https://launchpad.net/ubuntu/+source/prody/2.4.1+dfsg-2/+build/27776641 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-riscv64-041 5.19.0-1021-generic #23~22.04.1-Ubuntu SMP Thu Jun 22 12:49:35 UTC 2023 riscv64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu22.04.1 python3-lpbuildd_235~645~ubuntu22.04.1 sbuild_0.81.2ubuntu6 git-build-recipe_0.3.6 git_1:2.34.1-1ubuntu1.10 dpkg-dev_1.21.1ubuntu2.2 python3-debian_0.1.43ubuntu1.1. Syncing the system clock with the buildd NTP service... 15 Feb 23:55:33 ntpdate[2287]: adjust time server 10.211.37.1 offset -0.003462 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27776641 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-27776641 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27776641 Starting target for build PACKAGEBUILD-27776641 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27776641 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27776641 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27776641 Updating target for build PACKAGEBUILD-27776641 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1356 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [519 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [14.8 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6021 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [228 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [82.0 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [959 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [460 kB] Fetched 25.0 MB in 26s (965 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.36 libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13-riscv64-linux-gnu cpp-riscv64-linux-gnu g++-13-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-13-riscv64-linux-gnu gcc-14-base gcc-riscv64-linux-gnu libperl5.38 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-riscv64-linux-gnu bsdextrautils bsdutils ca-certificates coreutils cpp cpp-13 debconf debconf-i18n debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers krb5-locales libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 150 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 58.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl-dev riscv64 1.3.0-3 [135 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main riscv64 libcrypt-dev riscv64 1:4.4.36-4 [322 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6-dev riscv64 2.39-0ubuntu1 [3459 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-dev-bin riscv64 2.39-0ubuntu1 [20.0 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc-common all 1.3.4+ds-1build1 [8566 B] Get:6 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc-dev riscv64 1.3.4+ds-1build1 [429 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 libgssapi-krb5-2 riscv64 1.20.1-5build1 [148 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main riscv64 libkrb5-3 riscv64 1.20.1-5build1 [377 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 libk5crypto3 riscv64 1.20.1-5build1 [106 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main riscv64 libkrb5support0 riscv64 1.20.1-5build1 [35.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkeyutils1 riscv64 1.6.3-3 [9694 B] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 libssl3 riscv64 3.0.10-1ubuntu4 [1729 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc3 riscv64 1.3.4+ds-1build1 [105 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl2 riscv64 1.3.0-3 [42.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 libcrypt1 riscv64 1:4.4.36-4 [115 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 linux-libc-dev riscv64 6.6.0-14.14 [1550 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6 riscv64 2.39-0ubuntu1 [2770 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-bin riscv64 2.39-0ubuntu1 [607 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-14-base riscv64 14-20240201-3ubuntu1 [46.4 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-s1 riscv64 14-20240201-3ubuntu1 [61.0 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 base-files riscv64 13ubuntu6 [84.2 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 debianutils riscv64 5.16 [93.8 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 bash riscv64 5.2.21-2ubuntu1 [735 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 bsdutils riscv64 1:2.39.2-6ubuntu1 [113 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 coreutils riscv64 9.4-2ubuntu3 [1496 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 diffutils riscv64 1:3.10-1 [180 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error0 riscv64 1.47-3build1 [75.7 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcrypt20 riscv64 1.10.3-2 [564 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma5 riscv64 5.4.5-0.3 [143 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++6 riscv64 14-20240201-3ubuntu1 [804 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main riscv64 libacl1 riscv64 2.3.1-4ubuntu1 [20.2 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapparmor1 riscv64 4.0.0~alpha4-0ubuntu1 [50.6 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit-common all 1:3.1.2-2 [5594 B] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcap-ng0 riscv64 0.8.4-2 [15.3 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit1 riscv64 1:3.1.2-2 [47.8 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 libblkid1 riscv64 2.39.2-6ubuntu1 [199 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2 [349 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main riscv64 libkmod2 riscv64 30+20230601-2ubuntu1 [52.6 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-8-0 riscv64 10.42-4ubuntu1 [149 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main riscv64 libselinux1 riscv64 3.5-2build1 [85.7 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main riscv64 libmount1 riscv64 2.39.2-6ubuntu1 [207 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main riscv64 perl-modules-5.38 all 5.38.2-3 [3110 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main riscv64 libperl5.38 riscv64 5.38.2-3 [4467 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main riscv64 perl riscv64 5.38.2-3 [231 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main riscv64 perl-base riscv64 5.38.2-3 [1834 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main riscv64 liblocale-gettext-perl riscv64 1.07-6build1 [15.4 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main riscv64 libtext-iconv-perl riscv64 1.7-8build1 [13.4 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main riscv64 libtext-charwidth-perl riscv64 0.04-11build1 [9182 B] Get:50 http://ftpmaster.internal/ubuntu noble/main riscv64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main riscv64 libperl5.36 riscv64 5.36.0-10ubuntu1 [4337 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libdb5.3 riscv64 5.3.28+dfsg2-4 [783 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 libgdbm6 riscv64 1.23-5 [34.3 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main riscv64 libgdbm-compat4 riscv64 1.23-5 [6414 B] Get:55 http://ftpmaster.internal/ubuntu noble/main riscv64 zlib1g riscv64 1:1.3.dfsg-3ubuntu1 [61.1 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debconf-i18n all 1.5.86 [205 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debconf all 1.5.86 [124 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam0g riscv64 1.5.2-9.1ubuntu2 [67.3 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 libseccomp2 riscv64 2.5.5-1ubuntu1 [52.9 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-sysv riscv64 255.2-3ubuntu2 [11.9 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-dev all 255.2-3ubuntu2 [101 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd riscv64 255.2-3ubuntu2 [3547 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd-shared riscv64 255.2-3ubuntu2 [2178 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-4 [23.7 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 libuuid1 riscv64 2.39.2-6ubuntu1 [36.2 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main riscv64 libcryptsetup12 riscv64 2:2.6.1-6ubuntu1 [251 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main riscv64 libfdisk1 riscv64 2.39.2-6ubuntu1 [234 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main riscv64 mount riscv64 2.39.2-6ubuntu1 [150 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd0 riscv64 255.2-3ubuntu2 [455 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main riscv64 libudev1 riscv64 255.2-3ubuntu2 [178 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main riscv64 libxxhash0 riscv64 0.8.2-2 [43.7 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapt-pkg6.0 riscv64 2.7.11 [1047 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 tar riscv64 1.35+dfsg-3 [269 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg riscv64 1.22.4ubuntu3 [1285 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main riscv64 grep riscv64 3.11-4 [182 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 login riscv64 1:4.13+dfsg1-3ubuntu1 [202 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-bin riscv64 6.4+20240113-1ubuntu1 [186 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main riscv64 sed riscv64 4.9-2 [211 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main riscv64 util-linux riscv64 2.39.2-6ubuntu1 [1314 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 libdebconfclient0 riscv64 0.271ubuntu1 [11.1 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 base-passwd riscv64 3.6.3 [52.1 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main riscv64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 sysvinit-utils riscv64 3.08-3ubuntu1 [34.5 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt riscv64 2.7.11 [1345 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt-utils riscv64 2.7.11 [226 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpgv riscv64 2.4.4-2ubuntu2 [275 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main riscv64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main riscv64 libffi8 riscv64 3.4.4-2 [22.5 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main riscv64 libp11-kit0 riscv64 0.25.3-4ubuntu1 [318 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main riscv64 libunistring5 riscv64 1.1-2 [544 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main riscv64 libidn2-0 riscv64 2.3.7-2 [102 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 libgnutls30 riscv64 3.8.3-1ubuntu1 [1012 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam-modules-bin riscv64 1.5.2-9.1ubuntu2 [51.4 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam-modules riscv64 1.5.2-9.1ubuntu2 [290 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main riscv64 init riscv64 1.66ubuntu1 [6190 B] Get:97 http://ftpmaster.internal/ubuntu noble/main riscv64 libsmartcols1 riscv64 2.39.2-6ubuntu1 [142 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main riscv64 uuid-runtime riscv64 2.39.2-6ubuntu1 [48.3 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main riscv64 libattr1 riscv64 1:2.5.2-1 [11.5 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main riscv64 libmd0 riscv64 1.1.0-2 [30.6 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam-runtime all 1.5.2-9.1ubuntu2 [40.6 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main riscv64 libsemanage-common all 3.5-1build2 [10.0 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 libsepol2 riscv64 3.5-2 [312 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main riscv64 libsemanage2 riscv64 3.5-1build2 [100 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libncursesw6 riscv64 6.4+20240113-1ubuntu1 [155 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtinfo6 riscv64 6.4+20240113-1ubuntu1 [108 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main riscv64 passwd riscv64 1:4.13+dfsg1-3ubuntu1 [857 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-13 riscv64 13.2.0-13ubuntu1 [14.0 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13 riscv64 13.2.0-13ubuntu1 [443 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-13 riscv64 13.2.0-13ubuntu1 [1030 B] Get:111 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-13-riscv64-linux-gnu riscv64 13.2.0-13ubuntu1 [10.3 MB] Get:112 http://ftpmaster.internal/ubuntu noble/main riscv64 libcc1-0 riscv64 14-20240201-3ubuntu1 [45.0 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf0 riscv64 2.42-2ubuntu1 [104 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf-nobfd0 riscv64 2.42-2ubuntu1 [106 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main riscv64 libsframe1 riscv64 2.42-2ubuntu1 [15.4 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-riscv64-linux-gnu riscv64 2.42-2ubuntu1 [899 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main riscv64 libbinutils riscv64 2.42-2ubuntu1 [566 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils riscv64 2.42-2ubuntu1 [2994 B] Get:119 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-common riscv64 2.42-2ubuntu1 [209 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++-13-dev riscv64 13.2.0-13ubuntu1 [5461 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main riscv64 libgomp1 riscv64 14-20240201-3ubuntu1 [144 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main riscv64 libatomic1 riscv64 14-20240201-3ubuntu1 [9482 B] Get:123 http://ftpmaster.internal/ubuntu noble/main riscv64 libasan8 riscv64 14-20240201-3ubuntu1 [2610 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-13-dev riscv64 13.2.0-13ubuntu1 [3140 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13-riscv64-linux-gnu riscv64 13.2.0-13ubuntu1 [19.7 MB] Get:126 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-13-riscv64-linux-gnu riscv64 13.2.0-13ubuntu1 [11.6 MB] Get:127 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13-base riscv64 13.2.0-13ubuntu1 [46.6 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main riscv64 libproc2-0 riscv64 2:4.0.4-2ubuntu1 [58.9 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main riscv64 mawk riscv64 1.3.4.20240123-1 [129 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main riscv64 procps riscv64 2:4.0.4-2ubuntu1 [712 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 sensible-utils all 0.0.22 [22.5 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main riscv64 openssl riscv64 3.0.10-1ubuntu4 [991 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main riscv64 ca-certificates all 20240203 [159 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main riscv64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libip4tc2 riscv64 1.8.10-3ubuntu1 [23.9 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main riscv64 readline-common all 8.2-3 [56.2 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main riscv64 libreadline8 riscv64 8.2-3 [151 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main riscv64 libsqlite3-0 riscv64 3.45.1-1 [739 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 tzdata all 2024a-1ubuntu1 [273 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main riscv64 bsdextrautils riscv64 2.39.2-6ubuntu1 [91.3 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main riscv64 libpng16-16 riscv64 1.6.42-1 [193 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main riscv64 psmisc riscv64 23.6-2 [176 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main riscv64 xz-utils riscv64 5.4.5-0.3 [277 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main riscv64 g++ riscv64 4:13.2.0-7ubuntu1 [1082 B] Get:146 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc riscv64 4:13.2.0-7ubuntu1 [5016 B] Get:147 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp riscv64 4:13.2.0-7ubuntu1 [22.4 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [5316 B] Get:149 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [1202 B] Get:150 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [960 B] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg-dev all 1.22.4ubuntu3 [1078 kB] Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdpkg-perl all 1.22.4ubuntu3 [268 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main riscv64 lto-disabled-list all 46 [12.3 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main riscv64 libfakeroot riscv64 1.33-1 [34.6 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main riscv64 fakeroot riscv64 1.33-1 [78.4 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main riscv64 pinentry-curses riscv64 1.2.1-3ubuntu1 [39.5 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpg riscv64 2.4.4-2ubuntu2 [605 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpgconf riscv64 2.4.4-2ubuntu2 [133 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpg-agent riscv64 2.4.4-2ubuntu2 [282 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main riscv64 optipng riscv64 0.7.8+ds-1 [115 kB] Preconfiguring packages ... 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Unpacking gpg-agent (2.4.4-2ubuntu2) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../52-optipng_0.7.8+ds-1_riscv64.deb ... Unpacking optipng (0.7.8+ds-1) over (0.7.7-2build1) ... Setting up libip4tc2:riscv64 (1.8.10-3ubuntu1) ... Setting up libtext-iconv-perl:riscv64 (1.7-8build1) ... Setting up libtext-charwidth-perl:riscv64 (0.04-11build1) ... Setting up libkeyutils1:riscv64 (1.6.3-3) ... Setting up lto-disabled-list (46) ... Setting up apt-utils (2.7.11) ... Setting up bsdextrautils (2.39.2-6ubuntu1) ... Setting up init (1.66ubuntu1) ... Setting up psmisc (23.6-2) ... Setting up libtirpc-common (1.3.4+ds-1build1) ... Setting up libsqlite3-0:riscv64 (3.45.1-1) ... Setting up binutils-common:riscv64 (2.42-2ubuntu1) ... Setting up linux-libc-dev:riscv64 (6.6.0-14.14) ... Setting up libctf-nobfd0:riscv64 (2.42-2ubuntu1) ... Setting up krb5-locales (1.20.1-5build1) ... Setting up libgomp1:riscv64 (14-20240201-3ubuntu1) ... Setting up libsframe1:riscv64 (2.42-2ubuntu1) ... Setting up libfakeroot:riscv64 (1.33-1) ... Setting up libkrb5support0:riscv64 (1.20.1-5build1) ... Setting up tzdata (2024a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 16 00:01:59 UTC 2024. Universal Time is now: Fri Feb 16 00:01:59 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up perl-modules-5.36 (5.36.0-10ubuntu1) ... Setting up gcc-13-base:riscv64 (13.2.0-13ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.4.5-0.3) ... Setting up perl-modules-5.38 (5.38.2-3) ... Setting up libproc2-0:riscv64 (2:4.0.4-2ubuntu1) ... Setting up libpng16-16:riscv64 (1.6.42-1) ... Setting up libatomic1:riscv64 (14-20240201-3ubuntu1) ... Setting up libncursesw6:riscv64 (6.4+20240113-1ubuntu1) ... Setting up libk5crypto3:riscv64 (1.20.1-5build1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.2-6ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:riscv64 (1:4.4.36-4) ... Setting up libasan8:riscv64 (14-20240201-3ubuntu1) ... Setting up procps (2:4.0.4-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:riscv64 (1.20.1-5build1) ... Setting up libbinutils:riscv64 (2.42-2ubuntu1) ... Setting up libc-dev-bin (2.39-0ubuntu1) ... Setting up openssl (3.0.10-1ubuntu4) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:riscv64 (14-20240201-3ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6build1) ... Setting up libgdbm6:riscv64 (1.23-5) ... Setting up libctf0:riscv64 (2.42-2ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu1) ... Setting up cpp-13-riscv64-linux-gnu (13.2.0-13ubuntu1) ... Setting up libreadline8:riscv64 (8.2-3) ... Setting up binutils-riscv64-linux-gnu (2.42-2ubuntu1) ... Setting up debconf-i18n (1.5.86) ... Setting up binutils (2.42-2ubuntu1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up optipng (0.7.8+ds-1) ... Setting up libgssapi-krb5-2:riscv64 (1.20.1-5build1) ... Setting up libgdbm-compat4:riscv64 (1.23-5) ... Setting up libgcc-13-dev:riscv64 (13.2.0-13ubuntu1) ... Setting up gpgconf (2.4.4-2ubuntu2) ... Setting up cpp-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libperl5.36:riscv64 (5.36.0-10ubuntu1) ... Setting up gpg (2.4.4-2ubuntu2) ... Setting up libtirpc3:riscv64 (1.3.4+ds-1build1) ... Setting up gpg-agent (2.4.4-2ubuntu2) ... Setting up cpp-13 (13.2.0-13ubuntu1) ... Setting up gcc-13-riscv64-linux-gnu (13.2.0-13ubuntu1) ... Setting up libperl5.38:riscv64 (5.38.2-3) ... Setting up gcc-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up perl (5.38.2-3) ... Setting up libtirpc-dev:riscv64 (1.3.4+ds-1build1) ... Setting up gcc-13 (13.2.0-13ubuntu1) ... Setting up libdpkg-perl (1.22.4ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:riscv64 (1.3.0-3) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up dpkg-dev (1.22.4ubuntu3) ... Setting up libnsl-dev:riscv64 (1.3.0-3) ... Setting up libc6-dev:riscv64 (2.39-0ubuntu1) ... Setting up libstdc++-13-dev:riscv64 (13.2.0-13ubuntu1) ... Setting up g++-13-riscv64-linux-gnu (13.2.0-13ubuntu1) ... Setting up g++-13 (13.2.0-13ubuntu1) ... Setting up g++-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Processing triggers for libc-bin (2.39-0ubuntu1) ... Processing triggers for debianutils (5.16) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27776641 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-27776641 --arch=riscv64 --dist=noble-proposed --nolog prody_2.4.1+dfsg-2.dsc Initiating build PACKAGEBUILD-27776641 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.19.0-1021-generic #23~22.04.1-Ubuntu SMP Thu Jun 22 12:49:35 UTC 2023 riscv64 sbuild (Debian sbuild) 0.81.2ubuntu6 (16 February 2022) on bos03-riscv64-041.buildd +==============================================================================+ | prody 2.4.1+dfsg-2 (riscv64) Fri, 16 Feb 2024 00:04:16 +0000 | +==============================================================================+ Package: prody Version: 2.4.1+dfsg-2 Source Version: 2.4.1+dfsg-2 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27776641/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/prody-FcsZMt/resolver-eMKjqX' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- prody_2.4.1+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/prody-FcsZMt/prody-2.4.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/prody-FcsZMt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython, python3-numpy, python3-pyparsing, python3-scipy, python3-setuptools, python3-zombie-imp, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython, python3-numpy, python3-pyparsing, python3-scipy, python3-setuptools, python3-zombie-imp, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [437 B] Get:5 copy:/<>/apt_archive ./ Packages [508 B] Fetched 1902 B in 0s (5522 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-all-dev python3-biopython python3-cairo python3-chardet python3-decorator python3-dev python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-zombie-imp python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff low-memory-monitor liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise gfortran python3-pytest python-pil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python-setuptools-doc python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-all-dev python3-biopython python3-cairo python3-chardet python3-decorator python3-dev python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-zombie-imp python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-dejavu-core all 2.37-8 [835 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main riscv64 libfontenc1 riscv64 1:1.1.4-1build3 [13.2 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main riscv64 libbrotli1 riscv64 1.1.0-2 [381 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 libfreetype6 riscv64 2.13.2+dfsg-1 [420 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main riscv64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main riscv64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main riscv64 xfonts-utils riscv64 1:7.7+6build2 [92.1 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-urw-base35 all 20200910-7 [11.0 MB] Get:70 http://ftpmaster.internal/ubuntu noble/main riscv64 fontconfig-config riscv64 2.14.2-6ubuntu1 [36.0 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-dejavu-extra all 2.37-8 [1947 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libblas3 riscv64 3.12.0-3 [132 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 libfontconfig1 riscv64 2.14.2-6ubuntu1 [139 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main riscv64 libpixman-1-0 riscv64 0.42.2-1 [165 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-render0 riscv64 1.15-1 [13.8 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-shm0 riscv64 1.15-1 [5326 B] Get:77 http://ftpmaster.internal/ubuntu noble/main riscv64 libxrender1 riscv64 1:0.9.10-1.1 [17.5 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main riscv64 libcairo2 riscv64 1.18.0-1 [595 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main riscv64 libdeflate0 riscv64 1.19-1 [40.0 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libexpat1-dev riscv64 2.6.0-1 [692 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 libgfortran5 riscv64 14-20240201-3ubuntu1 [459 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main riscv64 libgraphite2-3 riscv64 1.3.14-2 [94.1 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 libharfbuzz0b riscv64 8.3.0-2 [576 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 libimagequant0 riscv64 2.18.0-1 [39.5 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-turbo8 riscv64 2.1.5-2ubuntu1 [119 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8 riscv64 8c-2ubuntu11 [2150 B] Get:87 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libjs-sphinxdoc all 7.2.6-4 [149 kB] Get:90 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libpython3.11-dev riscv64 3.11.8-1 [15.5 MB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3-all-dev riscv64 3.12.1-0ubuntu1 [918 B] Get:101 http://ftpmaster.internal/ubuntu noble/main riscv64 libraqm0 riscv64 0.10.1-1 [13.2 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main riscv64 libsharpyuv0 riscv64 1.3.2-0.3 [14.0 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 libjbig0 riscv64 2.1-6.1ubuntu1 [28.0 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main riscv64 libwebp7 riscv64 1.3.2-0.3 [198 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main riscv64 libtiff6 riscv64 4.5.1+git230720-3ubuntu1 [232 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main riscv64 libwebpdemux2 riscv64 1.3.2-0.3 [12.7 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main riscv64 libwebpmux3 riscv64 1.3.2-0.3 [27.3 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all riscv64 3.12.1-0ubuntu1 [912 B] Get:109 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.12-dev riscv64 3.12.2-1 [498 kB] Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-dev riscv64 3.12.1-0ubuntu1 [26.7 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.11-dev riscv64 3.11.8-1 [500 kB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all-dev riscv64 3.12.1-0ubuntu1 [916 B] Get:113 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-numpy riscv64 1:1.24.2-2 [4631 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-chardet all 5.2.0+dfsg-1 [117 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main riscv64 libopenjp2-7 riscv64 2.5.0-2 [175 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pil riscv64 10.2.0-1 [506 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-cairo riscv64 1.25.1-2 [154 kB] Get:118 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-freetype all 2.4.0-1 [83.1 kB] Get:119 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-rlpycairo all 0.3.0-3 [9130 B] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-reportlab all 4.1.0-1 [683 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main riscv64 xml-core all 0.19 [20.3 kB] Get:122 http://ftpmaster.internal/ubuntu noble/universe riscv64 w3c-sgml-lib all 1.3-3 [280 kB] Get:123 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-biopython riscv64 1.81+dfsg-3 [2190 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-decorator all 5.1.1-5 [10.1 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pyparsing all 3.1.1-1 [86.2 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-zombie-imp all 0.0.2-2 [11.9 kB] Get:127 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-scipy riscv64 1.10.1-10build1 [20.3 MB] Preconfiguring packages ... Fetched 125 MB in 18s (7106 kB/s) Selecting previously unselected package libpython3.12-minimal:riscv64. (Reading database ... 15708 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.2-1_riscv64.deb ... Unpacking libpython3.12-minimal:riscv64 (3.12.2-1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.6.0-1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.6.0-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.2-1_riscv64.deb ... Unpacking python3.12-minimal (3.12.2-1) ... Setting up libpython3.12-minimal:riscv64 (3.12.2-1) ... Setting up libexpat1:riscv64 (2.6.0-1) ... Setting up python3.12-minimal (3.12.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 16026 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.1-0ubuntu1_riscv64.deb ... 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Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.79.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.13ubuntu1) ... Setting up libbrotli1:riscv64 (1.1.0-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:riscv64 (1:5.45-2) ... Setting up libdeflate0:riscv64 (1.19-1) ... Setting up gettext-base (0.21-14ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up libjbig0:riscv64 (2.1-6.1ubuntu1) ... Setting up libfontenc1:riscv64 (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:riscv64 (3.12.0-3) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libexpat1-dev:riscv64 (2.6.0-1) ... Setting up libfreetype6:riscv64 (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:riscv64 (1.0.13-3) ... Setting up libimagequant0:riscv64 (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libjpeg-turbo8:riscv64 (2.1.5-2ubuntu1) ... Setting up libgfortran5:riscv64 (14-20240201-3ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:riscv64 (1.3.2-0.3) ... Setting up libicu74:riscv64 (74.2-1ubuntu1) ... Setting up zlib1g-dev:riscv64 (1:1.3.dfsg-3ubuntu1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libuchardet0:riscv64 (0.0.8-1) ... Setting up libopenjp2-7:riscv64 (2.5.0-2) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:riscv64 (8.3.0-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libpython3.11-minimal:riscv64 (3.11.8-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libwebpmux3:riscv64 (1.3.2-0.3) ... Setting up libbsd0:riscv64 (0.11.8-1) ... Setting up libelf1:riscv64 (0.190-1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.3ubuntu1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libjpeg8:riscv64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.11-minimal (3.11.8-1) ... Setting up libdw1:riscv64 (0.190-1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:riscv64 (3.12.0-3) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libxcb1:riscv64 (1.15-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libpython3.12-stdlib:riscv64 (3.12.2-1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:riscv64 (1.15-1) ... Setting up fontconfig-config (2.14.2-6ubuntu1) ... Setting up libwebpdemux2:riscv64 (1.3.2-0.3) ... Setting up libpython3.11-stdlib:riscv64 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libxcb-shm0:riscv64 (1.15-1) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:riscv64 (0.10.1-1) ... Setting up libjs-sphinxdoc (7.2.6-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:riscv64 (4.5.1+git230720-3ubuntu1) ... Setting up xml-core (0.19) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:riscv64 (2:1.8.7-1) ... Setting up libfontconfig1:riscv64 (2.14.2-6ubuntu1) ... Setting up libpython3.12:riscv64 (3.12.2-1) ... Setting up libpython3-stdlib:riscv64 (3.12.1-0ubuntu1) ... Setting up liblbfgsb0:riscv64 (3.0+dfsg.4-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libpython3.11:riscv64 (3.11.8-1) ... Setting up libxrender1:riscv64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:riscv64 (2:1.3.4-1build1) ... Setting up python3 (3.12.1-0ubuntu1) ... Setting up libpython3.12-dev:riscv64 (3.12.2-1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-freetype (2.4.0-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libcairo2:riscv64 (1.18.0-1) ... Setting up python3-pil:riscv64 (10.2.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up libpython3.11-dev:riscv64 (3.11.8-1) ... Setting up python3.12-dev (3.12.2-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-zombie-imp (0.0.2-2) ... Setting up libpython3-dev:riscv64 (3.12.1-0ubuntu1) ... Setting up python3-cairo (1.25.1-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3.11-dev (3.11.8-1) ... Setting up python3-all (3.12.1-0ubuntu1) ... Setting up debhelper (13.13ubuntu1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:riscv64 (3.12.1-0ubuntu1) ... Setting up python3-dev (3.12.1-0ubuntu1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-reportlab (4.1.0-1) ... Setting up dh-python (6.20231223) ... Setting up python3-all-dev (3.12.1-0ubuntu1) ... Setting up python3-scipy (1.10.1-10build1) ... Processing triggers for libc-bin (2.39-0ubuntu1) ... Processing triggers for systemd (255.2-3ubuntu2) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.19.0-1021-generic #23~22.04.1-Ubuntu SMP Thu Jun 22 12:49:35 UTC 2023 riscv64 (riscv64) Toolchain package versions: binutils_2.42-2ubuntu1 dpkg-dev_1.22.4ubuntu3 g++-13_13.2.0-13ubuntu1 gcc-13_13.2.0-13ubuntu1 libc6-dev_2.39-0ubuntu1 libstdc++-13-dev_13.2.0-13ubuntu1 libstdc++6_14-20240201-3ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.11 apt-utils_2.7.11 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu6 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.42-2ubuntu1 binutils-common_2.42-2ubuntu1 binutils-riscv64-linux-gnu_2.42-2ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20240203 coreutils_9.4-2ubuntu3 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-13ubuntu1 cpp-13-riscv64-linux-gnu_13.2.0-13ubuntu1 cpp-riscv64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.13ubuntu1 debianutils_5.16 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20231223 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.4ubuntu3 dpkg-dev_1.22.4ubuntu3 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6ubuntu1 fonts-dejavu-core_2.37-8 fonts-dejavu-extra_2.37-8 fonts-dejavu-mono_2.37-8 fonts-urw-base35_20200910-7 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-13ubuntu1 g++-13-riscv64-linux-gnu_13.2.0-13ubuntu1 g++-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-13ubuntu1 gcc-13-base_13.2.0-13ubuntu1 gcc-13-riscv64-linux-gnu_13.2.0-13ubuntu1 gcc-14-base_14-20240201-3ubuntu1 gcc-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu1 gettext-base_0.21-14ubuntu1 gpg_2.4.4-2ubuntu2 gpg-agent_2.4.4-2ubuntu2 gpgconf_2.4.4-2ubuntu2 gpgv_2.4.4-2ubuntu2 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5build1 libacl1_2.3.1-4ubuntu1 libapparmor1_4.0.0~alpha4-0ubuntu1 libapt-pkg6.0_2.7.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_14-20240201-3ubuntu1 libassuan0_2.5.6-1 libatomic1_14-20240201-3ubuntu1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbinutils_2.42-2ubuntu1 libblas3_3.12.0-3 libblkid1_2.39.2-6ubuntu1 libbrotli1_1.1.0-2 libbsd0_0.11.8-1 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python3-decorator_5.1.1-5 python3-dev_3.12.1-0ubuntu1 python3-distutils_3.11.5-1 python3-freetype_2.4.0-1 python3-lib2to3_3.11.5-1 python3-minimal_3.12.1-0ubuntu1 python3-numpy_1:1.24.2-2 python3-pil_10.2.0-1 python3-pkg-resources_68.1.2-2 python3-pyparsing_3.1.1-1 python3-reportlab_4.1.0-1 python3-rlpycairo_0.3.0-3 python3-scipy_1.10.1-10build1 python3-setuptools_68.1.2-2 python3-zombie-imp_0.0.2-2 python3.11_3.11.8-1 python3.11-dev_3.11.8-1 python3.11-minimal_3.11.8-1 python3.12_3.12.2-1 python3.12-dev_3.12.2-1 python3.12-minimal_3.12.2-1 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sgml-base_1.31 systemd_255.2-3ubuntu2 systemd-dev_255.2-3ubuntu2 systemd-sysv_255.2-3ubuntu2 sysvinit-utils_3.08-3ubuntu1 tar_1.35+dfsg-3 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xml-core_0.19 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: prody Binary: python3-prody, python3-prody-tests Architecture: any all Version: 2.4.1+dfsg-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://github.com/prody/ProDy Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/prody Vcs-Git: https://salsa.debian.org/debichem-team/prody.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython , python3-numpy, python3-pyparsing , python3-scipy , python3-setuptools, python3-zombie-imp Package-List: python3-prody deb science optional arch=any python3-prody-tests deb science optional arch=all Checksums-Sha1: 9d0ead7d3fce8424a0c35a2396639566d5ebea77 16085288 prody_2.4.1+dfsg.orig.tar.xz 8197a08210bb98599434307c0619ecfaa172cb91 9728 prody_2.4.1+dfsg-2.debian.tar.xz Checksums-Sha256: f66b7affa47693dd3d8cf0f0ac833c4d313135420b1e6ece0767259099f5ad87 16085288 prody_2.4.1+dfsg.orig.tar.xz 0579e775804f9943152c3885561b5fcac4ed2c27557f32e6f20866a4d7c465e4 9728 prody_2.4.1+dfsg-2.debian.tar.xz Files: 295e44486fd6cb8cbe38f64aad51439e 16085288 prody_2.4.1+dfsg.orig.tar.xz b0b64099072b904019ec3863f8cf0801 9728 prody_2.4.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmXLF8QSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHJOYP/26FvLav1XZ1RkFUEwcX3U3CbXGw4asp U2QemYIXOfBoCAS7wuiWBDy/tzvjsp3he5V6jfM8x9DmHniyU7YSfeszZ6ogQR2m gsjCa+saWm93F5/I28ZQgY7soUCITQp3kdvMPJZO1fDr4CstwY42iBUxVO/X3k3R EqtERe8UkGwo5NLB9tu82KviG3IOni5IOeRpNUeZoSmdRMdssqmS8de+g+wBkvC5 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from debian/patches/series dpkg-source: info: applying no-network-access.patch dpkg-source: info: applying add-missing-test-files.patch dpkg-source: info: applying numpy-1.24.patch dpkg-source: info: applying 1816.patch dpkg-source: info: applying skip-equals-on-vector.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27776641 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27776641 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27776641 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package prody dpkg-buildpackage: info: source version 2.4.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --buildsystem pybuild --with numpy3,python3 dh_auto_clean -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.11_prody/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it I: pybuild base:305: python3.12 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.12_prody/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<>' rm -rf ProDy.egg-info make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem pybuild --with numpy3,python3 dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py config running config I: pybuild base:305: python3.12 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:305: /usr/bin/python3.11 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11_prody/build/prody copying prody/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody creating /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/chain.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/subset.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/pointer.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/angle.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/dihedral.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/bond.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/donor.