RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux denneed08 4.4.0-43-powerpc64-smp #63-Ubuntu SMP Wed Oct 12 14:10:11 UTC 2016 ppc64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 2 Nov 05:45:44 ntpdate[10244]: adjust time server 10.211.37.1 offset -0.000027 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11123062', '/home/buildd/filecache-default/f0d95331816c2600b41a871127347d3aa3e00e52'] Unpacking chroot for build PACKAGEBUILD-11123062 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11123062'] Mounting chroot for build PACKAGEBUILD-11123062 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11123062', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11123062 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11123062', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-11123062 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [92.1 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [95.6 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main powerpc Packages [1168 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [583 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe powerpc Packages [7472 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4486 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc Packages [124 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [82.6 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe powerpc Packages [212 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [156 kB] Fetched 14.8 MB in 27s (532 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser base-files binutils cpp-6 dmsetup g++-6 gcc-6 gcc-6-base libapparmor1 libasan3 libatomic1 libcc1-0 libdevmapper1.02.1 libgcc-6-dev libgcc1 libgomp1 libksba8 libldap-2.4-2 liblzma5 libsepol1 libstdc++-6-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev perl perl-base systemd systemd-sysv tzdata ubuntu-keyring xz-utils 33 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 34.2 MB of archives. After this operation, 36.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main powerpc base-files powerpc 9.6ubuntu6 [55.8 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main powerpc perl-modules-5.24 all 5.24.1~rc3-3 [2661 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main powerpc libperl5.24 powerpc 5.24.1~rc3-3 [2852 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main powerpc perl powerpc 5.24.1~rc3-3 [237 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main powerpc perl-base powerpc 5.24.1~rc3-3 [1205 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main powerpc libapparmor1 powerpc 2.10.95-4ubuntu5.2 [28.1 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main powerpc liblzma5 powerpc 5.2.2-1.2 [91.2 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main powerpc adduser all 3.113+nmu3ubuntu5 [161 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main powerpc systemd powerpc 231-10 [2078 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main powerpc libsystemd0 powerpc 231-10 [186 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main powerpc systemd-sysv powerpc 231-10 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main powerpc libgomp1 powerpc 6.2.0-10ubuntu1 [69.5 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main powerpc libcc1-0 powerpc 6.2.0-10ubuntu1 [30.1 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main powerpc libatomic1 powerpc 6.2.0-10ubuntu1 [7444 B] Get:15 http://ftpmaster.internal/ubuntu zesty/main powerpc libasan3 powerpc 6.2.0-10ubuntu1 [261 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main powerpc libubsan0 powerpc 6.2.0-10ubuntu1 [104 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main powerpc gcc-6-base powerpc 6.2.0-10ubuntu1 [17.4 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main powerpc libstdc++6 powerpc 6.2.0-10ubuntu1 [410 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main powerpc g++-6 powerpc 6.2.0-10ubuntu1 [6249 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main powerpc libstdc++-6-dev powerpc 6.2.0-10ubuntu1 [1393 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main powerpc libgcc-6-dev powerpc 6.2.0-10ubuntu1 [555 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main powerpc gcc-6 powerpc 6.2.0-10ubuntu1 [6027 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main powerpc cpp-6 powerpc 6.2.0-10ubuntu1 [5515 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main powerpc libgcc1 powerpc 1:6.2.0-10ubuntu1 [26.9 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc binutils powerpc 2.27-9ubuntu1 [2218 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libsepol1 powerpc 2.6-1 [183 