https://launchpad.net/ubuntu/+source/proda/1.0-12/+build/15633979 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-ppc64el-016 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:13:48 UTC 2018 ppc64le Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 14:06:29 ntpdate[1780]: adjust time server 10.211.37.1 offset 0.000180 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-15633979 /home/buildd/filecache-default/ccf4d97a3c9d8849c148a2cdc02e12a8fa17bfb9 Creating target for build PACKAGEBUILD-15633979 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-15633979 Starting target for build PACKAGEBUILD-15633979 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-15633979 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15633979 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-15633979 Updating target for build PACKAGEBUILD-15633979 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main ppc64el Packages [977 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe ppc64el Packages [8458 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5039 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el Packages [125 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [72.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe ppc64el Packages [530 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [369 kB] Fetched 16.6 MB in 4s (4426 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-common binutils-powerpc64le-linux-gnu cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 55 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 45.5 MB of archives. After this operation, 51.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main ppc64el base-files ppc64el 10.1ubuntu8 [60.4 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main ppc64el dash ppc64el 0.5.10.2-1 [106 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el findutils ppc64el 4.6.0+git+20181018-1 [322 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main ppc64el hostname ppc64el 3.21 [11.9 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main ppc64el perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main ppc64el libgdbm6 ppc64el 1.18.1-1 [32.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main ppc64el libgdbm-compat4 ppc64el 1.18.1-1 [6668 B] Get:8 http://ftpmaster.internal/ubuntu disco/main ppc64el libperl5.28 ppc64el 5.28.0-3 [3845 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main ppc64el perl ppc64el 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main ppc64el perl-base ppc64el 5.28.0-3 [1514 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.2 [724 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el sed ppc64el 4.5-2 [199 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el systemd-sysv ppc64el 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main ppc64el libapparmor1 ppc64el 2.12-4ubuntu10 [33.4 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main ppc64el libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main ppc64el libcap-ng0 ppc64el 0.7.9-1build1 [12.4 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main ppc64el libaudit1 ppc64el 1:2.8.3-1ubuntu3 [43.2 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libgpg-error0 ppc64el 1.32-3 [68.7 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libkmod2 ppc64el 25-1ubuntu1.1 [51.2 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el systemd ppc64el 239-7ubuntu10.1 [3505 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libsystemd0 ppc64el 239-7ubuntu10.1 [259 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el init ppc64el 1.55 [6480 B] Get:24 http://ftpmaster.internal/ubuntu disco/main ppc64el libquadmath0 ppc64el 8.2.0-9ubuntu1 [136 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main ppc64el libubsan1 ppc64el 8.2.0-9ubuntu1 [133 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main ppc64el libitm1 ppc64el 8.2.0-9ubuntu1 [29.3 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main ppc64el libasan5 ppc64el 8.2.0-9ubuntu1 [388 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main ppc64el gcc-8-base ppc64el 8.2.0-9ubuntu1 [18.6 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main ppc64el libstdc++6 ppc64el 8.2.0-9ubuntu1 [445 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main ppc64el libgomp1 ppc64el 8.2.0-9ubuntu1 [79.9 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main ppc64el libatomic1 ppc64el 8.2.0-9ubuntu1 [9868 B] Get:32 http://ftpmaster.internal/ubuntu disco/main ppc64el liblsan0 ppc64el 8.2.0-9ubuntu1 [144 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main ppc64el libtsan0 ppc64el 8.2.0-9ubuntu1 [296 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main ppc64el cpp-8 ppc64el 8.2.0-9ubuntu1 [6755 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main ppc64el libcc1-0 ppc64el 8.2.0-9ubuntu1 [40.8 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main ppc64el gcc-8 ppc64el 8.2.0-9ubuntu1 [7509 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main ppc64el g++-8 ppc64el 8.2.0-9ubuntu1 [7658 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main ppc64el libstdc++-8-dev ppc64el 8.2.0-9ubuntu1 [1592 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main ppc64el libgcc-8-dev ppc64el 8.2.0-9ubuntu1 [1213 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main ppc64el libgcc1 ppc64el 1:8.2.0-9ubuntu1 [30.3 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main ppc64el libbinutils ppc64el 2.31.1-7ubuntu1 [526 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main ppc64el binutils-common ppc64el 2.31.1-7ubuntu1 [194 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main ppc64el binutils ppc64el 2.31.1-7ubuntu1 [3392 B] Get:44 http://ftpmaster.internal/ubuntu