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/hierview.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atomic.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/fields.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/residue.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atomgroup.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atom.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/segment.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/improper.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/acceptor.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/crossterm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/nbexclusion.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/flags.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atommap.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/selection.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/select.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic creating /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/dali.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/cath.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/pfam.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/goa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/quartataweb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/uniprot.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database creating /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/anm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/exanm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/essa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/sampling.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/bbenm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/adaptive.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/gnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/gamma.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/plotting.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/nma.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/heatmapper.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/signature.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/entropy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/clustenm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/modeset.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/compare.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/editing.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/perturb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/analysis.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/imanm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/exgnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/mode.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/bildfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/nmdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/rtb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/mechstiff.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/vmdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics creating /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/pdbensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/ensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/conformation.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble creating /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree copying prody/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree copying prody/kdtree/kdtree.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree creating /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/transform.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/measure.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/contacts.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure creating /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/starfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/pdbclusters.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/fixer.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/blastpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/compare.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/localpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/stride.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/header.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/dssp.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/ciffile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/pdbfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/cifheader.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/emdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/wwpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/waterbridges.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins creating /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/plotting.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/analysis.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/sequence.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/msafile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/msa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence creating /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/dcdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/frame.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/trajectory.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/trajbase.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/trajfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/psffile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory creating /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/norm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/straw.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/cluster.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/hic.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin creating /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/pdbligands.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/ccd.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/bird.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds creating /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition creating /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/logger.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/checkers.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/legacy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/misctools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/pathtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/drawtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/catchall.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/laptools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/doctools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/TreeConstruction.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/seqtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/eigtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/settings.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities creating /<>/.pybuild/cpython3_3.11_prody/build/prody/apps copying prody/apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps copying prody/apps/apptools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests copying prody/tests/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_select.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/test_contacts.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/test_transform.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/test_measure.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_header.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities creating /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build creating build/temp.linux-riscv64-cpython-311 creating build/temp.linux-riscv64-cpython-311/prody creating build/temp.linux-riscv64-cpython-311/prody/dynamics riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/dynamics/rtbtools.c -o build/temp.linux-riscv64-cpython-311/prody/dynamics/rtbtools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-311/prody/dynamics/rtbtools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/rtbtools.cpython-311-riscv64-linux-gnu.so building 'prody.dynamics.smtools' extension riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/dynamics/smtools.c -o build/temp.linux-riscv64-cpython-311/prody/dynamics/smtools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-311/prody/dynamics/smtools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/smtools.cpython-311-riscv64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-riscv64-cpython-311/prody/sequence riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/sequence/msatools.c -o build/temp.linux-riscv64-cpython-311/prody/sequence/msatools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-311/prody/sequence/msatools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msatools.cpython-311-riscv64-linux-gnu.so building 'prody.sequence.msaio' extension riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/sequence/msaio.c -o build/temp.linux-riscv64-cpython-311/prody/sequence/msaio.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-311/prody/sequence/msaio.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msaio.cpython-311-riscv64-linux-gnu.so building 'prody.sequence.seqtools' extension riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/sequence/seqtools.c -o build/temp.linux-riscv64-cpython-311/prody/sequence/seqtools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-311/prody/sequence/seqtools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/seqtools.cpython-311-riscv64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-riscv64-cpython-311/prody/kdtree riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/kdtree/KDTree.c -o build/temp.linux-riscv64-cpython-311/prody/kdtree/KDTree.o riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-riscv64-cpython-311/prody/kdtree/KDTreemodule.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-311/prody/kdtree/KDTree.o build/temp.linux-riscv64-cpython-311/prody/kdtree/KDTreemodule.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/_CKDTree.cpython-311-riscv64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-riscv64-cpython-311/prody/proteins creating build/temp.linux-riscv64-cpython-311/prody/proteins/ccealign riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -Iprody/utilities/tnt -I/usr/include/python3.11 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-riscv64-cpython-311/prody/proteins/ccealign/ccealignmodule.o riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-311/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/ccealign.cpython-311-riscv64-linux-gnu.so I: pybuild base:305: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12_prody/build/prody copying prody/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody creating /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/chain.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/subset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/pointer.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/angle.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/dihedral.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/bond.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/donor.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/hierview.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atomic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/fields.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/residue.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atomgroup.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atom.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/segment.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/improper.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/acceptor.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/crossterm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/nbexclusion.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/flags.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atommap.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/selection.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic creating /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/dali.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/cath.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/pfam.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/goa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/quartataweb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/uniprot.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database creating /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/exanm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/essa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/sampling.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/bbenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/adaptive.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/gamma.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/plotting.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/nma.