https://launchpad.net/ubuntu/+source/progressivemauve/1.2.0+4713+dfsg-5build2/+build/27579289 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-riscv64-020 5.19.0-1021-generic #23~22.04.1-Ubuntu SMP Thu Jun 22 12:49:35 UTC 2023 riscv64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu22.04.1 python3-lpbuildd_235~645~ubuntu22.04.1 sbuild_0.81.2ubuntu6 git-build-recipe_0.3.6 git_1:2.34.1-1ubuntu1.10 dpkg-dev_1.21.1ubuntu2.2 python3-debian_0.1.43ubuntu1.1. Syncing the system clock with the buildd NTP service... 20 Dec 10:49:37 ntpdate[2289]: adjust time server 10.211.37.1 offset -0.015631 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27579289 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-27579289 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27579289 Starting target for build PACKAGEBUILD-27579289 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27579289 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27579289 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27579289 Updating target for build PACKAGEBUILD-27579289 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1342 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6040 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [105 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [47.4 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [412 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [175 kB] Fetched 23.4 MB in 25s (947 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-riscv64-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 128 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 106 MB of archives. After this operation, 7674 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl-dev riscv64 1.3.0-3 [135 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main riscv64 libc6-dev riscv64 2.38-3ubuntu1 [3401 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main riscv64 libc-dev-bin riscv64 2.38-3ubuntu1 [19.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc-dev riscv64 1.3.4+ds-1 [344 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main riscv64 libgssapi-krb5-2 riscv64 1.20.1-5build1 [148 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 libkrb5-3 riscv64 1.20.1-5build1 [377 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main riscv64 libk5crypto3 riscv64 1.20.1-5build1 [106 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 libkrb5support0 riscv64 1.20.1-5build1 [35.9 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main riscv64 libssl3 riscv64 3.0.10-1ubuntu3 [1693 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc3 riscv64 1.3.4+ds-1 [88.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl2 riscv64 1.3.0-3 [42.0 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 linux-libc-dev riscv64 6.6.0-14.14 [1550 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 libcc1-0 riscv64 13.2.0-9ubuntu1 [45.5 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf0 riscv64 2.41.50.20231214-1ubuntu1 [85.6 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf-nobfd0 riscv64 2.41.50.20231214-1ubuntu1 [89.4 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-riscv64-linux-gnu riscv64 2.41.50.20231214-1ubuntu1 [918 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main riscv64 libbinutils riscv64 2.41.50.20231214-1ubuntu1 [490 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-common riscv64 2.41.50.20231214-1ubuntu1 [223 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils riscv64 2.41.50.20231214-1ubuntu1 [3000 B] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13-base riscv64 13.2.0-9ubuntu1 [45.2 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-s1 riscv64 13.2.0-9ubuntu1 [57.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 libgomp1 riscv64 13.2.0-9ubuntu1 [139 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 libatomic1 riscv64 13.2.0-9ubuntu1 [9504 B] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libasan8 riscv64 13.2.0-9ubuntu1 [2510 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-13 riscv64 13.2.0-9ubuntu1 [11.9 MB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++-13-dev riscv64 13.2.0-9ubuntu1 [5460 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-13-dev riscv64 13.2.0-9ubuntu1 [3140 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13 riscv64 13.2.0-9ubuntu1 [20.8 MB] Get:30 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-13 riscv64 13.2.0-9ubuntu1 [10.5 MB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++6 riscv64 13.2.0-9ubuntu1 [785 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 zlib1g riscv64 1:1.3.dfsg-3ubuntu1 [61.1 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main riscv64 libsframe1 riscv64 2.41.50.20231214-1ubuntu1 [14.4 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2 [349 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main riscv64 libc6 riscv64 2.38-3ubuntu1 [2742 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 base-files riscv64 13ubuntu5 [73.4 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 debianutils riscv64 5.14 [88.8 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 bash riscv64 5.2.21-2ubuntu1 [735 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main riscv64 bsdutils riscv64 1:2.39.2-6ubuntu1 [113 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main riscv64 coreutils riscv64 9.4-2ubuntu1 [1471 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main riscv64 diffutils riscv64 1:3.10-1 [180 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma5 riscv64 5.4.5-0.1 [128 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main riscv64 libapparmor1 riscv64 4.0.0~alpha2-0ubuntu7 [50.0 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit-common all 1:3.1.2-1 [5512 B] Get:45 http://ftpmaster.internal/ubuntu noble/main riscv64 libcap-ng0 riscv64 0.8.3-3 [15.2 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit1 riscv64 1:3.1.2-1 [47.5 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main riscv64 libblkid1 riscv64 2.39.2-6ubuntu1 [199 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main riscv64 libkmod2 riscv64 30+20230601-2ubuntu1 [52.6 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-8-0 riscv64 10.42-4ubuntu1 [149 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main riscv64 libselinux1 riscv64 3.5-1build2 [83.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main riscv64 libmount1 riscv64 2.39.2-6ubuntu1 [207 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam0g riscv64 1.5.2-9.1ubuntu1 [65.9 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libseccomp2 riscv64 2.5.4-2ubuntu1 [51.5 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-sysv riscv64 255-1ubuntu1 [11.7 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-dev all 255-1ubuntu1 [98.5 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd riscv64 255-1ubuntu1 [3565 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd-shared riscv64 255-1ubuntu1 [2175 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-4 [23.7 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 libuuid1 riscv64 2.39.2-6ubuntu1 [36.2 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 libcryptsetup12 riscv64 2:2.6.1-5ubuntu1 [246 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main riscv64 libfdisk1 riscv64 2.39.2-6ubuntu1 [234 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main riscv64 mount riscv64 2.39.2-6ubuntu1 [150 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd0 riscv64 255-1ubuntu1 [452 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libudev1 riscv64 255-1ubuntu1 [176 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 libxxhash0 riscv64 0.8.2-2 [43.7 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapt-pkg6.0 riscv64 2.7.7 [989 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 tar riscv64 1.34+dfsg-1.3ubuntu1 [349 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg riscv64 1.22.2ubuntu1 [1316 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main riscv64 grep riscv64 3.11-3 [167 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main riscv64 login riscv64 1:4.13+dfsg1-3ubuntu1 [202 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main riscv64 ncurses-bin riscv64 6.4+20231209-1 [184 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main riscv64 libperl5.36 riscv64 5.36.0-10ubuntu1 [4337 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 perl riscv64 5.36.0-10ubuntu1 [235 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main riscv64 perl-base riscv64 5.36.0-10ubuntu1 [1760 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main riscv64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 libdb5.3 riscv64 5.3.28+dfsg2-4 [783 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main riscv64 libgdbm6 riscv64 1.23-5 [34.3 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main riscv64 libgdbm-compat4 riscv64 1.23-5 [6414 B] Get:79 http://ftpmaster.internal/ubuntu noble/main riscv64 util-linux riscv64 2.39.2-6ubuntu1 [1314 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 libdebconfclient0 riscv64 0.271ubuntu1 [11.1 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 base-passwd riscv64 3.6.3 [52.1 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 libc-bin riscv64 2.38-3ubuntu1 [601 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 ncurses-base all 6.4+20231209-1 [25.2 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main riscv64 sysvinit-utils riscv64 3.08-3ubuntu1 [34.5 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt riscv64 2.7.7 [1338 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt-utils riscv64 2.7.7 [225 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main riscv64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main riscv64 libunistring5 riscv64 1.1-2 [544 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main riscv64 libidn2-0 riscv64 2.3.4-1build1 [99.3 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main riscv64 libffi8 riscv64 3.4.4-2 [22.5 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main riscv64 libp11-kit0 riscv64 0.25.3-2ubuntu2 [308 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 libgnutls30 riscv64 3.8.1-4ubuntu6 [995 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam-modules-bin riscv64 1.5.2-9.1ubuntu1 [50.2 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam-modules riscv64 1.5.2-9.1ubuntu1 [286 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 init riscv64 1.66ubuntu1 [6190 B] Get:97 http://ftpmaster.internal/ubuntu noble/main riscv64 libsmartcols1 riscv64 2.39.2-6ubuntu1 [142 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main riscv64 uuid-runtime riscv64 2.39.2-6ubuntu1 [48.3 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:100 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error0 riscv64 1.47-3build1 [75.7 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main riscv64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main riscv64 libsemanage-common all 3.5-1build1 [9982 B] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 