https://launchpad.net/ubuntu/+source/prodigal/1:2.6.3-4/+build/19109362 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-032 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 7 Apr 08:53:03 ntpdate[95094]: adjust time server 10.211.37.1 offset 0.000015 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19109362 --image-type chroot /home/buildd/filecache-default/88ad86cb2b525f1abddded96eadf8014548f7845 Creating target for build PACKAGEBUILD-19109362 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19109362 Starting target for build PACKAGEBUILD-19109362 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19109362 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-19109362 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19109362 Updating target for build PACKAGEBUILD-19109362 Ign:1 http://archive-team.internal/bootstrap/riscv64 focal InRelease Get:2 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal Release [754 B] Ign:4 http://archive-team.internal/bootstrap/riscv64 focal Release.gpg Get:5 http://ftpmaster.internal/ubuntu focal-proposed InRelease [265 kB] Get:6 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 Packages [67.1 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 Packages [841 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:9 http://ftpmaster.internal/ubuntu focal/universe riscv64 Packages [6943 kB] Get:10 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5128 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 Packages [37.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [32.9 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/restricted Translation-en [1464 B] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 Packages [145 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [120 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/multiverse riscv64 Packages [1140 B] Fetched 14.3 MB in 28s (522 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt coreutils cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base libapt-pkg6.0 libc-bin libc-dev-bin libc6 libc6-dev libgcc-9-dev libgnutls30 liblocale-gettext-perl libperl5.30 libstdc++-9-dev libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 linux-libc-dev login passwd perl-base 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 41.5 MB of archives. After this operation, 321 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu focal/main riscv64 coreutils riscv64 8.30-3ubuntu2 [1158 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 login riscv64 1:4.8.1-1ubuntu4 [216 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 perl-base riscv64 5.30.0-9build1 [1419 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6-dev riscv64 2.31-0ubuntu7 [3659 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-dev-bin riscv64 2.31-0ubuntu7 [62.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 linux-libc-dev riscv64 5.4.0-23.27 [1089 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6 riscv64 2.31-0ubuntu7 [2272 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-bin riscv64 2.31-0ubuntu7 [505 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libsystemd0 riscv64 245.2-1ubuntu3 [242 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libudev1 riscv64 245.2-1ubuntu3 [69.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libapt-pkg6.0 riscv64 2.0.1ubuntu1 [797 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 libgnutls30 riscv64 3.6.13-2ubuntu1 [720 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 apt riscv64 2.0.1ubuntu1 [1231 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 liblocale-gettext-perl riscv64 1.07-4 [16.5 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 passwd riscv64 1:4.8.1-1ubuntu4 [752 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-charwidth-perl riscv64 0.04-10 [9460 B] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-iconv-perl riscv64 1.7-7 [13.2 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 g++-9 riscv64 9.3.0-10ubuntu1 [6926 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9 riscv64 9.3.0-10ubuntu1 [6788 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 libstdc++-9-dev riscv64 9.3.0-10ubuntu1 [3649 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 libgcc-9-dev riscv64 9.3.0-10ubuntu1 [404 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 cpp-9 riscv64 9.3.0-10ubuntu1 [6046 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9-base riscv64 9.3.0-10ubuntu1 [19.2 kB] Get:24 http://ftpmaster.internal/ubuntu focal/universe riscv64 gcc-8-base riscv64 8.4.0-3ubuntu2 [18.4 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main riscv64 libperl5.30 riscv64 5.30.0-9build1 [3422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.5 MB in 8s (5307 kB/s) (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_riscv64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu2) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu4_riscv64.deb ... Unpacking login (1:4.8.1-1ubuntu4) over (1:4.8.1-1ubuntu3) ... Setting up login (1:4.8.1-1ubuntu4) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-9build1_riscv64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc-dev-bin_2.31-0ubuntu7_riscv64.deb ... 