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/heatmapper.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/signature.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/entropy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/clustenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/modeset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/compare.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/editing.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/perturb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/imanm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/exgnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/mode.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/bildfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/nmdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/rtb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/mechstiff.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/vmdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics creating /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/pdbensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/ensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/conformation.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble creating /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree copying prody/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree copying prody/kdtree/kdtree.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree creating /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/transform.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/measure.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure creating /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/starfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/pdbclusters.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/fixer.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/blastpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/compare.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/localpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/stride.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/header.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/dssp.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/ciffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/pdbfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/cifheader.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/emdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/wwpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/waterbridges.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins creating /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/plotting.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/sequence.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/msafile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/msa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence creating /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/dcdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/frame.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajectory.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajbase.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/psffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory creating /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/norm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/straw.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/cluster.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/hic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin creating /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/pdbligands.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/ccd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/bird.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds creating /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition creating /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/logger.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/checkers.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/legacy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/misctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/pathtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/drawtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/catchall.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/laptools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/doctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/TreeConstruction.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/seqtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/eigtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/settings.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps copying prody/apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps copying prody/apps/apptools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests copying prody/tests/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_transform.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_measure.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_header.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities creating /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-riscv64-cpython-312 creating build/temp.linux-riscv64-cpython-312/prody creating build/temp.linux-riscv64-cpython-312/prody/dynamics riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-riscv64-cpython-312/prody/dynamics/rtbtools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/rtbtools.cpython-312-riscv64-linux-gnu.so building 'prody.dynamics.smtools' extension riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-riscv64-cpython-312/prody/dynamics/smtools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-312/prody/dynamics/smtools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/smtools.cpython-312-riscv64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-riscv64-cpython-312/prody/sequence riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-riscv64-cpython-312/prody/sequence/msatools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-312/prody/sequence/msatools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msatools.cpython-312-riscv64-linux-gnu.so building 'prody.sequence.msaio' extension riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-riscv64-cpython-312/prody/sequence/msaio.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-312/prody/sequence/msaio.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msaio.cpython-312-riscv64-linux-gnu.so building 'prody.sequence.seqtools' extension riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-riscv64-cpython-312/prody/sequence/seqtools.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-312/prody/sequence/seqtools.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/seqtools.cpython-312-riscv64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-riscv64-cpython-312/prody/kdtree riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-riscv64-cpython-312/prody/kdtree/KDTree.o riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-riscv64-cpython-312/prody/kdtree/KDTreemodule.o riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-312/prody/kdtree/KDTree.o build/temp.linux-riscv64-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/_CKDTree.cpython-312-riscv64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-riscv64-cpython-312/prody/proteins creating build/temp.linux-riscv64-cpython-312/prody/proteins/ccealign riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fno-omit-frame-pointer -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-riscv64-cpython-312/prody/proteins/ccealign/ccealignmodule.o riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-riscv64-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib/riscv64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/ccealign.cpython-312-riscv64-linux-gnu.so dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:305: /usr/bin/python3.11 setup.py install --root /<>/debian/python3-prody running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /<>/debian/python3-prody creating /<>/debian/python3-prody/usr creating /<>/debian/python3-prody/usr/lib creating /<>/debian/python3-prody/usr/lib/python3.11 creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/starfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/pdbclusters.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/ccealign.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/fixer.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/blastpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/compare.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/stride.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/header.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/dssp.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/cifheader.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/emdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/waterbridges.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/transform.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/measure.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/contacts.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/norm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/straw.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/cluster.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/hic.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_dssp.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_header.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/test_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/test_transform.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/test_measure.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3o21.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/xmlSTI.xml -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot.slx -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pca2k39_cov.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3p3w.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3hsy.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdbRTER.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/commute1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/rtb2gb1_project.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/mmcif_6yfy.cif -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ubi.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/mmcif_6zu5.cif -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pca2k39_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/hit1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pca2k39_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ejg.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot.sth -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3mht.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_examples.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_conformation.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/test_frame.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/test_dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_checkers.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_misctools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_msa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_analysis.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_msafile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_sequence.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_signature.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_enms.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_editing.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree/test_kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_hierview.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_select.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_atomic.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_fragment.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_subset.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_atommap.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_eda.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_blast.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_select.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_energy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_biomol.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_align.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/nmaoptions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/apptools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_search.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_merge.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_refine.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_coevol.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_rankorder.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_conserv.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_occupancy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_filter.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition/spectrus.