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main powerpc libudev1 powerpc 231-10 [52.5 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main powerpc ubuntu-keyring all 2016.10.27 [16.6 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main powerpc tzdata all 2016h-1 [169 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main powerpc libdevmapper1.02.1 powerpc 2:1.02.133-1ubuntu1 [136 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main powerpc dmsetup powerpc 2:1.02.133-1ubuntu1 [70.0 kB] Get:32 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libksba8 powerpc 1.3.5-2 [80.0 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main powerpc libldap-2.4-2 powerpc 2.4.42+dfsg-2ubuntu5 [141 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main powerpc xz-utils powerpc 5.2.2-1.2 [83.0 kB] Get:35 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc linux-libc-dev powerpc 4.8.0-27.29 [843 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.2 MB in 1min 38s (348 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12106 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu6_powerpc.deb ... Unpacking base-files (9.6ubuntu6) over (9.6ubuntu5) ... Setting up base-files (9.6ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 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Unpacking adduser (3.113+nmu3ubuntu5) over (3.113+nmu3ubuntu4) ... Setting up adduser (3.113+nmu3ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13896 files and directories currently installed.) Preparing to unpack .../0-systemd_231-10_powerpc.deb ... Unpacking systemd (231-10) over (231-9git1) ... Preparing to unpack .../1-libsystemd0_231-10_powerpc.deb ... Unpacking libsystemd0:powerpc (231-10) over (231-9git1) ... Setting up libsystemd0:powerpc (231-10) ... Setting up libapparmor1:powerpc (2.10.95-4ubuntu5.2) ... Setting up systemd (231-10) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13892 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_231-10_powerpc.deb ... Unpacking systemd-sysv (231-10) over (231-9git1) ... 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Unpacking dmsetup (2:1.02.133-1ubuntu1) over (2:1.02.130-1ubuntu1) ... Preparing to unpack .../3-libksba8_1.3.5-2_powerpc.deb ... Unpacking libksba8:powerpc (1.3.5-2) over (1.3.4-4) ... Preparing to unpack .../4-libldap-2.4-2_2.4.42+dfsg-2ubuntu5_powerpc.deb ... Unpacking libldap-2.4-2:powerpc (2.4.42+dfsg-2ubuntu5) over (2.4.42+dfsg-2ubuntu4) ... Preparing to unpack .../5-xz-utils_5.2.2-1.2_powerpc.deb ... Unpacking xz-utils (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Preparing to unpack .../6-linux-libc-dev_4.8.0-27.29_powerpc.deb ... Unpacking linux-libc-dev:powerpc (4.8.0-27.29) over (4.8.0-22.24) ... Setting up libgomp1:powerpc (6.2.0-10ubuntu1) ... Setting up libatomic1:powerpc (6.2.0-10ubuntu1) ... Setting up perl-modules-5.24 (5.24.1~rc3-3) ... Setting up libperl5.24:powerpc (5.24.1~rc3-3) ... Setting up libcc1-0:powerpc (6.2.0-10ubuntu1) ... Setting up libasan3:powerpc (6.2.0-10ubuntu1) ... Setting up tzdata (2016h-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Nov 2 09:48:03 UTC 2016. Universal Time is now: Wed Nov 2 09:48:03 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (231-10) ... Setting up libubsan0:powerpc (6.2.0-10ubuntu1) ... Setting up linux-libc-dev:powerpc (4.8.0-27.29) ... Setting up libksba8:powerpc (1.3.5-2) ... Setting up libdevmapper1.02.1:powerpc (2:1.02.133-1ubuntu1) ... Setting up perl (5.24.1~rc3-3) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up libldap-2.4-2:powerpc (2.4.42+dfsg-2ubuntu5) ... Setting up xz-utils (5.2.2-1.2) ... Setting up dmsetup (2:1.02.133-1ubuntu1) ... Setting up binutils (2.27-9ubuntu1) ... Setting up cpp-6 (6.2.0-10ubuntu1) ... Setting up libgcc-6-dev:powerpc (6.2.0-10ubuntu1) ... Setting up libstdc++-6-dev:powerpc (6.2.0-10ubuntu1) ... Setting up gcc-6 (6.2.0-10ubuntu1) ... Setting up g++-6 (6.2.0-10ubuntu1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11123062', 'powerpc', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=powerpc', '--dist=zesty-proposed', '--purge=never', '--nolog', 'proteinortho_5.15+dfsg-1.dsc'] Initiating build PACKAGEBUILD-11123062 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-43-powerpc64-smp #63-Ubuntu SMP Wed Oct 12 14:10:11 UTC 2016 ppc sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on denneed08.buildd +==============================================================================+ | proteinortho 5.15+dfsg-1 (powerpc) 02 Nov 2016 05:48 | +==============================================================================+ Package: proteinortho Version: 5.15+dfsg-1 