https://launchpad.net/ubuntu/+source/proda/1.0-12/+build/15633980 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-006 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:07 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 13:39:44 ntpdate[1753]: adjust time server 10.211.37.1 offset 0.008243 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15633980 /home/buildd/filecache-default/b787115693f003366e910ff6bedae3977a7b9dc5 Creating target for build PACKAGEBUILD-15633980 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15633980 Starting target for build PACKAGEBUILD-15633980 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15633980 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15633980 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15633980 Updating target for build PACKAGEBUILD-15633980 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main s390x Packages [951 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe s390x Packages [8352 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5039 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main s390x Packages [114 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [72.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe s390x Packages [522 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [357 kB] Fetched 16.4 MB in 3s (4980 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-common binutils-s390x-linux-gnu cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 52 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 38.1 MB of archives. After this operation, 48.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main s390x base-files s390x 10.1ubuntu8 [60.0 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main s390x dash s390x 0.5.10.2-1 [86.9 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main s390x findutils s390x 4.6.0+git+20181018-1 [288 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main s390x hostname s390x 3.21 [10.9 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main s390x perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main s390x libgdbm6 s390x 1.18.1-1 [27.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main s390x libgdbm-compat4 s390x 1.18.1-1 [6256 B] Get:8 http://ftpmaster.internal/ubuntu disco/main s390x libperl5.28 s390x 5.28.0-3 [3655 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main s390x perl s390x 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main s390x perl-base s390x 5.28.0-3 [1418 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.2 [607 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main s390x sed s390x 4.5-2 [183 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main s390x init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main s390x systemd-sysv s390x 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main s390x libapparmor1 s390x 2.12-4ubuntu10 [28.6 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main s390x libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main s390x libcap-ng0 s390x 0.7.9-1build1 [10.6 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main s390x libaudit1 s390x 1:2.8.3-1ubuntu3 [37.0 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libgpg-error0 s390x 1.32-3 [52.3 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libkmod2 s390x 25-1ubuntu1.1 [37.9 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main s390x systemd s390x 239-7ubuntu10.1 [2666 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libsystemd0 s390x 239-7ubuntu10.1 [191 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main s390x init s390x 1.55 [6480 B] Get:24 http://ftpmaster.internal/ubuntu disco/main s390x libcc1-0 s390x 8.2.0-9ubuntu1 [37.1 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main s390x libgomp1 s390x 8.2.0-9ubuntu1 [69.9 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main s390x libitm1 s390x 8.2.0-9ubuntu1 [26.9 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main s390x libatomic1 s390x 8.2.0-9ubuntu1 [8428 B] Get:28 http://ftpmaster.internal/ubuntu disco/main s390x libasan5 s390x 8.2.0-9ubuntu1 [326 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main s390x libubsan1 s390x 8.2.0-9ubuntu1 [115 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main s390x gcc-8-base s390x 8.2.0-9ubuntu1 [18.6 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main s390x libstdc++6 s390x 8.2.0-9ubuntu1 [398 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main s390x g++-8 s390x 8.2.0-9ubuntu1 [6359 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main s390x libstdc++-8-dev s390x 8.2.0-9ubuntu1 [1503 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main s390x libgcc-8-dev s390x 8.2.0-9ubuntu1 [650 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main s390x gcc-8 s390x 8.2.0-9ubuntu1 [6264 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main s390x cpp-8 s390x 8.2.0-9ubuntu1 [5503 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main s390x libgcc1 s390x 1:8.2.0-9ubuntu1 [25.1 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main