https://launchpad.net/ubuntu/+source/proda/1.0-12/+build/15633977 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-013 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 19:07:47 ntpdate[1828]: adjust time server 10.211.37.1 offset 0.000215 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15633977 /home/buildd/filecache-default/c94e68d26d8f9980ef1477bde7a83b553e812c5f Creating target for build PACKAGEBUILD-15633977 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15633977 Starting target for build PACKAGEBUILD-15633977 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15633977 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15633977 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15633977 Updating target for build PACKAGEBUILD-15633977 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [968 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8430 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5039 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [104 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [68.4 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [473 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [489 kB] Fetched 16.6 MB in 8s (2132 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-arm-linux-gnueabihf binutils-common cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libkmod2 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 51 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 38.4 MB of archives. After this operation, 40.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf base-files armhf 10.1ubuntu8 [59.8 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf dash armhf 0.5.10.2-1 [81.2 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main armhf findutils armhf 4.6.0+git+20181018-1 [279 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf hostname armhf 3.21 [10.3 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm6 armhf 1.18.1-1 [24.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm-compat4 armhf 1.18.1-1 [5784 B] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libperl5.28 armhf 5.28.0-3 [3153 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf perl armhf 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf perl-base armhf 5.28.0-3 [1397 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.2 [590 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main armhf sed armhf 4.5-2 [178 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd-sysv armhf 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libapparmor1 armhf 2.12-4ubuntu10 [25.7 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libcap-ng0 armhf 0.7.9-1build1 [9600 B] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf libaudit1 armhf 1:2.8.3-1ubuntu3 [35.5 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgpg-error0 armhf 1.32-3 [48.1 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libkmod2 armhf 25-1ubuntu1.1 [35.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd armhf 239-7ubuntu10.1 [2804 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsystemd0 armhf 239-7ubuntu10.1 [191 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init armhf 1.55 [6476 B] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libcc1-0 armhf 8.2.0-9ubuntu1 [32.5 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libgomp1 armhf 8.2.0-9ubuntu1 [66.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libatomic1 armhf 8.2.0-9ubuntu1 [7068 B] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libasan5 armhf 8.2.0-9ubuntu1 [349 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libubsan1 armhf 8.2.0-9ubuntu1 [109 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8-base armhf 8.2.0-9ubuntu1 [18.6 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++6 armhf 8.2.0-9ubuntu1 [350 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf g++-8 armhf 8.2.0-9ubuntu1 [6431 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++-8-dev armhf 8.2.0-9ubuntu1 [1594 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libgcc-8-dev armhf 8.2.0-9ubuntu1 [632 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8 armhf 8.2.0-9ubuntu1 [6349 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf cpp-8 armhf 8.2.0-9ubuntu1 [5643 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libgcc1 armhf 1:8.2.0-9ubuntu1 [37.1 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf libbinutils armhf 2.31.1-7ubuntu1 [309 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf binutils-common armhf 2.31.1-7ubuntu1 [194 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf binutils armhf 2.31.1-7ubuntu1 [3360 B] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-7ubuntu1 [2144 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libselinux1 armhf 2.8-1build2 [59.1 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-1build2 [6892 B] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-1build2 [72.5 kB] Get:44 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libudev1 armhf 239-7ubuntu10.1 [48.3 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libseccomp2 armhf 2.3.3-3ubuntu2 [30.5 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.145-4.1ubuntu4 [118 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dmsetup armhf 2:1.02.145-4.1ubuntu4 [73.6 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsqlite3-0 armhf 3.25.3-1 [447 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018g-1 [188 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf g++ armhf 4:8.2.0-2ubuntu2 [1616 B] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf gcc armhf 4:8.2.0-2ubuntu2 [5236 B] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf cpp armhf 4:8.2.0-2ubuntu2 [27.6 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.18.0-11.12 [1022 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main armhf lockfile-progs armhf 0.1.18 [9372 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.4 MB in 2s (18.1 MB/s) (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_armhf.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_armhf.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_armhf.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../hostname_3.21_armhf.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_armhf.