https://launchpad.net/ubuntu/+source/progressivemauve/1.2.0+4713+dfsg-5build2/+build/27579290 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-002 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:16 UTC 2023 s390x Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 20 Dec 18:12:56 ntpdate[1910]: adjust time server 10.211.37.1 offset -0.005740 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27579290 --image-type chroot /home/buildd/filecache-default/c23f799bb684944311373fdcead5a58221fa6ef7 Creating target for build PACKAGEBUILD-27579290 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27579290 Starting target for build PACKAGEBUILD-27579290 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27579290 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27579290 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27579290 Updating target for build PACKAGEBUILD-27579290 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main s390x Packages [1337 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe s390x Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6040 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [96.9 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [43.1 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [297 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [162 kB] Fetched 23.2 MB in 4s (5718 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-s390x-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 130 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 95.5 MB of archives. After this operation, 7373 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.38-3ubuntu1 [1626 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.38-3ubuntu1 [20.0 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtirpc-common all 1.3.4+ds-1build1 [8566 B] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libgssapi-krb5-2 s390x 1.20.1-5build1 [146 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libkrb5-3 s390x 1.20.1-5build1 [354 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libk5crypto3 s390x 1.20.1-5build1 [89.1 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libkrb5support0 s390x 1.20.1-5build1 [34.1 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libssl3 s390x 3.0.10-1ubuntu3 [1625 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtirpc3 s390x 1.3.4+ds-1build1 [100 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libnsl2 s390x 1.3.0-3 [44.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main s390x linux-libc-dev s390x 6.6.0-14.14 [1576 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 13.2.0-9ubuntu1 [50.1 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libctf0 s390x 2.41.50.20231214-1ubuntu1 [84.0 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libctf-nobfd0 s390x 2.41.50.20231214-1ubuntu1 [88.1 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main s390x binutils-s390x-linux-gnu s390x 2.41.50.20231214-1ubuntu1 [2387 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libbinutils s390x 2.41.50.20231214-1ubuntu1 [421 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main s390x binutils-common s390x 2.41.50.20231214-1ubuntu1 [230 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main s390x binutils s390x 2.41.50.20231214-1ubuntu1 [3062 B] Get:21 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-base s390x 13.2.0-9ubuntu1 [45.2 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-s1 s390x 13.2.0-9ubuntu1 [35.9 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 13.2.0-9ubuntu1 [146 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 13.2.0-9ubuntu1 [31.3 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 13.2.0-9ubuntu1 [9382 B] Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 13.2.0-9ubuntu1 [2852 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 13.2.0-9ubuntu1 [1112 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-9ubuntu1 [10.2 MB] Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-9ubuntu1 [2426 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-9ubuntu1 [1003 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-9ubuntu1 [17.6 MB] Get:32 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-9ubuntu1 [8794 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++6 s390x 13.2.0-9ubuntu1 [875 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main s390x zlib1g s390x 1:1.3.dfsg-3ubuntu1 [75.3 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libsframe1 s390x 2.41.50.20231214-1ubuntu1 [13.1 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libzstd1 s390x 1.5.5+dfsg2-2 [336 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.38-3ubuntu1 [2839 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main s390x base-files s390x 13ubuntu5 [73.6 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.14 [89.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main s390x bash s390x 5.2.21-2ubuntu1 [855 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main s390x bsdutils s390x 1:2.39.2-6ubuntu1 [95.2 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main s390x coreutils s390x 9.4-2ubuntu1 [1501 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main s390x diffutils s390x 1:3.10-1 [187 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main s390x liblzma5 s390x 5.4.5-0.1 [133 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libapparmor1 s390x 4.0.0~alpha2-0ubuntu7 [49.6 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libaudit-common all 1:3.1.2-1 [5512 B] Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libcap-ng0 s390x 0.8.3-3 [15.7 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libaudit1 s390x 1:3.1.2-1 [48.7 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libblkid1 s390x 2.39.2-6ubuntu1 [126 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libkmod2 s390x 30+20230601-2ubuntu1 [54.5 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-8-0 s390x 10.42-4ubuntu1 [243 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libselinux1 s390x 3.5-1build2 [83.5 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libmount1 s390x 2.39.2-6ubuntu1 [137 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libpam0g s390x 1.5.2-9.1ubuntu1 [66.0 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libseccomp2 s390x 2.5.4-2ubuntu1 [52.2 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-sysv s390x 255-1ubuntu1 [11.7 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-dev all 255-1ubuntu1 [98.