https://launchpad.net/ubuntu/+source/pytables/3.6.1-2build2/+build/19298001 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-028 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:45:10 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 May 13:12:31 ntpdate[1922]: adjust time server 10.211.37.1 offset -0.005263 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19298001 --image-type chroot /home/buildd/filecache-default/7f6882774d93a6ce12d34cd2f4e4b83a707bcc6e Creating target for build PACKAGEBUILD-19298001 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19298001 Starting target for build PACKAGEBUILD-19298001 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19298001 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19298001 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19298001 Updating target for build PACKAGEBUILD-19298001 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 Packages [971 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe amd64 Packages [8728 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5175 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 Packages [82.4 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [37.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 Packages [487 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [295 kB] Fetched 16.8 MB in 4s (4365 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp-9 dash debconf e2fsprogs g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapparmor1 libapt-pkg6.0 libasan5 libatomic1 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 liblsan0 libncurses6 libncursesw6 libperl5.30 libprocps8 libquadmath0 libseccomp2 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 linux-libc-dev logsave make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 61 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 50.3 MB of archives. After this operation, 101 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcrypt-dev amd64 1:4.4.15-1ubuntu1 [104 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcrypt1 amd64 1:4.4.15-1ubuntu1 [78.2 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main amd64 base-files amd64 11ubuntu7 [60.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main amd64 libperl5.30 amd64 5.30.0-10 [3939 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 perl amd64 5.30.0-10 [224 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main amd64 perl-base amd64 5.30.0-10 [1511 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main amd64 perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main amd64 debconf all 1.5.74 [121 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main amd64 dash amd64 0.5.10.2-7 [86.3 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-bin amd64 6.2-1 [172 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-base all 6.2-1 [18.7 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main amd64 sysvinit-utils amd64 2.96-3ubuntu1 [20.6 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libubsan1 amd64 10.1.0-1ubuntu1 [136 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libtsan0 amd64 10.1.0-1ubuntu1 [320 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libquadmath0 amd64 10.1.0-1ubuntu1 [146 kB] Get:16 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 liblsan0 amd64 10.1.0-1ubuntu1 [144 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libitm1 amd64 10.1.0-1ubuntu1 [26.3 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgomp1 amd64 10.1.0-1ubuntu1 [101 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 gcc-10-base amd64 10.1.0-1ubuntu1 [19.3 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgcc-s1 amd64 10.1.0-1ubuntu1 [41.5 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcc1-0 amd64 10.1.0-1ubuntu1 [41.2 kB] Get:22 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libatomic1 amd64 10.1.0-1ubuntu1 [9288 B] Get:23 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libstdc++6 amd64 10.1.0-1ubuntu1 [503 kB] Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 systemd-sysv amd64 245.5-2ubuntu2 [10.3 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 systemd-timesyncd amd64 245.5-2ubuntu2 [28.0 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main amd64 libacl1 amd64 2.2.53-8 [18.9 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libapparmor1 amd64 2.13.3-7ubuntu6 [34.3 kB] Get:28 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcap2 amd64 1:2.34-1 [17.9 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main amd64 libcryptsetup12 amd64 2:2.3.1-1ubuntu1 [192 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main amd64 libidn2-0 amd64 2.3.0-1 [52.6 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main amd64 libseccomp2 amd64 2.4.3-1ubuntu2 [42.0 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 systemd amd64 245.5-2ubuntu2 [3797 kB] Get:33 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsystemd0 