libsepol2 riscv64 3.5-2 [312 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main riscv64 libsemanage2 riscv64 3.5-1build1 [97.7 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main riscv64 libncursesw6 riscv64 6.4+20231209-1 [150 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main riscv64 libtinfo6 riscv64 6.4+20231209-1 [106 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main riscv64 passwd riscv64 1:4.13+dfsg1-3ubuntu1 [857 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main riscv64 libproc2-0 riscv64 2:4.0.4-2ubuntu1 [58.9 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main riscv64 mawk riscv64 1.3.4.20231126-1 [126 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main riscv64 procps riscv64 2:4.0.4-2ubuntu1 [712 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main riscv64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main riscv64 readline-common all 8.2-3 [56.2 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main riscv64 libreadline8 riscv64 8.2-3 [151 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main riscv64 libsqlite3-0 riscv64 3.44.2-1 [703 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main riscv64 openssl riscv64 3.0.10-1ubuntu3 [1170 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main riscv64 bsdextrautils riscv64 2.39.2-6ubuntu1 [91.3 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main riscv64 libpng16-16 riscv64 1.6.40-2 [189 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main riscv64 xz-utils riscv64 5.4.5-0.1 [268 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main riscv64 g++ riscv64 4:13.2.0-2ubuntu1 [1110 B] Get:121 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc riscv64 4:13.2.0-2ubuntu1 [5192 B] Get:122 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp riscv64 4:13.2.0-2ubuntu1 [29.0 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg-dev all 1.22.2ubuntu1 [1147 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdpkg-perl all 1.22.2ubuntu1 [285 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main riscv64 lto-disabled-list all 44 [12.4 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main riscv64 libfakeroot riscv64 1.32.2-1 [33.3 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main riscv64 fakeroot riscv64 1.32.2-1 [77.8 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main riscv64 optipng riscv64 0.7.7-3 [86.9 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main riscv64 pinentry-curses riscv64 1.2.1-3ubuntu1 [39.5 kB] Preconfiguring packages ... Fetched 106 MB in 13s (8109 kB/s) (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../00-libnsl-dev_1.3.0-3_riscv64.deb ... Unpacking libnsl-dev:riscv64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../01-libc6-dev_2.38-3ubuntu1_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../02-libc-dev-bin_2.38-3ubuntu1_riscv64.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../03-libtirpc-common_1.3.4+ds-1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1_riscv64.deb ... Unpacking libtirpc-dev:riscv64 (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-5build1_riscv64.deb ... Unpacking libgssapi-krb5-2:riscv64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../06-libkrb5-3_1.20.1-5build1_riscv64.deb ... Unpacking libkrb5-3:riscv64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../07-libk5crypto3_1.20.1-5build1_riscv64.deb ... Unpacking libk5crypto3:riscv64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../08-libkrb5support0_1.20.1-5build1_riscv64.deb ... Unpacking libkrb5support0:riscv64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../09-libssl3_3.0.10-1ubuntu3_riscv64.deb ... Unpacking libssl3:riscv64 (3.0.10-1ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../10-libtirpc3_1.3.4+ds-1_riscv64.deb ... Unpacking libtirpc3:riscv64 (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../11-libnsl2_1.3.0-3_riscv64.deb ... Unpacking libnsl2:riscv64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../12-linux-libc-dev_6.6.0-14.14_riscv64.deb ... Unpacking linux-libc-dev:riscv64 (6.6.0-14.14) over (6.5.0-9.9) ... Preparing to unpack .../13-libcc1-0_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libcc1-0:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../14-libctf0_2.41.50.20231214-1ubuntu1_riscv64.deb ... Unpacking libctf0:riscv64 (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../15-libctf-nobfd0_2.41.50.20231214-1ubuntu1_riscv64.deb ... Unpacking libctf-nobfd0:riscv64 (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../16-binutils-riscv64-linux-gnu_2.41.50.20231214-1ubuntu1_riscv64.deb ... Unpacking binutils-riscv64-linux-gnu (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../17-libbinutils_2.41.50.20231214-1ubuntu1_riscv64.deb ... Unpacking libbinutils:riscv64 (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../18-binutils-common_2.41.50.20231214-1ubuntu1_riscv64.deb ... Unpacking binutils-common:riscv64 (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../19-binutils_2.41.50.20231214-1ubuntu1_riscv64.deb ... Unpacking binutils (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../20-gcc-13-base_13.2.0-9ubuntu1_riscv64.deb ... Unpacking gcc-13-base:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Setting up gcc-13-base:riscv64 (13.2.0-9ubuntu1) ... (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libgcc-s1:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:riscv64 (13.2.0-9ubuntu1) ... (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../0-libgomp1_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libgomp1:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../1-libatomic1_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libatomic1:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../2-libasan8_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libasan8:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../3-g++-13_13.2.0-9ubuntu1_riscv64.deb ... Unpacking g++-13 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../4-libstdc++-13-dev_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libstdc++-13-dev:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../5-libgcc-13-dev_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libgcc-13-dev:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../6-gcc-13_13.2.0-9ubuntu1_riscv64.deb ... Unpacking gcc-13 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../7-cpp-13_13.2.0-9ubuntu1_riscv64.deb ... Unpacking cpp-13 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../8-libstdc++6_13.2.0-9ubuntu1_riscv64.deb ... Unpacking libstdc++6:riscv64 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libstdc++6:riscv64 (13.2.0-9ubuntu1) ... (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3ubuntu1_riscv64.deb ... Unpacking zlib1g:riscv64 (1:1.3.dfsg-3ubuntu1) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:riscv64 (1:1.3.dfsg-3ubuntu1) ... (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../libsframe1_2.41.50.20231214-1ubuntu1_riscv64.deb ... Unpacking libsframe1:riscv64 (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../libzstd1_1.5.5+dfsg2-2_riscv64.deb ... Unpacking libzstd1:riscv64 (1.5.5+dfsg2-2) over (1.5.5+dfsg2-1ubuntu2) ... Setting up libzstd1:riscv64 (1.5.5+dfsg2-2) ... (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../libc6_2.38-3ubuntu1_riscv64.deb ... Unpacking libc6:riscv64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Setting up libc6:riscv64 (2.38-3ubuntu1) ... (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu5_riscv64.deb ... Unpacking base-files (13ubuntu5) over (13ubuntu3) ... Setting up base-files (13ubuntu5) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../debianutils_5.14_riscv64.deb ... Unpacking debianutils (5.14) over (5.8-1) ... Setting up debianutils (5.14) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2ubuntu1_riscv64.deb ... Unpacking bash (5.2.21-2ubuntu1) over (5.2.15-2ubuntu1) ... Setting up bash (5.2.21-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.2-6ubuntu1_riscv64.deb ... Unpacking bsdutils (1:2.39.2-6ubuntu1) over (1:2.39.1-4ubuntu2) ... Setting up bsdutils (1:2.39.2-6ubuntu1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-2ubuntu1_riscv64.deb ... Unpacking coreutils (9.4-2ubuntu1) over (9.1-1ubuntu2) ... Setting up coreutils (9.4-2ubuntu1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_riscv64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.5-0.1_riscv64.deb ... Unpacking liblzma5:riscv64 (5.4.5-0.1) over (5.4.1-0.2) ... Setting up liblzma5:riscv64 (5.4.5-0.1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libapparmor1_4.0.0~alpha2-0ubuntu7_riscv64.deb ... Unpacking libapparmor1:riscv64 (4.0.0~alpha2-0ubuntu7) over (4.0.0~alpha2-0ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a3.1.2-1_all.deb ... Unpacking libaudit-common (1:3.1.2-1) over (1:3.1.1-1) ... Setting up libaudit-common (1:3.1.2-1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-3_riscv64.deb ... Unpacking libcap-ng0:riscv64 (0.8.3-3) over (0.8.3-1build2) ... Setting up libcap-ng0:riscv64 (0.8.3-3) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-1_riscv64.deb ... Unpacking libaudit1:riscv64 (1:3.1.2-1) over (1:3.1.1-1) ... Setting up libaudit1:riscv64 (1:3.1.2-1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.2-6ubuntu1_riscv64.deb ... Unpacking libblkid1:riscv64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libblkid1:riscv64 (2.39.2-6ubuntu1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libkmod2_30+20230601-2ubuntu1_riscv64.deb ... Unpacking libkmod2:riscv64 (30+20230601-2ubuntu1) over (30+20230519-1ubuntu3) ... Preparing to unpack .../libpcre2-8-0_10.42-4ubuntu1_riscv64.deb ... Unpacking libpcre2-8-0:riscv64 (10.42-4ubuntu1) over (10.42-4) ... Setting up libpcre2-8-0:riscv64 (10.42-4ubuntu1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1build2_riscv64.deb ... Unpacking libselinux1:riscv64 (3.5-1build2) over (3.5-1) ... Setting up libselinux1:riscv64 (3.5-1build2) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.2-6ubuntu1_riscv64.deb ... Unpacking libmount1:riscv64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libmount1:riscv64 (2.39.2-6ubuntu1) ... (Reading database ... 13558 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-9.1ubuntu1_riscv64.deb ... Unpacking libpam0g:riscv64 (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam0g:riscv64 (1.5.2-9.1ubuntu1) ... (Reading database ... 13557 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-2ubuntu1_riscv64.deb ... Unpacking libseccomp2:riscv64 (2.5.4-2ubuntu1) over (2.5.4-1ubuntu3) ... Preparing to unpack .../systemd-sysv_255-1ubuntu1_riscv64.deb ... Unpacking systemd-sysv (255-1ubuntu1) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-dev_255-1ubuntu1_all.deb ... Unpacking systemd-dev (255-1ubuntu1) over (253.5-1ubuntu6) ... Setting up libssl3:riscv64 (3.0.10-1ubuntu3) ... (Reading database ... 