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd s390x 255-1ubuntu1 [3581 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd-shared s390x 255-1ubuntu1 [2129 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libargon2-1 s390x 0~20190702+dfsg-4 [53.1 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libuuid1 s390x 2.39.2-6ubuntu1 [34.4 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libcryptsetup12 s390x 2:2.6.1-5ubuntu1 [239 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libfdisk1 s390x 2.39.2-6ubuntu1 [149 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main s390x mount s390x 2.39.2-6ubuntu1 [118 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd0 s390x 255-1ubuntu1 [440 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libudev1 s390x 255-1ubuntu1 [174 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libxxhash0 s390x 0.8.2-2 [23.6 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libapt-pkg6.0 s390x 2.7.7 [962 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main s390x tar s390x 1.34+dfsg-1.4 [357 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dpkg s390x 1.22.2ubuntu1 [1309 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main s390x grep s390x 3.11-3 [172 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main s390x login s390x 1:4.13+dfsg1-3ubuntu1 [202 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main s390x ncurses-bin s390x 6.4+20231209-1 [196 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libperl5.36 s390x 5.36.0-10ubuntu1 [4899 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main s390x perl s390x 5.36.0-10ubuntu1 [235 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main s390x perl-base s390x 5.36.0-10ubuntu1 [1881 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main s390x perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libdb5.3 s390x 5.3.28+dfsg2-4 [752 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libgdbm6 s390x 1.23-5 [35.5 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libgdbm-compat4 s390x 1.23-5 [6538 B] Get:81 http://ftpmaster.internal/ubuntu noble/main s390x util-linux s390x 2.39.2-6ubuntu1 [1137 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libdebconfclient0 s390x 0.271ubuntu1 [11.3 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main s390x base-passwd s390x 3.6.3 [51.1 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main s390x init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.38-3ubuntu1 [659 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main s390x ncurses-base all 6.4+20231209-1 [25.2 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main s390x sysvinit-utils s390x 3.08-3ubuntu1 [34.3 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt s390x 2.7.7 [1377 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt-utils s390x 2.7.7 [213 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libunistring5 s390x 1.1-2 [544 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libidn2-0 s390x 2.3.4-1build1 [65.1 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libffi8 s390x 3.4.4-2 [22.6 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libp11-kit0 s390x 0.25.3-2ubuntu2 [313 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libgnutls30 s390x 3.8.1-4ubuntu6 [937 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libpam-modules-bin s390x 1.5.2-9.1ubuntu1 [51.9 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libpam-modules s390x 1.5.2-9.1ubuntu1 [291 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main s390x init s390x 1.66ubuntu1 [6188 B] Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libsmartcols1 s390x 2.39.2-6ubuntu1 [66.3 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main s390x uuid-runtime s390x 2.39.2-6ubuntu1 [33.2 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libgpg-error-l10n all 1.47-3build1 [8024 B] Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libgpg-error0 s390x 1.47-3build1 [75.6 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libsemanage-common all 3.5-1build1 [9982 B] Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libsepol2 s390x 3.5-2 [308 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libsemanage2 s390x 3.5-1build1 [95.1 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libncursesw6 s390x 6.4+20231209-1 [158 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libtinfo6 s390x 6.4+20231209-1 [115 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main s390x passwd s390x 1:4.13+dfsg1-3ubuntu1 [855 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libproc2-0 s390x 2:4.0.4-2ubuntu1 [58.6 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main s390x mawk s390x 1.3.4.20231126-1 [132 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main s390x procps s390x 2:4.0.4-2ubuntu1 [722 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main s390x krb5-locales all 1.20.1-5build1 [13.7 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main s390x readline-common all 8.2-3 [56.2 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libreadline8 s390x 8.2-3 [167 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libsqlite3-0 s390x 3.44.2-1 [727 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main s390x openssl s390x 3.0.10-1ubuntu3 [1189 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main s390x bash-completion all 1:2.11-8 [180 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main s390x bsdextrautils s390x 2.39.2-6ubuntu1 [75.7 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libpng16-16 s390x 1.6.40-2 [197 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main s390x xz-utils s390x 5.4.5-0.1 [269 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-2ubuntu1 [1118 B] Get:123 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-2ubuntu1 [5172 B] Get:124 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-2ubuntu1 [29.0 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dpkg-dev all 1.22.2ubuntu1 [1147 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdpkg-perl all 1.22.2ubuntu1 [285 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main s390x lto-disabled-list all 44 [12.4 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libfakeroot s390x 1.32.2-1 [31.5 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main s390x fakeroot s390x 1.32.2-1 [67.3 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main s390x optipng s390x 0.7.7-3 [87.0 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main s390x pinentry-curses s390x 1.2.1-3ubuntu1 [37.1 kB] Preconfiguring packages ... Fetched 95.5 MB in 13s (7383 kB/s) (Reading database ... 13395 files and directories currently installed.) Preparing to unpack .../00-libnsl-dev_1.3.0-3_s390x.deb ... Unpacking libnsl-dev:s390x (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../01-libc6-dev_2.38-3ubuntu1_s390x.deb ... Unpacking libc6-dev:s390x (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../02-libc-dev-bin_2.38-3ubuntu1_s390x.