amd64 245.5-2ubuntu2 [271 kB] Get:34 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libudev1 amd64 245.5-2ubuntu2 [78.4 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main amd64 libapt-pkg6.0 amd64 2.1.1 [839 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main amd64 gpgv amd64 2.2.20-1ubuntu1 [200 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main amd64 apt amd64 2.1.1 [1289 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main amd64 logsave amd64 1.45.6-1ubuntu1 [10.3 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main amd64 libext2fs2 amd64 1.45.6-1ubuntu1 [184 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main amd64 e2fsprogs amd64 1.45.6-1ubuntu1 [529 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main amd64 libncurses6 amd64 6.2-1 [101 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main amd64 libncursesw6 amd64 6.2-1 [132 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main amd64 libtinfo6 amd64 6.2-1 [87.1 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main amd64 libcom-err2 amd64 1.45.6-1ubuntu1 [9664 B] Get:45 http://ftpmaster.internal/ubuntu groovy/main amd64 libprocps8 amd64 2:3.3.16-4ubuntu1 [32.9 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main amd64 libss2 amd64 1.45.6-1ubuntu1 [11.3 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main amd64 procps amd64 2:3.3.16-4ubuntu1 [232 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main amd64 libsqlite3-0 amd64 3.31.1-5 [548 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main amd64 tzdata all 2020a-0ubuntu1 [293 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main amd64 libasan5 amd64 9.3.0-12ubuntu1 [395 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main amd64 g++-9 amd64 9.3.0-12ubuntu1 [8404 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-9 amd64 9.3.0-12ubuntu1 [8239 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main amd64 libstdc++-9-dev amd64 9.3.0-12ubuntu1 [1713 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main amd64 libgcc-9-dev amd64 9.3.0-12ubuntu1 [2359 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main amd64 cpp-9 amd64 9.3.0-12ubuntu1 [7489 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-9-base amd64 9.3.0-12ubuntu1 [19.5 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main amd64 gpg amd64 2.2.20-1ubuntu1 [485 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main amd64 gpgconf amd64 2.2.20-1ubuntu1 [124 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main amd64 gpg-agent amd64 2.2.20-1ubuntu1 [232 kB] Get:60 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 linux-libc-dev amd64 5.4.0-29.33 [1098 kB] Get:61 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 make amd64 4.2.1-2 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.3 MB in 4s (11.3 MB/s) (Reading database ... 12816 files and directories currently installed.) 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Setting up libcap2:amd64 (1:2.34-1) ... Setting up tzdata (2020a-0ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed May 13 13:13:19 UTC 2020. Universal Time is now: Wed May 13 13:13:19 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.2.1-2) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libquadmath0:amd64 (10.1.0-1ubuntu1) ... Setting up libatomic1:amd64 (10.1.0-1ubuntu1) ... Setting up libss2:amd64 (1.45.6-1ubuntu1) ... Setting up libncursesw6:amd64 (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libubsan1:amd64 (10.1.0-1ubuntu1) ... Setting up libcrypt-dev:amd64 (1:4.4.15-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:amd64 (5.30.0-10) ... Setting up libcryptsetup12:amd64 (2:2.3.1-1ubuntu1) ... Setting up libcc1-0:amd64 (10.1.0-1ubuntu1) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up liblsan0:amd64 (10.1.0-1ubuntu1) ... 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Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19298001 amd64 groovy-proposed -c chroot:build-PACKAGEBUILD-19298001 --arch=amd64 --dist=groovy-proposed --nolog -A pytables_3.6.1-2build2.dsc Initiating build PACKAGEBUILD-19298001 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:45:10 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-028.buildd +==============================================================================+ | pytables 3.6.1-2build2 (amd64) 13 May 2020 13:13 | +==============================================================================+ Package: pytables Version: 3.6.1-2build2 Source Version: 3.6.1-2build2 Distribution: groovy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/pytables-WZtO7i/pytables-3.6.1' with '<>' I: NOTICE: Log filtering will replace 'build/pytables-WZtO7i' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19298001/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- pytables_3.6.1-2build2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-WwIiab/apt_archive/sbuild-build-depends-core-dummy.deb'. 