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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Setting up cpp (4:8.2.0-2ubuntu2) ... Setting up libcc1-0:armhf (8.2.0-9ubuntu1) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 9 19:08:45 UTC 2018. Universal Time is now: Fri Nov 9 19:08:45 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up linux-libc-dev:armhf (4.18.0-11.12) ... Setting up libdevmapper1.02.1:armhf (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm6:armhf (1.18.1-1) ... Setting up binutils-common:armhf (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:armhf (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:armhf (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:armhf (8.2.0-9ubuntu1) ... Setting up libubsan1:armhf (8.2.0-9ubuntu1) ... Setting up libbinutils:armhf (2.31.1-7ubuntu1) ... Setting up libperl5.28:armhf (5.28.0-3) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-7ubuntu1) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15633977 armhf disco-proposed -c chroot:build-PACKAGEBUILD-15633977 --arch=armhf --dist=disco-proposed --nolog proda_1.0-12.dsc Initiating build PACKAGEBUILD-15633977 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-013.buildd +==============================================================================+ | proda 1.0-12 (armhf) 09 Nov 2018 19:08 | +==============================================================================+ Package: proda Version: 1.0-12 Source Version: 1.0-12 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/proda-my4LvT/proda-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/proda-my4LvT' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15633977/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- proda_1.0-12.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-hYG8JA/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-hYG8JA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hYG8JA/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hYG8JA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hYG8JA/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-hYG8JA/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (97.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-hYG8JA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~) Filtered Build-Depends: debhelper (>= 11~) dpkg-deb: building package 'sbuild-build-depends-proda-dummy' in '/<>/resolver-kJhtUF/apt_archive/sbuild-build-depends-proda-dummy.deb'. Ign:1 copy:/<>/resolver-kJhtUF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kJhtUF/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-kJhtUF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kJhtUF/apt_archive ./ Sources [209 B] Get:5 copy:/<>/resolver-kJhtUF/apt_archive ./ Packages [528 B] Fetched 2856 B in 0s (58.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install proda build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libxml2 m4 man-db po-debconf sbuild-build-depends-proda-dummy 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 15.9 MB of archives. After this operation, 57.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-kJhtUF/apt_archive ./ sbuild-build-depends-proda-dummy 0.invalid.0 [852 B] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf libbsd0 armhf 0.9.1-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf libpipeline1 armhf 1.5.0-2 [21.5 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main armhf man-db armhf 2.8.4-3 [1003 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libmagic-mgc armhf 1:5.34-2 [197 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libmagic1 armhf 1:5.34-2 [65.3 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf file armhf 1:5.34-2 [21.9 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf libelf1 armhf 0.170-0.5.0ubuntu1 [40.8 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-0 armhf 2.58.1-2 [1024 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf libicu60 armhf 60.2-6ubuntu1 [7801 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf libxml2 armhf 2.9.4+dfsg1-7ubuntu2 [533 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf gettext-base armhf 0.19.8.1-8 [45.9 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf m4 armhf 1.4.18-1ubuntu1 [186 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main armhf automake all 1:1.16.1-4 [522 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf autopoint all 0.19.8.1-8 [412 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libtool all 2.4.6-6 [195 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main armhf dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf libarchive-zip-perl all 1.64-1 [84.9 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dh-strip-nondeterminism all 0.044-1 [5124 B] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf dwz armhf 0.12-2 [72.0 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf gettext armhf 0.19.8.1-8 [833 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf debhelper all 11.3.2ubuntu1 [883 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.9 MB in 1s (23.2 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.0-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-3_armhf.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_armhf.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:armhf. 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Setting up libicu60:armhf (60.2-6ubuntu1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libelf1:armhf (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-8) ... Setting up libpipeline1:armhf (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:armhf (1:5.34-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-8) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up gettext (0.19.8.1-8) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-proda-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (armv7l) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-arm-linux-gnueabihf_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu2 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proda-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Sep 18 17:09:36 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proda_1.0-12.dsc dpkg-source: info: extracting proda in proda-1.0 dpkg-source: info: unpacking proda_1.0.orig.tar.gz dpkg-source: info: unpacking proda_1.0-12.debian.tar.xz dpkg-source: info: applying 01-fix_gcc4.3_warnings.patch dpkg-source: info: applying 02-fix_CXXFLAGS.patch dpkg-source: info: applying 03-fix_FTBFS_gcc4.3_missing_includes.patch dpkg-source: info: applying 04-honour_CXX.patch dpkg-source: info: applying 05-fix_FTBFS_with_GCC6.patch dpkg-source: info: applying hardening.