13599 files and directories currently installed.) Preparing to unpack .../systemd_255-1ubuntu1_riscv64.deb ... Unpacking systemd (255-1ubuntu1) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd-shared_255-1ubuntu1_riscv64.deb ... Unpacking libsystemd-shared:riscv64 (255-1ubuntu1) over (253.5-1ubuntu6) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-4_riscv64.deb ... Unpacking libargon2-1:riscv64 (0~20190702+dfsg-4) over (0~20190702+dfsg-3) ... Preparing to unpack .../libuuid1_2.39.2-6ubuntu1_riscv64.deb ... Unpacking libuuid1:riscv64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libuuid1:riscv64 (2.39.2-6ubuntu1) ... (Reading database ... 13720 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.6.1-5ubuntu1_riscv64.deb ... Unpacking libcryptsetup12:riscv64 (2:2.6.1-5ubuntu1) over (2:2.6.1-4ubuntu3) ... Preparing to unpack .../libfdisk1_2.39.2-6ubuntu1_riscv64.deb ... Unpacking libfdisk1:riscv64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../mount_2.39.2-6ubuntu1_riscv64.deb ... Unpacking mount (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../libsystemd0_255-1ubuntu1_riscv64.deb ... Unpacking libsystemd0:riscv64 (255-1ubuntu1) over (253.5-1ubuntu6) ... Setting up libsystemd0:riscv64 (255-1ubuntu1) ... (Reading database ... 13720 files and directories currently installed.) Preparing to unpack .../libudev1_255-1ubuntu1_riscv64.deb ... Unpacking libudev1:riscv64 (255-1ubuntu1) over (253.5-1ubuntu6) ... Setting up libudev1:riscv64 (255-1ubuntu1) ... (Reading database ... 13720 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2_riscv64.deb ... Unpacking libxxhash0:riscv64 (0.8.2-2) over (0.8.1-1) ... Setting up libxxhash0:riscv64 (0.8.2-2) ... (Reading database ... 13720 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.7_riscv64.deb ... Unpacking libapt-pkg6.0:riscv64 (2.7.7) over (2.7.3) ... Setting up libapt-pkg6.0:riscv64 (2.7.7) ... (Reading database ... 13720 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.3ubuntu1_riscv64.deb ... Unpacking tar (1.34+dfsg-1.3ubuntu1) over (1.34+dfsg-1.2ubuntu1) ... Setting up tar (1.34+dfsg-1.3ubuntu1) ... (Reading database ... 13720 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.2ubuntu1_riscv64.deb ... Unpacking dpkg (1.22.2ubuntu1) over (1.22.0ubuntu1) ... Setting up dpkg (1.22.2ubuntu1) ... (Reading database ... 13718 files and directories currently installed.) Preparing to unpack .../grep_3.11-3_riscv64.deb ... Unpacking grep (3.11-3) over (3.11-2) ... Setting up grep (3.11-3) ... (Reading database ... 13718 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-3ubuntu1_riscv64.deb ... Unpacking login (1:4.13+dfsg1-3ubuntu1) over (1:4.13+dfsg1-1ubuntu1) ... Setting up login (1:4.13+dfsg1-3ubuntu1) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... 13718 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20231209-1_riscv64.deb ... Unpacking ncurses-bin (6.4+20231209-1) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20231209-1) ... (Reading database ... 13718 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-10ubuntu1_riscv64.deb ... Unpacking libperl5.36:riscv64 (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../perl_5.36.0-10ubuntu1_riscv64.deb ... Unpacking perl (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../perl-base_5.36.0-10ubuntu1_riscv64.deb ... Unpacking perl-base (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.36.0-10ubuntu1) ... (Reading database ... 13718 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-10ubuntu1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-4_riscv64.deb ... Unpacking libdb5.3:riscv64 (5.3.28+dfsg2-4) over (5.3.28+dfsg2-2) ... Setting up libdb5.3:riscv64 (5.3.28+dfsg2-4) ... (Reading database ... 13718 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.23-5_riscv64.deb ... Unpacking libgdbm6:riscv64 (1.23-5) over (1.23-3) ... Preparing to unpack .../libgdbm-compat4_1.23-5_riscv64.deb ... Unpacking libgdbm-compat4:riscv64 (1.23-5) over (1.23-3) ... Preparing to unpack .../util-linux_2.39.2-6ubuntu1_riscv64.deb ... Unpacking util-linux (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up util-linux (2.39.2-6ubuntu1) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271ubuntu1_riscv64.deb ... Unpacking libdebconfclient0:riscv64 (0.271ubuntu1) over (0.270ubuntu1) ... Setting up libdebconfclient0:riscv64 (0.271ubuntu1) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_riscv64.deb ... Unpacking base-passwd (3.6.3) over (3.6.1) ... Setting up base-passwd (3.6.3) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../libc-bin_2.38-3ubuntu1_riscv64.deb ... Unpacking libc-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Setting up libc-bin (2.38-3ubuntu1) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20231209-1_all.deb ... Unpacking ncurses-base (6.4+20231209-1) over (6.4+20230625-2) ... Setting up ncurses-base (6.4+20231209-1) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-3ubuntu1_riscv64.deb ... Unpacking sysvinit-utils (3.08-3ubuntu1) over (3.07-1ubuntu1) ... Setting up sysvinit-utils (3.08-3ubuntu1) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.7_riscv64.deb ... Unpacking apt (2.7.7) over (2.7.3) ... Setting up apt (2.7.7) ... (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../apt-utils_2.7.7_riscv64.deb ... Unpacking apt-utils (2.7.7) over (2.7.3) ... Preparing to unpack .../ubuntu-keyring_2023.11.28.1_all.deb ... Unpacking ubuntu-keyring (2023.11.28.1) over (2021.03.26) ... Setting up ubuntu-keyring (2023.11.28.1) ... Selecting previously unselected package libunistring5:riscv64. (Reading database ... 13719 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_riscv64.deb ... Unpacking libunistring5:riscv64 (1.1-2) ... Setting up libunistring5:riscv64 (1.1-2) ... (Reading database ... 13724 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.4-1build1_riscv64.deb ... Unpacking libidn2-0:riscv64 (2.3.4-1build1) over (2.3.4-1) ... Setting up libidn2-0:riscv64 (2.3.4-1build1) ... (Reading database ... 13724 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-2_riscv64.deb ... Unpacking libffi8:riscv64 (3.4.4-2) over (3.4.4-1) ... Setting up libffi8:riscv64 (3.4.4-2) ... (Reading database ... 13724 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-2ubuntu2_riscv64.deb ... Unpacking libp11-kit0:riscv64 (0.25.3-2ubuntu2) over (0.25.0-4ubuntu1) ... Setting up libp11-kit0:riscv64 (0.25.3-2ubuntu2) ... (Reading database ... 13724 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.1-4ubuntu6_riscv64.deb ... Unpacking libgnutls30:riscv64 (3.8.1-4ubuntu6) over (3.8.1-4ubuntu1) ... Setting up libgnutls30:riscv64 (3.8.1-4ubuntu6) ... (Reading database ... 13725 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-9.1ubuntu1_riscv64.deb ... Unpacking libpam-modules-bin (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-modules-bin (1.5.2-9.1ubuntu1) ... (Reading database ... 13724 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-9.1ubuntu1_riscv64.deb ... Unpacking libpam-modules:riscv64 (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-modules:riscv64 (1.5.2-9.1ubuntu1) ... Setting up libapparmor1:riscv64 (4.0.0~alpha2-0ubuntu7) ... Setting up libargon2-1:riscv64 (0~20190702+dfsg-4) ... Setting up libcryptsetup12:riscv64 (2:2.6.1-5ubuntu1) ... Setting up libfdisk1:riscv64 (2.39.2-6ubuntu1) ... Setting up libkmod2:riscv64 (30+20230601-2ubuntu1) ... Setting up libseccomp2:riscv64 (2.5.4-2ubuntu1) ... Setting up libsystemd-shared:riscv64 (255-1ubuntu1) ... Setting up systemd-dev (255-1ubuntu1) ... Setting up mount (2.39.2-6ubuntu1) ... Setting up systemd (255-1ubuntu1) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255-1ubuntu1) ... (Reading database ... 13723 files and directories currently installed.) Preparing to unpack .../init_1.66ubuntu1_riscv64.deb ... Unpacking init (1.66ubuntu1) over (1.65.2ubuntu1) ... Preparing to unpack .../libsmartcols1_2.39.2-6ubuntu1_riscv64.deb ... Unpacking libsmartcols1:riscv64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libsmartcols1:riscv64 (2.39.2-6ubuntu1) ... (Reading database ... 13724 files and directories currently installed.) Preparing to unpack .../uuid-runtime_2.39.2-6ubuntu1_riscv64.deb ... Unpacking uuid-runtime (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../libgpg-error-l10n_1.47-3build1_all.deb ... Unpacking libgpg-error-l10n (1.47-3build1) over (1.47-2) ... Preparing to unpack .../libgpg-error0_1.47-3build1_riscv64.deb ... Unpacking libgpg-error0:riscv64 (1.47-3build1) over (1.47-2) ... Setting up libgpg-error0:riscv64 (1.47-3build1) ... (Reading database ... 13724 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-9.1ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-runtime (1.5.2-9.1ubuntu1) ... (Reading database ... 13723 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1build1_all.deb ... Unpacking libsemanage-common (3.5-1build1) over (3.5-1) ... Setting up libsemanage-common (3.5-1build1) ... (Reading database ... 13723 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_riscv64.deb ... Unpacking libsepol2:riscv64 (3.5-2) over (3.5-1) ... Setting up libsepol2:riscv64 (3.5-2) ... (Reading database ... 13723 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1build1_riscv64.deb ... Unpacking libsemanage2:riscv64 (3.5-1build1) over (3.5-1) ... Setting up libsemanage2:riscv64 (3.5-1build1) ... (Reading database ... 13723 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.4+20231209-1_riscv64.deb ... Unpacking libncursesw6:riscv64 (6.4+20231209-1) over (6.4+20230625-2) ... Preparing to unpack .../libtinfo6_6.4+20231209-1_riscv64.deb ... Unpacking libtinfo6:riscv64 (6.4+20231209-1) over (6.4+20230625-2) ... Setting up libtinfo6:riscv64 (6.4+20231209-1) ... (Reading database ... 13723 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-3ubuntu1_riscv64.deb ... Unpacking passwd (1:4.13+dfsg1-3ubuntu1) over (1:4.13+dfsg1-1ubuntu1) ... Setting up passwd (1:4.13+dfsg1-3ubuntu1) ... (Reading database ... 