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Get:1 copy:/<>/resolver-WwIiab/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (40.2 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: cython3, cython3-dbg, debhelper-compat (= 12), dh-python, latexmk, libblosc-dev, libbz2-dev, libhdf5-dev, libjs-jquery-cookie, libjs-mathjax, liblz4-dev, liblzo2-dev, libsnappy-dev, libzstd-dev, locales, python3-mock, python3-all-dev, python3-all-dbg, python3-ipython, python3-numexpr, python3-numexpr-dbg, python3-numpy, python3-numpy-dbg, python3-numpydoc, python3-sphinx, python3-sphinx-rtd-theme, python3-setuptools, python3-six, texlive-fonts-recommended, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, zlib1g-dev Filtered Build-Depends: cython3, cython3-dbg, debhelper-compat (= 12), dh-python, latexmk, libblosc-dev, libbz2-dev, libhdf5-dev, libjs-jquery-cookie, libjs-mathjax, liblz4-dev, liblzo2-dev, libsnappy-dev, libzstd-dev, locales, python3-mock, python3-all-dev, python3-all-dbg, python3-ipython, python3-numexpr, python3-numexpr-dbg, python3-numpy, python3-numpy-dbg, python3-numpydoc, python3-sphinx, python3-sphinx-rtd-theme, python3-setuptools, python3-six, texlive-fonts-recommended, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-pytables-dummy' in '/<>/resolver-FJNN8q/apt_archive/sbuild-build-depends-pytables-dummy.deb'. Ign:1 copy:/<>/resolver-FJNN8q/apt_archive ./ InRelease Get:2 copy:/<>/resolver-FJNN8q/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-FJNN8q/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-FJNN8q/apt_archive ./ Sources [410 B] Get:5 copy:/<>/resolver-FJNN8q/apt_archive ./ Packages [744 B] Fetched 3273 B in 0s (87.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install pytables build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 cython3-dbg debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-lmodern fonts-mathjax gettext gettext-base groff-base hdf5-helpers intltool-debian latexmk libaec-dev libaec0 libapache-pom-java libarchive-zip-perl libblas3 libblosc-dev libblosc1 libbsd0 libbz2-dev libcairo2 libcommons-logging-java libcommons-parent-java libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice6 libicu66 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-cookie libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblz4-dev liblzo2-2 liblzo2-dev libmagic-mgc libmagic1 libmpdec2 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-all-dbg libpython3-all-dev libpython3-dbg libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dbg libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsm6 libsnappy-dev libsnappy1v5 libsub-override-perl libsynctex2 libsz2 libteckit0 libtexlua53 libtexluajit2 libtool libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzstd-dev libzzip-0-13 locales m4 man-db mime-support node-jquery po-debconf preview-latex-style python-babel-localedata python3 python3-alabaster python3-all python3-all-dbg python3-all-dev python3-babel python3-backcall python3-certifi python3-chardet python3-dbg python3-decorator python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-ipython python3-ipython-genutils python3-jedi python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-mock python3-numexpr python3-numexpr-dbg python3-numpy python3-numpy-dbg python3-numpydoc python3-packaging python3-parso python3-pbr python3-pexpect python3-pickleshare python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-roman python3-setuptools python3-six python3-sphinx python3-sphinx-rtd-theme python3-traitlets python3-tz python3-urllib3 python3-wcwidth python3.8 python3.8-dbg python3.8-dev python3.8-minimal sgml-base sphinx-common sphinx-rtd-theme-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff ghostscript libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java libhdf5-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french python-ipython-doc python-jinja2-doc python-mock-doc gfortran python-numpy-doc python3-pytest python-pexpect-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc dvipng fonts-freefont-otf imagemagick-6.q16 python3-stemmer sphinx-doc python3.8-venv python3.8-doc python3-gdbm-dbg python3-tk-dbg binfmt-support sgml-base-doc gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex default-jre-headless Recommended packages: curl | wget | lynx xpdf | pdf-viewer gv | postscript-viewer bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python3-pil gdb lmodern dvisvgm tex-gyre tipa ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 cython3-dbg debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-lmodern fonts-mathjax gettext gettext-base groff-base hdf5-helpers intltool-debian latexmk libaec-dev libaec0 libapache-pom-java libarchive-zip-perl libblas3 libblosc-dev libblosc1 libbsd0 libbz2-dev libcairo2 libcommons-logging-java libcommons-parent-java libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice6 