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Preparing to unpack .../libudev1_245.2-1ubuntu3_riscv64.deb ... Unpacking libudev1:riscv64 (245.2-1ubuntu3) over (244.3-1ubuntu1) ... Setting up libudev1:riscv64 (245.2-1ubuntu3) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.0.1ubuntu1_riscv64.deb ... Unpacking libapt-pkg6.0:riscv64 (2.0.1ubuntu1) over (2.0.1) ... Setting up libapt-pkg6.0:riscv64 (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.13-2ubuntu1_riscv64.deb ... Unpacking libgnutls30:riscv64 (3.6.13-2ubuntu1) over (3.6.11.1-2ubuntu2) ... Setting up libgnutls30:riscv64 (3.6.13-2ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../apt_2.0.1ubuntu1_riscv64.deb ... Unpacking apt (2.0.1ubuntu1) over (2.0.1) ... Setting up apt (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-4) over (1.07-4) ... Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu4_riscv64.deb ... Unpacking passwd (1:4.8.1-1ubuntu4) over (1:4.8.1-1ubuntu3) ... Setting up passwd (1:4.8.1-1ubuntu4) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../0-libtext-charwidth-perl_0.04-10_riscv64.deb ... Unpacking libtext-charwidth-perl (0.04-10) over (0.04-10) ... Preparing to unpack .../1-libtext-iconv-perl_1.7-7_riscv64.deb ... Unpacking libtext-iconv-perl (1.7-7) over (1.7-7) ... Preparing to unpack .../2-g++-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking g++-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../3-gcc-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking gcc-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../4-libstdc++-9-dev_9.3.0-10ubuntu1_riscv64.deb ... Unpacking libstdc++-9-dev:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../5-libgcc-9-dev_9.3.0-10ubuntu1_riscv64.deb ... Unpacking libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../6-cpp-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking cpp-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../7-gcc-9-base_9.3.0-10ubuntu1_riscv64.deb ... Unpacking gcc-9-base:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../8-gcc-8-base_8.4.0-3ubuntu2_riscv64.deb ... Unpacking gcc-8-base:riscv64 (8.4.0-3ubuntu2) over (8.4.0-3ubuntu1) ... Preparing to unpack .../9-libperl5.30_5.30.0-9build1_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-9build1) over (5.30.0-9build1) ... Setting up libtext-iconv-perl (1.7-7) ... Setting up libtext-charwidth-perl (0.04-10) ... Setting up linux-libc-dev:riscv64 (5.4.0-23.27) ... Setting up gcc-8-base:riscv64 (8.4.0-3ubuntu2) ... Setting up libperl5.30:riscv64 (5.30.0-9build1) ... Setting up libc-dev-bin (2.31-0ubuntu7) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:riscv64 (9.3.0-10ubuntu1) ... Setting up libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up cpp-9 (9.3.0-10ubuntu1) ... Setting up libc6-dev:riscv64 (2.31-0ubuntu7) ... Setting up gcc-9 (9.3.0-10ubuntu1) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up g++-9 (9.3.0-10ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19109362 riscv64 focal -c chroot:build-PACKAGEBUILD-19109362 --arch=riscv64 --dist=focal --nolog prodigal_2.6.3-4.dsc Initiating build PACKAGEBUILD-19109362 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-032 +==============================================================================+ | prodigal 1:2.6.3-4 (riscv64) Tue, 07 Apr 2020 08:56:45 +0000 | +==============================================================================+ Package: prodigal Version: 1:2.6.3-4 Source Version: 1:2.6.3-4 Distribution: focal Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19109362/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/prodigal-K071UQ/resolver-m32mVw' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- prodigal_2.6.3-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/prodigal-K071UQ/prodigal-2.6.3' with '<>' I: NOTICE: Log filtering will replace 'build/prodigal-K071UQ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), build-essential, fakeroot Filtered Build-Depends: debhelper (>= 11~), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [367 B] Get:5 copy:/<>/apt_archive ./ Packages [452 B] Fetched 1776 B in 0s (4653 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy tzdata 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 17.0 MB of archives. After this operation, 67.