disco/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.31.1-7ubuntu1 [2060 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main ppc64el libselinux1 ppc64el 2.8-1build2 [86.3 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main ppc64el libsemanage-common all 2.8-1build2 [6892 B] Get:47 http://ftpmaster.internal/ubuntu disco/main ppc64el libsemanage1 ppc64el 2.8-1build2 [97.8 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libudev1 ppc64el 239-7ubuntu10.1 [67.2 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libseccomp2 ppc64el 2.3.3-3ubuntu2 [51.5 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.145-4.1ubuntu4 [158 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el dmsetup ppc64el 2:1.02.145-4.1ubuntu4 [85.4 kB] Get:52 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libsqlite3-0 ppc64el 3.25.3-1 [562 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main ppc64el tzdata all 2018g-1 [188 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main ppc64el g++ ppc64el 4:8.2.0-2ubuntu2 [1604 B] Get:55 http://ftpmaster.internal/ubuntu disco/main ppc64el gcc ppc64el 4:8.2.0-2ubuntu2 [5236 B] Get:56 http://ftpmaster.internal/ubuntu disco/main ppc64el cpp ppc64el 4:8.2.0-2ubuntu2 [27.6 kB] Get:57 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el linux-libc-dev ppc64el 4.18.0-11.12 [1034 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main ppc64el lockfile-progs ppc64el 0.1.18 [10.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.5 MB in 1s (58.4 MB/s) (Reading database ... 12581 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_ppc64el.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12581 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_ppc64el.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12581 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_ppc64el.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12581 files and directories currently installed.) Preparing to unpack .../hostname_3.21_ppc64el.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12581 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_ppc64el.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 9 14:06:49 UTC 2018. Universal Time is now: Fri Nov 9 14:06:49 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up libtsan0:ppc64el (8.2.0-9ubuntu1) ... Setting up linux-libc-dev:ppc64el (4.18.0-11.12) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.145-4.1ubuntu4) ... Setting up liblsan0:ppc64el (8.2.0-9ubuntu1) ... Setting up libgdbm6:ppc64el (1.18.1-1) ... Setting up binutils-common:ppc64el (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:ppc64el (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:ppc64el (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:ppc64el (8.2.0-9ubuntu1) ... Setting up libitm1:ppc64el (8.2.0-9ubuntu1) ... Setting up libubsan1:ppc64el (8.2.0-9ubuntu1) ... Setting up libbinutils:ppc64el (2.31.1-7ubuntu1) ... Setting up libperl5.28:ppc64el (5.28.0-3) ... Setting up binutils-powerpc64le-linux-gnu (2.31.1-7ubuntu1) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:ppc64el (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:ppc64el (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15633979 ppc64el disco-proposed -c chroot:build-PACKAGEBUILD-15633979 --arch=ppc64el --dist=disco-proposed --nolog proda_1.0-12.dsc Initiating build PACKAGEBUILD-15633979 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:13:48 UTC 2018 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-016.buildd +==============================================================================+ | proda 1.0-12 (ppc64el) 09 Nov 2018 14:06 | +==============================================================================+ Package: proda Version: 1.0-12 Source Version: 1.0-12 Distribution: disco-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/proda-kbx_gp/proda-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/proda-kbx_gp' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15633979/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- proda_1.0-12.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Gz82he/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Gz82he/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Gz82he/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Gz82he/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Gz82he/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Gz82he/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (226 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Gz82he/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14469 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~) Filtered Build-Depends: debhelper (>= 11~) dpkg-deb: building package 'sbuild-build-depends-proda-dummy' in '/<>/resolver-qPq3Lq/apt_archive/sbuild-build-depends-proda-dummy.deb'. Ign:1 copy:/<>/resolver-qPq3Lq/apt_archive ./ InRelease Get:2 copy:/<>/resolver-qPq3Lq/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-qPq3Lq/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-qPq3Lq/apt_archive ./ Sources [209 B] Get:5 copy:/<>/resolver-qPq3Lq/apt_archive ./ Packages [527 B] Fetched 2855 B in 0s (247 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install proda build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libxml2 m4 man-db po-debconf sbuild-build-depends-proda-dummy 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 17.6 MB of archives. After this operation, 71.