libicu66 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-cookie libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblz4-dev liblzo2-2 liblzo2-dev libmagic-mgc libmagic1 libmpdec2 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-all-dbg libpython3-all-dev libpython3-dbg libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dbg libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsm6 libsnappy-dev libsnappy1v5 libsub-override-perl libsynctex2 libsz2 libteckit0 libtexlua53 libtexluajit2 libtool libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzstd-dev libzzip-0-13 locales m4 man-db mime-support node-jquery po-debconf preview-latex-style python-babel-localedata python3 python3-alabaster python3-all python3-all-dbg python3-all-dev python3-babel python3-backcall python3-certifi python3-chardet python3-dbg python3-decorator python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-ipython python3-ipython-genutils python3-jedi python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-mock python3-numexpr python3-numexpr-dbg python3-numpy python3-numpy-dbg python3-numpydoc python3-packaging python3-parso python3-pbr python3-pexpect python3-pickleshare python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-roman python3-setuptools python3-six python3-sphinx python3-sphinx-rtd-theme python3-traitlets python3-tz python3-urllib3 python3-wcwidth python3.8 python3.8-dbg python3.8-dev python3.8-minimal sbuild-build-depends-pytables-dummy sgml-base sphinx-common sphinx-rtd-theme-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xml-core zlib1g-dev 0 upgraded, 204 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu groovy/universe amd64 tex-common all 6.14 [32.9 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main amd64 libmagic-mgc amd64 1:5.38-4 [218 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main amd64 libmagic1 amd64 1:5.38-4 [75.9 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main amd64 file amd64 1:5.38-4 [23.3 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main amd64 libelf1 amd64 0.176-1.1build1 [44.0 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main amd64 libglib2.0-0 amd64 2.64.2-1 [1287 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main amd64 libicu66 amd64 66.1-2ubuntu2 [8520 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main amd64 libxml2 amd64 2.9.10+dfsg-5 [640 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main amd64 locales all 2.31-0ubuntu9 [3870 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-pkg-resources all 46.1.3-1 [127 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main amd64 gettext-base amd64 0.19.8.1-10build1 [50.2 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B] Get:33 http://ftpmaster.internal/ubuntu groovy/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main amd64 libxcb1 amd64 1.14-2 [44.7 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main amd64 libx11-data all 2:1.6.9-2ubuntu1 [113 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main amd64 libx11-6 amd64 2:1.6.9-2ubuntu1 [573 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main amd64 autoconf all 2.69-11.1 [321 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main amd64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main amd64 autopoint all 0.19.8.1-10build1 [412 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/universe amd64 cython3 amd64 0.29.14-0.1ubuntu3 [1474 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main amd64 libtool all 2.4.6-14 [161 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main amd64 dh-autoreconf all 19 [16.1 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main amd64 libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:50 http://ftpmaster.internal/ubuntu groovy/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main amd64 dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:52 http://ftpmaster.internal/ubuntu groovy/main amd64 dwz amd64 0.13-5 [151 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main amd64 po-debconf all 1.0.21 [233 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main amd64 debhelper all 13ubuntu1 [877 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-lib2to3 all 3.8.2-1ubuntu1 [74.1 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-distutils all 3.8.2-1ubuntu1 [140 kB] Get:60 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 dh-python all 4.20200315 [85.8 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main amd64 xml-core all 0.18+nmu1 [21.6 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main amd64 docutils-common all 0.16+dfsg-2 [116 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main amd64 fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [514 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/universe amd64 fonts-lmodern all 2.004.5-6 [4532 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/universe