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../03-libtirpc-common_1.3.4+ds-1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1build1) over (1.3.3+ds-1) ... Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) over (1.3.3+ds-1) ... Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-5build1_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../06-libkrb5-3_1.20.1-5build1_s390x.deb ... 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Setting up libitm1:s390x (13.2.0-9ubuntu1) ... Setting up libgdbm6:s390x (1.23-5) ... Setting up libctf0:s390x (2.41.50.20231214-1ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.41.50.20231214-1ubuntu1) ... Setting up libreadline8:s390x (8.2-3) ... Setting up binutils (2.41.50.20231214-1ubuntu1) ... Setting up optipng (0.7.7-3) ... Setting up libgssapi-krb5-2:s390x (1.20.1-5build1) ... Setting up libgdbm-compat4:s390x (1.23-5) ... Setting up libgcc-13-dev:s390x (13.2.0-9ubuntu1) ... Setting up libperl5.36:s390x (5.36.0-10ubuntu1) ... Setting up libtirpc3:s390x (1.3.4+ds-1build1) ... Setting up perl (5.36.0-10ubuntu1) ... Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.2ubuntu1) ... Setting up libnsl2:s390x (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.2ubuntu1) ... Setting up libnsl-dev:s390x (1.3.0-3) ... Setting up libc6-dev:s390x (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:s390x (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27579290 s390x noble-proposed -c chroot:build-PACKAGEBUILD-27579290 --arch=s390x --dist=noble-proposed --nolog progressivemauve_1.2.0+4713+dfsg-5build2.dsc Initiating build PACKAGEBUILD-27579290 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:16 UTC 2023 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-002.buildd +==================================================================================+ | progressivemauve 1.2.0+4713+dfsg-5build2 (s390x) Wed, 20 Dec 2023 18:13:29 +0000 | +==================================================================================+ Package: progressivemauve Version: 1.2.0+4713+dfsg-5build2 Source Version: 1.2.0+4713+dfsg-5build2 Distribution: noble-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27579290/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/progressivemauve-6cvJ2d/resolver-S4CTJr' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- progressivemauve_1.2.0+4713+dfsg-5build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/progressivemauve-6cvJ2d/progressivemauve-1.2.0+4713+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/progressivemauve-6cvJ2d' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [511 B] Fetched 1897 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgenome-dev libgenome0 libicu-dev libicu74 libmagic-mgc libmagic1 libmems-dev libmems1 libmuscle-dev libmuscle1 libpipeline1 libpkgconf3 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkgconf pkgconf-bin po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-graph1.83-dev libboost-graph-parallel1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi1.83-dev libboost-mpi-python1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.83-dev icu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgenome-dev libgenome0 libicu-dev libicu74 libmagic-mgc libmagic1 libmems-dev libmems1 libmuscle-dev libmuscle1 libpipeline1 libpkgconf3 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkgconf pkgconf-bin po-debconf sbuild-build-depends-main-dummy 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 48.8 MB of archives. After this operation, 323 MB of additional disk space will be used. 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1.5.7-1 [23.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main s390x man-db s390x 2.12.0-1 [1242 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main s390x autopoint all 0.21-14 [422 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdebhelper-perl all 13.11.9ubuntu1 [97.7 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libtool all 2.4.7-7 [166 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main s390x dh-autoreconf all 20 [16.1 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main s390x 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[224 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost1.83-dev s390x 1.83.0-1ubuntu3 [10.7 MB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-atomic1.83.0 s390x 1.83.0-1ubuntu3 [239 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-atomic1.83-dev s390x 1.83.0-1ubuntu3 [235 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-filesystem1.83.0 s390x 1.83.0-1ubuntu3 [286 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-system1.83.0 s390x 1.83.0-1ubuntu3 [236 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-system1.83-dev s390x 1.83.0-1ubuntu3 [231 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libboost-filesystem1.83-dev s390x 1.83.0-1ubuntu3 [305 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libboost-filesystem-dev s390x 1.83.0.1ubuntu2 [4096 B] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-regex1.83.0 s390x 1.83.0-1ubuntu3 [351 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-regex1.83-dev s390x 1.83.0-1ubuntu3 [374 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-iostreams1.83.0 s390x 1.83.0-1ubuntu3 [259 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libboost-iostreams1.83-dev s390x 1.83.0-1ubuntu3 [264 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libboost-iostreams-dev s390x 1.83.0.1ubuntu2 [4048 B] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-program-options1.83.0 s390x 1.83.0-1ubuntu3 [325 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-program-options1.83-dev s390x 1.83.0-1ubuntu3 [396 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost-program-options-dev s390x 1.83.0.1ubuntu2 [4088 B] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libboost-system-dev s390x 1.83.0.1ubuntu2 [4206 B] Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x libgenome0 s390x 1.3.11+svn20110227.4616-6 [120 kB] Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x libgenome-dev s390x 1.3.11+svn20110227.4616-6 [202 kB] Get:54 http://ftpmaster.internal/ubuntu noble/universe s390x libmuscle1 s390x 3.7+4565-7ubuntu1 [253 kB] Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x libmems1 s390x 1.6.0+4725-9build2 [706 kB] Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libmuscle-dev s390x 3.7+4565-7ubuntu1 [329 kB] Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x libmems-dev