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15633977 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15633977 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15633977 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package proda dpkg-buildpackage: info: source version 1.0-12 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build proda-1.0 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o AlignedFragment.o AlignedFragment.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Assert.o Assert.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Block.o Block.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Consistency.o Consistency.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o GlobalAlign.o GlobalAlign.cc In file included from Matrix.h:12, from GlobalAlign.h:11, from GlobalAlign.cc:7: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from Block.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from GlobalAlign.h:11, from GlobalAlign.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from GlobalAlign.h:11, from GlobalAlign.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from GlobalAlign.h:11, from GlobalAlign.cc:7: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from GlobalAlign.h:12, from GlobalAlign.cc:7: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Consistency.h:10, from Consistency.cc:5: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o LocalAlign.o LocalAlign.cc In file included from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from Block.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Block.cc:9: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ Block.cc: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: Block.cc:58:36: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Main.o Main.cc In file included from Matrix.h:12, from LocalAlign.h:12, from LocalAlign.cc:5: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o PairAligner.o PairAligner.cc In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: AlignedFragment.h:66:66: warning: ‘best_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] {begin = f.begin; length = f.length; multiply = f.multiply;end = f.end;id = f.id;return *this;} ~~~~^~~~~~~ Block.cc:58:49: note: ‘best_end’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~~ Block.cc:130:13: warning: ‘bk’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ~~~~~~~~~~^~~ Block.cc:130:12: warning: ‘bfrag’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ^ In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h:61:68: warning: ‘best_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] { begin = start; end = e; multiply = mul; id = sid; length = end - begin + 1;} ~~~~^~~~~~~ Block.cc:58:20: note: ‘best_pos’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~~ In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h:66:77: warning: ‘best_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] {begin = f.begin; length = f.length; multiply = f.multiply;end = f.end;id = f.id;return *this;} ~~~^~~~~~ Block.cc:58:11: note: ‘best_id’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~ In file included from PairAligner.h:10, from PairAligner.cc:9: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from LocalAlign.h:12, from LocalAlign.cc:5: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from LocalAlign.h:12, from LocalAlign.cc:5: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from LocalAlign.h:12, from LocalAlign.cc:5: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from MultiSequence.h:12, from Main.cc:12: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Main.cc:12: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Main.cc:18: Tree.h:44:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Matrix.o Matrix.cc Main.cc: In function ‘void RunLocalAligner(int, char**)’: Main.cc:339:22: warning: ‘fasta’ may be used uninitialized in this function [-Wmaybe-uninitialized] seqs->WriteFASTA(fasta,block,result,start,end); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Matrix.h:12, from Matrix.cc:7: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o MultiSequence.o MultiSequence.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ProbModel.o ProbModel.cc In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Matrix.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Matrix.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.cc:7: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ Matrix.cc: In member function ‘float Matrix::SumOfRow(int, int) const’: Matrix.cc:165:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ Matrix.cc:166:9: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] float *ptr; ^~~ Matrix.cc: In member function ‘float Matrix::SumOfColumn(int, int) const’: Matrix.cc:186:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Score.o Score.cc In file included from MultiSequence.h:12, from MultiSequence.cc:10: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from MultiSequence.cc:10: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ MultiSequence.cc:86:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetNumSequences() const { ^~~~~ MultiSequence.cc:94:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetLength() const { ^~~~~ MultiSequence.cc:130:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::AutoDetectFileFormat (const char *filename) const { ^~~~~ MultiSequence.cc:388:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char MultiSequence::ComputeAnnotation (const char *data, const int size) const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ScoreMatrix.o ScoreMatrix.cc In file included from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Sequence.o Sequence.cc In file included from ScoreMatrix.h:12, from ScoreMatrix.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from ScoreMatrix.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from ScoreMatrix.cc:8: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from ScoreMatrix.cc:8: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o SparseMatrix.o SparseMatrix.