s390x libbinutils s390x 2.31.1-7ubuntu1 [304 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main s390x binutils-common s390x 2.31.1-7ubuntu1 [194 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main s390x binutils s390x 2.31.1-7ubuntu1 [3328 B] Get:41 http://ftpmaster.internal/ubuntu disco/main s390x binutils-s390x-linux-gnu s390x 2.31.1-7ubuntu1 [1678 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main s390x libselinux1 s390x 2.8-1build2 [63.8 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main s390x libsemanage-common all 2.8-1build2 [6892 B] Get:44 http://ftpmaster.internal/ubuntu disco/main s390x libsemanage1 s390x 2.8-1build2 [78.6 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libudev1 s390x 239-7ubuntu10.1 [49.7 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libseccomp2 s390x 2.3.3-3ubuntu2 [40.3 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libdevmapper1.02.1 s390x 2:1.02.145-4.1ubuntu4 [122 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main s390x dmsetup s390x 2:1.02.145-4.1ubuntu4 [73.0 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libsqlite3-0 s390x 3.25.3-1 [491 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main s390x tzdata all 2018g-1 [188 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main s390x g++ s390x 4:8.2.0-2ubuntu2 [1604 B] Get:52 http://ftpmaster.internal/ubuntu disco/main s390x gcc s390x 4:8.2.0-2ubuntu2 [5208 B] Get:53 http://ftpmaster.internal/ubuntu disco/main s390x cpp s390x 4:8.2.0-2ubuntu2 [27.6 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main s390x linux-libc-dev s390x 4.18.0-11.12 [1037 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main s390x lockfile-progs s390x 0.1.18 [9564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.1 MB in 1s (33.6 MB/s) (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_s390x.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_s390x.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_s390x.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../hostname_3.21_s390x.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_s390x.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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Preparing to unpack .../8-lockfile-progs_0.1.18_s390x.deb ... Unpacking lockfile-progs (0.1.18) over (0.1.17build1) ... Setting up cpp-8 (8.2.0-9ubuntu1) ... Setting up libgomp1:s390x (8.2.0-9ubuntu1) ... Setting up libatomic1:s390x (8.2.0-9ubuntu1) ... Setting up cpp (4:8.2.0-2ubuntu2) ... Setting up libcc1-0:s390x (8.2.0-9ubuntu1) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 9 13:40:00 UTC 2018. Universal Time is now: Fri Nov 9 13:40:00 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up linux-libc-dev:s390x (4.18.0-11.12) ... Setting up libdevmapper1.02.1:s390x (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm6:s390x (1.18.1-1) ... Setting up binutils-common:s390x (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:s390x (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:s390x (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:s390x (8.2.0-9ubuntu1) ... Setting up libitm1:s390x (8.2.0-9ubuntu1) ... Setting up libubsan1:s390x (8.2.0-9ubuntu1) ... Setting up libbinutils:s390x (2.31.1-7ubuntu1) ... Setting up libperl5.28:s390x (5.28.0-3) ... Setting up binutils-s390x-linux-gnu (2.31.1-7ubuntu1) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:s390x (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:s390x (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15633980 s390x disco-proposed -c chroot:build-PACKAGEBUILD-15633980 --arch=s390x --dist=disco-proposed --nolog proda_1.0-12.dsc Initiating build PACKAGEBUILD-15633980 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:07 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-006.buildd +==============================================================================+ | proda 1.0-12 (s390x) 09 Nov 2018 13:40 | +==============================================================================+ Package: proda Version: 1.0-12 Source Version: 1.0-12 Distribution: disco-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/proda-40CrkQ/proda-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/proda-40CrkQ' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15633980/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- proda_1.0-12.