Source Version: 5.15+dfsg-1 Distribution: zesty-proposed Machine Architecture: powerpc Host Architecture: powerpc Build Architecture: powerpc I: NOTICE: Log filtering will replace 'build/proteinortho-28X0kc/proteinortho-5.15+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-28X0kc' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11123062/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- proteinortho_5.15+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-3b9896/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-3b9896/apt_archive ./ InRelease Get:2 copy:/<>/resolver-3b9896/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-3b9896/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-3b9896/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-3b9896/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (195 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-3b9896/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 9), ncbi-blast+ Filtered Build-Depends: debhelper (>= 9), ncbi-blast+ dpkg-deb: building package 'sbuild-build-depends-proteinortho-dummy' in '/<>/resolver-ANe_rJ/apt_archive/sbuild-build-depends-proteinortho-dummy.deb'. Ign:1 copy:/<>/resolver-ANe_rJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ANe_rJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ANe_rJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ANe_rJ/apt_archive ./ Sources [221 B] Get:5 copy:/<>/resolver-ANe_rJ/apt_archive ./ Packages [543 B] Fetched 2883 B in 0s (202 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install proteinortho build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support ncbi-blast+ ncbi-data po-debconf python python-minimal python2.7 python2.7-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support ncbi-blast+ ncbi-data po-debconf python python-minimal python2.7 python2.7-minimal sbuild-build-depends-proteinortho-dummy 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 31.2 MB of archives. After this operation, 151 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ANe_rJ/apt_archive ./ sbuild-build-depends-proteinortho-dummy 0.invalid.0 [784 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main powerpc groff-base powerpc 1.22.3-8 [1194 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main powerpc bsdmainutils powerpc 9.0.6ubuntu3 [172 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main powerpc libpipeline1 powerpc 1.4.1-2 [24.2 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main powerpc man-db powerpc 2.7.5-1 [835 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main powerpc libunistring0 powerpc 0.9.3-5.2ubuntu1 [254 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main powerpc libpython2.7-minimal powerpc 2.7.12-3build1 [340 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main powerpc python2.7-minimal powerpc 2.7.12-3build1 [1245 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main powerpc python-minimal powerpc 2.7.11-2 [28.3 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main powerpc mime-support all 3.60ubuntu1 [30.1 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main powerpc libexpat1 powerpc 2.2.0-1 [63.9 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main powerpc libpython2.7-stdlib powerpc 2.7.12-3build1 [1860 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main powerpc python2.7 powerpc 2.7.12-3build1 [225 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main powerpc libpython-stdlib powerpc 2.7.11-2 [7856 B] Get:15 http://ftpmaster.internal/ubuntu zesty/main powerpc python powerpc 2.7.11-2 [139 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main powerpc libmagic1 powerpc 1:5.28-2ubuntu1 [232 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main powerpc file powerpc 1:5.28-2ubuntu1 [21.7 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main powerpc gettext-base powerpc 0.19.8.1-1ubuntu2 [45.5 kB] Get:19 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libglib2.0-0 powerpc 2.50.1-1 [984 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main powerpc libicu57 powerpc 57.1-4 [7478 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main powerpc libxml2 powerpc 2.9.4+dfsg1-2 [573 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main powerpc libsigsegv2 powerpc 2.10-5 [13.6 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main powerpc m4 powerpc 1.4.17-5 [185 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main powerpc autoconf all 2.69-10 [321 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main powerpc autotools-dev all 20160430.1 [39.6 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main