amd64 fonts-mathjax all 2.7.4+dfsg-1 [2208 kB] Get:68 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 hdf5-helpers amd64 1.10.6+repack-2 [13.7 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:71 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libkpathsea6 amd64 2020.20200327.54578-4 [57.9 kB] Get:72 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libptexenc1 amd64 2020.20200327.54578-4 [35.5 kB] Get:73 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsynctex2 amd64 2020.20200327.54578-4 [55.3 kB] Get:74 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libtexlua53 amd64 2020.20200327.54578-4 [105 kB] Get:75 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libtexluajit2 amd64 2020.20200327.54578-4 [236 kB] Get:76 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 t1utils amd64 1.41-4 [56.0 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main amd64 libfreetype6 amd64 2.10.1-2 [341 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main amd64 libfontconfig1 amd64 2.13.1-2ubuntu3 [114 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main amd64 libpixman-1-0 amd64 0.38.4-0ubuntu1 [227 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main amd64 libxcb-render0 amd64 1.14-2 [14.8 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main amd64 libxcb-shm0 amd64 1.14-2 [5584 B] Get:82 http://ftpmaster.internal/ubuntu groovy/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main amd64 libcairo2 amd64 1.16.0-4ubuntu1 [583 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main amd64 libgraphite2-3 amd64 1.3.14-1 [73.7 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main amd64 libharfbuzz0b amd64 2.6.4-1ubuntu4 [391 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/universe amd64 libteckit0 amd64 2.5.8+ds2-5ubuntu2 [320 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main amd64 x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main amd64 libice6 amd64 2:1.0.10-0ubuntu1 [41.0 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main amd64 libxmu6 amd64 2:1.1.3-0ubuntu1 [45.8 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main amd64 libxi6 amd64 2:1.7.10-0ubuntu1 [29.9 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/universe amd64 libzzip-0-13 amd64 0.13.62-3.2ubuntu1 [26.2 kB] Get:96 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-binaries amd64 2020.20200327.54578-4 [9697 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main amd64 xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:98 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-base all 2020.20200417-1 [21.4 MB] Get:99 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-latex-base all 2020.20200417-1 [1028 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/universe amd64 latexmk all 1:4.69a-0.1 [380 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/universe amd64 libapache-pom-java all 18-1 [4720 B] Get:103 http://ftpmaster.internal/ubuntu groovy/main amd64 libblas3 amd64 3.9.0-2 [141 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/universe amd64 libblosc1 amd64 1.17.1+ds1-1 [32.2 kB] Get:106 http://ftpmaster.internal/ubuntu groovy/universe amd64 libblosc-dev amd64 1.17.1+ds1-1 [38.7 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/main amd64 libbz2-dev amd64 1.0.8-2 [30.2 kB] Get:108 http://ftpmaster.internal/ubuntu groovy/universe amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/universe amd64 libcommons-logging-java all 1.2-2 [60.3 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/main amd64 libexpat1-dev amd64 2.2.9-1build1 [116 kB] Get:111 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgfortran5 amd64 10.1.0-1ubuntu1 [734 kB] Get:112 http://ftpmaster.internal/ubuntu groovy/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] Get:113 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libhdf5-103-1 amd64 1.10.6+repack-2 [1155 kB] Get:114 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-2 [117 kB] Get:115 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libhdf5-fortran-102 amd64 1.10.6+repack-2 [74.1 kB] Get:116 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libhdf5-hl-100 amd64 1.10.6+repack-2 [54.0 kB] Get:117 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-2 [27.8 kB] Get:118 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-2 [9976 B] Get:119 http://ftpmaster.internal/ubuntu groovy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1 [156 kB] Get:120 http://ftpmaster.internal/ubuntu groovy/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu1 [118 kB] Get:121 http://ftpmaster.internal/ubuntu groovy/main amd64 libjpeg-turbo8-dev amd64 2.0.3-0ubuntu1 [238 kB] Get:122 http://ftpmaster.internal/ubuntu groovy/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:123 http://ftpmaster.internal/ubuntu groovy/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:124 http://ftpmaster.internal/ubuntu