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-gBOPON/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-gBOPON/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gBOPON/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-gBOPON/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gBOPON/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-gBOPON/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-gBOPON/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14310 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~) Filtered Build-Depends: debhelper (>= 11~) dpkg-deb: building package 'sbuild-build-depends-proda-dummy' in '/<>/resolver-26Zrb4/apt_archive/sbuild-build-depends-proda-dummy.deb'. Ign:1 copy:/<>/resolver-26Zrb4/apt_archive ./ InRelease Get:2 copy:/<>/resolver-26Zrb4/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-26Zrb4/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-26Zrb4/apt_archive ./ Sources [209 B] Get:5 copy:/<>/resolver-26Zrb4/apt_archive ./ Packages [531 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install proda build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libxml2 m4 man-db po-debconf sbuild-build-depends-proda-dummy 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 16.3 MB of archives. After this operation, 63.9 MB of additional disk space will be used. Get:1 copy:/<>/resolver-26Zrb4/apt_archive ./ sbuild-build-depends-proda-dummy 0.invalid.0 [856 B] Get:2 http://ftpmaster.internal/ubuntu disco/main s390x libbsd0 s390x 0.9.1-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libpipeline1 s390x 1.5.0-2 [24.4 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main s390x man-db s390x 2.8.4-3 [1016 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main s390x libmagic-mgc s390x 1:5.34-2 [197 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main s390x libmagic1 s390x 1:5.34-2 [69.0 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main s390x file s390x 1:5.34-2 [22.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main s390x libelf1 s390x 0.170-0.5.0ubuntu1 [41.2 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main s390x libglib2.0-0 s390x 2.58.1-2 [1085 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main s390x libicu60 s390x 60.2-6ubuntu1 [7837 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main s390x libxml2 s390x 2.9.4+dfsg1-7ubuntu2 [553 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main s390x gettext-base s390x 0.19.8.1-8 [48.1 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main s390x m4 s390x 1.4.18-1ubuntu1 [194 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main s390x autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main s390x automake all 1:1.16.1-4 [522 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main s390x autopoint all 0.19.8.1-8 [412 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libtool all 2.4.6-6 [195 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main s390x dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main s390x libarchive-zip-perl all 1.64-1 [84.9 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main s390x dh-strip-nondeterminism all 0.044-1 [5124 B] Get:26 http://ftpmaster.internal/ubuntu disco/main s390x dwz s390x 0.12-2 [73.2 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main s390x gettext s390x 0.19.8.1-8 [857 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main s390x po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main s390x debhelper all 11.3.2ubuntu1 [883 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.3 MB in 0s (35.4 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 14310 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_s390x.deb ... Unpacking libbsd0:s390x (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_s390x.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.0-2_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-3_s390x.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_s390x.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:s390x. 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Setting up libicu60:s390x (60.2-6ubuntu1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up libelf1:s390x (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:s390x (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-8) ... Setting up libpipeline1:s390x (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:s390x (0.9.1-1) ... Setting up libxml2:s390x (2.9.4+dfsg1-7ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:s390x (1:5.34-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-8) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up gettext (0.19.8.1-8) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-proda-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic s390x (s390x) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 binutils-s390x-linux-gnu_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-9ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu2 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proda-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Sep 18 17:09:36 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proda_1.0-12.dsc dpkg-source: info: extracting proda in proda-1.0 dpkg-source: info: unpacking proda_1.0.orig.tar.gz dpkg-source: info: unpacking proda_1.0-12.debian.tar.xz dpkg-source: info: applying 01-fix_gcc4.3_warnings.patch dpkg-source: info: applying 02-fix_CXXFLAGS.patch dpkg-source: info: applying 03-fix_FTBFS_gcc4.3_missing_includes.patch dpkg-source: info: applying 04-honour_CXX.patch dpkg-source: info: applying 05-fix_FTBFS_with_GCC6.patch dpkg-source: info: applying hardening.