powerpc automake all 1:1.15-4ubuntu1 [510 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main powerpc autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:28 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libtool all 2.4.6-2 [194 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main powerpc dh-autoreconf all 12 [15.8 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main powerpc libarchive-zip-perl all 1.59-1 [84.0 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main powerpc libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main powerpc libtimedate-perl all 2.3000-2 [37.5 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main powerpc dh-strip-nondeterminism all 0.028-1 [4820 B] Get:34 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libcroco3 powerpc 0.6.11-2 [68.5 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main powerpc gettext powerpc 0.19.8.1-1ubuntu2 [1018 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main powerpc intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:37 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc po-debconf all 1.0.20 [232 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main powerpc debhelper all 10.2.2ubuntu1 [742 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/universe powerpc ncbi-data all 6.1.20120620-11 [3261 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/universe powerpc ncbi-blast+ powerpc 2.4.0-3 [8284 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.2 MB in 1min 30s (345 kB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13888 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-8_powerpc.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.6ubuntu3_powerpc.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:powerpc. 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Preparing to unpack .../26-sbuild-build-depends-proteinortho-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-proteinortho-dummy (0.invalid.0) ... Setting up libexpat1:powerpc (2.2.0-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:powerpc (2.10-5) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:powerpc (2.50.1-1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libpipeline1:powerpc (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:powerpc (57.1-4) ... Setting up libxml2:powerpc (2.9.4+dfsg1-2) ... Setting up libmagic1:powerpc (1:5.28-2ubuntu1) ... Setting up libcroco3:powerpc (0.6.11-2) ... Setting up ncbi-data (6.1.20120620-11) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:powerpc (2.7.12-3build1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up python2.7 (2.7.12-3build1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up libpython-stdlib:powerpc (2.7.11-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python (2.7.11-2) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up ncbi-blast+ (2.4.0-3) ... Setting up dh-autoreconf (12) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-proteinortho-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-43-powerpc64-smp powerpc (ppc) Toolchain package versions: binutils_2.27-9ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.0-10ubuntu1 gcc-6_6.2.0-10ubuntu1 libc6-dev_2.24-3ubuntu1 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 linux-libc-dev_4.8.0-27.29 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 apt_1.3.1 apt-transport-https_1.3.1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu6 base-passwd_3.5.40 bash_4.3-15ubuntu1 binutils_2.27-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.2-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-6_6.2.0-10ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.3-3 dmsetup_2:1.02.133-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-6_6.2.0-10ubuntu1 gcc_4:6.1.1-1ubuntu2 gcc-6_6.2.0-10ubuntu1 gcc-6-base_6.2.0-10ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-10ubuntu1 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libassuan0_2.4.3-1 libatomic1_6.2.0-10ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.28.2-1ubuntu1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-3ubuntu1 libc-dev-bin_2.24-3ubuntu1 libc6_2.24-3ubuntu1 libc6-dev_2.24-3ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.0-10ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.133-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libexpat1_2.2.0-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.2-1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libgcc-6-dev_6.2.0-10ubuntu1 libgcc1_1:6.2.0-10ubuntu1 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libglib2.0-0_2.50.1-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-5ubuntu1 