groovy/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:125 http://ftpmaster.internal/ubuntu groovy/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] Get:126 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libhdf5-dev amd64 1.10.6+repack-2 [2427 kB] Get:127 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 node-jquery all 3.5.1+dfsg-3 [309 kB] Get:128 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libjs-jquery all 3.5.1+dfsg-3 [2308 B] Get:129 http://ftpmaster.internal/ubuntu groovy/universe amd64 libjs-jquery-cookie all 12-1.1 [6904 B] Get:130 http://ftpmaster.internal/ubuntu groovy/main amd64 libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:131 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libjs-sphinxdoc all 2.4.3-2ubuntu1 [110 kB] Get:132 http://ftpmaster.internal/ubuntu groovy/main amd64 liblapack3 amd64 3.9.0-2 [2156 kB] Get:133 http://ftpmaster.internal/ubuntu groovy/main amd64 liblzo2-2 amd64 2.10-2 [50.8 kB] Get:134 http://ftpmaster.internal/ubuntu groovy/main amd64 liblzo2-dev amd64 2.10-2 [91.3 kB] Get:135 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3.8 amd64 3.8.2-1ubuntu1.1 [1620 kB] Get:136 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3.8-dev amd64 3.8.2-1ubuntu1.1 [3938 kB] Get:137 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3-dev amd64 3.8.2-0ubuntu2 [7236 B] Get:138 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3-all-dev amd64 3.8.2-0ubuntu2 [1116 B] Get:139 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3.8-dbg amd64 3.8.2-1ubuntu1.1 [13.4 MB] Get:140 http://ftpmaster.internal/ubuntu groovy/main amd64 libzstd-dev amd64 1.4.4+dfsg-3 [287 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/universe amd64 preview-latex-style all 11.91-2ubuntu2 [184 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/main amd64 python-babel-localedata all 2.8.0+dfsg.1-3 [4984 kB] Get:143 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-all amd64 3.8.2-0ubuntu2 [1104 B] Get:144 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3-dbg amd64 3.8.2-0ubuntu2 [7220 B] Get:145 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3-all-dbg amd64 3.8.2-0ubuntu2 [1112 B] Get:146 http://ftpmaster.internal/ubuntu groovy/main amd64 python3.8-dbg amd64 3.8.2-1ubuntu1.1 [19.4 MB] Get:147 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-dbg amd64 3.8.2-0ubuntu2 [1280 B] Get:148 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-all-dbg amd64 3.8.2-0ubuntu2 [1116 B] Get:149 http://ftpmaster.internal/ubuntu groovy/main amd64 python3.8-dev amd64 3.8.2-1ubuntu1.1 [515 kB] Get:150 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-dev amd64 3.8.2-0ubuntu2 [1212 B] Get:151 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-all-dev amd64 3.8.2-0ubuntu2 [1112 B] Get:152 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-tz all 2019.3-2 [24.5 kB] Get:153 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-babel all 2.8.0+dfsg.1-3 [84.9 kB] Get:154 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-backcall all 0.1.0-2 [11.2 kB] Get:155 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-certifi all 2020.4.5.1-1 [151 kB] Get:156 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-chardet all 3.0.4-7 [80.2 kB] Get:157 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:158 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-roman all 2.0.0-4 [8832 B] Get:159 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-docutils all 0.16+dfsg-2 [368 kB] Get:160 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-idna all 2.9-1 [35.0 kB] Get:161 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-imagesize all 1.2.0-2 [5868 B] Get:162 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-parso all 0.7.0-1 [64.5 kB] Get:163 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 python3-jedi all 0.15.2-1ubuntu1 [502 kB] Get:164 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-ptyprocess all 0.6.0-1ubuntu1 [13.3 kB] Get:165 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-pexpect all 4.6.0-3 [44.5 kB] Get:166 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-pickleshare all 0.7.5-2 [7560 B] Get:167 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-wcwidth all 0.1.9+dfsg1-1 [17.7 kB] Get:168 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-prompt-toolkit all 3.0.5-2 [228 kB] Get:169 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-pygments all 2.3.1+dfsg-3 [581 kB] Get:170 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-ipython-genutils all 0.2.0-3 [21.3 kB] Get:171 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-six all 1.14.0-3 [12.1 kB] Get:172 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] Get:173 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-ipython all 7.14.0-1 [496 kB] Get:174 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-markupsafe amd64 1.1.1-1 [13.9 kB] Get:175 