s390x 1.6.0+4725-9build2 [1430 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] Preconfiguring packages ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:s390x (0.190-1) ... Setting up gettext (0.21-14) ... Setting up libtool (2.4.7-7) ... Setting up libboost-system-dev:s390x (1.83.0.1ubuntu2) ... Setting up libboost-filesystem1.83-dev:s390x (1.83.0-1ubuntu3) ... Setting up libmems1:s390x (1.6.0+4725-9build2) ... Setting up pkgconf:s390x (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up icu-devtools (74.2-1ubuntu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libicu-dev:s390x (74.2-1ubuntu1) ... Setting up libboost-filesystem-dev:s390x (1.83.0.1ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libboost-regex1.83-dev:s390x (1.83.0-1ubuntu3) ... Setting up libboost-iostreams1.83-dev:s390x (1.83.0-1ubuntu3) ... Setting up debhelper (13.11.9ubuntu1) ... Setting up libmems-dev (1.6.0+4725-9build2) ... Setting up libboost-iostreams-dev:s390x (1.83.0.1ubuntu2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:16 UTC 2023 s390x (s390x) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 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libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgenome-dev_1.3.11+svn20110227.4616-6 libgenome0_1.3.11+svn20110227.4616-6 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu6 libgomp1_13.2.0-9ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgssapi-krb5-2_1.20.1-5build1 libhogweed6_3.9.1-2 libicu-dev_74.2-1ubuntu1 libicu74_74.2-1ubuntu1 libidn2-0_2.3.4-1build1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-9ubuntu1 libjansson4_2.14-2 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 libkmod2_30+20230601-2ubuntu1 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmems-dev_1.6.0+4725-9build2 libmems1_1.6.0+4725-9build2 libmount1_2.39.2-6ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmuscle-dev_3.7+4565-7ubuntu1 libmuscle1_3.7+4565-7ubuntu1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu6 libp11-kit0_0.25.3-2ubuntu2 libpam-modules_1.5.2-9.1ubuntu1 libpam-modules-bin_1.5.2-9.1ubuntu1 libpam-runtime_1.5.2-9.1ubuntu1 libpam0g_1.5.2-9.1ubuntu1 libpcre2-8-0_10.42-4ubuntu1 libperl5.36_5.36.0-10ubuntu1 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-2 libpng16-16_1.6.40-2 libproc2-0_2:4.0.4-2ubuntu1 libreadline8_8.2-3 libseccomp2_2.5.4-2ubuntu1 libselinux1_3.5-1build2 libsemanage-common_3.5-1build1 libsemanage2_3.5-1build1 libsepol2_3.5-2 libsframe1_2.41.50.20231214-1ubuntu1 libsmartcols1_2.39.2-6ubuntu1 libsqlite3-0_3.44.2-1 libss2_1.47.0-2ubuntu1 libssl3_3.0.10-1ubuntu3 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255-1ubuntu1 libsystemd0_255-1ubuntu1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1build1 libtirpc-dev_1.3.4+ds-1build1 libtirpc3_1.3.4+ds-1build1 libtool_2.4.7-7 libubsan1_13.2.0-9ubuntu1 libuchardet0_0.0.8-1 libudev1_255-1ubuntu1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6ubuntu1 libxml2_2.9.14+dfsg-1.3build3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-3ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_44 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.2-6ubuntu1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 pkgconf_1.8.1-2 pkgconf-bin_1.8.1-2 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.4 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: progressivemauve Binary: progressivemauve Architecture: any Version: 1.2.0+4713+dfsg-5build2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://darlinglab.org/mauve/user-guide/mauvealigner.html Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/progressivemauve Vcs-Git: https://salsa.debian.org/med-team/progressivemauve.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev Package-List: progressivemauve deb science optional arch=any Checksums-Sha1: 3b09d613f64fa9237d8c0566c02823136a253208 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz 29439dd41bd1c38b2e93a5deff9c3e8d014d03a2 18044 progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz Checksums-Sha256: e5f43b4e5af5d6ddb6d4bac91a919d0d2706ff42f51a4209d2d15be8a12c3772 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz f9d4a51effc5951e41ad2179b706e16c23058e6ad037bbf4ca3ac270157c4069 18044 progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz Files: b9f9a0377aeccaa353cc4a491452003a 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz c1d027ebaa14e24125be2aa688a068c3 18044 progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz 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warning: cannot verify inline signature for ./progressivemauve_1.2.0+4713+dfsg-5build2.dsc: no acceptable signature found dpkg-source: info: extracting progressivemauve in /<> dpkg-source: info: unpacking progressivemauve_1.2.0+4713+dfsg.orig.tar.xz dpkg-source: info: unpacking progressivemauve_1.2.0+4713+dfsg-5build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_build.patch dpkg-source: info: applying do_not_build_static_binaries.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying use-native-getopt.patch dpkg-source: info: applying adapt-to-unversioned-libs.patch dpkg-source: info: applying fix_FTBFS_boost1.67.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27579290 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27579290 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27579290 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package progressivemauve dpkg-buildpackage: info: source version 1.2.0+4713+dfsg-5build2 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:12: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:12: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:745: AM_CONFIG_HEADER is expanded from... configure.ac:12: the top level configure.ac:27: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:27: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:27: the top level configure.ac:71: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:71: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:71: the top level configure.ac:91: warning: AC_OUTPUT should be used without arguments. configure.ac:91: You should run autoupdate. configure.ac:21: installing 'config/compile' configure.ac:9: installing 'config/config.guess' configure.ac:9: installing 'config/config.sub' configure.ac:11: installing 'config/install-sh' configure.ac:11: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am:12: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/Makefile.am: installing 'config/depcomp' src/Makefile.am:51: warning: variable 'EXTRA_mauveStatic_SOURCES' is defined but no program or src/Makefile.am:51: library has 'mauveStatic' as