libgomp1_6.2.0-10ubuntu1 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.3+dfsg-2 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic1_1:5.28-2ubuntu1 libmount1_2.28.2-1ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libnpth0_1.2-3 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpng16-16_1.6.25-1 libprocps6_2:3.3.12-1ubuntu2 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-3build1 libpython2.7-stdlib_2.7.12-3build1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28.2-1ubuntu1 libsqlite3-0_3.14.1-1build1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu9 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 libsystemd0_231-10 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.2.0-10ubuntu1 libudev1_231-10 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1ubuntu1 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.4+dfsg1-2 linux-libc-dev_4.8.0-27.29 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.28.2-1ubuntu1 multiarch-support_2.24-3ubuntu1 ncbi-blast+_2.4.0-3 ncbi-data_6.1.20120620-11 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu9 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-5 pkg-create-dbgsym_0.72 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-3build1 python2.7-minimal_2.7.12-3build1 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proteinortho-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 systemd_231-10 systemd-sysv_231-10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016h-1 ubuntu-keyring_2016.10.27 util-linux_2.28.2-1ubuntu1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Aug 29 13:14:07 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proteinortho_5.15+dfsg-1.dsc dpkg-source: info: extracting proteinortho in proteinortho-5.15+dfsg dpkg-source: info: unpacking proteinortho_5.15+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_5.15+dfsg-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<>/proteinortho-5.15+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>/proteinortho-5.15+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 5.15+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build proteinortho-5.15+dfsg dpkg-buildpackage: info: host architecture powerpc fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a dh_auto_build -a make -j1 make[1]: Entering directory '/<>/proteinortho-5.15+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -Wno-unused-result -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o proteinortho5_clustering proteinortho5_clustering.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -Wno-unused-result -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o proteinortho5_tree po_tree.c make[1]: Leaving directory '/<>/proteinortho-5.15+dfsg' dh_auto_test -a make -j1 test make[1]: Entering directory '/<>/proteinortho-5.15+dfsg' ./proteinortho5.pl -project=test -synteny -singles test/*.faa ***************************************************************** Proteinortho with PoFF version 5.15 - An orthology detection tool ***************************************************************** Detected 4 available CPU threads, Detected NCBI BLAST version 2.4.0+ Checking input files test/C.faa 308 genes test/E.faa 310 genes test/L.faa 41 genes test/M.faa 40 genes **Step 1** Generating indices Building database for 'test/E.faa' (310 sequences) Building database for 'test/C.faa' (308 sequences) Building database for 'test/L.faa' (41 sequences) Building database for 'test/M.faa' (40 sequences) **Step 2** Running blast analysis: 0% (0/6) Running blast analysis: 16.66% (1/6) Running blast analysis: 33.33% (2/6) Running blast analysis: 100% (6/6) Running blast analysis: 50% (3/6) Running blast analysis: 66.66% (4/6) Running blast analysis: 83.33% (5/6) Running blast analysis: 100% (6/6) -> Output written to test.blast-graph **Step 3** Clustering by similarity (Proteinortho mode) Reading test.blast-graph 4 species 150 paired proteins 218 bidirectional edges Clustering: 1.33% Clustering: 2.67% Clustering: 4.00% Clustering: 5.33% Clustering: 6.67% Clustering: 8.00% Clustering: 9.33% Clustering: 10.67% Clustering: 14.00% Clustering: 15.33% Clustering: 16.67% Clustering: 18.67% Clustering: 20.67% Clustering: 22.00% Clustering: 23.33% Clustering: 26.00% Clustering: 27.33% Clustering: 28.00% Clustering: 28.67% Clustering: 30.00% Clustering: 31.33% Clustering: 32.67% Clustering: 47.33% Clustering: 51.33% Clustering: 54.00% Clustering: 54.67% Clustering: 57.33% Clustering: 58.67% Clustering: 80.67% Clustering: 83.33% Clustering: 84.67% Clustering: 86.00% Clustering: 88.67% Clustering: 91.33% Clustering: 94.00% Clustering: 