13723 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-2ubuntu1_riscv64.deb ... Unpacking libproc2-0:riscv64 (2:4.0.4-2ubuntu1) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../01-mawk_1.3.4.20231126-1_riscv64.deb ... Unpacking mawk (1.3.4.20231126-1) over (1.3.4.20230730-1) ... Preparing to unpack .../02-procps_2%3a4.0.4-2ubuntu1_riscv64.deb ... Unpacking procps (2:4.0.4-2ubuntu1) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../03-krb5-locales_1.20.1-5build1_all.deb ... Unpacking krb5-locales (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../04-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) over (8.2-1.3) ... Preparing to unpack .../05-libreadline8_8.2-3_riscv64.deb ... Unpacking libreadline8:riscv64 (8.2-3) over (8.2-1.3) ... Preparing to unpack .../06-libsqlite3-0_3.44.2-1_riscv64.deb ... Unpacking libsqlite3-0:riscv64 (3.44.2-1) over (3.42.0-1) ... Preparing to unpack .../07-openssl_3.0.10-1ubuntu3_riscv64.deb ... Unpacking openssl (3.0.10-1ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../08-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) over (1:2.11-7) ... Preparing to unpack .../09-bsdextrautils_2.39.2-6ubuntu1_riscv64.deb ... Unpacking bsdextrautils (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../10-libpng16-16_1.6.40-2_riscv64.deb ... Unpacking libpng16-16:riscv64 (1.6.40-2) over (1.6.40-1) ... Preparing to unpack .../11-xz-utils_5.4.5-0.1_riscv64.deb ... Unpacking xz-utils (5.4.5-0.1) over (5.4.1-0.2) ... Preparing to unpack .../12-g++_4%3a13.2.0-2ubuntu1_riscv64.deb ... Unpacking g++ (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../13-gcc_4%3a13.2.0-2ubuntu1_riscv64.deb ... Unpacking gcc (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../14-cpp_4%3a13.2.0-2ubuntu1_riscv64.deb ... Unpacking cpp (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../15-dpkg-dev_1.22.2ubuntu1_all.deb ... Unpacking dpkg-dev (1.22.2ubuntu1) over (1.22.0ubuntu1) ... Preparing to unpack .../16-libdpkg-perl_1.22.2ubuntu1_all.deb ... Unpacking libdpkg-perl (1.22.2ubuntu1) over (1.22.0ubuntu1) ... Preparing to unpack .../17-lto-disabled-list_44_all.deb ... Unpacking lto-disabled-list (44) over (43) ... Preparing to unpack .../18-libfakeroot_1.32.2-1_riscv64.deb ... Unpacking libfakeroot:riscv64 (1.32.2-1) over (1.32.1-1) ... Preparing to unpack .../19-fakeroot_1.32.2-1_riscv64.deb ... Unpacking fakeroot (1.32.2-1) over (1.32.1-1) ... Preparing to unpack .../20-optipng_0.7.7-3_riscv64.deb ... Unpacking optipng (0.7.7-3) over (0.7.7-2build1) ... Preparing to unpack .../21-pinentry-curses_1.2.1-3ubuntu1_riscv64.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu1) over (1.2.1-1ubuntu1) ... Setting up lto-disabled-list (44) ... Setting up apt-utils (2.7.7) ... Setting up bsdextrautils (2.39.2-6ubuntu1) ... Setting up cpp-13 (13.2.0-9ubuntu1) ... Setting up init (1.66ubuntu1) ... Setting up libtirpc-common (1.3.4+ds-1) ... Setting up libsqlite3-0:riscv64 (3.44.2-1) ... Setting up binutils-common:riscv64 (2.41.50.20231214-1ubuntu1) ... Setting up linux-libc-dev:riscv64 (6.6.0-14.14) ... Setting up libctf-nobfd0:riscv64 (2.41.50.20231214-1ubuntu1) ... Setting up krb5-locales (1.20.1-5build1) ... Setting up libgomp1:riscv64 (13.2.0-9ubuntu1) ... Setting up libsframe1:riscv64 (2.41.50.20231214-1ubuntu1) ... Setting up libfakeroot:riscv64 (1.32.2-1) ... Setting up libkrb5support0:riscv64 (1.20.1-5build1) ... Setting up fakeroot (1.32.2-1) ... Setting up perl-modules-5.36 (5.36.0-10ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.4.5-0.1) ... Setting up libproc2-0:riscv64 (2:4.0.4-2ubuntu1) ... Setting up libpng16-16:riscv64 (1.6.40-2) ... Setting up libatomic1:riscv64 (13.2.0-9ubuntu1) ... Setting up libncursesw6:riscv64 (6.4+20231209-1) ... Setting up libk5crypto3:riscv64 (1.20.1-5build1) ... Setting up uuid-runtime (2.39.2-6ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up cpp (4:13.2.0-2ubuntu1) ... Setting up libasan8:riscv64 (13.2.0-9ubuntu1) ... Setting up procps (2:4.0.4-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20231126-1) ... Setting up libkrb5-3:riscv64 (1.20.1-5build1) ... Setting up libbinutils:riscv64 (2.41.50.20231214-1ubuntu1) ... Setting up libc-dev-bin (2.38-3ubuntu1) ... Setting up openssl (3.0.10-1ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:riscv64 (13.2.0-9ubuntu1) ... Setting up libgdbm6:riscv64 (1.23-5) ... Setting up libctf0:riscv64 (2.41.50.20231214-1ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu1) ... Setting up libreadline8:riscv64 (8.2-3) ... Setting up binutils-riscv64-linux-gnu (2.41.50.20231214-1ubuntu1) ... Setting up binutils (2.41.50.20231214-1ubuntu1) ... Setting up optipng (0.7.7-3) ... Setting up libgssapi-krb5-2:riscv64 (1.20.1-5build1) ... Setting up libgdbm-compat4:riscv64 (1.23-5) ... Setting up libgcc-13-dev:riscv64 (13.2.0-9ubuntu1) ... Setting up libperl5.36:riscv64 (5.36.0-10ubuntu1) ... Setting up libtirpc3:riscv64 (1.3.4+ds-1) ... Setting up perl (5.36.0-10ubuntu1) ... Setting up libtirpc-dev:riscv64 (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.2ubuntu1) ... Setting up libnsl2:riscv64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.2ubuntu1) ... Setting up libnsl-dev:riscv64 (1.3.0-3) ... Setting up libc6-dev:riscv64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:riscv64 (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27579289 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-27579289 --arch=riscv64 --dist=noble-proposed --nolog progressivemauve_1.2.0+4713+dfsg-5build2.dsc Initiating build PACKAGEBUILD-27579289 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.19.0-1021-generic #23~22.04.1-Ubuntu SMP Thu Jun 22 12:49:35 UTC 2023 riscv64 sbuild (Debian sbuild) 0.81.2ubuntu6 (16 February 2022) on bos03-riscv64-020.buildd +====================================================================================+ | progressivemauve 1.2.0+4713+dfsg-5build2 (riscv64) Wed, 20 Dec 2023 10:55:21 +0000 | +====================================================================================+ Package: progressivemauve Version: 1.2.0+4713+dfsg-5build2 Source Version: 1.2.0+4713+dfsg-5build2 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27579289/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/progressivemauve-VuNkQZ/resolver-e0OP1t' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- progressivemauve_1.2.0+4713+dfsg-5build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/progressivemauve-VuNkQZ/progressivemauve-1.2.0+4713+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/progressivemauve-VuNkQZ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [513 B] Fetched 1899 B in 0s (4639 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgenome-dev libgenome0 libicu-dev libicu74 libmagic-mgc libmagic1 libmems-dev libmems1 libmuscle-dev libmuscle1 libpipeline1 libpkgconf3 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkgconf pkgconf-bin po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-graph1.83-dev libboost-graph-parallel1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi1.83-dev libboost-mpi-python1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.83-dev icu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgenome-dev libgenome0 libicu-dev libicu74 libmagic-mgc libmagic1 libmems-dev libmems1 libmuscle-dev libmuscle1 libpipeline1 libpkgconf3 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkgconf pkgconf-bin po-debconf sbuild-build-depends-main-dummy 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 60.4 MB of archives. After this operation, 428 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [742 B] Get:2 http://ftpmaster.internal/ubuntu noble/main riscv64 libelf1 riscv64 0.190-1 [61.0 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libicu74 riscv64 74.2-1ubuntu1 [10.9 MB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.3build3 [719 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 libmagic-mgc riscv64 1:5.45-2 [307 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main riscv64 libmagic1 riscv64 1:5.45-2 [93.6 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 file riscv64 1:5.45-2 [21.7 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main riscv64 gettext-base riscv64 0.21-14 [41.6 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 libuchardet0 riscv64 0.0.8-1 [77.4 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main riscv64 groff-base riscv64 1.23.0-3 [1017 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main riscv64 libpipeline1 riscv64 1.5.7-1 [26.8 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 man-db riscv64 2.12.0-1 [1214 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main riscv64 m4 riscv64 1.4.19-4 [261 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 autoconf all 2.71-3 [339 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 automake all 1:1.16.5-1.3 [558 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main riscv64 autopoint all 0.21-14 [422 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main riscv64 libdebhelper-perl all 13.11.8ubuntu1 [85.9 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main riscv64 libtool all 2.4.7-7 [166 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-override-perl all 0.10-1 [10.0 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libdw1 riscv64 0.190-1 [268 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 debugedit riscv64 1:5.0-5 [48.8 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 dwz riscv64 0.15-1 [115 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 gettext riscv64 0.21-14 [867 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main riscv64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 debhelper all 13.11.8ubuntu1 [940 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 icu-devtools riscv64 74.2-1ubuntu1 [225 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost1.83-dev riscv64 1.83.0-1ubuntu3 [10.7 MB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-atomic1.83.0 riscv64 1.83.0-1ubuntu3 [239 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-atomic1.83-dev riscv64 1.83.0-1ubuntu3 [242 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-dev riscv64 1.83.0.1ubuntu2 [4312 B] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-filesystem1.83.0 riscv64 1.83.0-1ubuntu3 [287 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-system1.83.0 riscv64 1.83.0-1ubuntu3 [236 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-system1.83-dev riscv64 1.83.0-1ubuntu3 [231 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-filesystem1.83-dev riscv64 1.83.0-1ubuntu3 [533 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-filesystem-dev riscv64 1.83.0.1ubuntu2 [4098 B] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-regex1.83.0 riscv64 1.83.0-1ubuntu3 [337 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libicu-dev riscv64 74.2-1ubuntu1 [17.2 MB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-regex1.83-dev riscv64 1.83.0-1ubuntu3 [738 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-iostreams1.83.0 riscv64 1.83.0-1ubuntu3 [259 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-iostreams1.83-dev riscv64 1.83.0-1ubuntu3 [355 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-iostreams-dev riscv64 1.83.0.1ubuntu2 [4050 B] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-program-options1.83.0 riscv64 1.83.0-1ubuntu3 [361 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-program-options1.83-dev riscv64 1.83.0-1ubuntu3 [1174 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-program-options-dev riscv64 1.83.0.1ubuntu2 [4086 B] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-system-dev riscv64 1.83.0.1ubuntu2 [4206 B] Get:52 http://ftpmaster.internal/ubuntu noble/universe riscv64 libgenome0 riscv64 1.3.11+svn20110227.4616-6 [123 kB] Get:53 http://ftpmaster.internal/ubuntu noble/universe riscv64 libgenome-dev riscv64 1.3.11+svn20110227.4616-6 [764 kB] Get:54 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmuscle1 riscv64 3.7+4565-7ubuntu1 [246 kB] Get:55 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmems1 riscv64 1.6.0+4725-9build2 [835 kB] Get:56 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmuscle-dev riscv64 3.7+4565-7ubuntu1 [679 kB] Get:57 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmems-dev riscv64 1.6.0+4725-9build2 [5433 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main riscv64 libpkgconf3 riscv64 1.8.1-2 [27.8 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 pkgconf-bin riscv64 1.8.1-2 [20.4 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 pkgconf riscv64 1.8.1-2 [16.7 kB] Preconfiguring packages ... Fetched 60.4 MB in 7s (8130 kB/s) Selecting previously unselected package libelf1:riscv64. (Reading database ... 