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [872 B] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 libglib2.0-0 riscv64 2.64.1-1 [1122 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 libxml2 riscv64 2.9.10+dfsg-4build1 [558 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libtool all 2.4.6-14 [161 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:28 http://ftpmaster.internal/ubuntu focal/main riscv64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:30 http://ftpmaster.internal/ubuntu focal/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 po-debconf all 1.0.21 [233 kB] Get:35 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 debhelper all 12.10ubuntu1 [877 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.0 MB in 4s (4346 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 9816 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4build1_riscv64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_riscv64.deb ... 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Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:riscv64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 7 08:58:24 UTC 2020. Universal Time is now: Tue Apr 7 08:58:24 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-14) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 (riscv64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-10ubuntu1 gcc-9_9.3.0-10ubuntu1 libc6-dev_2.31-0ubuntu7 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 linux-libc-dev_5.4.0-23.27 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.1ubuntu1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-riscv64-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-10ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-10ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200324-1ubuntu1 gcc-8-base_8.4.0-3ubuntu2 gcc-9_9.3.0-10ubuntu1 gcc-9-base_9.3.0-10ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg6.0_2.0.1ubuntu1 libarchive-zip-perl_1.67-2 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200324-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblkid1_2.34-0.1ubuntu8 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu7 libc-dev-bin_2.31-0ubuntu7 libc6_2.31-0ubuntu7 libc6-dev_2.31-0ubuntu7 libcap-ng0_0.7.9-2.1build1 libcc1-0_10-20200324-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.10ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-10ubuntu1 libgcc-s1_10-20200324-1ubuntu1 libgcc1_1:10-20200324-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200324-1ubuntu1 libgpg-error0_1.37-1 libgpm2_1.20.7-5 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-0ubuntu2 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libreadline8_8.0-4 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu3 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-14 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-23.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu4 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu4 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: prodigal Binary: prodigal Architecture: any Version: 1:2.6.3-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://prodigal.ornl.gov/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/prodigal Vcs-Git: https://salsa.debian.org/med-team/prodigal.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: prodigal deb science optional arch=any Checksums-Sha1: 1259e999193cd0c095935baebfb8bcb0233e850f 610934 prodigal_2.6.3.orig.tar.gz 77dac85040ea5fda608178b53077660f7cd327f6 48980 prodigal_2.6.3-4.debian.tar.xz Checksums-Sha256: 89094ad4bff5a8a8732d899f31cec350f5a4c27bcbdd12663f87c9d1f0ec599f 610934 prodigal_2.6.3.orig.tar.gz 6811039b7d08434f3458411c2b061bbd0dc23038f1ef60897d259eab0f098a4b 48980 prodigal_2.6.3-4.debian.tar.xz Files: 5181809fdb740e9a675cfdbb6c038466 610934 prodigal_2.6.3.orig.tar.gz d84f39f9a0c64a3036b8263e8ca1be38 48980 prodigal_2.6.3-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlrMtpURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGEKw/+ItIU2GkN+APyX3T5ZloAYH21FvkZ+UaW b7ofPlQulFaojEjVqkEyD8MpLDZ7edPVSaqiJc81YSe21XmSQMKcDnjXaiMTwReF P64sL9dDBfxdCTDt6QXASePYsU0D4NdHZ9tf+yOVXTumOb5p9o2s39Nwk0sVYMy9 KOWG4JfKD30wFHuPG8tkpydaXnnxXu+i85UxAW0DczHHM2NPp7StRZjyBvtAJEPu YbWbvVvna+mRn3IIGsn7uJeq7L8wLxnDSmGUe6UGVPTD683To3t9emYHbJr2peP8 RV+gz1vXK1Xw6T7SkDA0Abtih051ngef7P9xMMFcCkiW7bqBqdTYn0OQ1Xe2dADG RC4VjoFTXfwfKCp8FKHQwT7+Lvk1AAA31CgU+M1GdrG6sLkgOC6jE5h+ER9Hxsgc +NxUIpLyGLzUlyt7Uj52e+BG70xUwtY33Kc59mM49qWl5aOmk+YcaSpLrNZsGnG7 n9SMiui3nwl/CDPXhc23VhSK/Fn0hmUCRps55oCWNm4lq5H+ODWoxE+E+8lSHx3n uY4DI2BmXRAEGqkMKfCD/+BBfgxBEUCPohrkNXnrYchxgW6Wh4J2ZKiWPT3629s0 CPGb+oHnBuUxn5uM3U8YlAdsHtHqc4fgGnw3rrRG6A/7KphpC7UVCoJu5WS+RNjC QSGuSxlM3Hs= =3cTP -----END PGP SIGNATURE----- gpgv: Signature made Tue Apr 10 13:05:25 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./prodigal_2.6.3-4.dsc dpkg-source: info: extracting prodigal in /<> dpkg-source: info: unpacking prodigal_2.6.3.orig.tar.gz dpkg-source: info: unpacking prodigal_2.6.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_hardcoded_O3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19109362 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19109362 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19109362 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package prodigal dpkg-buildpackage: info: source version 1:2.6.