100.00% Done Adding singles... -> Output written to test.proteinortho Writing graph... Cleaning edge list... Removed 27 / 218 edges Done. -> Output written to test.proteinortho-graph Clustering by gene-order (POFF mode) Reading test.ffadj-graph 4 species 130 paired proteins 155 bidirectional edges Clustering: 1.54% Clustering: 3.08% Clustering: 4.62% Clustering: 6.15% Clustering: 7.69% Clustering: 9.23% Clustering: 10.77% Clustering: 12.31% Clustering: 13.85% Clustering: 15.38% Clustering: 16.92% Clustering: 18.46% Clustering: 20.00% Clustering: 21.54% Clustering: 23.08% Clustering: 24.62% Clustering: 26.15% Clustering: 27.69% Clustering: 28.46% Clustering: 29.23% Clustering: 47.69% Clustering: 58.46% Clustering: 61.54% Clustering: 67.69% Clustering: 69.23% Clustering: 72.31% Clustering: 73.85% Clustering: 75.38% Clustering: 76.92% Clustering: 78.46% Clustering: 80.00% Clustering: 81.54% Clustering: 83.08% Clustering: 84.62% Clustering: 86.15% Clustering: 87.69% Clustering: 89.23% Clustering: 90.77% Clustering: 92.31% Clustering: 100.00% Done Adding singles... -> Output written to test.poff Writing graph... Cleaning edge list... Removed 3 / 155 edges Done. -> Output written to test.poff-graph All finished. Test okay make[1]: Leaving directory '/<>/proteinortho-5.15+dfsg' fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/proteinortho-5.15+dfsg' dh_auto_install --buildsystem=makefile -- install INSTALLDIR=/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho make -j1 install DESTDIR=/<>/proteinortho-5.15\+dfsg/debian/proteinortho AM_UPDATE_INFO_DIR=no install INSTALLDIR=/<>/proteinortho-5.15\+dfsg/debian/proteinortho/usr/lib/proteinortho make[2]: Entering directory '/<>/proteinortho-5.15+dfsg' install -v proteinortho5.pl proteinortho5_clustering proteinortho5_singletons.pl proteinortho5_clean_edges2.pl ffadj_mcs.py po2tree.pl proteinortho5_tree /<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho 'proteinortho5.pl' -> '/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5.pl' 'proteinortho5_clustering' -> '/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clustering' 'proteinortho5_singletons.pl' -> '/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_singletons.pl' 'proteinortho5_clean_edges2.pl' -> '/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clean_edges2.pl' 'ffadj_mcs.py' -> '/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/ffadj_mcs.py' 'po2tree.pl' -> '/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/po2tree.pl' 'proteinortho5_tree' -> '/<>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_tree' make[2]: 'install' is up to date. make[2]: Leaving directory '/<>/proteinortho-5.15+dfsg' make[1]: Leaving directory '/<>/proteinortho-5.15+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: proteinortho dh_strip debug symbol extraction: packages to act on: proteinortho dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 proteinortho has no unstripped objects, ignoring find: ‘/<>/proteinortho-5.15+dfsg/debian/proteinortho-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/proteinortho-5.15+dfsg/debian/proteinortho-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package proteinortho: unused substitution variable ${perl:Depends} dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform powerpc: proteinortho dh_gencontrol debug symbol wrapper: packages to act on: proteinortho dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/proteinortho-dbgsym, skipping package proteinortho dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 pkgstriptranslations: processing proteinortho (in debian/proteinortho); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/proteinortho/DEBIAN/control, package proteinortho, directory debian/proteinortho pkgstripfiles: Running PNG optimization (using 4 cpus) for package proteinortho ... pkgstripfiles: No PNG files. dpkg-deb: building package 'proteinortho' in '../proteinortho_5.15+dfsg-1_powerpc.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../proteinortho_5.15+dfsg-1_powerpc.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build proteinortho-5.15+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161102-0550 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ proteinortho_5.15+dfsg-1_powerpc.changes: ----------------------------------------- Format: 1.8 Date: Mon, 29 Aug 2016 15:10:00 +0200 Source: proteinortho Binary: proteinortho Architecture: powerpc Version: 5.15+dfsg-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: proteinortho - Detection of (Co-)orthologs in large-scale protein analysis Changes: proteinortho (5.15+dfsg-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 9a00fa42330d91076e6af01294b0d088c6f1e81d 250840 proteinortho_5.15+dfsg-1_powerpc.deb Checksums-Sha256: 4fef0fde896aeee2d325257f4324cd13a4bd90b8193b49a1c1aa21e7ea086702 250840 proteinortho_5.15+dfsg-1_powerpc.deb Files: a8a2b5b027acfa379ef7796655c7038d 250840 science optional proteinortho_5.15+dfsg-1_powerpc.