13748 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.190-1_riscv64.deb ... Unpacking libelf1:riscv64 (0.190-1) ... Selecting previously unselected package libicu74:riscv64. Preparing to unpack .../01-libicu74_74.2-1ubuntu1_riscv64.deb ... Unpacking libicu74:riscv64 (74.2-1ubuntu1) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.3build3_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.14+dfsg-1.3build3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-2_riscv64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../04-libmagic1_1%3a5.45-2_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-2_riscv64.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14_riscv64.deb ... Unpacking gettext-base (0.21-14) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../07-libuchardet0_0.0.8-1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3_riscv64.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../09-libpipeline1_1.5.7-1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.0-1_riscv64.deb ... Unpacking man-db (2.12.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_riscv64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.8ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.11.8ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:riscv64. Preparing to unpack .../23-libdw1_0.190-1_riscv64.deb ... Unpacking libdw1:riscv64 (0.190-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../24-debugedit_1%3a5.0-5_riscv64.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_riscv64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14_riscv64.deb ... Unpacking gettext (0.21-14) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.8ubuntu1_all.deb ... Unpacking debhelper (13.11.8ubuntu1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../30-icu-devtools_74.2-1ubuntu1_riscv64.deb ... Unpacking icu-devtools (74.2-1ubuntu1) ... Selecting previously unselected package libboost1.83-dev:riscv64. Preparing to unpack .../31-libboost1.83-dev_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-atomic1.83.0:riscv64. Preparing to unpack .../32-libboost-atomic1.83.0_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-atomic1.83.0:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-atomic1.83-dev:riscv64. Preparing to unpack .../33-libboost-atomic1.83-dev_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-atomic1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-dev:riscv64. Preparing to unpack .../34-libboost-dev_1.83.0.1ubuntu2_riscv64.deb ... Unpacking libboost-dev:riscv64 (1.83.0.1ubuntu2) ... Selecting previously unselected package libboost-filesystem1.83.0:riscv64. Preparing to unpack .../35-libboost-filesystem1.83.0_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-filesystem1.83.0:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-system1.83.0:riscv64. Preparing to unpack .../36-libboost-system1.83.0_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-system1.83.0:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-system1.83-dev:riscv64. Preparing to unpack .../37-libboost-system1.83-dev_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-system1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-filesystem1.83-dev:riscv64. Preparing to unpack .../38-libboost-filesystem1.83-dev_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-filesystem1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-filesystem-dev:riscv64. Preparing to unpack .../39-libboost-filesystem-dev_1.83.0.1ubuntu2_riscv64.deb ... Unpacking libboost-filesystem-dev:riscv64 (1.83.0.1ubuntu2) ... Selecting previously unselected package libboost-regex1.83.0:riscv64. Preparing to unpack .../40-libboost-regex1.83.0_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-regex1.83.0:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libicu-dev:riscv64. Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_riscv64.deb ... Unpacking libicu-dev:riscv64 (74.2-1ubuntu1) ... Selecting previously unselected package libboost-regex1.83-dev:riscv64. Preparing to unpack .../42-libboost-regex1.83-dev_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-regex1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-iostreams1.83.0:riscv64. Preparing to unpack .../43-libboost-iostreams1.83.0_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-iostreams1.83.0:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-iostreams1.83-dev:riscv64. Preparing to unpack .../44-libboost-iostreams1.83-dev_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-iostreams1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-iostreams-dev:riscv64. Preparing to unpack .../45-libboost-iostreams-dev_1.83.0.1ubuntu2_riscv64.deb ... Unpacking libboost-iostreams-dev:riscv64 (1.83.0.1ubuntu2) ... Selecting previously unselected package libboost-program-options1.83.0:riscv64. Preparing to unpack .../46-libboost-program-options1.83.0_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-program-options1.83.0:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-program-options1.83-dev:riscv64. Preparing to unpack .../47-libboost-program-options1.83-dev_1.83.0-1ubuntu3_riscv64.deb ... Unpacking libboost-program-options1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-program-options-dev:riscv64. Preparing to unpack .../48-libboost-program-options-dev_1.83.0.1ubuntu2_riscv64.deb ... Unpacking libboost-program-options-dev:riscv64 (1.83.0.1ubuntu2) ... Selecting previously unselected package libboost-system-dev:riscv64. Preparing to unpack .../49-libboost-system-dev_1.83.0.1ubuntu2_riscv64.deb ... Unpacking libboost-system-dev:riscv64 (1.83.0.1ubuntu2) ... Selecting previously unselected package libgenome0:riscv64. Preparing to unpack .../50-libgenome0_1.3.11+svn20110227.4616-6_riscv64.deb ... Unpacking libgenome0:riscv64 (1.3.11+svn20110227.4616-6) ... Selecting previously unselected package libgenome-dev:riscv64. Preparing to unpack .../51-libgenome-dev_1.3.11+svn20110227.4616-6_riscv64.deb ... Unpacking libgenome-dev:riscv64 (1.3.11+svn20110227.4616-6) ... Selecting previously unselected package libmuscle1. Preparing to unpack .../52-libmuscle1_3.7+4565-7ubuntu1_riscv64.deb ... Unpacking libmuscle1 (3.7+4565-7ubuntu1) ... Selecting previously unselected package libmems1:riscv64. Preparing to unpack .../53-libmems1_1.6.0+4725-9build2_riscv64.deb ... Unpacking libmems1:riscv64 (1.6.0+4725-9build2) ... Selecting previously unselected package libmuscle-dev. Preparing to unpack .../54-libmuscle-dev_3.7+4565-7ubuntu1_riscv64.deb ... Unpacking libmuscle-dev (3.7+4565-7ubuntu1) ... Selecting previously unselected package libmems-dev. Preparing to unpack .../55-libmems-dev_1.6.0+4725-9build2_riscv64.deb ... Unpacking libmems-dev (1.6.0+4725-9build2) ... Selecting previously unselected package libpkgconf3:riscv64. Preparing to unpack .../56-libpkgconf3_1.8.1-2_riscv64.deb ... Unpacking libpkgconf3:riscv64 (1.8.1-2) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../57-pkgconf-bin_1.8.1-2_riscv64.deb ... Unpacking pkgconf-bin (1.8.1-2) ... Selecting previously unselected package pkgconf:riscv64. Preparing to unpack .../58-pkgconf_1.8.1-2_riscv64.deb ... Unpacking pkgconf:riscv64 (1.8.1-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../59-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:riscv64 (1.5.7-1) ... Setting up libboost-program-options1.83.0:riscv64 (1.83.0-1ubuntu3) ... Setting up libboost1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Setting up libgenome0:riscv64 (1.3.11+svn20110227.4616-6) ... Setting up libmuscle1 (3.7+4565-7ubuntu1) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libgenome-dev:riscv64 (1.3.11+svn20110227.4616-6) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:riscv64 (1.83.0-1ubuntu3) ... Setting up libdebhelper-perl (13.11.8ubuntu1) ... Setting up libboost-system1.83.0:riscv64 (1.83.0-1ubuntu3) ... Setting up libboost-program-options1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Setting up libmagic1:riscv64 (1:5.45-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up libboost-filesystem1.83.0:riscv64 (1.83.0-1ubuntu3) ... Setting up libboost-atomic1.83.0:riscv64 (1.83.0-1ubuntu3) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:riscv64 (1.8.1-2) ... Setting up libboost-program-options-dev:riscv64 (1.83.0.1ubuntu2) ... Setting up libboost-iostreams1.83.0:riscv64 (1.83.0-1ubuntu3) ... Setting up libmuscle-dev (3.7+4565-7ubuntu1) ... Setting up autopoint (0.21-14) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libboost-atomic1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Setting up autoconf (2.71-3) ... Setting up libicu74:riscv64 (74.2-1ubuntu1) ... Setting up libuchardet0:riscv64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libboost-dev:riscv64 (1.83.0.1ubuntu2) ... Setting up libboost-system1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Setting up libelf1:riscv64 (0.190-1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.3build3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:riscv64 (0.190-1) ... Setting up gettext (0.21-14) ... Setting up libtool (2.4.7-7) ... Setting up libboost-system-dev:riscv64 (1.83.0.1ubuntu2) ... Setting up libboost-filesystem1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Setting up libmems1:riscv64 (1.6.0+4725-9build2) ... Setting up pkgconf:riscv64 (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up icu-devtools (74.2-1ubuntu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libicu-dev:riscv64 (74.2-1ubuntu1) ... Setting up libboost-filesystem-dev:riscv64 (1.83.0.1ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libboost-regex1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Setting up libboost-iostreams1.83-dev:riscv64 (1.83.0-1ubuntu3) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libmems-dev (1.6.0+4725-9build2) ... Setting up libboost-iostreams-dev:riscv64 (1.83.0.1ubuntu2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.19.0-1021-generic #23~22.04.1-Ubuntu SMP Thu Jun 22 12:49:35 UTC 2023 riscv64 (riscv64) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 binutils-riscv64-linux-gnu_2.41.50.20231214-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2ubuntu1 dpkg-dev_1.22.2ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-9ubuntu1 gcc-13-base_13.2.0-9ubuntu1 gettext_0.21-14 gettext-base_0.21-14 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 icu-devtools_74.2-1ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5build1 