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-qPq3Lq/apt_archive ./ sbuild-build-depends-proda-dummy 0.invalid.0 [852 B] Get:2 http://ftpmaster.internal/ubuntu disco/main ppc64el libbsd0 ppc64el 0.9.1-1 [53.6 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main ppc64el groff-base ppc64el 1.22.3-10 [1468 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libpipeline1 ppc64el 1.5.0-2 [27.4 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el man-db ppc64el 2.8.4-3 [1057 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main ppc64el libmagic-mgc ppc64el 1:5.34-2 [197 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main ppc64el libmagic1 ppc64el 1:5.34-2 [89.8 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main ppc64el file ppc64el 1:5.34-2 [24.2 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main ppc64el libelf1 ppc64el 0.170-0.5.0ubuntu1 [52.0 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main ppc64el libglib2.0-0 ppc64el 2.58.1-2 [1301 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main ppc64el libicu60 ppc64el 60.2-6ubuntu1 [8350 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-7ubuntu2 [667 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main ppc64el gettext-base ppc64el 0.19.8.1-8 [52.7 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main ppc64el m4 ppc64el 1.4.18-1ubuntu1 [212 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main ppc64el autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el automake all 1:1.16.1-4 [522 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main ppc64el autopoint all 0.19.8.1-8 [412 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libtool all 2.4.6-6 [195 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main ppc64el libarchive-zip-perl all 1.64-1 [84.9 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el dh-strip-nondeterminism all 0.044-1 [5124 B] Get:26 http://ftpmaster.internal/ubuntu disco/main ppc64el dwz ppc64el 0.12-2 [83.3 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main ppc64el libcroco3 ppc64el 0.6.12-2 [82.5 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main ppc64el gettext ppc64el 0.19.8.1-8 [978 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main ppc64el po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main ppc64el debhelper all 11.3.2ubuntu1 [883 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.6 MB in 1s (13.2 MB/s) Selecting previously unselected package libbsd0:ppc64el. (Reading database ... 14469 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_ppc64el.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_ppc64el.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../03-libpipeline1_1.5.0-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-3_ppc64el.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_ppc64el.deb ... Unpacking libmagic-mgc (1:5.34-2) ... 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Preparing to unpack .../30-sbuild-build-depends-proda-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-proda-dummy (0.invalid.0) ... Setting up libicu60:ppc64el (60.2-6ubuntu1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up libelf1:ppc64el (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:ppc64el (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-8) ... Setting up libpipeline1:ppc64el (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:ppc64el (0.9.1-1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-7ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:ppc64el (1:5.34-2) ... Setting up libcroco3:ppc64el (0.6.12-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-8) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up gettext (0.19.8.1-8) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-proda-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 binutils-powerpc64le-linux-gnu_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-9ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-9ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libquadmath0_8.2.0-9ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-9ubuntu1 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu2 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proda-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Sep 18 17:09:36 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proda_1.0-12.dsc dpkg-source: info: extracting proda in proda-1.0 dpkg-source: info: unpacking proda_1.0.orig.tar.gz dpkg-source: info: unpacking proda_1.0-12.debian.tar.xz dpkg-source: info: applying 01-fix_gcc4.3_warnings.patch dpkg-source: info: applying 02-fix_CXXFLAGS.patch dpkg-source: info: applying 03-fix_FTBFS_gcc4.3_missing_includes.patch dpkg-source: info: applying 04-honour_CXX.patch dpkg-source: info: applying 05-fix_FTBFS_with_GCC6.patch dpkg-source: info: applying hardening.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15633979 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15633979 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15633979 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package proda dpkg-buildpackage: info: source version 1.0-12 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build proda-1.0 dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o AlignedFragment.o AlignedFragment.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Assert.o Assert.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Block.o Block.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Consistency.o Consistency.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o GlobalAlign.o GlobalAlign.cc In file included from Matrix.h:12, from GlobalAlign.h:11, from GlobalAlign.cc:7: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from Block.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Consistency.h:10, from Consistency.cc:5: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from Block.