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ proteinortho_5.15+dfsg-1_powerpc.deb ------------------------------------ new debian package, version 2.0. size 250840 bytes: control archive=1524 bytes. 993 bytes, 18 lines control 1827 bytes, 24 lines md5sums Package: proteinortho Version: 5.15+dfsg-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 438 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), ncbi-blast+, python Section: science Priority: optional Homepage: https://www.bioinf.uni-leipzig.de/Software/proteinortho/ Description: Detection of (Co-)orthologs in large-scale protein analysis Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes. drwxr-xr-x root/root 0 2016-08-29 09:10 ./ drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/ drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/bin/ -rwxr-xr-x root/root 52 2016-08-29 09:10 ./usr/bin/proteinortho5 drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/lib/ drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/lib/proteinortho/ -rwxr-xr-x root/root 35339 2016-08-29 09:10 ./usr/lib/proteinortho/ffadj_mcs.py -rwxr-xr-x root/root 4888 2016-08-29 09:10 ./usr/lib/proteinortho/po2tree.pl -rwxr-xr-x root/root 37527 2016-08-29 09:10 ./usr/lib/proteinortho/proteinortho5.pl -rwxr-xr-x root/root 1077 2016-08-29 09:10 ./usr/lib/proteinortho/proteinortho5_clean_edges2.pl -rwxr-xr-x root/root 67136 2016-08-29 09:10 ./usr/lib/proteinortho/proteinortho5_clustering -rwxr-xr-x root/root 1616 2016-08-29 09:10 ./usr/lib/proteinortho/proteinortho5_singletons.pl -rwxr-xr-x root/root 66876 2016-08-29 09:10 ./usr/lib/proteinortho/proteinortho5_tree drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/share/ drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/share/doc/proteinortho/ -rw-r--r-- root/root 263 2016-08-29 09:10 ./usr/share/doc/proteinortho/README.test -rw-r--r-- root/root 381 2016-08-29 09:10 ./usr/share/doc/proteinortho/changelog.Debian.gz -rw-r--r-- root/root 1177 2016-08-29 09:10 ./usr/share/doc/proteinortho/copyright drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/share/doc/proteinortho/examples/ -rw-r--r-- root/root 77324 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/C.faa.gz -rw-r--r-- root/root 1867 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/C.gff.gz -rw-r--r-- root/root 84291 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/E.faa.gz -rw-r--r-- root/root 1880 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/E.gff.gz -rw-r--r-- root/root 14428 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/L.faa.gz -rw-r--r-- root/root 2376 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/L.gff -rw-r--r-- root/root 14230 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/M.faa.gz -rw-r--r-- root/root 2317 2014-07-26 09:44 ./usr/share/doc/proteinortho/examples/M.gff -rwxr-xr-x root/root 238 2016-04-22 04:52 ./usr/share/doc/proteinortho/examples/chk_test.pl -rw-r--r-- root/root 393 2016-08-29 09:10 ./usr/share/doc/proteinortho/run-unit-test drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/share/doc/proteinortho/tools/ -rw-r--r-- root/root 1209 2016-04-22 04:52 ./usr/share/doc/proteinortho/tools/comp_bla.pl -rw-r--r-- root/root 2638 2016-04-22 04:52 ./usr/share/doc/proteinortho/tools/grab_proteins.pl drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/share/man/ drwxr-xr-x root/root 0 2016-08-29 09:10 ./usr/share/man/man1/ -rw-r--r-- root/root 1381 2016-08-29 09:10 ./usr/share/man/man1/proteinortho5.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: powerpc Build-Space: 2332 Build-Time: 36 Distribution: zesty-proposed Host Architecture: powerpc Install-Time: 103 Job: proteinortho_5.15+dfsg-1.dsc Machine Architecture: powerpc Package: proteinortho Package-Time: 140 Source-Version: 5.15+dfsg-1 Space: 2332 Status: successful Version: 5.15+dfsg-1 -------------------------------------------------------------------------------- Finished at 20161102-0550 Build needed 00:02:20, 2332k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11123062'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11123062/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11123062'] Unmounting chroot for build PACKAGEBUILD-11123062... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11123062'] Removing build PACKAGEBUILD-11123062