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean dh clean dh_auto_clean make -j4 distclean make[1]: Entering directory '/<>' rm -f bitmap.o dprog.o gene.o main.o metagenomic.o node.o sequence.o training.o rm -f prodigal make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f prodigal.1 make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o bitmap.o bitmap.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o dprog.o dprog.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o gene.o gene.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o main.o main.c gene.c: In function ‘record_gene_data’: gene.c:286:25: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 286 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ~~~~~~~~^~~~~~~~~~ 287 | genes[i].gene_data, sd_string[nod[ndx].rbs[0]], | ~~~~~~~~~~~~~~~~~~ gene.c:290:25: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 290 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ~~~~~~~~^~~~~~~~~~ 291 | genes[i].gene_data, sd_string[nod[ndx].rbs[1]], | ~~~~~~~~~~~~~~~~~~ gene.c:298:25: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 298 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ~~~~~~~~^~~~~~~~~~ 299 | genes[i].gene_data, sd_string[nod[ndx].rbs[0]], | ~~~~~~~~~~~~~~~~~~ gene.c:303:25: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 303 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ~~~~~~~~^~~~~~~~~~ 304 | genes[i].gene_data, sd_string[nod[ndx].rbs[1]], | ~~~~~~~~~~~~~~~~~~ gene.c:307:25: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 307 | sprintf(genes[i].gene_data, "%srbs_motif=None;rbs_spacer=None", | ~~~~~~~~^~~~~~~~~~ 308 | genes[i].gene_data); | ~~~~~~~~~~~~~~~~~~ gene.c:309:28: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 309 | else sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%dbp", | ~~~~~~~~^~~~~~~~~~ 310 | genes[i].gene_data, qt, nod[ndx].mot.spacer); | ~~~~~~~~~~~~~~~~~~ gene.c:312:21: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 312 | sprintf(genes[i].gene_data, "%s;gc_cont=%.3f", genes[i].gene_data, | ~~~~~~~~^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ gene.c:322:21: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 322 | sprintf(genes[i].score_data, "%stscore=%.2f;", genes[i].score_data, | ~~~~~~~~^~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~ gene.c: In function ‘print_genes’: gene.c:343:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 343 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~ ~~~~~~~~ gene.c:347:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 347 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~ ~~~~~~~~ gene.c:349:11: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 349 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~ ~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o metagenomic.o metagenomic.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o node.o node.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o sequence.o sequence.c node.c: In function ‘write_start_file’: node.c:1422:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 1422 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~ ~~~~~~~~ node.c:1426:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 1426 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~ ~~~~~~~~ node.c:1428:11: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 1428 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~ ~~~~~~~~ gene.c:347:26: warning: ‘model="’ directive writing 7 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 347 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from gene.h:24, from gene.c:21: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 10009) into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:343:26: warning: ‘model="Ab initio";’ directive writing 18 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 343 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from gene.h:24, from gene.c:21: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 10018 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:349:24: warning: ‘gc_cont=’ directive writing 8 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 349 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~ gene.c:349:21: note: assuming directive output of 4 bytes 349 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from gene.h:24, from gene.c:21: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 37 and 10366 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o training.o training.c node.c:1426:26: warning: ‘model="’ directive writing 7 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 1426 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from node.h:24, from node.c:21: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 10009) into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ node.c:1422:26: warning: ‘model="Ab initio";’ directive writing 18 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 1422 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from node.h:24, from node.c:21: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 10018 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ node.c:1428:24: warning: ‘gc_cont=’ directive writing 8 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 1428 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~ node.c:1428:21: note: assuming directive output of 4 bytes 1428 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from node.h:24, from node.c:21: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 37 and 10366 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -o prodigal bitmap.o dprog.o gene.o main.o metagenomic.o node.o sequence.o training.