canonical name (possible typo) src/Makefile.am:49: warning: variable 'mauveStatic_SOURCES' is defined but no program or src/Makefile.am:49: library has 'mauveStatic' as canonical name (possible typo) src/Makefile.am:160: warning: variable 'progressiveMauveStatic_SOURCES' is defined but no program or src/Makefile.am:160: library has 'progressiveMauveStatic' as canonical name (possible typo) src/Makefile.am:50: warning: variable 'mauveStatic_LDADD' is defined but no program or src/Makefile.am:50: library has 'mauveStatic' as canonical name (possible typo) src/Makefile.am:161: warning: variable 'progressiveMauveStatic_LDADD' is defined but no program or src/Makefile.am:161: library has 'progressiveMauveStatic' as canonical name (possible typo) src/Makefile.am:52: warning: variable 'mauveStatic_DEPENDENCIES' is defined but no program or src/Makefile.am:52: library has 'mauveStatic' as canonical name (possible typo) dh_auto_configure -a ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking target system type... s390x-ibm-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether ln -s works... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for getopt_long... yes checking for getopt... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for DEPS... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for memset... yes checking for libintl.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for wchar.h... yes checking for GNU libc compatible malloc... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for size_t... yes checking how to run the C preprocessor... gcc -E checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/config.h config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-am make[3]: Entering directory '/<>/src' g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o mauveAligner.o mauveAligner.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o scoreAlignment.o scoreAlignment.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o uniqueMerCount.o uniqueMerCount.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o toRawSequence.o toRawSequence.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o mfa2xmfa.o mfa2xmfa.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from mauveAligner.cpp:30: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ mauveAligner.cpp:413:62: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 413 | cerr << "mauveAligner " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ mauveAligner.cpp:413:84: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 413 | cerr << "mauveAligner " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o addUnalignedIntervals.o addUnalignedIntervals.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o toMultiFastA.o toMultiFastA.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from addUnalignedIntervals.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from toMultiFastA.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o getAlignmentWindows.o getAlignmentWindows.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o uniquifyTrees.o uniquifyTrees.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from getAlignmentWindows.cpp:14: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o toGrimmFormat.o toGrimmFormat.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o mauveToXMFA.o mauveToXMFA.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o stripGapColumns.o stripGapColumns.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o progressiveMauve.o progressiveMauve.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from progressiveMauve.cpp:26: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ progressiveMauve.cpp:417:66: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 417 | cerr << "progressiveMauve " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ progressiveMauve.cpp:417:88: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 417 | cerr << "progressiveMauve " << " build date " << __DATE__ << " at " << __TIME__ << endl; | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o UniqueMatchFinder.o UniqueMatchFinder.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o extractBCITrees.o extractBCITrees.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o createBackboneMFA.o createBackboneMFA.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from createBackboneMFA.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o repeatoire.o repeatoire.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o alignmentProjector.o alignmentProjector.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from repeatoire.cpp:4: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/ProgressiveAligner.h:21, from alignmentProjector.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o stripSubsetLCBs.o stripSubsetLCBs.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o projectAndStrip.o projectAndStrip.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from projectAndStrip.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ projectAndStrip.cpp: In function ‘int main(int, char**)’: projectAndStrip.cpp:65:81: warning: conversion from ‘long unsigned int’ to ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 65 | not_ids[seq_ids[i]] = (std::numeric_limits::max)(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o makeBadgerMatrix.o makeBadgerMatrix.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o randomGeneSample.o randomGeneSample.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from randomGeneSample.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o getOrthologList.o getOrthologList.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from getOrthologList.cpp:18: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o bbFilter.o bbFilter.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/Backbone.h:24, from bbFilter.cpp:1: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o bbAnalyze.o bbAnalyze.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/Backbone.h:24, from bbAnalyze.cpp:4: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o backbone_global_to_local.o backbone_global_to_local.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o xmfa2maf.o xmfa2maf.cpp In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/Backbone.h:24, from backbone_global_to_local.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from /usr/include/c++/13/ext/hash_map:60, from /usr/include/libMems/HomologyHMM/dptables.h:43, from /usr/include/libMems/HomologyHMM/homology.h:27, from /usr/include/libMems/Islands.h:25, from /usr/include/libMems/ProgressiveAligner.h:21, from xmfa2maf.cpp:2: /usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE -Wdate-time -D_FORTIFY_SOURCE=3 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -c -o coordinateTranslate.o coordinateTranslate.cpp g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o mauveAligner mauveAligner.