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Block.cc:9: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ Block.cc: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: Block.cc:58:36: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from GlobalAlign.h:11, from GlobalAlign.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from GlobalAlign.h:11, from GlobalAlign.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from GlobalAlign.h:11, from GlobalAlign.cc:7: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o LocalAlign.o LocalAlign.cc In file included from GlobalAlign.h:12, from GlobalAlign.cc:7: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Matrix.h:12, from LocalAlign.h:12, from LocalAlign.cc:5: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Main.o Main.cc In file included from ScoreMatrix.h:12, from Matrix.h:13, from LocalAlign.h:12, from LocalAlign.cc:5: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from LocalAlign.h:12, from LocalAlign.cc:5: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from LocalAlign.h:12, from LocalAlign.cc:5: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: AlignedFragment.h:66:66: warning: ‘best_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] {begin = f.begin; length = f.length; multiply = f.multiply;end = f.end;id = f.id;return *this;} ~~~~^~~~~~~ Block.cc:58:49: note: ‘best_end’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~~ Block.cc:130:13: warning: ‘bk’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ~~~~~~~~~~^~~ Block.cc:130:12: warning: ‘bfrag’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ^ In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h:61:68: warning: ‘best_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] { begin = start; end = e; multiply = mul; id = sid; length = end - begin + 1;} ~~~~^~~~~~~ Block.cc:58:20: note: ‘best_pos’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~~ In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h:66:77: warning: ‘best_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] {begin = f.begin; length = f.length; multiply = f.multiply;end = f.end;id = f.id;return *this;} ~~~^~~~~~ Block.cc:58:11: note: ‘best_id’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o PairAligner.o PairAligner.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Matrix.o Matrix.cc In file included from MultiSequence.h:12, from Main.cc:12: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Main.cc:12: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Main.cc:18: Tree.h:44:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ In file included from Matrix.h:12, from Matrix.cc:7: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from PairAligner.h:10, from PairAligner.cc:9: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ Main.cc: In function ‘void RunLocalAligner(int, char**)’: Main.cc:339:22: warning: ‘fasta’ may be used uninitialized in this function [-Wmaybe-uninitialized] seqs->WriteFASTA(fasta,block,result,start,end); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Matrix.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Matrix.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.cc:7: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ Matrix.cc: In member function ‘float Matrix::SumOfRow(int, int) const’: Matrix.cc:165:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ Matrix.cc:166:9: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] float *ptr; ^~~ Matrix.cc: In member function ‘float Matrix::SumOfColumn(int, int) const’: Matrix.cc:186:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o MultiSequence.o MultiSequence.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ProbModel.o ProbModel.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Score.o Score.cc In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ScoreMatrix.o ScoreMatrix.cc In file included from MultiSequence.h:12, from MultiSequence.cc:10: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from MultiSequence.cc:10: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ MultiSequence.cc:86:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetNumSequences() const { ^~~~~ MultiSequence.cc:94:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetLength() const { ^~~~~ MultiSequence.cc:130:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::AutoDetectFileFormat (const char *filename) const { ^~~~~ MultiSequence.cc:388:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char MultiSequence::ComputeAnnotation (const char *data, const int size) const { ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Sequence.o Sequence.cc In file included from ScoreMatrix.h:12, from ScoreMatrix.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from ScoreMatrix.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from ScoreMatrix.cc:8: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from ScoreMatrix.cc:8: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Sequence.cc:8: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ Sequence.cc:121:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetLength () const { ^~~~~ Sequence.cc:129:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetID () const { ^~~~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o SparseMatrix.o SparseMatrix.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Tree.o Tree.cc g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Utilities.o Utilities.cc Utilities.cc: In function ‘int GetData(FILE*, char*&, const char*, const char*)’: Utilities.cc:55:30: warning: comparison is always true due to limited range of data type [-Wtype-limits] while ((ch = fgetc (file)) != EOF){ ^ In file included from ScoreMatrix.h:12, from Matrix.h:13, from SparseMatrix.h:12, from SparseMatrix.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from SparseMatrix.h:12, from SparseMatrix.