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' echo "Do not try to install to /usr/local" Do not try to install to /usr/local make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing prodigal-dbgsym (in debian/.debhelper/prodigal/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing prodigal (in debian/prodigal); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/prodigal/dbgsym-root/DEBIAN/control, package prodigal-dbgsym, directory debian/.debhelper/prodigal/dbgsym-root dpkg-deb: building package 'prodigal-dbgsym' in 'debian/.debhelper/scratch-space/build-prodigal/prodigal-dbgsym_2.6.3-4_riscv64.deb'. pkgstripfiles: processing control file: debian/prodigal/DEBIAN/control, package prodigal, directory debian/prodigal pkgstripfiles: Running PNG optimization (using 4 cpus) for package prodigal ... pkgstripfiles: No PNG files. dpkg-deb: building package 'prodigal' in '../prodigal_2.6.3-4_riscv64.deb'. Renaming prodigal-dbgsym_2.6.3-4_riscv64.deb to prodigal-dbgsym_2.6.3-4_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../prodigal_2.6.3-4_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-07T18:18:38Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ prodigal_2.6.3-4_riscv64.changes: --------------------------------- Format: 1.8 Date: Tue, 10 Apr 2018 14:58:10 +0200 Source: prodigal Binary: prodigal Architecture: riscv64 Version: 1:2.6.3-4 Distribution: focal Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: prodigal - Microbial (bacterial and archaeal) gene finding program Closes: 894473 Changes: prodigal (1:2.6.3-4) unstable; urgency=medium . * Finalise the fix proposed by Adrian Bunk Closes: #894473 Checksums-Sha1: 8b82515d712b720a5af5193791191081f80058a6 111552 prodigal-dbgsym_2.6.3-4_riscv64.ddeb e11d4875da548bba37f70b5a2ee49fc2b69aa747 4969 prodigal_2.6.3-4_riscv64.buildinfo bd87d22e46a47e24f608307ac6a8f5d6a6cf167d 1131460 prodigal_2.6.3-4_riscv64.deb Checksums-Sha256: 1c323e3600e511800cb5d25799c6c7b081cab90f5d1e8df74b4363d34c7e58b8 111552 prodigal-dbgsym_2.6.3-4_riscv64.ddeb 0964db88738f08dc51c7717d1429e0d12a5010423642f442fb1ae60c3bf5f21b 4969 prodigal_2.6.3-4_riscv64.buildinfo 1b07f605bbe0ba9397a483b7996d0b8c2c93d00cca91d534dca5f88fb51731fb 1131460 prodigal_2.6.3-4_riscv64.deb Files: a00b1de8c883b08737905837f58ce473 111552 debug optional prodigal-dbgsym_2.6.3-4_riscv64.ddeb 0e3bd6611b9662f91bfa651af65a1d61 4969 science optional prodigal_2.6.3-4_riscv64.buildinfo e6f6a401c70ece72104aaf67da14c47f 1131460 science optional prodigal_2.6.3-4_riscv64.deb /<>/prodigal_2.6.3-4_riscv64.changes.new could not be renamed to /<>/prodigal_2.6.3-4_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: prodigal Binary: prodigal Architecture: riscv64 Version: 1:2.6.3-4 Checksums-Md5: a00b1de8c883b08737905837f58ce473 111552 prodigal-dbgsym_2.6.3-4_riscv64.ddeb e6f6a401c70ece72104aaf67da14c47f 1131460 prodigal_2.6.3-4_riscv64.deb Checksums-Sha1: 8b82515d712b720a5af5193791191081f80058a6 111552 prodigal-dbgsym_2.6.3-4_riscv64.ddeb bd87d22e46a47e24f608307ac6a8f5d6a6cf167d 1131460 prodigal_2.6.3-4_riscv64.deb Checksums-Sha256: 1c323e3600e511800cb5d25799c6c7b081cab90f5d1e8df74b4363d34c7e58b8 111552 prodigal-dbgsym_2.6.3-4_riscv64.ddeb 1b07f605bbe0ba9397a483b7996d0b8c2c93d00cca91d534dca5f88fb51731fb 1131460 prodigal_2.6.3-4_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Tue, 07 Apr 2020 18:18:32 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu4), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-5ubuntu1), binutils-common (= 2.34-5ubuntu1), binutils-riscv64-linux-gnu (= 2.34-5ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu8), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-10ubuntu1), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.10ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-10ubuntu1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200324-1ubuntu1), gcc-9 (= 9.3.0-10ubuntu1), gcc-9-base (= 9.3.0-10ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libatomic1 (= 10-20200324-1ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-5ubuntu1), libblkid1 (= 2.34-0.1ubuntu8), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu7), libc-dev-bin (= 2.31-0ubuntu7), libc6 (= 2.31-0ubuntu7), libc6-dev (= 