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15633980 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15633980 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15633980 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package proda dpkg-buildpackage: info: source version 1.0-12 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build proda-1.0 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o AlignedFragment.o AlignedFragment.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Assert.o Assert.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Block.o Block.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Consistency.o Consistency.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o GlobalAlign.o GlobalAlign.cc In file included from Matrix.h:12, from GlobalAlign.h:11, from GlobalAlign.cc:7: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from Block.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from Block.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Block.cc:9: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ Block.cc: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: Block.cc:58:36: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12, from Consistency.h:10, from Consistency.cc:5: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Consistency.h:10, from Consistency.cc:5: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from GlobalAlign.h:11, from GlobalAlign.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from GlobalAlign.h:11, from GlobalAlign.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from GlobalAlign.h:11, from GlobalAlign.cc:7: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from GlobalAlign.h:12, from GlobalAlign.cc:7: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o LocalAlign.o LocalAlign.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Main.o Main.cc In file included from Matrix.h:12, from LocalAlign.h:12, from LocalAlign.cc:5: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o PairAligner.o PairAligner.cc In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h: In constructor ‘Block::Block(std::vector&, MultiSequence*, bool, Block*)’: AlignedFragment.h:66:66: warning: ‘best_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] {begin = f.begin; length = f.length; multiply = f.multiply;end = f.end;id = f.id;return *this;} ~~~~^~~~~~~ Block.cc:58:49: note: ‘best_end’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~~ Block.cc:130:13: warning: ‘bk’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ~~~~~~~~~~^~~ Block.cc:130:12: warning: ‘bfrag’ may be used uninitialized in this function [-Wmaybe-uninitialized] bad[bfrag]=bk; ^ In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h:61:68: warning: ‘best_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] { begin = start; end = e; multiply = mul; id = sid; length = end - begin + 1;} ~~~~^~~~~~~ Block.cc:58:20: note: ‘best_pos’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~~ In file included from Sequence.h:11, from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from Block.h:10, from Block.cc:6: AlignedFragment.h:66:77: warning: ‘best_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] {begin = f.begin; length = f.length; multiply = f.multiply;end = f.end;id = f.id;return *this;} ~~~^~~~~~ Block.cc:58:11: note: ‘best_id’ was declared here int best,best_id, best_pos, multi,end,bfrag,bk,best_end; ^~~~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from LocalAlign.h:12, from LocalAlign.cc:5: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from LocalAlign.h:12, from LocalAlign.cc:5: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from LocalAlign.h:12, from LocalAlign.cc:5: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from MultiSequence.h:12, from Main.cc:12: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from MultiSequence.h:13, from Main.cc:12: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Main.cc:12: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Main.cc:18: Tree.h:44:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ In file included from PairAligner.h:10, from PairAligner.cc:9: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from PairAligner.h:11, from PairAligner.cc:9: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Matrix.o Matrix.cc Main.cc: In function ‘void RunLocalAligner(int, char**)’: Main.cc:339:22: warning: ‘fasta’ may be used uninitialized in this function [-Wmaybe-uninitialized] seqs->WriteFASTA(fasta,block,result,start,end); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Matrix.h:12, from Matrix.cc:7: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o MultiSequence.o MultiSequence.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ProbModel.o ProbModel.cc In file included from ScoreMatrix.h:12, from Matrix.h:13, from Matrix.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Matrix.