libacl1_2.3.1-3 libapparmor1_4.0.0~alpha2-0ubuntu7 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-9ubuntu1 libassuan0_2.5.6-1 libatomic1_13.2.0-9ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231214-1ubuntu1 libblkid1_2.39.2-6ubuntu1 libboost-atomic1.83-dev_1.83.0-1ubuntu3 libboost-atomic1.83.0_1.83.0-1ubuntu3 libboost-dev_1.83.0.1ubuntu2 libboost-filesystem-dev_1.83.0.1ubuntu2 libboost-filesystem1.83-dev_1.83.0-1ubuntu3 libboost-filesystem1.83.0_1.83.0-1ubuntu3 libboost-iostreams-dev_1.83.0.1ubuntu2 libboost-iostreams1.83-dev_1.83.0-1ubuntu3 libboost-iostreams1.83.0_1.83.0-1ubuntu3 libboost-program-options-dev_1.83.0.1ubuntu2 libboost-program-options1.83-dev_1.83.0-1ubuntu3 libboost-program-options1.83.0_1.83.0-1ubuntu3 libboost-regex1.83-dev_1.83.0-1ubuntu3 libboost-regex1.83.0_1.83.0-1ubuntu3 libboost-system-dev_1.83.0.1ubuntu2 libboost-system1.83-dev_1.83.0-1ubuntu3 libboost-system1.83.0_1.83.0-1ubuntu3 libboost1.83-dev_1.83.0-1ubuntu3 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-9ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-5ubuntu1 libctf-nobfd0_2.41.50.20231214-1ubuntu1 libctf0_2.41.50.20231214-1ubuntu1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271ubuntu1 libdebhelper-perl_13.11.8ubuntu1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.2ubuntu1 libdw1_0.190-1 libelf1_0.190-1 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.2-1 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-9ubuntu1 libgcc-s1_13.2.0-9ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgenome-dev_1.3.11+svn20110227.4616-6 libgenome0_1.3.11+svn20110227.4616-6 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu6 libgomp1_13.2.0-9ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgssapi-krb5-2_1.20.1-5build1 libhogweed6_3.9.1-2 libicu-dev_74.2-1ubuntu1 libicu74_74.2-1ubuntu1 libidn2-0_2.3.4-1build1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libjansson4_2.14-2 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 libkmod2_30+20230601-2ubuntu1 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmems-dev_1.6.0+4725-9build2 libmems1_1.6.0+4725-9build2 libmount1_2.39.2-6ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmuscle-dev_3.7+4565-7ubuntu1 libmuscle1_3.7+4565-7ubuntu1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu6 libp11-kit0_0.25.3-2ubuntu2 libpam-modules_1.5.2-9.1ubuntu1 libpam-modules-bin_1.5.2-9.1ubuntu1 libpam-runtime_1.5.2-9.1ubuntu1 libpam0g_1.5.2-9.1ubuntu1 libpcre2-8-0_10.42-4ubuntu1 libperl5.36_5.36.0-10ubuntu1 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-2 libpng16-16_1.6.40-2 libproc2-0_2:4.0.4-2ubuntu1 libreadline8_8.2-3 libseccomp2_2.5.4-2ubuntu1 libselinux1_3.5-1build2 libsemanage-common_3.5-1build1 libsemanage2_3.5-1build1 libsepol2_3.5-2 libsframe1_2.41.50.20231214-1ubuntu1 libsmartcols1_2.39.2-6ubuntu1 libsqlite3-0_3.44.2-1 libss2_1.47.0-2ubuntu1 libssl3_3.0.10-1ubuntu3 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255-1ubuntu1 libsystemd0_255-1ubuntu1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libuchardet0_0.0.8-1 libudev1_255-1ubuntu1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6ubuntu1 libxml2_2.9.14+dfsg-1.3build3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-3ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_44 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.2-6ubuntu1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 pkgconf_1.8.1-2 pkgconf-bin_1.8.1-2 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.3ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: progressivemauve Binary: progressivemauve Architecture: any Version: 1.2.0+4713+dfsg-5build2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://darlinglab.org/mauve/user-guide/mauvealigner.html Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/progressivemauve Vcs-Git: https://salsa.debian.org/med-team/progressivemauve.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev Package-List: progressivemauve deb science optional arch=any Checksums-Sha1: 3b09d613f64fa9237d8c0566c02823136a253208 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz 29439dd41bd1c38b2e93a5deff9c3e8d014d03a2 18044 progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz Checksums-Sha256: e5f43b4e5af5d6ddb6d4bac91a919d0d2706ff42f51a4209d2d15be8a12c3772 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz f9d4a51effc5951e41ad2179b706e16c23058e6ad037bbf4ca3ac270157c4069 18044 progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz Files: b9f9a0377aeccaa353cc4a491452003a 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz c1d027ebaa14e24125be2aa688a068c3 18044 progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEVovyKmYzfL/Jprm3LIPbyOm9DjcFAmWB8+8ACgkQLIPbyOm9 DjfDUA//QbtQqC6+XaYp3vLuLWFJ7NNCk8APDN7goe/wTx+162/UpjKTW9XobD6D 0FStRWz1D8e7qdZX8l/ghEQ1dY5RuCLVpExunx+gbjJTkLX92apJaTo73KbWg4jQ vDYh3zRvyFVoMpkyNATKzlqYKkPf8QtarzU0MbQGrq9Zg/XZXBY8yuP6jbmgdvEp 9mA4omDOoEJVvB4vZzQS5x7AYh+zkckCZD0fpMRiHDxtguvS0Mn0fdZE9RVB/3VK Zsl6HaH+gNGGnup1/B72Ik2TPCoc+FrPxrSS2M5ewfd44ZPp/JCZXZa31ZD8mlYu vRAjDDrctUAXwKDy0w5bEZ8DJVCkGzaprTfjyrcpGmzmQEaaubg8BPCnUIYFS44I WuFNMd/nmHSEWxRINTxySuQ1NZc2zY6/Pgsk5dW6yVZXIicGePThhfMbdOI0Kj1x I0zf0m1dOyTqhWmQ02FjR6h7YnaH3uBeWvovEnWMtv+kxopMpFTwLC8TSM2jH4H/ RkLJCxEqF64r6fC21lJEJKe3ZfAl/cdJ6kJc1H3l2nIBeChGwGLmMBCF+AOY4SF4 tRT+s0aw2pDYKbhPF6L5kx+LUAsJJyzP5XplSkb5n9LRrq858Pm+VnK1CbYLSQ49 a5+2paiLswNipbDfFBxx9jGxUUaIMnyN1nzMDq2p85+6AOQo0ng= =cbP9 -----END PGP SIGNATURE----- gpgv: Signature made Tue Dec 19 19:50:07 2023 UTC gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./progressivemauve_1.2.0+4713+dfsg-5build2.dsc: no acceptable signature found dpkg-source: info: extracting progressivemauve in /<> dpkg-source: info: unpacking progressivemauve_1.2.0+4713+dfsg.orig.tar.xz dpkg-source: info: unpacking progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_build.patch dpkg-source: info: applying do_not_build_static_binaries.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying use-native-getopt.patch dpkg-source: info: applying adapt-to-unversioned-libs.patch dpkg-source: info: applying fix_FTBFS_boost1.67.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27579289 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27579289 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27579289 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package progressivemauve dpkg-buildpackage: info: source version 1.2.0+4713+dfsg-5build2 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:12: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:12: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:745: AM_CONFIG_HEADER is expanded from... configure.ac:12: the top level configure.ac:27: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:27: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:27: the top level configure.ac:71: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:71: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:71: the top level configure.ac:91: warning: AC_OUTPUT should be used without arguments. configure.ac:91: You should run autoupdate. configure.ac:21: installing 'config/compile' configure.ac:9: installing 'config/config.guess' configure.ac:9: installing 'config/config.sub' configure.ac:11: installing 'config/install-sh' configure.ac:11: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am:12: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/Makefile.am: installing 'config/depcomp' src/Makefile.am:51: warning: variable 'EXTRA_mauveStatic_SOURCES' is defined but no program or src/Makefile.am:51: library has 'mauveStatic' as canonical name (possible typo) src/Makefile.am:49: warning: variable 'mauveStatic_SOURCES' is defined but no program or src/Makefile.am:49: library has 'mauveStatic' as canonical name (possible typo) src/Makefile.am:160: warning: variable 'progressiveMauveStatic_SOURCES' is defined but no program or src/Makefile.am:160: library has 'progressiveMauveStatic' as canonical name (possible typo) src/Makefile.am:50: warning: variable 'mauveStatic_LDADD' is defined but no program or src/Makefile.am:50: library has 'mauveStatic' as canonical name (possible typo) src/Makefile.am:161: warning: variable 'progressiveMauveStatic_LDADD' is defined but no program or src/Makefile.am:161: library has 'progressiveMauveStatic' as canonical name (possible typo) src/Makefile.am:52: warning: variable 'mauveStatic_DEPENDENCIES' is defined but no program or src/Makefile.am:52: library has 'mauveStatic' as canonical name (possible typo) dh_auto_configure -a ./configure --build=riscv64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking target system type... riscv64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether ln -s works... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for getopt_long... yes checking for getopt... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for DEPS... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for memset... yes checking for libintl.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for wchar.h... yes checking for GNU libc compatible malloc... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for size_t... yes checking how to run the C preprocessor... gcc -E checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/config.h config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-am make[3]: Entering directory '/<>/src' g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o mauveAligner.o mauveAligner.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o scoreAlignment.o scoreAlignment.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o uniqueMerCount.o uniqueMerCount.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o toRawSequence.o toRawSequence.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o mfa2xmfa.o mfa2xmfa.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from mauveAligner.cpp:30: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ mauveAligner.cpp:413:62: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 413 | cerr << "mauveAligner " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ mauveAligner.cpp:413:84: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 413 | cerr << "mauveAligner " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o addUnalignedIntervals.o addUnalignedIntervals.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o toMultiFastA.o toMultiFastA.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from addUnalignedIntervals.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from toMultiFastA.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o getAlignmentWindows.o getAlignmentWindows.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from getAlignmentWindows.cpp:14: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o uniquifyTrees.o uniquifyTrees.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o toGrimmFormat.o toGrimmFormat.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o mauveToXMFA.o mauveToXMFA.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o stripGapColumns.o stripGapColumns.