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.11_prody/build/prody/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/conformation.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/frame.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajectory.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajbase.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/psffile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/logger.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles/saxs_water.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles/mod_res_map.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/checkers.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/legacy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/misctools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/drawtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/catchall.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/laptools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/doctools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/TreeConstruction.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/seqtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/eigtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/settings.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/dali.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/cath.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/pfam.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/goa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/quartataweb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/uniprot.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/pdbligands.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/ccd.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/bird.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msaio.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/sequence.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/seqtools.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msafile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msatools.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/anm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/exanm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/essa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/sampling.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/bbenm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/adaptive.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/gnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/gamma.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/nma.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/heatmapper.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/signature.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/entropy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/modeset.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/compare.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/editing.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/perturb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/imanm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/exgnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/mode.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/bildfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/rtbtools.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/nmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/rtb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/mechstiff.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/vmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/smtools.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/_CKDTree.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/chain.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/subset.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/pointer.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/angle.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/dihedral.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/bond.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/donor.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/hierview.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atomic.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/fields.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/residue.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atomgroup.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atom.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/segment.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/improper.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/acceptor.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/crossterm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/nbexclusion.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/flags.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atommap.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/selection.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/select.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/starfile.py to starfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/fixer.py to fixer.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/blastpdb.py to blastpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/compare.py to compare.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/localpdb.py to localpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/stride.py to stride.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/header.py to header.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/dssp.py to dssp.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/ciffile.py to ciffile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/pdbfile.py to pdbfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/cifheader.py to cifheader.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/emdfile.py to emdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/wwpdb.py to wwpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/waterbridges.py to waterbridges.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/transform.py to transform.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/measure.py to measure.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/contacts.py to contacts.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/norm.py to norm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/straw.py to straw.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/cluster.py to cluster.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/hic.py to hic.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_header.py to test_header.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_transform.py to test_transform.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_measure.py to test_measure.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_select.py to test_select.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/apptools.py to apptools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/ensemble.py to ensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/conformation.py to conformation.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/frame.py to frame.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajectory.py to trajectory.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajbase.py to trajbase.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajfile.py to trajfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/psffile.py to psffile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/logger.py to logger.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/checkers.py to checkers.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/legacy.py to legacy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/misctools.py to misctools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/pathtools.py to pathtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/drawtools.py to drawtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/catchall.py to catchall.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/laptools.py to laptools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/doctools.py to doctools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/seqtools.py to seqtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/eigtools.py to eigtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/settings.py to settings.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/dali.py to dali.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/cath.py to cath.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/pfam.py to pfam.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/goa.py to goa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/quartataweb.py to quartataweb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/uniprot.py to uniprot.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/pdbligands.py to pdbligands.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/ccd.py to ccd.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/bird.py to bird.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/plotting.py to plotting.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/analysis.py to analysis.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/sequence.py to sequence.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/msafile.py to msafile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/msa.py to msa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/anm.py to anm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/exanm.py to exanm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/essa.py to essa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/sampling.py to sampling.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/bbenm.py to bbenm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/adaptive.py to adaptive.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/gnm.py to gnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/gamma.py to gamma.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/plotting.py to plotting.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/nma.py to nma.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/signature.py to signature.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/entropy.py to entropy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/clustenm.py to clustenm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/modeset.py to modeset.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/compare.py to compare.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/editing.py to editing.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/perturb.py to perturb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/analysis.py to analysis.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/imanm.py to imanm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/exgnm.py to exgnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/mode.py to mode.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/pca.py to pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/bildfile.py to bildfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/rtb.py to rtb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/kdtree.py to kdtree.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/chain.py to chain.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/subset.py to subset.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/pointer.py to pointer.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/angle.py to angle.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/dihedral.py to dihedral.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/bond.py to bond.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/donor.py to donor.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/hierview.py to hierview.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atomic.py to atomic.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/fields.py to fields.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/residue.py to residue.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atomgroup.py to atomgroup.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atom.py to atom.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/segment.py to segment.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/improper.py to improper.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/acceptor.py to acceptor.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/crossterm.py to crossterm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/flags.py to flags.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atommap.py to atommap.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/selection.py to selection.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/select.py to select.cpython-311.pyc running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/ProDy-2.4.1.egg-info Skipping SOURCES.txt running install_scripts Installing evol script to /<>/debian/python3-prody/usr/bin Installing prody script to /<>/debian/python3-prody/usr/bin I: pybuild base:305: /usr/bin/python3 setup.py install --root /<>/debian/python3-prody running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /<>/debian/python3-prody/usr/lib/python3.12 creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/starfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/pdbclusters.