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o scoreAlignment scoreAlignment.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o uniqueMerCount uniqueMerCount.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o toRawSequence toRawSequence.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o mfa2xmfa mfa2xmfa.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o addUnalignedIntervals addUnalignedIntervals.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o toMultiFastA toMultiFastA.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o getAlignmentWindows getAlignmentWindows.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o uniquifyTrees uniquifyTrees.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o toGrimmFormat toGrimmFormat.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o mauveToXMFA mauveToXMFA.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o stripGapColumns stripGapColumns.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o progressiveMauve progressiveMauve.o UniqueMatchFinder.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o extractBCITrees extractBCITrees.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o createBackboneMFA createBackboneMFA.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o repeatoire repeatoire.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o alignmentProjector alignmentProjector.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o stripSubsetLCBs stripSubsetLCBs.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o projectAndStrip projectAndStrip.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o makeBadgerMatrix makeBadgerMatrix.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o randomGeneSample randomGeneSample.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o getOrthologList getOrthologList.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o bbFilter bbFilter.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o bbAnalyze bbAnalyze.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o backbone_global_to_local backbone_global_to_local.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o xmfa2maf xmfa2maf.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/progressivemauve-1.2.0+4713+dfsg-5build2 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o coordinateTranslate coordinateTranslate.o -lMems -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/progressivemauve/ -a make -j4 install DESTDIR=/<>/progressivemauve-1.2.0\+4713\+dfsg/debian/progressivemauve AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/<>/debian/progressivemauve/usr/bin' /usr/bin/install -c mauveAligner scoreAlignment uniqueMerCount toRawSequence mfa2xmfa addUnalignedIntervals toMultiFastA getAlignmentWindows uniquifyTrees toGrimmFormat mauveToXMFA stripGapColumns progressiveMauve extractBCITrees createBackboneMFA repeatoire alignmentProjector stripSubsetLCBs projectAndStrip makeBadgerMatrix randomGeneSample getOrthologList bbFilter bbAnalyze backbone_global_to_local xmfa2maf coordinateTranslate '/<>/debian/progressivemauve/usr/bin' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/progressivemauve/usr/bin/randomGeneSample: Unknown DWARF DW_FORM_0x1f20 b3493efc71783cbeb4e0f240861d341ffe0f35f3 debugedit: debian/progressivemauve/usr/bin/xmfa2maf: Unknown DWARF DW_FORM_0x1f20 397e67c180dd8cf23b3055355768b3135a9ab0fa debugedit: debian/progressivemauve/usr/bin/alignmentProjector: Unknown DWARF DW_FORM_0x1f20 5eef842995d0253823f9b717003ad2440a5d6683 debugedit: debian/progressivemauve/usr/bin/toRawSequence: Unknown DWARF DW_FORM_0x1f21 5207379b3e2a4d0fad44adba2284363c8a68e5ff debugedit: debian/progressivemauve/usr/bin/getAlignmentWindows: Unknown DWARF DW_FORM_0x1f20 5610a470c5e864c03453e035c49f9886ee668d22 debugedit: debian/progressivemauve/usr/bin/progressiveMauve: Unknown DWARF DW_FORM_0x1f20 8f38595ac811c3cc95c339c05d0b12142b0865a5 debugedit: debian/progressivemauve/usr/bin/createBackboneMFA: Unknown DWARF DW_FORM_0x1f20 0cfd04553abf980ba7db25102b2fb821995e980c debugedit: debian/progressivemauve/usr/bin/getOrthologList: Unknown DWARF DW_FORM_0x1f20 e0786301aea209d275b6cd704bfb18867b304b17 debugedit: debian/progressivemauve/usr/bin/mauveToXMFA: Unknown DWARF DW_FORM_0x1f20 09eaa1371ce45fdd10a209ad01a726e79b5dc3a8 debugedit: debian/progressivemauve/usr/bin/backbone_global_to_local: Unknown DWARF DW_FORM_0x1f20 485286a783474bf948090b06e4b7d40375c7aa72 debugedit: debian/progressivemauve/usr/bin/uniqueMerCount: Unknown DWARF DW_FORM_0x1f21 f8cf0170fc3427e8960c9c1e3911d33490aeb124 debugedit: debian/progressivemauve/usr/bin/toMultiFastA: Unknown DWARF DW_FORM_0x1f20 d62188bc7d4e28f98b41ec6bbb1b90106e00b3a4 debugedit: debian/progressivemauve/usr/bin/stripSubsetLCBs: Unknown DWARF DW_FORM_0x1f20 0949bb0cd766f8edc8ae5961c3c94435d1c2146f debugedit: debian/progressivemauve/usr/bin/repeatoire: Unknown DWARF DW_FORM_0x1f20 9a8c285778ab7cf74a44da87e3b33424899cb81f debugedit: debian/progressivemauve/usr/bin/toGrimmFormat: Unknown DWARF DW_FORM_0x1f20 37dc2142d740bad08c8ae251172ec4908b5ccae8 debugedit: debian/progressivemauve/usr/bin/bbFilter: Unknown DWARF DW_FORM_0x1f20 b3c02686168c6be731cbdb0fcfac4894a29dd41e debugedit: debian/progressivemauve/usr/bin/addUnalignedIntervals: Unknown DWARF DW_FORM_0x1f20 3f02053c6305fb61b524194ba82fe3774b9606ee debugedit: debian/progressivemauve/usr/bin/bbAnalyze: Unknown DWARF DW_FORM_0x1f20 5d6e1731b3cd4fcb1faf8dcf7090d228ed3250a3 debugedit: debian/progressivemauve/usr/bin/coordinateTranslate: Unknown DWARF DW_FORM_0x1f20 3c3ba444ffb17b4b1c45415414f1d60451f2b294 debugedit: debian/progressivemauve/usr/bin/mfa2xmfa: Unknown DWARF DW_FORM_0x1f21 bbe099c3fff20fc5a46c9e76a416676805794ba7 debugedit: debian/progressivemauve/usr/bin/stripGapColumns: Unknown DWARF DW_FORM_0x1f20 a3764c0324220d801f1d909c4a09596b6131ce26 debugedit: debian/progressivemauve/usr/bin/scoreAlignment: Unknown DWARF DW_FORM_0x1f20 90cd8a4f0ccee6fb34d836252c89620ccf5777de debugedit: debian/progressivemauve/usr/bin/extractBCITrees: Unknown DWARF DW_FORM_0x1f20 e80f82ff05adb24107185bc2b2e471177561fa0c debugedit: debian/progressivemauve/usr/bin/makeBadgerMatrix: Unknown DWARF DW_FORM_0x1f20 a84a90c3b52f572a46d7e916208f49f32a65daa4 debugedit: debian/progressivemauve/usr/bin/uniquifyTrees: Unknown DWARF DW_FORM_0x1f20 ef570d5293315d2101255f16710ffe09d678072a debugedit: debian/progressivemauve/usr/bin/projectAndStrip: Unknown DWARF DW_FORM_0x1f20 4ecf1342f74337ae3e770cdf64bb98a3f27f1c43 debugedit: debian/progressivemauve/usr/bin/mauveAligner: Unknown DWARF DW_FORM_0x1f20 e39b0cc205c64cb43dc201e7b38d8b280f3f7b7b dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing progressivemauve (in debian/progressivemauve); do_strip: , oemstrip: pkgstriptranslations: processing progressivemauve-dbgsym (in debian/.debhelper/progressivemauve/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/progressivemauve/DEBIAN/control, package progressivemauve, directory debian/progressivemauve pkgstripfiles: Running PNG optimization (using 4 cpus) for package progressivemauve ... pkgstripfiles: No PNG files. dpkg-deb: building package 'progressivemauve' in '../progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb'. pkgstripfiles: processing control file: debian/.debhelper/progressivemauve/dbgsym-root/DEBIAN/control, package progressivemauve-dbgsym, directory debian/.debhelper/progressivemauve/dbgsym-root dpkg-deb: building package 'progressivemauve-dbgsym' in 'debian/.debhelper/scratch-space/build-progressivemauve/progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.deb'. Renaming progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.deb to progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.ddeb dpkg-genbuildinfo --build=any -O../progressivemauve_1.2.0+4713+dfsg-5build2_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../progressivemauve_1.2.0+4713+dfsg-5build2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-20T18:16:01Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ progressivemauve_1.2.0+4713+dfsg-5build2_s390x.changes: ------------------------------------------------------- Format: 1.8 Date: Tue, 19 Dec 2023 20:44:40 +0100 Source: progressivemauve Binary: progressivemauve Built-For-Profiles: noudeb Architecture: s390x Version: 1.2.0+4713+dfsg-5build2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: progressivemauve - multiple genome alignment algorithms Changes: progressivemauve (1.2.0+4713+dfsg-5build2) noble; urgency=medium . * No-change rebuild for boost defaults change. Checksums-Sha1: 1a0eb996fd56a5689be4c0f8c8e22f8c407a8249 12933966 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.ddeb 4a5779c789072b01aa5ae4232e960546f1c25a3b 6960 progressivemauve_1.2.0+4713+dfsg-5build2_s390x.buildinfo 5d224654dee04c3f3c833b47bbc2aed98d2775a1 1188296 progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb Checksums-Sha256: 4a0f7b2237874b7aae5235407e2b73114831aba5a1640984a04adb2a35b21f97 12933966 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.ddeb 11a5951a06d78d8fbf8c735f0d202651f9658446b2cfc21f08d8bcc2117d8c4b 6960 progressivemauve_1.2.0+4713+dfsg-5build2_s390x.buildinfo 82d6c2299c1b045158a5cb1f3cdce82ecc237b77f71b0ca9fa89127b6c43a2d4 1188296 progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb Files: 099360a592299d5a627fae673f28241a 12933966 debug optional progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.ddeb 11d557eb60aa1da1f4953f250459d704 6960 science optional progressivemauve_1.2.0+4713+dfsg-5build2_s390x.buildinfo 0abb9a581ff50bf9eec845455093c74f 1188296 science optional progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb /<>/progressivemauve_1.2.0+4713+dfsg-5build2_s390x.changes.new could not be renamed to /<>/progressivemauve_1.2.0+4713+dfsg-5build2_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: progressivemauve Binary: progressivemauve progressivemauve-dbgsym Architecture: s390x Version: 1.2.0+4713+dfsg-5build2 Checksums-Md5: 099360a592299d5a627fae673f28241a 12933966 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.ddeb 0abb9a581ff50bf9eec845455093c74f 1188296 progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb Checksums-Sha1: 1a0eb996fd56a5689be4c0f8c8e22f8c407a8249 12933966 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.ddeb 5d224654dee04c3f3c833b47bbc2aed98d2775a1 1188296 progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb Checksums-Sha256: 4a0f7b2237874b7aae5235407e2b73114831aba5a1640984a04adb2a35b21f97 12933966 progressivemauve-dbgsym_1.2.0+4713+dfsg-5build2_s390x.ddeb 82d6c2299c1b045158a5cb1f3cdce82ecc237b77f71b0ca9fa89127b6c43a2d4 1188296 progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Wed, 20 Dec 2023 18:16:00 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), binutils-s390x-linux-gnu (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.9ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2ubuntu1), dpkg-dev (= 1.22.2ubuntu1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231214-1ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libboost-atomic1.83-dev (= 1.83.0-1ubuntu3), libboost-atomic1.83.0 (= 1.83.0-1ubuntu3), libboost-dev (= 1.83.0.1ubuntu2), libboost-filesystem-dev (= 1.83.0.1ubuntu2), libboost-filesystem1.83-dev (= 1.83.0-1ubuntu3), libboost-filesystem1.83.0 (= 1.83.0-1ubuntu3), libboost-iostreams-dev (= 1.83.0.1ubuntu2), libboost-iostreams1.83-dev (= 1.83.0-1ubuntu3), libboost-iostreams1.83.0 (= 1.83.0-1ubuntu3), libboost-program-options-dev (= 1.83.0.1ubuntu2), libboost-program-options1.83-dev (= 1.83.0-1ubuntu3), libboost-program-options1.83.0 (= 1.83.0-1ubuntu3), libboost-regex1.83-dev (= 1.83.0-1ubuntu3), libboost-regex1.83.0 (= 1.83.0-1ubuntu3), libboost-system-dev (= 1.83.0.1ubuntu2), libboost-system1.83-dev (= 1.83.0-1ubuntu3), libboost-system1.83.0 (= 1.83.0-1ubuntu3), libboost1.83-dev (= 1.83.0-1ubuntu3), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.9ubuntu1), libdpkg-perl (= 1.22.2ubuntu1), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgenome-dev (= 1.3.11+svn20110227.4616-6), libgenome0 (= 1.3.11+svn20110227.4616-6), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgssapi-krb5-2 (= 1.20.1-5build1), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmems-dev (= 1.6.0+4725-9build2), libmems1 (= 1.6.0+4725-9build2), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmuscle-dev (= 3.7+4565-7ubuntu1), libmuscle1 (= 3.7+4565-7ubuntu1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-2), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255-1ubuntu1), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1build1), libtirpc-dev (= 1.3.4+ds-1build1), libtirpc3 (= 1.3.4+ds-1build1), libtool (= 2.4.7-7), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libxml2 (= 2.9.14+dfsg-1.3build3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.4), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1703015080" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ progressivemauve_1.2.0+4713+dfsg-5build2_s390x.deb -------------------------------------------------- new Debian package, version 2.0. size 1188296 bytes: control archive=2544 bytes. 