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12, from SparseMatrix.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ SparseMatrix.cc:199:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetRowSize (int layer, int row) const { ^~~~~ SparseMatrix.cc:209:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumLayers() const { ^~~~~ SparseMatrix.cc:217:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumRows() const { ^~~~~ SparseMatrix.cc:225:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumCols() const { ^~~~~ In file included from Matrix.h:12, from Tree.h:9, from Tree.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Tree.h:9, from Tree.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Tree.h:9, from Tree.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:9, from Tree.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:10, from Tree.cc:6: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Tree.cc:6: Tree.h:44:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ Tree.cc:34:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool Tree::TreeNode::GetIsLeaf() const { ^~~~~ Tree.cc:42:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Tree::TreeNode::GetNumSequences() const { ^~~~~ g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -lm AlignedFragment.o Assert.o Block.o Consistency.o GlobalAlign.o LocalAlign.o Main.o PairAligner.o Matrix.o MultiSequence.o ProbModel.o Score.o ScoreMatrix.o Sequence.o SparseMatrix.o Tree.o Utilities.o -o proda -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing proda-dbgsym (in debian/.debhelper/proda/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing proda (in debian/proda); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/proda/dbgsym-root/DEBIAN/control, package proda-dbgsym, directory debian/.debhelper/proda/dbgsym-root dpkg-deb: building package 'proda-dbgsym' in 'debian/.debhelper/scratch-space/build-proda/proda-dbgsym_1.0-12_ppc64el.deb'. Renaming proda-dbgsym_1.0-12_ppc64el.deb to proda-dbgsym_1.0-12_ppc64el.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/proda/DEBIAN/control, package proda, directory debian/proda pkgstripfiles: Truncating usr/share/doc/proda/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package proda ... pkgstripfiles: No PNG files. dpkg-deb: building package 'proda' in '../proda_1.0-12_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../proda_1.0-12_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build proda-1.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-1407 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ proda_1.0-12_ppc64el.changes: ----------------------------- Format: 1.8 Date: Tue, 18 Sep 2018 17:29:21 +0200 Source: proda Binary: proda Architecture: ppc64el Version: 1.0-12 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: proda - multiple alignment of protein sequences Changes: proda (1.0-12) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 2527c4721f44221a554fab40bbc194ae7ca39aa4 446572 proda-dbgsym_1.0-12_ppc64el.ddeb 54438393aa4dc355ac5c7e5c238b941ed559a71d 4809 proda_1.0-12_ppc64el.buildinfo 547a3884bb4561987945ac17372637ba4c87e8ba 82528 proda_1.0-12_ppc64el.deb Checksums-Sha256: fec68e18975b1779fb551ac6bd564db66b71357c8fd63b93b8d69c9029ecbf1b 446572 proda-dbgsym_1.0-12_ppc64el.ddeb d650fbd18b70ec36a4f2effc8ca0621735b95fafdf04c032858106ea7d0293f2 4809 proda_1.0-12_ppc64el.buildinfo c764bb7723f91eab3f47b620d4446b432e389845a5f01a29845ec1056fbe53d3 82528 proda_1.0-12_ppc64el.deb Files: 89695bd29274f29feecb172928298212 446572 debug optional proda-dbgsym_1.0-12_ppc64el.ddeb a50bba72a96ffd5993c0ea1f771bc4d5 4809 science optional proda_1.0-12_ppc64el.buildinfo de6bcf371757f91756f7872b1192225c 82528 science optional proda_1.0-12_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ proda_1.0-12_ppc64el.deb ------------------------ new debian package, version 2.0. size 82528 bytes: control archive=948 bytes. 766 bytes, 16 lines control 448 bytes, 7 lines md5sums Package: proda Version: 1.0-12 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 279 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libstdc++6 (>= 5) Section: science Priority: optional Homepage: http://proda.stanford.edu/ Description: multiple alignment of protein sequences ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions. drwxr-xr-x root/root 0 2018-09-18 15:29 ./ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/bin/ -rwxr-xr-x root/root 266192 2018-09-18 15:29 ./usr/bin/proda drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/doc/proda/ -rw-r--r-- root/root 179 2018-09-18 15:29 ./usr/share/doc/proda/README.test -rw-r--r-- root/root 1912 2018-09-18 15:29 ./usr/share/doc/proda/changelog.Debian.gz -rw-r--r-- root/root 893 2018-09-18 15:29 ./usr/share/doc/proda/copyright -rw-r--r-- root/root 1083 2018-09-18 15:29 ./usr/share/doc/proda/input.mfa -rw-r--r-- root/root 369 2018-09-18 15:29 ./usr/share/doc/proda/run-unit-test drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/man/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/man/man1/ -rw-r--r-- root/root 2335 2018-09-18 15:29 ./usr/share/man/man1/proda.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 7120 Build-Time: 15 Distribution: disco-proposed Host Architecture: ppc64el Install-Time: 9 Job: proda_1.0-12.dsc Machine Architecture: ppc64el Package: proda Package-Time: 25 Source-Version: 1.0-12 Space: 7120 Status: successful Version: 1.0-12 -------------------------------------------------------------------------------- Finished at 20181109-1407 Build needed 00:00:25, 7120k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-15633979 Scanning for processes to kill in build PACKAGEBUILD-15633979