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/fixer.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/blastpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/ccealign.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/compare.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/stride.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/header.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/dssp.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/cifheader.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/emdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/waterbridges.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/transform.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/measure.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/contacts.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/norm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/straw.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/cluster.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/hic.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_dssp.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_header.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/test_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/test_transform.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/test_measure.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3o21.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/xmlSTI.xml -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot.slx -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pca2k39_cov.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3p3w.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3hsy.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdbRTER.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/commute1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/rtb2gb1_project.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/mmcif_6yfy.cif -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ubi.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/mmcif_6zu5.cif -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pca2k39_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/hit1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pca2k39_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ejg.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot.sth -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3mht.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_examples.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_conformation.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/test_frame.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/test_dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_checkers.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_misctools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_msa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_analysis.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_msafile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_sequence.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_signature.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_enms.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_editing.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree/test_kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_hierview.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_select.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_atomic.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_fragment.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_subset.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_atommap.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_eda.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_blast.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_select.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_energy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_biomol.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_align.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/nmaoptions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/apptools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_search.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_merge.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_refine.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_coevol.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_rankorder.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_conserv.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_occupancy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_filter.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition/spectrus.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.12_prody/build/prody/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/conformation.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/frame.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajectory.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajbase.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/psffile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/logger.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles/saxs_water.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles/mod_res_map.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/checkers.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/legacy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/misctools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/drawtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/catchall.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/laptools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/doctools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/TreeConstruction.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/seqtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/eigtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/settings.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/dali.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/cath.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/pfam.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/goa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/quartataweb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/uniprot.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/pdbligands.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/ccd.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/bird.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/seqtools.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/sequence.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msafile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msatools.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msaio.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/anm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/exanm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/essa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/sampling.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/bbenm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/adaptive.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/gnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/gamma.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/rtbtools.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/nma.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/heatmapper.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/signature.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/entropy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/modeset.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/compare.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/editing.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/perturb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/smtools.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/imanm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/exgnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/mode.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/bildfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/nmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/rtb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/mechstiff.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/vmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/_CKDTree.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/chain.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/subset.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/pointer.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/angle.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/dihedral.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/bond.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/donor.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/hierview.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atomic.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/fields.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/residue.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atomgroup.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atom.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/segment.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/improper.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/acceptor.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/crossterm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/nbexclusion.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/flags.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atommap.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/selection.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/fixer.py to fixer.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/stride.py to stride.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/header.py to header.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/waterbridges.py to waterbridges.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/transform.py to transform.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/measure.py to measure.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/contacts.py to contacts.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/norm.py to norm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/straw.py to straw.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/hic.py to hic.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/apptools.py to apptools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/logger.py to logger.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/settings.py to settings.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/dali.py to dali.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/cath.py to cath.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/pfam.py to pfam.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/goa.py to goa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/bird.py to bird.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/msa.py to msa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/anm.py to anm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/essa.py to essa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/nma.py to nma.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/signature.py to signature.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/editing.py to editing.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/mode.py to mode.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/pca.py to pca.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/bildfile.py to bildfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/chain.py to chain.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/subset.py to subset.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/angle.py to angle.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/bond.py to bond.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/donor.py to donor.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/fields.py to fields.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/residue.py to residue.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atom.py to atom.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/segment.py to segment.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/improper.py to improper.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/flags.py to flags.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/selection.py to selection.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/select.py to select.