2.31-0ubuntu7), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10-20200324-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-5ubuntu1), libctf0 (= 2.34-5ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 12.10ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-9-dev (= 9.3.0-10ubuntu1), libgcc-s1 (= 10-20200324-1ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.1-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200324-1ubuntu1), libgpg-error0 (= 1.37-1), libicu66 (= 66.1-2ubuntu2), libisl22 (= 0.22.1-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1ubuntu8), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libperl5.30 (= 5.30.0-9build1), libpipeline1 (= 1.5.2-2build1), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1ubuntu8), libstdc++-9-dev (= 9.3.0-10ubuntu1), libstdc++6 (= 10-20200324-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.2-1ubuntu3), libtinfo6 (= 6.2-0ubuntu2), libtool (= 2.4.6-14), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.2-1ubuntu3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu8), libxml2 (= 2.9.10+dfsg-4build1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-23.27), login (= 1:4.8.1-1ubuntu4), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-0ubuntu2), ncurses-bin (= 6.2-0ubuntu2), patch (= 2.7.6-6), perl (= 5.30.0-9build1), perl-base (= 5.30.0-9build1), perl-modules-5.30 (= 5.30.0-9build1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2019c-3ubuntu1), util-linux (= 2.34-0.1ubuntu8), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1523365090" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ prodigal_2.6.3-4_riscv64.deb ---------------------------- new Debian package, version 2.0. size 1131460 bytes: control archive=1552 bytes. 1896 bytes, 41 lines control 550 bytes, 8 lines md5sums Package: prodigal Version: 1:2.6.3-4 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 11721 Depends: libc6 (>= 2.27) Section: science Priority: optional Homepage: http://prodigal.ornl.gov/ Description: Microbial (bacterial and archaeal) gene finding program Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include: . Speed: Prodigal is an extremely fast gene recognition tool (written in very vanilla C). It can analyze an entire microbial genome in 30 seconds or less. . Accuracy: Prodigal is a highly accurate gene finder. It correctly locates the 3' end of every gene in the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enables it to locate the translation initiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly). . Specificity: Prodigal's false positive rate compares favorably with other gene identification programs, and usually falls under 5%. . GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations. . Metagenomic Version: Prodigal can run in metagenomic mode and analyze sequences even when the organism is unknown. . Ease of Use: Prodigal can be run in one step on a single genomic sequence or on a draft genome containing many sequences. It does not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own. drwxr-xr-x root/root 0 2018-04-10 12:58 ./ drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/ drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/bin/ -rwxr-xr-x root/root 11933968 2018-04-10 12:58 ./usr/bin/prodigal drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/share/ drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/share/doc/prodigal/ -rw-r--r-- root/root 2401 2016-02-12 00:28 ./usr/share/doc/prodigal/README.md -rw-r--r-- root/root 177 2018-04-10 12:58 ./usr/share/doc/prodigal/README.test -rw-r--r-- root/root 786 2018-04-10 12:58 ./usr/share/doc/prodigal/changelog.Debian.gz -rw-r--r-- root/root 1900 2018-04-10 12:58 ./usr/share/doc/prodigal/copyright -rw-r--r-- root/root 377 2018-04-10 12:58 ./usr/share/doc/prodigal/run-unit-test drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/share/doc/prodigal/test-data/ -rw-r--r-- root/root 47115 2018-04-10 12:58 ./usr/share/doc/prodigal/test-data/genome.fna.gz drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/share/man/ drwxr-xr-x root/root 0 2018-04-10 12:58 ./usr/share/man/man1/ -rw-r--r-- root/root 855 2018-04-10 12:58 ./usr/share/man/man1/prodigal.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 77780 Build-Time: 33592 Distribution: focal Host Architecture: riscv64 Install-Time: 95 Job: prodigal_2.6.3-4.dsc Machine Architecture: riscv64 Package: prodigal Package-Time: 33713 Source-Version: 1:2.6.3-4 Space: 77780 Status: successful Version: 1:2.6.3-4 -------------------------------------------------------------------------------- Finished at 2020-04-07T18:18:38Z Build needed 09:21:53, 77780k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19109362 Scanning for processes to kill in build PACKAGEBUILD-19109362 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19109362 Stopping target for build PACKAGEBUILD-19109362 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19109362 Removing build PACKAGEBUILD-19109362