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Tree.o Tree.cc In file included from Sequence.cc:8: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ Sequence.cc:121:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetLength () const { ^~~~~ Sequence.cc:129:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetID () const { ^~~~~ In file included from Matrix.h:12, from Tree.h:9, from Tree.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Utilities.o Utilities.cc Utilities.cc: In function ‘int GetData(FILE*, char*&, const char*, const char*)’: Utilities.cc:55:30: warning: comparison is always true due to limited range of data type [-Wtype-limits] while ((ch = fgetc (file)) != EOF){ ^ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Tree.h:9, from Tree.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Tree.h:9, from Tree.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:9, from Tree.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:10, from Tree.cc:6: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Tree.cc:6: Tree.h:44:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ Tree.cc:34:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool Tree::TreeNode::GetIsLeaf() const { ^~~~~ Tree.cc:42:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Tree::TreeNode::GetNumSequences() const { ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from SparseMatrix.h:12, from SparseMatrix.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from SparseMatrix.h:12, from SparseMatrix.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12, from SparseMatrix.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ SparseMatrix.cc:199:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetRowSize (int layer, int row) const { ^~~~~ SparseMatrix.cc:209:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumLayers() const { ^~~~~ SparseMatrix.cc:217:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumRows() const { ^~~~~ SparseMatrix.cc:225:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -lm AlignedFragment.o Assert.o Block.o Consistency.o GlobalAlign.o LocalAlign.o Main.o PairAligner.o Matrix.o MultiSequence.o ProbModel.o Score.o ScoreMatrix.o Sequence.o SparseMatrix.o Tree.o Utilities.o -o proda -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing proda-dbgsym (in debian/.debhelper/proda/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing proda (in debian/proda); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/proda/dbgsym-root/DEBIAN/control, package proda-dbgsym, directory debian/.debhelper/proda/dbgsym-root dpkg-deb: building package 'proda-dbgsym' in 'debian/.debhelper/scratch-space/build-proda/proda-dbgsym_1.0-12_armhf.deb'. Renaming proda-dbgsym_1.0-12_armhf.deb to proda-dbgsym_1.0-12_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/proda/DEBIAN/control, package proda, directory debian/proda pkgstripfiles: Truncating usr/share/doc/proda/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package proda ... pkgstripfiles: No PNG files. dpkg-deb: building package 'proda' in '../proda_1.0-12_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../proda_1.0-12_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build proda-1.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-1909 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ proda_1.0-12_armhf.changes: --------------------------- Format: 1.8 Date: Tue, 18 Sep 2018 17:29:21 +0200 Source: proda Binary: proda Architecture: armhf Version: 1.0-12 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: proda - multiple alignment of protein sequences Changes: proda (1.0-12) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: bd78c9b33a4c5265576f56569e82334345f37d9c 381708 proda-dbgsym_1.0-12_armhf.ddeb 6bc54eb2c6d3de5b3f1371110bf7d1bef0cc82d8 4668 proda_1.0-12_armhf.buildinfo 23ec39a3280b5789d9592a57f28f96bffa4cb983 54152 proda_1.0-12_armhf.deb Checksums-Sha256: 975cca91712f705a66d304c0d9dad78ad032c9cf1147a273c0aa802106d3b398 381708 proda-dbgsym_1.0-12_armhf.ddeb 34035de0ca3381bbe7fc1fe531515069f133f5e6ae5bbeffcd5bd5a37dbaa4f9 4668 proda_1.0-12_armhf.buildinfo b551c8dc80674b898ab230153c49523bad002e130eb08ab970ead944274d0bb5 54152 proda_1.0-12_armhf.deb Files: 06e8389a0ecab5e5062b912d0ddcfd17 381708 debug optional proda-dbgsym_1.0-12_armhf.ddeb f2c184bda9f84b79a38ec03118b0e9fc 4668 science optional proda_1.0-12_armhf.buildinfo 2b61c42a2315c8f094a0a7fa78ba59bf 54152 science optional proda_1.0-12_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ proda_1.0-12_armhf.deb ---------------------- new debian package, version 2.0. size 54152 bytes: control archive=944 bytes. 764 bytes, 16 lines control 448 bytes, 7 lines md5sums Package: proda Version: 1.0-12 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 107 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.5), libstdc++6 (>= 5) Section: science Priority: optional Homepage: http://proda.stanford.edu/ Description: multiple alignment of protein sequences ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions. drwxr-xr-x root/root 0 2018-09-18 15:29 ./ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/bin/ -rwxr-xr-x root/root 89344 2018-09-18 15:29 ./usr/bin/proda drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/doc/proda/ -rw-r--r-- root/root 179 2018-09-18 15:29 ./usr/share/doc/proda/README.test -rw-r--r-- root/root 1912 2018-09-18 15:29 ./usr/share/doc/proda/changelog.Debian.gz -rw-r--r-- root/root 893 2018-09-18 15:29 ./usr/share/doc/proda/copyright -rw-r--r-- root/root 1083 2018-09-18 15:29 ./usr/share/doc/proda/input.mfa -rw-r--r-- root/root 369 2018-09-18 15:29 ./usr/share/doc/proda/run-unit-test drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/man/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/man/man1/ -rw-r--r-- root/root 2335 2018-09-18 15:29 ./usr/share/man/man1/proda.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 4420 Build-Time: 42 Distribution: disco-proposed Host Architecture: armhf Install-Time: 22 Job: proda_1.0-12.dsc Machine Architecture: arm64 Package: proda Package-Time: 67 Source-Version: 1.0-12 Space: 4420 Status: successful Version: 1.0-12 -------------------------------------------------------------------------------- Finished at 20181109-1909 Build needed 00:01:07, 4420k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15633977 Scanning for processes to kill in build PACKAGEBUILD-15633977