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' running install_egg_info running egg_info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/ProDy-2.4.1.egg-info Skipping SOURCES.txt running install_scripts Installing evol script to /<>/debian/python3-prody/usr/bin Installing prody script to /<>/debian/python3-prody/usr/bin debian/rules override_dh_install make[1]: Entering directory '/<>' for VERSION in $(py3versions --supported); \ do \ mkdir --parents debian/python3-prody-tests/usr/lib/${VERSION}/dist-packages/prody; \ mv debian/python3-prody/usr/lib/${VERSION}/dist-packages/prody/tests debian/python3-prody-tests/usr/lib/${VERSION}/dist-packages/prody; \ done dh_install make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/proteins/ccealign.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 8e4faa1acca5afcce478c50b7f18ec2022219e86 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/proteins/ccealign.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9f0508850a014b74c41102bb40faf9173fbf1f38 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msaio.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 48f64570cfd028028836e560e350ea61a7c9e669 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/seqtools.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0624e4fb16383cfc215cf1e273b3fc74628b4efb debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/seqtools.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 645cc7a4a6fcd83fe61d96de53d7868a019d236c debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msatools.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 dd24aacd941f6d078b08ab667d6255efa0b79c80 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msatools.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5e5ac176169e07b7937c1ccd7129e658afbb84ea debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msaio.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9a1629ddb7bec7d098d83719e442815ee1b8b9eb debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/rtbtools.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 34232ea0906481edd10ccb3a381919670ff1a639 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/smtools.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5e843d9e704d2445fbfd837dabfd2fcc6c831229 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/rtbtools.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a2d200e43b2ab20704417160b034feb2d30ea2c5 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/smtools.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2f999aea5d86aaca3c17cfd92a8b34fba668594b debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/kdtree/_CKDTree.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5b9c1d60d485a5ab2e29ba661d892516345ba96b debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/kdtree/_CKDTree.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a2b252cbaa15e64718451fb59cb654c781e11909 dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_numpy3 -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Provides field of package python3-prody: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-prody: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-prody-dbgsym (in debian/.debhelper/python3-prody/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python3-prody (in debian/python3-prody); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-prody/DEBIAN/control, package python3-prody, directory debian/python3-prody pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-prody ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-prody' in '../python3-prody_2.4.1+dfsg-2_riscv64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-prody/dbgsym-root/DEBIAN/control, package python3-prody-dbgsym, directory debian/.debhelper/python3-prody/dbgsym-root dpkg-deb: building package 'python3-prody-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-prody/python3-prody-dbgsym_2.4.1+dfsg-2_riscv64.deb'. Renaming python3-prody-dbgsym_2.4.1+dfsg-2_riscv64.deb to python3-prody-dbgsym_2.4.1+dfsg-2_riscv64.ddeb dpkg-genbuildinfo --build=any -O../prody_2.4.1+dfsg-2_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../prody_2.4.1+dfsg-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-02-16T00:30:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ prody_2.4.1+dfsg-2_riscv64.changes: ----------------------------------- Format: 1.8 Date: Tue, 13 Feb 2024 02:16:27 -0500 Source: prody Binary: python3-prody Built-For-Profiles: noudeb Architecture: riscv64 Version: 2.4.1+dfsg-2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: python3-prody - Python package for protein dynamics analysis Closes: 1028722 Changes: prody (2.4.1+dfsg-2) unstable; urgency=medium . * Skip test with equals on a vector (Closes: #1028722). Thanks Santiago Vila. * Update manpages. 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/<>/prody_2.4.1+dfsg-2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: prody Binary: python3-prody python3-prody-dbgsym Architecture: riscv64 Version: 2.4.1+dfsg-2 Checksums-Md5: c3cf57f3ca839f6d65356eb386ec9f9c 317432 python3-prody-dbgsym_2.4.1+dfsg-2_riscv64.ddeb bfc4c761a32fe5afc5dc1b7eb05dfc4f 995202 python3-prody_2.4.1+dfsg-2_riscv64.deb Checksums-Sha1: b86c8b69527bef42754abb9b40e99598acdead4c 317432 python3-prody-dbgsym_2.4.1+dfsg-2_riscv64.ddeb 3f3d868b4a452491c6b1c1ba681a5d88bac85ddf 995202 python3-prody_2.4.1+dfsg-2_riscv64.deb Checksums-Sha256: eaf3f702b034087a6eec312d18552c06c1af8dc50563dd23ed91c84ce1d4d124 317432 python3-prody-dbgsym_2.4.1+dfsg-2_riscv64.ddeb b3e5d7008bc6a4153ef4fabf5a8f1f6cd794b524f2a3d95b9d29e80a5bcf7007 995202 python3-prody_2.4.1+dfsg-2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Fri, 16 Feb 2024 00:30:23 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu6), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.42-2ubuntu1), binutils-common (= 2.42-2ubuntu1), binutils-riscv64-linux-gnu (= 2.42-2ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu3), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-13ubuntu1), cpp-13-riscv64-linux-gnu (= 13.2.0-13ubuntu1), cpp-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.86), debhelper (= 13.13ubuntu1), debianutils (= 5.16), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20231223), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.4ubuntu3), dpkg-dev (= 1.22.4ubuntu3), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig-config (= 2.14.2-6ubuntu1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-extra (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-urw-base35 (= 20200910-7), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-13ubuntu1), g++-13-riscv64-linux-gnu (= 13.2.0-13ubuntu1), g++-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-13ubuntu1), gcc-13-base (= 13.2.0-13ubuntu1), gcc-13-riscv64-linux-gnu (= 13.2.0-13ubuntu1), gcc-14-base (= 14-20240201-3ubuntu1), gcc-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-4ubuntu1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240201-3ubuntu1), libatomic1 (= 14-20240201-3ubuntu1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2), libaudit1 (= 1:3.1.2-2), libbinutils (= 2.42-2ubuntu1), libblas3 (= 3.12.0-3), libblkid1 (= 2.39.2-6ubuntu1), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.8-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.39-0ubuntu1), libc-dev-bin (= 2.39-0ubuntu1), libc6 (= 2.39-0ubuntu1), libc6-dev (= 2.39-0ubuntu1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 14-20240201-3ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-2ubuntu1), libctf0 (= 2.42-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.13ubuntu1), libdeflate0 (= 1.19-1), libdpkg-perl (= 1.22.4ubuntu3), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.6.0-1), libexpat1-dev (= 2.6.0-1), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.14.2-6ubuntu1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.13.2+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-13ubuntu1), libgcc-s1 (= 14-20240201-3ubuntu1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgfortran5 (= 14-20240201-3ubuntu1), libglib2.0-0 (= 2.79.1-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 14-20240201-3ubuntu1), libgpg-error0 (= 1.47-3build1), libgraphite2-3 (= 1.3.14-2), libgssapi-krb5-2 (= 1.20.1-5build1), libharfbuzz0b (= 8.3.0-2), libicu74 (= 74.2-1ubuntu1), libimagequant0 (= 2.18.0-1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 7.2.6-4), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblapack3 (= 3.12.0-3), liblbfgsb0 (= 3.0+dfsg.4-1), liblcms2-2 (= 2.14-2), liblerc4 (= 4.0.0+ds-4ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-2), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20240113-1ubuntu1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libopenjp2-7 (= 2.5.0-2), libpam-modules (= 1.5.2-9.1ubuntu2), libpam-modules-bin (= 1.5.2-9.1ubuntu2), libpam-runtime (= 1.5.2-9.1ubuntu2), libpam0g (= 1.5.2-9.1ubuntu2), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38 (= 5.38.2-3), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.42-1), libpython3-all-dev (= 3.12.1-0ubuntu1), libpython3-dev (= 3.12.1-0ubuntu1), libpython3-stdlib (= 3.12.1-0ubuntu1), libpython3.11 (= 3.11.8-1), libpython3.11-dev (= 3.11.8-1), libpython3.11-minimal (= 3.11.8-1), libpython3.11-stdlib (= 3.11.8-1), libpython3.12 (= 3.12.2-1), libpython3.12-dev (= 3.12.2-1), libpython3.12-minimal (= 3.12.2-1), libpython3.12-stdlib (= 3.12.2-1), libraqm0 (= 0.10.1-1), libreadline8 (= 8.2-3), libselinux1 (= 3.5-2build1), libsframe1 (= 2.42-2ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsmartcols1 (= 2.39.2-6ubuntu1), libsqlite3-0 (= 3.45.1-1), libssl3 (= 3.0.10-1ubuntu4), libstdc++-13-dev (= 13.2.0-13ubuntu1), libstdc++6 (= 14-20240201-3ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-3ubuntu2), libtiff6 (= 4.5.1+git230720-3ubuntu1), libtinfo6 (= 6.4+20240113-1ubuntu1), libtirpc-common (= 1.3.4+ds-1build1), libtirpc-dev (= 1.3.4+ds-1build1), libtirpc3 (= 1.3.4+ds-1build1), libtool (= 2.4.7-7), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-3ubuntu2), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libwebp7 (= 1.3.2-0.3), libwebpdemux2 (= 1.3.2-0.3), libwebpmux3 (= 1.3.2-0.3), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxml2 (= 2.9.14+dfsg-1.3ubuntu1), libxrender1 (= 1:0.9.10-1.1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 46), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), netbase (= 6.4), patch (= 2.7.6-7build2), perl (= 5.38.2-3), perl-base (= 5.38.2-3), perl-modules-5.38 (= 5.38.2-3), po-debconf (= 1.0.21+nmu1), python3 (= 3.12.1-0ubuntu1), python3-all (= 3.12.1-0ubuntu1), python3-all-dev (= 3.12.1-0ubuntu1), python3-biopython (= 1.81+dfsg-3), python3-cairo (= 1.25.1-2), python3-chardet (= 5.2.0+dfsg-1), python3-decorator (= 5.1.1-5), python3-dev (= 3.12.1-0ubuntu1), python3-distutils (= 3.11.5-1), python3-freetype (= 2.4.0-1), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.12.1-0ubuntu1), python3-numpy (= 1:1.24.2-2), python3-pil (= 10.2.0-1), python3-pkg-resources (= 68.1.2-2), python3-pyparsing (= 3.1.1-1), python3-reportlab (= 4.1.0-1), python3-rlpycairo (= 0.3.0-3), python3-scipy (= 1.10.1-10build1), python3-setuptools (= 68.1.2-2), python3-zombie-imp (= 0.0.2-2), python3.11 (= 3.11.8-1), python3.11-dev (= 3.11.8-1), python3.11-minimal (= 3.11.8-1), python3.12 (= 3.12.2-1), python3.12-dev (= 3.12.2-1), python3.12-minimal (= 3.12.2-1), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.22), sgml-base (= 1.31), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.35+dfsg-3), tzdata (= 2024a-1ubuntu1), util-linux (= 2.39.2-6ubuntu1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xml-core (= 0.19), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1707808587" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-prody_2.4.1+dfsg-2_riscv64.deb -------------------------------------- new Debian package, version 2.0. size 995202 bytes: control archive=5841 bytes. 1035 bytes, 18 lines control 17172 bytes, 184 lines md5sums 277 bytes, 12 lines * postinst #!/bin/sh 390 bytes, 12 lines * prerm #!/bin/sh Package: python3-prody Source: prody Version: 2.4.1+dfsg-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 3994 Depends: python3 (<< 3.13), python3 (>= 3.11~), python3-biopython, python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3-pkg-resources, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.27), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: https://github.com/prody/ProDy Description: Python package for protein dynamics analysis ProDy is a free and open-source Python package for protein structure, dynamics, and sequence analysis. It allows for comparative analysis and modeling of protein structural dynamics and sequence co-evolution. Fast and flexible ProDy API is for interactive usage as well as application development. 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+------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 511564 Build-Time: 391 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 1144 Job: prody_2.4.1+dfsg-2.dsc Machine Architecture: riscv64 Package: prody Package-Time: 1572 Source-Version: 2.4.1+dfsg-2 Space: 511564 Status: successful Version: 2.4.1+dfsg-2 -------------------------------------------------------------------------------- Finished at 2024-02-16T00:30:28Z Build needed 00:26:12, 511564k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27776641 Scanning for processes to kill in build PACKAGEBUILD-27776641