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.cc:7: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ Matrix.cc: In member function ‘float Matrix::SumOfRow(int, int) const’: Matrix.cc:165:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ Matrix.cc:166:9: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] float *ptr; ^~~ Matrix.cc: In member function ‘float Matrix::SumOfColumn(int, int) const’: Matrix.cc:186:6: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] int pos = 0; ^~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Score.o Score.cc In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o ScoreMatrix.o ScoreMatrix.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Sequence.o Sequence.cc In file included from MultiSequence.h:12, from MultiSequence.cc:10: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:12, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from Block.h:10, from MultiSequence.h:13, from MultiSequence.cc:10: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from MultiSequence.cc:10: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ MultiSequence.cc:86:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetNumSequences() const { ^~~~~ MultiSequence.cc:94:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::GetLength() const { ^~~~~ MultiSequence.cc:130:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int MultiSequence::AutoDetectFileFormat (const char *filename) const { ^~~~~ MultiSequence.cc:388:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char MultiSequence::ComputeAnnotation (const char *data, const int size) const { ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from ProbModel.cc:8: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Sequence.cc:8: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ Sequence.cc:121:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetLength () const { ^~~~~ Sequence.cc:129:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Sequence::GetID () const { ^~~~~ In file included from ScoreMatrix.h:12, from ScoreMatrix.cc:7: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from ScoreMatrix.cc:7: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Matrix.h:12, from Types.h:12, from ProbModel.h:11, from ScoreMatrix.cc:8: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from Types.h:12, from ProbModel.h:11, from ScoreMatrix.cc:8: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o SparseMatrix.o SparseMatrix.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Tree.o Tree.cc g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -c -o Utilities.o Utilities.cc Utilities.cc: In function ‘int GetData(FILE*, char*&, const char*, const char*)’: Utilities.cc:55:30: warning: comparison is always true due to limited range of data type [-Wtype-limits] while ((ch = fgetc (file)) != EOF){ ^ In file included from Matrix.h:12, from Tree.h:9, from Tree.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from SparseMatrix.h:12, from SparseMatrix.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from SparseMatrix.h:12, from SparseMatrix.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.h:12, from SparseMatrix.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from SparseMatrix.cc:6: SparseMatrix.h:57:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetRowSize (int layer, int row) const; ^~~~~ SparseMatrix.h:60:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const; ^~~~~ SparseMatrix.h:61:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const; ^~~~~ SparseMatrix.h:62:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const; ^~~~~ SparseMatrix.cc:199:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetRowSize (int layer, int row) const { ^~~~~ SparseMatrix.cc:209:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumLayers() const { ^~~~~ SparseMatrix.cc:217:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumRows() const { ^~~~~ SparseMatrix.cc:225:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int SparseMatrix::GetNumCols() const { ^~~~~ In file included from ScoreMatrix.h:12, from Matrix.h:13, from Tree.h:9, from Tree.cc:6: Sequence.h:51:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength () const; ^~~~~ Sequence.h:52:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetID () const; ^~~~~ In file included from Matrix.h:13, from Tree.h:9, from Tree.cc:6: ScoreMatrix.h:88:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ ScoreMatrix.h:96:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ ScoreMatrix.h:104:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:9, from Tree.cc:6: Matrix.h:100:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumLayers() const { ^~~~~ Matrix.h:108:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumRows() const { ^~~~~ Matrix.h:116:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumCols() const { ^~~~~ In file included from Tree.h:10, from Tree.cc:6: MultiSequence.h:24:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int AutoDetectFileFormat (const char *filename) const; ^~~~~ MultiSequence.h:28:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const char ComputeAnnotation (const char *data, const int size) const; ^~~~~ MultiSequence.h:48:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ MultiSequence.h:49:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetLength() const; ^~~~~ In file included from Tree.cc:6: Tree.h:44:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool GetIsLeaf() const; ^~~~~ Tree.h:45:5: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int GetNumSequences() const; ^~~~~ Tree.cc:34:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const bool Tree::TreeNode::GetIsLeaf() const { ^~~~~ Tree.cc:42:1: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] const int Tree::TreeNode::GetNumSequences() const { ^~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -W -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -lm AlignedFragment.o Assert.o Block.o Consistency.o GlobalAlign.o LocalAlign.o Main.o PairAligner.o Matrix.o MultiSequence.o ProbModel.o Score.o ScoreMatrix.o Sequence.o SparseMatrix.o Tree.o Utilities.o -o proda -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing proda (in debian/proda); do_strip: , oemstrip: pkgstriptranslations: processing proda-dbgsym (in debian/.debhelper/proda/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/proda/DEBIAN/control, package proda, directory debian/proda pkgstripfiles: processing control file: debian/.debhelper/proda/dbgsym-root/DEBIAN/control, package proda-dbgsym, directory debian/.debhelper/proda/dbgsym-root dpkg-deb: building package 'proda-dbgsym' in 'debian/.debhelper/scratch-space/build-proda/proda-dbgsym_1.0-12_s390x.deb'. pkgstripfiles: Truncating usr/share/doc/proda/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package proda ... pkgstripfiles: No PNG files. dpkg-deb: building package 'proda' in '../proda_1.0-12_s390x.deb'. Renaming proda-dbgsym_1.0-12_s390x.deb to proda-dbgsym_1.0-12_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../proda_1.0-12_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build proda-1.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-1340 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ proda_1.0-12_s390x.changes: --------------------------- Format: 1.8 Date: Tue, 18 Sep 2018 17:29:21 +0200 Source: proda Binary: proda Architecture: s390x Version: 1.0-12 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: proda - multiple alignment of protein sequences Changes: proda (1.0-12) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 668720977f84c6877683bc81b4242a28b0de5a32 397296 proda-dbgsym_1.0-12_s390x.ddeb b1dfb987379ceb658096e7467a4466b902aca745 4693 proda_1.0-12_s390x.buildinfo 0e3a3cd4a115cdd0d38d6022e991ac57f9ad00c0 58520 proda_1.0-12_s390x.deb Checksums-Sha256: 6b1cef3cd522677387a10e6d70fee57c4724b09a84baa48a3fef63a6ad64408f 397296 proda-dbgsym_1.0-12_s390x.ddeb 1df9d8311ec7c13b01b79741c14a29276a153d0a9818c72a847c2aca27d1aef1 4693 proda_1.0-12_s390x.buildinfo 5c0730fe9f65053f28cb67a0cff538f1ea4d475c0c5dba22c67fe4b29d69bb8d 58520 proda_1.0-12_s390x.deb Files: 8ee86bb37e0e2b9d7bf6cdba2fca7ec1 397296 debug optional proda-dbgsym_1.0-12_s390x.ddeb b75a4a7c7da4af034af4cf928394e331 4693 science optional proda_1.0-12_s390x.buildinfo 458d84517481124f5a99b8ded3ca95ad 58520 science optional proda_1.0-12_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ proda_1.0-12_s390x.deb ---------------------- new debian package, version 2.0. size 58520 bytes: control archive=944 bytes. 764 bytes, 16 lines control 448 bytes, 7 lines md5sums Package: proda Version: 1.0-12 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 159 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libstdc++6 (>= 5) Section: science Priority: optional Homepage: http://proda.stanford.edu/ Description: multiple alignment of protein sequences ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions. drwxr-xr-x root/root 0 2018-09-18 15:29 ./ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/bin/ -rwxr-xr-x root/root 143208 2018-09-18 15:29 ./usr/bin/proda drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/doc/proda/ -rw-r--r-- root/root 179 2018-09-18 15:29 ./usr/share/doc/proda/README.test -rw-r--r-- root/root 1912 2018-09-18 15:29 ./usr/share/doc/proda/changelog.Debian.gz -rw-r--r-- root/root 893 2018-09-18 15:29 ./usr/share/doc/proda/copyright -rw-r--r-- root/root 1083 2018-09-18 15:29 ./usr/share/doc/proda/input.mfa -rw-r--r-- root/root 369 2018-09-18 15:29 ./usr/share/doc/proda/run-unit-test drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/man/ drwxr-xr-x root/root 0 2018-09-18 15:29 ./usr/share/man/man1/ -rw-r--r-- root/root 2335 2018-09-18 15:29 ./usr/share/man/man1/proda.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 5720 Build-Time: 6 Distribution: disco-proposed Host Architecture: s390x Install-Time: 6 Job: proda_1.0-12.dsc Machine Architecture: s390x Package: proda Package-Time: 12 Source-Version: 1.0-12 Space: 5720 Status: successful Version: 1.0-12 -------------------------------------------------------------------------------- Finished at 20181109-1340 Build needed 00:00:12, 5720k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15633980 Scanning for processes to kill in build PACKAGEBUILD-15633980