to proda-dbgsym_1.0-11_i386.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing proda (in debian/proda); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/proda/DEBIAN/control, package proda, directory debian/proda pkgstripfiles: Truncating usr/share/doc/proda/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package proda ... pkgstripfiles: No PNG files. dpkg-deb: building package 'proda' in '../proda_1.0-11_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../proda_1.0-11_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build proda-1.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170607-1708 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ proda_1.0-11_i386.changes: -------------------------- Format: 1.8 Date: Tue, 06 Jun 2017 20:54:45 -0400 Source: proda Binary: proda Architecture: i386 Version: 1.0-11 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nadiya Sitdykova Description: proda - multiple alignment of protein sequences Changes: proda (1.0-11) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova] * Add autopkgtest test-suite . [ Andreas Tille ] * Move packaging from SVN to Git * cme fix dpkg-control * debhelper 10 * d/watch: verified and set version=4 Checksums-Sha1: 573be15448198d176e731385fe5b17113dce1ccd 260178 proda-dbgsym_1.0-11_i386.ddeb e264415ddeeab95aef439daeb1231a6cdf779ba1 4900 proda_1.0-11_i386.buildinfo 9a4007ec3e2f556b16603e0e9d9e7518c4416e88 61834 proda_1.0-11_i386.deb Checksums-Sha256: d1f1ad01eb23d32d3b0c2537eae88b92c23146efec14f64a05fd256dc923634a 260178 proda-dbgsym_1.0-11_i386.ddeb 25afa1781c7ef6060e288979677d598f7cfd0970faf4c59d7be0cd7f0602f74e 4900 proda_1.0-11_i386.buildinfo 4cf7aead4a9499777a83ee0b0210eb84ece1645b19ef04b66c4b0fab1cff0010 61834 proda_1.0-11_i386.deb Files: 6a946f5d3b52a805cbb271da74d810ea 260178 debug extra proda-dbgsym_1.0-11_i386.ddeb 38addab3a1cf28e4b1db3ac3047ef4ce 4900 science optional proda_1.0-11_i386.buildinfo b2b2101afc48ebf83feb854bdd18a11b 61834 science optional proda_1.0-11_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ proda_1.0-11_i386.deb --------------------- new debian package, version 2.0. size 61834 bytes: control archive=853 bytes. 762 bytes, 16 lines control 448 bytes, 7 lines md5sums Package: proda Version: 1.0-11 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 155 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libstdc++6 (>= 5) Section: science Priority: optional Homepage: http://proda.stanford.edu/ Description: multiple alignment of protein sequences ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions. drwxr-xr-x root/root 0 2017-06-07 00:54 ./ drwxr-xr-x root/root 0 2017-06-07 00:54 ./usr/ drwxr-xr-x root/root 0 2017-06-07 00:54 ./usr/bin/ -rwxr-xr-x root/root 138476 2017-06-07 00:54 ./usr/bin/proda drwxr-xr-x root/root 0 2017-06-07 00:54 ./usr/share/ drwxr-xr-x root/root 0 2017-06-07 00:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-07 00:54 ./usr/share/doc/proda/ -rw-r--r-- root/root 179 2017-06-07 00:54 ./usr/share/doc/proda/README.test -rw-r--r-- root/root 1830 2017-06-07 00:54 ./usr/share/doc/proda/changelog.Debian.gz -rw-r--r-- root/root 893 2017-06-07 00:54 ./usr/share/doc/proda/copyright -rw-r--r-- root/root 1083 2017-06-07 00:54 ./usr/share/doc/proda/input.mfa -rw-r--r-- root/root 369 2017-06-07 00:54 ./usr/share/doc/proda/run-unit-test drwxr-xr-x root/root 0 2017-06-07 00:54 ./usr/share/man/ drwxr-xr-x root/root 0 2017-06-07 00:54 ./usr/share/man/man1/ -rw-r--r-- root/root 2335 2017-06-07 00:54 ./usr/share/man/man1/proda.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 3544 Build-Time: 13 Distribution: artful-proposed Host Architecture: i386 Install-Time: 13 Job: proda_1.0-11.dsc Machine Architecture: amd64 Package: proda Package-Time: 27 Source-Version: 1.0-11 Space: 3544 Status: successful Version: 1.0-11 -------------------------------------------------------------------------------- Finished at 20170607-1708 Build needed 00:00:27, 3544k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12707054'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12707054/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12707054'] Unmounting chroot for build PACKAGEBUILD-12707054... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12707054'] Removing build PACKAGEBUILD-12707054