2049 bytes, 37 lines control 2744 bytes, 42 lines md5sums Package: progressivemauve Version: 1.2.0+4713+dfsg-5build2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4565 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgenome0 (>= 1.3.11+svn20110227.4616), libmems1 (>= 1.6.0+4725), libstdc++6 (>= 13.1) Enhances: mauve-aligner Section: science Priority: optional Homepage: https://darlinglab.org/mauve/user-guide/mauvealigner.html Description: multiple genome alignment algorithms The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface. . Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. . Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. . Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. . Mauve is developed at the University of Wisconsin. drwxr-xr-x root/root 0 2023-12-19 19:44 ./ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/bin/ -rwxr-xr-x root/root 153880 2023-12-19 19:44 ./usr/bin/addUnalignedIntervals -rwxr-xr-x root/root 215328 2023-12-19 19:44 ./usr/bin/alignmentProjector -rwxr-xr-x root/root 153880 2023-12-19 19:44 ./usr/bin/backbone_global_to_local -rwxr-xr-x root/root 342296 2023-12-19 19:44 ./usr/bin/bbAnalyze -rwxr-xr-x root/root 108808 2023-12-19 19:44 ./usr/bin/bbFilter -rwxr-xr-x root/root 149784 2023-12-19 19:44 ./usr/bin/coordinateTranslate -rwxr-xr-x root/root 149784 2023-12-19 19:44 ./usr/bin/createBackboneMFA -rwxr-xr-x root/root 84152 2023-12-19 19:44 ./usr/bin/extractBCITrees -rwxr-xr-x root/root 178456 2023-12-19 19:44 ./usr/bin/getAlignmentWindows -rwxr-xr-x root/root 227608 2023-12-19 19:44 ./usr/bin/getOrthologList -rwxr-xr-x root/root 153888 2023-12-19 19:44 ./usr/bin/makeBadgerMatrix -rwxr-xr-x root/root 221080 2023-12-19 19:44 ./usr/bin/mauveAligner -rwxr-xr-x root/root 149784 2023-12-19 19:44 ./usr/bin/mauveToXMFA -rwxr-xr-x root/root 26888 2023-12-19 19:44 ./usr/bin/mfa2xmfa -rwxr-xr-x root/root 274320 2023-12-19 19:44 ./usr/bin/progressiveMauve -rwxr-xr-x root/root 190752 2023-12-19 19:44 ./usr/bin/projectAndStrip -rwxr-xr-x root/root 198936 2023-12-19 19:44 ./usr/bin/randomGeneSample -rwxr-xr-x root/root 581536 2023-12-19 19:44 ./usr/bin/repeatoire -rwxr-xr-x root/root 166168 2023-12-19 19:44 ./usr/bin/scoreAlignment -rwxr-xr-x root/root 157976 2023-12-19 19:44 ./usr/bin/stripGapColumns -rwxr-xr-x root/root 166176 2023-12-19 19:44 ./usr/bin/stripSubsetLCBs -rwxr-xr-x root/root 145680 2023-12-19 19:44 ./usr/bin/toGrimmFormat -rwxr-xr-x root/root 149784 2023-12-19 19:44 ./usr/bin/toMultiFastA -rwxr-xr-x root/root 14600 2023-12-19 19:44 ./usr/bin/toRawSequence -rwxr-xr-x root/root 14600 2023-12-19 19:44 ./usr/bin/uniqueMerCount -rwxr-xr-x root/root 63672 2023-12-19 19:44 ./usr/bin/uniquifyTrees -rwxr-xr-x root/root 157976 2023-12-19 19:44 ./usr/bin/xmfa2maf drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/doc/progressivemauve/ -rw-r--r-- root/root 261 2020-11-30 16:33 ./usr/share/doc/progressivemauve/README.test -rw-r--r-- root/root 588 2023-12-19 19:44 ./usr/share/doc/progressivemauve/changelog.Debian.gz -rw-r--r-- root/root 776 2020-11-30 16:33 ./usr/share/doc/progressivemauve/copyright -rw-r--r-- root/root 1280 2020-11-30 16:33 ./usr/share/doc/progressivemauve/run-unit-test drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/doc/progressivemauve/test_data/ -rw-r--r-- root/root 2203 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/all_virii.fasta.gz -rw-r--r-- root/root 2848 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/genome_1.gbk.gz -rw-r--r-- root/root 2879 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/genome_2.gbk.gz -rw-r--r-- root/root 2878 2020-11-30 16:33 ./usr/share/doc/progressivemauve/test_data/genome_3.gbk.gz drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-19 19:44 ./usr/share/man/man1/ -rw-r--r-- root/root 1122 2023-12-19 19:44 ./usr/share/man/man1/addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/alignmentProjector.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/backbone_global_to_local.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/bbAnalyze.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 515 2023-12-19 19:44 ./usr/share/man/man1/bbFilter.1.gz -rw-r--r-- root/root 373 2023-12-19 19:44 ./usr/share/man/man1/coordinateTranslate.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/createBackboneMFA.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 525 2023-12-19 19:44 ./usr/share/man/man1/extractBCITrees.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/getAlignmentWindows.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/getOrthologList.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/makeBadgerMatrix.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 1516 2023-12-19 19:44 ./usr/share/man/man1/mauveAligner.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/mauveToXMFA.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/mfa2xmfa.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 1987 2023-12-19 19:44 ./usr/share/man/man1/progressiveMauve.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/projectAndStrip.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/randomGeneSample.1.gz -> addUnalignedIntervals.1.gz -rw-r--r-- root/root 919 2023-12-19 19:44 ./usr/share/man/man1/repeatoire.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/scoreAlignment.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/stripGapColumns.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/stripSubsetLCBs.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/toGrimmFormat.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/toMultiFastA.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/toRawSequence.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/uniqueMerCount.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/uniquifyTrees.1.gz -> addUnalignedIntervals.1.gz lrwxrwxrwx root/root 0 2023-12-19 19:44 ./usr/share/man/man1/xmfa2maf.1.gz -> addUnalignedIntervals.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 316436 Build-Time: 140 Distribution: noble-proposed Host Architecture: s390x Install-Time: 12 Job: progressivemauve_1.2.0+4713+dfsg-5build2.dsc Machine Architecture: s390x Package: progressivemauve Package-Time: 152 Source-Version: 1.2.0+4713+dfsg-5build2 Space: 316436 Status: successful Version: 1.2.0+4713+dfsg-5build2 -------------------------------------------------------------------------------- Finished at 2023-12-20T18:16:01Z Build needed 00:02:32, 316436k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27579290 Scanning for processes to kill in build PACKAGEBUILD-27579290