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o progressiveMauve.o progressiveMauve.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o UniqueMatchFinder.o UniqueMatchFinder.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o extractBCITrees.o extractBCITrees.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from progressiveMauve.cpp:26: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ progressiveMauve.cpp:417:66: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 417 | cerr << "progressiveMauve " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ progressiveMauve.cpp:417:88: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 417 | cerr << "progressiveMauve " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o createBackboneMFA.o createBackboneMFA.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o repeatoire.o repeatoire.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from createBackboneMFA.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from repeatoire.cpp:4: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o alignmentProjector.o alignmentProjector.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/ProgressiveAligner.h:21, from alignmentProjector.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o stripSubsetLCBs.o stripSubsetLCBs.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o projectAndStrip.o projectAndStrip.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from projectAndStrip.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o makeBadgerMatrix.o makeBadgerMatrix.cpp projectAndStrip.cpp: In function ‘int main(int, char**)’: projectAndStrip.cpp:65:81: warning: conversion from ‘long unsigned int’ to ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 65 | not_ids[seq_ids[i]] = (std::numeric_limits::max)(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o randomGeneSample.o randomGeneSample.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from randomGeneSample.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o getOrthologList.o getOrthologList.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o bbFilter.o bbFilter.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from getOrthologList.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/Backbone.h:24, from bbFilter.cpp:1: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o bbAnalyze.o bbAnalyze.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/Backbone.h:24, from bbAnalyze.cpp:4: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o backbone_global_to_local.o backbone_global_to_local.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/Backbone.h:24, from backbone_global_to_local.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o xmfa2maf.o xmfa2maf.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/ProgressiveAligner.h:21, from xmfa2maf.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o coordinateTranslate.o coordinateTranslate.cpp g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mauveAligner mauveAligner.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o scoreAlignment scoreAlignment.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o uniqueMerCount uniqueMerCount.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o toRawSequence toRawSequence.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mfa2xmfa mfa2xmfa.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o addUnalignedIntervals addUnalignedIntervals.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o toMultiFastA toMultiFastA.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o getAlignmentWindows getAlignmentWindows.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o uniquifyTrees uniquifyTrees.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o toGrimmFormat toGrimmFormat.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mauveToXMFA mauveToXMFA.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o stripGapColumns stripGapColumns.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o progressiveMauve progressiveMauve.o UniqueMatchFinder.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o extractBCITrees extractBCITrees.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o createBackboneMFA createBackboneMFA.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o alignmentProjector alignmentProjector.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o repeatoire repeatoire.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o stripSubsetLCBs stripSubsetLCBs.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o projectAndStrip projectAndStrip.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o makeBadgerMatrix makeBadgerMatrix.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o randomGeneSample randomGeneSample.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o getOrthologList getOrthologList.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bbFilter bbFilter.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o backbone_global_to_local backbone_global_to_local.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o xmfa2maf xmfa2maf.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o coordinateTranslate coordinateTranslate.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bbAnalyze bbAnalyze.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/progressivemauve/ -a make -j4 install DESTDIR=/<>/progressivemauve-1.2.0\+4713\+dfsg/debian/progressivemauve AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/<>/debian/progressivemauve/usr/bin' /usr/bin/install -c mauveAligner scoreAlignment uniqueMerCount toRawSequence mfa2xmfa addUnalignedIntervals toMultiFastA getAlignmentWindows uniquifyTrees toGrimmFormat mauveToXMFA stripGapColumns progressiveMauve extractBCITrees createBackboneMFA repeatoire alignmentProjector stripSubsetLCBs projectAndStrip makeBadgerMatrix randomGeneSample getOrthologList bbFilter bbAnalyze backbone_global_to_local xmfa2maf coordinateTranslate '/<>/debian/progressivemauve/usr/bin' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/progressivemauve/usr/bin/stripSubsetLCBs: Unknown DWARF DW_FORM_0x1f21 b3e41a7ff0644752d6df3db9c7564f7defa156d4 debugedit: debian/progressivemauve/usr/bin/xmfa2maf: Unknown DWARF DW_FORM_0x1f21 076500d4df5093fed0c61d0ecd64bc10e7e16715 debugedit: debian/progressivemauve/usr/bin/toGrimmFormat: Unknown DWARF DW_FORM_0x1f21 a9f6db50a1e4af8712d451c794f498386296c96b debugedit: debian/progressivemauve/usr/bin/projectAndStrip: Unknown DWARF DW_FORM_0x1f21 bd3ce683cfe2516d7e73d3a41a404189927d42f6 debugedit: debian/progressivemauve/usr/bin/mfa2xmfa: Unknown DWARF DW_FORM_0x1f20 dd4b6054ba91b7e7cb1d8bbf6429a928576fc87c debugedit: debian/progressivemauve/usr/bin/makeBadgerMatrix: Unknown DWARF DW_FORM_0x1f21 33ffaf6f84a507127da7bc848906b15edff3b4d0 debugedit: debian/progressivemauve/usr/bin/uniquifyTrees: Unknown DWARF DW_FORM_0x1f20 f1cb3cfe6a8e6336e89b5a5ec7db604140b8b5c7 debugedit: debian/progressivemauve/usr/bin/backbone_global_to_local: Unknown DWARF DW_FORM_0x1f21 77c597cc3ffdba1a0b9c1d0979b24e303ade78be debugedit: debian/progressivemauve/usr/bin/toMultiFastA: Unknown DWARF DW_FORM_0x1f21 a00e9f19636670c196bb355a39d3e6a2c45b0483 debugedit: debian/progressivemauve/usr/bin/mauveToXMFA: Unknown DWARF DW_FORM_0x1f21 63aeb512ba13db862001a3041e57c94c34ed4a8a debugedit: debian/progressivemauve/usr/bin/stripGapColumns: Unknown DWARF DW_FORM_0x1f21 643bfb25bdb8ab31fe4106326f5d357272f25591 debugedit: debian/progressivemauve/usr/bin/alignmentProjector: Unknown DWARF DW_FORM_0x1f21 69c0a4e47f60645231ee4e67ddb2979fc04eb293 debugedit: debian/progressivemauve/usr/bin/extractBCITrees: Unknown DWARF DW_FORM_0x1f21 7a6adeef6efc8ddc04a7263184fb7cc350928dd6 debugedit: debian/progressivemauve/usr/bin/repeatoire: Unknown DWARF DW_FORM_0x1f21 fa1e05e0d0f550aec45b9c8e08629731733360d2 debugedit: debian/progressivemauve/usr/bin/getOrthologList: Unknown DWARF DW_FORM_0x1f21 fcac7415c860102ed8a0b2701dfec6af8acd2cae debugedit: debian/progressivemauve/usr/bin/uniqueMerCount: Unknown DWARF DW_FORM_0x1f20 00448043a3b196159799093751571568bf3bc494 debugedit: debian/progressivemauve/usr/bin/toRawSequence: Unknown DWARF DW_FORM_0x1f20 18d7e6195f92c34cbe40399cc320ab4019bfc716 debugedit: debian/progressivemauve/usr/bin/mauveAligner: Unknown DWARF DW_FORM_0x1f21 c41792aba0c2e873b4f444d52c02a51a98cceaf2 debugedit: debian/progressivemauve/usr/bin/scoreAlignment: Unknown DWARF DW_FORM_0x1f21 aa91c260aa7b9501ec6f811a8533fa71118d36b2 debugedit: debian/progressivemauve/usr/bin/createBackboneMFA: Unknown DWARF DW_FORM_0x1f21 97a74f52e390d2f4d0ec27c5cb2adab17fb1dd72 debugedit: debian/progressivemauve/usr/bin/addUnalignedIntervals: Unknown DWARF DW_FORM_0x1f21 c43f7f7c2c3b79ce138a16a6e9576366090f9e48 debugedit: debian/progressivemauve/usr/bin/getAlignmentWindows: Unknown DWARF DW_FORM_0x1f21 d0c0a88233b0eb7dc993b8e26a75fd09df279b58 debugedit: debian/progressivemauve/usr/bin/progressiveMauve: Unknown DWARF DW_FORM_0x1f20 ac49ed356695429a869c9f9e23683b3feeb5bb92 debugedit: debian/progressivemauve/usr/bin/coordinateTranslate: Unknown DWARF DW_FORM_0x1f21 1d35f3464a8c7005289aa2df41fc2a8074ffa9ef debugedit: debian/progressivemauve/usr/bin/bbAnalyze: Unknown DWARF DW_FORM_0x1f21 6d5080ed8ea3886fa0344e85500300449e7c4b3f debugedit: debian/progressivemauve/usr/bin/bbFilter: Unknown DWARF DW_FORM_0x1f21 0bcea628b00a64767dd0c97138bddfacd49b698c debugedit: debian/progressivemauve/usr/bin/randomGeneSample: Unknown DWARF DW_FORM_0x1f21 9d4829d7512918aaa15abf468c0ff4ac28ae6546 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing progressivemauve (in debian/progressivemauve); do_strip: , oemstrip: pkgstriptranslations: processing progressivemauve-dbgsym (in debian/.debhelper/progressivemauve/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/progressivemauve/dbgsym-root/DEBIAN/control, package progressivemauve-dbgsym, directory debian/.debhelper/progressivemauve/dbgsym-root dpkg-deb: building package 'progressivemauve-dbgsym' in 'debian/.debhelper/scratch-space/build-progressivemauve/progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.deb'. Renaming progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.deb to progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/progressivemauve/DEBIAN/control, package progressivemauve, directory debian/progressivemauve pkgstripfiles: Running PNG optimization (using 4 cpus) for package progressivemauve ... pkgstripfiles: No PNG files. dpkg-deb: building package 'progressivemauve' in '../progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb'. dpkg-genbuildinfo --build=any -O../progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-20T11:16:01Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.changes: --------------------------------------------------------- Format: 1.8 Date: Tue, 19 Dec 2023 20:44:40 +0100 Source: progressivemauve Binary: progressivemauve Built-For-Profiles: noudeb Architecture: riscv64 Version: 1.2.0+4713+dfsg-5build2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: progressivemauve - multiple genome alignment algorithms Changes: progressivemauve (1.2.0+4713+dfsg-5build2) noble; urgency=medium . * No-change rebuild for boost defaults change. Checksums-Sha1: 4cde8efbaca84e8a7234b483c45932ea962abfd0 10826058 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.ddeb 569fd8d705df95c19169a791ce9de0f98013c77e 6902 progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.buildinfo d4b5e2b3d4de62819650885e4ae2f1c1271c75fb 1397914 progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb Checksums-Sha256: 6a577b33793879a46b713aba94eb1816bf85bc522a5c14e7bc1e3b4e0e3e2b93 10826058 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.ddeb 56886ad2e3ef799cdb985c64aa7e2bb68430da990629f45b08fc6ccc7effd9a1 6902 progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.buildinfo b52c749a2a1391a826bdb13f6117b66e488eccf49ec20c5e5a3ba7df46e082a1 1397914 progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb Files: 1d7fd0ec612d54d68821b63d5e6262bc 10826058 debug optional progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.ddeb dbebd314100a578493a0f397eecd30d1 6902 science optional progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.buildinfo 9650e8bc7a12f5c5f823ce23842bd3f3 1397914 science optional progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb /<>/progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.changes.new could not be renamed to /<>/progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: progressivemauve Binary: progressivemauve progressivemauve-dbgsym Architecture: riscv64 Version: 1.2.0+4713+dfsg-5build2 Checksums-Md5: 1d7fd0ec612d54d68821b63d5e6262bc 10826058 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.ddeb 9650e8bc7a12f5c5f823ce23842bd3f3 1397914 progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb Checksums-Sha1: 4cde8efbaca84e8a7234b483c45932ea962abfd0 10826058 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.ddeb d4b5e2b3d4de62819650885e4ae2f1c1271c75fb 1397914 progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb Checksums-Sha256: 6a577b33793879a46b713aba94eb1816bf85bc522a5c14e7bc1e3b4e0e3e2b93 10826058 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_riscv64.ddeb b52c749a2a1391a826bdb13f6117b66e488eccf49ec20c5e5a3ba7df46e082a1 1397914 progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Wed, 20 Dec 2023 11:15:56 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), binutils-riscv64-linux-gnu (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2ubuntu1), dpkg-dev (= 1.22.2ubuntu1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231214-1ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libboost-atomic1.83-dev (= 1.83.0-1ubuntu3), libboost-atomic1.83.0 (= 1.83.0-1ubuntu3), libboost-dev (= 1.83.0.1ubuntu2), libboost-filesystem-dev (= 1.83.0.1ubuntu2), libboost-filesystem1.83-dev (= 1.83.0-1ubuntu3), libboost-filesystem1.83.0 (= 1.83.0-1ubuntu3), libboost-iostreams-dev (= 1.83.0.1ubuntu2), libboost-iostreams1.83-dev (= 1.83.0-1ubuntu3), libboost-iostreams1.83.0 (= 1.83.0-1ubuntu3), libboost-program-options-dev (= 1.83.0.1ubuntu2), libboost-program-options1.83-dev (= 1.83.0-1ubuntu3), libboost-program-options1.83.0 (= 1.83.0-1ubuntu3), libboost-regex1.83-dev (= 1.83.0-1ubuntu3), libboost-regex1.83.0 (= 1.83.0-1ubuntu3), libboost-system-dev (= 1.83.0.1ubuntu2), libboost-system1.83-dev (= 1.83.0-1ubuntu3), libboost-system1.83.0 (= 1.83.0-1ubuntu3), libboost1.83-dev (= 1.83.0-1ubuntu3), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdpkg-perl (= 1.22.2ubuntu1), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgenome-dev (= 1.3.11+svn20110227.4616-6), libgenome0 (= 1.3.11+svn20110227.4616-6), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgssapi-krb5-2 (= 1.20.1-5build1), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmems-dev (= 1.6.0+4725-9build2), libmems1 (= 1.6.0+4725-9build2), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmuscle-dev (= 3.7+4565-7ubuntu1), libmuscle1 (= 3.7+4565-7ubuntu1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-2), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255-1ubuntu1), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libxml2 (= 2.9.14+dfsg-1.3build3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.3ubuntu1), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1703015080" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ progressivemauve_1.2.0+4713+dfsg-5build2_riscv64.deb ---------------------------------------------------- new Debian package, version 2.0. size 1397914 bytes: control archive=2555 bytes. 2049 bytes, 37 lines control 2744 bytes, 42 lines md5sums Package: progressivemauve Version: 1.2.0+4713+dfsg-5build2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4898 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), libgenome0 (>= 1.3.11+svn20110227.4616), libmems1 (>= 1.6.0+4725), libstdc++6 (>= 13.1) Enhances: mauve-aligner Section: science Priority: optional Homepage: https://darlinglab.org/mauve/user-guide/mauvealigner.html Description: multiple genome alignment algorithms The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface. . Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. . Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. . Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. . Mauve is developed at the University of Wisconsin. drwxr-xr-x root/root 0 2023-12-19 19:44 ./ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/bin/ -rwxr-xr-x root/root 170352 2023-12-19 19:44 ./usr/bin/addUnalignedIntervals -rwxr-xr-x root/root 231800 2023-12-19 19:44 ./usr/bin/alignmentProjector -rwxr-xr-x root/root 170352 2023-12-19 19:44 ./usr/bin/backbone_global_to_local -rwxr-xr-x root/root 346496 2023-12-19 19:44 ./usr/bin/bbAnalyze -rwxr-xr-x root/root 117088 2023-12-19 19:44 ./usr/bin/bbFilter -rwxr-xr-x root/root 166256 2023-12-19 19:44 ./usr/bin/coordinateTranslate -rwxr-xr-x root/root 162160 2023-12-19 19:44 ./usr/bin/createBackboneMFA -rwxr-xr-x root/root 92440 2023-12-19 19:44 ./usr/bin/extractBCITrees -rwxr-xr-x root/root 190832 2023-12-19 19:44 ./usr/bin/getAlignmentWindows -rwxr-xr-x root/root 244080 2023-12-19 19:44 ./usr/bin/getOrthologList -rwxr-xr-x root/root 170360 2023-12-19 19:44 ./usr/bin/makeBadgerMatrix -rwxr-xr-x root/root 241648 2023-12-19 19:44 ./usr/bin/mauveAligner -rwxr-xr-x root/root 166256 2023-12-19 19:44 ./usr/bin/mauveToXMFA -rwxr-xr-x root/root 22888 2023-12-19 19:44 ./usr/bin/mfa2xmfa -rwxr-xr-x root/root 331752 2023-12-19 19:44 ./usr/bin/progressiveMauve -rwxr-xr-x root/root 199032 2023-12-19 19:44 ./usr/bin/projectAndStrip -rwxr-xr-x root/root 215408 2023-12-19 19:44 ./usr/bin/randomGeneSample -rwxr-xr-x root/root 552992 2023-12-19 19:44 ./usr/bin/repeatoire -rwxr-xr-x root/root 182640 2023-12-19 19:44 ./usr/bin/scoreAlignment -rwxr-xr-x root/root 174448 2023-12-19 19:44 ./usr/bin/stripGapColumns -rwxr-xr-x root/root 182648 2023-12-19 19:44 ./usr/bin/stripSubsetLCBs -rwxr-xr-x root/root 166248 2023-12-19 19:44 ./usr/bin/toGrimmFormat -rwxr-xr-x root/root 166256 2023-12-19 19:44 ./usr/bin/toMultiFastA -rwxr-xr-x root/root 18792 2023-12-19 19:44 ./usr/bin/toRawSequence -rwxr-xr-x root/root 18792 2023-12-19 19:44 ./usr/bin/uniqueMerCount -rwxr-xr-x root/root 63768 2023-12-19 19:44 ./usr/bin/uniquifyTrees -rwxr-xr-x root/root 174448 2023-12-19 19:44 ./usr/bin/xmfa2maf drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/doc/progressivemauve/ -rw-r--r-- root/root 261 2020-11-30 16:33 ./usr/share/doc/progressivemauve/README.test -rw-r--r-- root/root 588 2023-12-19 19:44 ./usr/share/doc/progressivemauve/changelog.Debian.gz -rw-r--r-- root/root 776 2020-11-30 16:33 ./usr/share/doc/progressivemauve/copyright -rw-r--r-- root/root 1280 2020-11-30 16:33 ./usr/share/doc/progressivemauve/run-unit-test drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/doc/progressivemauve/test_data/ -rw-r--r-- root/root 2203 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/all_virii.fasta.gz -rw-r--r-- root/root 2848 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/genome_1.gbk.gz -rw-r--r-- root/root 2879 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/genome_2.gbk.gz -rw-r--r-- root/root 2878 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/genome_3.gbk.gz drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/man/man1/ -rw-r--r-- root/root 1122 2023-12-19 19:44 ./usr/share/man/man1/addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/alignmentProjector.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/backbone_global_to_local.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/bbAnalyze.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 515 2023-12-19 19:44 ./usr/share/man/man1/bbFilter.1.gz -rw-r--r-- root/root 373 2023-12-19 19:44 ./usr/share/man/man1/coordinateTranslate.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/createBackboneMFA.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 525 2023-12-19 19:44 ./usr/share/man/man1/extractBCITrees.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/getAlignmentWindows.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/getOrthologList.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/makeBadgerMatrix.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 1516 2023-12-19 19:44 ./usr/share/man/man1/mauveAligner.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/mauveToXMFA.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/mfa2xmfa.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 1987 2023-12-19 19:44 ./usr/share/man/man1/progressiveMauve.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/projectAndStrip.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/randomGeneSample.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 919 2023-12-19 19:44 ./usr/share/man/man1/repeatoire.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/scoreAlignment.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/stripGapColumns.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/stripSubsetLCBs.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/toGrimmFormat.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/toMultiFastA.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/toRawSequence.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/uniqueMerCount.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/uniquifyTrees.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/xmfa2maf.1.gz -> addUnalignedIntervals.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 349212 Build-Time: 1056 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 162 Job: progressivemauve_1.2.0+4713+dfsg-5build2.dsc Machine Architecture: riscv64 Package: progressivemauve Package-Time: 1240 Source-Version: 1.2.0+4713+dfsg-5build2 Space: 349212 Status: successful Version: 1.2.0+4713+dfsg-5build2 -------------------------------------------------------------------------------- Finished at 2023-12-20T11:16:01Z Build needed 00:20:40, 349212k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27579289 Scanning for processes to kill in build PACKAGEBUILD-27579289