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 python3-jinja2 all 2.11.1-1 [101 kB] Get:176 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 python3-numpy amd64 1:1.18.4-1 [2779 kB] Get:177 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-numexpr amd64 2.7.1-1build1 [133 kB] Get:178 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 sphinx-common all 2.4.3-2ubuntu1 [550 kB] Get:179 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get:180 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-pyparsing all 2.4.7-1 [61.4 kB] Get:181 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-packaging all 20.3-1.2 [26.9 kB] Get:182 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-urllib3 all 1.25.9-1 [88.8 kB] Get:183 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 python3-requests all 2.23.0+dfsg-2 [50.9 kB] Get:184 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 python3-sphinx all 2.4.3-2ubuntu1 [502 kB] Get:185 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-numpydoc all 0.7.0-2 [18.6 kB] Get:186 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-setuptools all 46.1.3-1 [325 kB] Get:187 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-pbr all 5.4.5-0ubuntu1 [64.0 kB] Get:188 http://ftpmaster.internal/ubuntu groovy/main amd64 libjs-modernizr all 2.6.2+ds1-3ubuntu1 [46.2 kB] Get:189 http://ftpmaster.internal/ubuntu groovy/main amd64 sphinx-rtd-theme-common all 0.4.3+dfsg-3 [990 kB] Get:190 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-sphinx-rtd-theme all 0.4.3+dfsg-3 [5288 B] Get:191 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-fonts-recommended all 2020.20200417-1 [4973 kB] Get:192 http://ftpmaster.internal/ubuntu groovy/universe amd64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:193 http://ftpmaster.internal/ubuntu groovy/universe amd64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:194 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-latex-recommended all 2020.20200417-1 [15.7 MB] Get:195 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-pictures all 2020.20200417-1 [4487 kB] Get:196 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-latex-extra all 2020.20200417-1 [12.5 MB] Get:197 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 texlive-plain-generic all 2020.20200417-1 [25.0 MB] Get:198 http://ftpmaster.internal/ubuntu groovy/universe amd64 cython3-dbg amd64 0.29.14-0.1ubuntu3 [11.4 MB] Get:199 http://ftpmaster.internal/ubuntu groovy/universe amd64 libjs-mathjax all 2.7.4+dfsg-1 [5654 kB] Get:200 http://ftpmaster.internal/ubuntu groovy/main amd64 liblz4-dev amd64 1.9.2-2 [74.8 kB] Get:201 http://ftpmaster.internal/ubuntu groovy/main amd64 libsnappy-dev amd64 1.1.8-1build1 [29.0 kB] Get:202 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 python3-mock all 3.0.5-2 [25.6 kB] Get:203 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 python3-numpy-dbg amd64 1:1.18.4-1 [25.7 MB] Get:204 http://ftpmaster.internal/ubuntu groovy/universe amd64 python3-numexpr-dbg amd64 2.7.1-1build1 [554 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 249 MB in 12s (21.1 MB/s) Selecting previously unselected package libpython3.8-minimal:amd64. (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2-1ubuntu1.1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.2-1ubuntu1.1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.9-1build1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2-1ubuntu1.1_amd64.deb ... Unpacking python3.8-minimal (3.8.2-1ubuntu1.1) ... Setting up libpython3.8-minimal:amd64 (3.8.2-1ubuntu1.1) ... Setting up libexpat1:amd64 (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.2-1ubuntu1.1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13107 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-0ubuntu2_amd64.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... 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Setting up libsnappy-dev:amd64 (1.1.8-1build1) ... Setting up libcommons-parent-java (43-1) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-4) ... Setting up libpython3-dbg:amd64 (3.8.2-0ubuntu2) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up libpython3-all-dbg:amd64 (3.8.2-0ubuntu2) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up python3-markupsafe (1.1.1-1) ... Setting up python3-tz (2019.3-2) ... Setting up python3-six (1.14.0-3) ... Setting up tex-common (6.14) ... update-language: texlive-base not installed and configured, doing nothing! Setting up python3-roman (2.0.0-4) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-jinja2 (2.11.1-1) ... Setting up libptexenc1:amd64 (2020.20200327.54578-4) ... Setting up python3-wcwidth (0.1.9+dfsg1-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.4.5.1-1) ... Setting up libpython3.8:amd64 (3.8.2-1ubuntu1.1) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up python3-idna (2.9-1) ... Setting up cython3 (0.29.14-0.1ubuntu3) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up python3-pickleshare (0.7.5-2) ... Setting up autoconf (2.69-11.1) ... Setting up cython3-dbg (0.29.14-0.1ubuntu3) ... Setting up python3-urllib3 (1.25.9-1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up xml-core (0.18+nmu1) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.6+repack-2) ... Setting up libx11-6:amd64 (2:1.6.9-2ubuntu1) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Setting up libjs-jquery (3.5.1+dfsg-3) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up python3-lib2to3 (3.8.2-1ubuntu1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-ptyprocess (0.6.0-1ubuntu1) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-2) ... Setting up python3-pkg-resources (46.1.3-1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-prompt-toolkit (3.0.5-2) ... Setting up python3-distutils (3.8.2-1ubuntu1) ... Setting up dh-python (4.20200315) ... Setting up python3.8-dbg (3.8.2-1ubuntu1.1) ... Setting up libjs-jquery-cookie (12-1.1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up python3-setuptools (46.1.3-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up python3-backcall (0.1.0-2) ... Setting up python3-parso (0.7.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-3) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pbr (5.4.5-0ubuntu1) ... update-alternatives: using /usr/bin/python3-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up python3-ipython-genutils (0.2.0-3) ... Setting up python3-alabaster (0.7.8-1.1) ... Setting up preview-latex-style (11.91-2ubuntu2) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up python3-all (3.8.2-0ubuntu2) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-mock (3.0.5-2) ... Setting up python3-pygments (2.3.1+dfsg-3) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-2) ... Setting up python3-packaging (20.3-1.2) ... Setting up python3-chardet (3.0.4-7) ... Setting up libpython3.8-dev:amd64 (3.8.2-1ubuntu1.1) ... Setting up python3-pexpect (4.6.0-3) ... Setting up python3-requests (2.23.0+dfsg-2) ... Setting up libhdf5-fortran-102:amd64 (1.10.6+repack-2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up python3-numpy (1:1.18.4-1) ... Setting up libjs-sphinxdoc (2.4.3-2ubuntu1) ... Setting up python3.8-dev (3.8.2-1ubuntu1.1) ... Setting up python3-traitlets (4.3.3-3) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.6+repack-2) ... Setting up python3-dbg (3.8.2-0ubuntu2) ... Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ... Setting up libpython3-dev:amd64 (3.8.2-0ubuntu2) ... Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ... Setting up python3-jedi (0.15.2-1ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up python3-numpy-dbg:amd64 (1:1.18.4-1) ... Setting up libpython3-all-dev:amd64 (3.8.2-0ubuntu2) ... Setting up python3-ipython (7.14.0-1) ... Setting up sphinx-common (2.4.3-2ubuntu1) ... Setting up python3-dev (3.8.2-0ubuntu2) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-numexpr (2.7.1-1build1) ... Setting up texlive-binaries (2020.20200327.54578-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-all-dbg (3.8.2-0ubuntu2) ... Setting up texlive-base (2020.20200417-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up python3-all-dev (3.8.2-0ubuntu2) ... Setting up python3-numexpr-dbg (2.7.1-1build1) ... Setting up texlive-plain-generic (2020.20200417-1) ... Setting up texlive-latex-base (2020.20200417-1) ... Setting up texlive-latex-recommended (2020.20200417-1) ... Setting up texlive-pictures (2020.20200417-1) ... Setting up texlive-fonts-recommended (2020.20200417-1) ... Setting up latexmk (1:4.69a-0.1) ... Setting up texlive-latex-extra (2020.20200417-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Processing triggers for systemd (245.5-2ubuntu2) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-2) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (2.4.3-2ubuntu1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python3-sphinx-rtd-theme (0.4.3+dfsg-3) ... Setting up python3-numpydoc (0.7.0-2) ... Setting up sbuild-build-depends-pytables-dummy (0.invalid.0) ... Processing triggers for tex-common (6.14) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-178-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-12ubuntu1 gcc-9_9.3.0-12ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-12ubuntu1 libstdc++6_10.1.0-1ubuntu1 linux-libc-dev_5.4.0-29.33 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-x86-64-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 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libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed5_3.5.1+really3.5.1-2 libice6_2:1.0.10-0ubuntu1 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10.1.0-1ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg-turbo8-dev_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjs-jquery_3.5.1+dfsg-3 libjs-jquery-cookie_12-1.1 libjs-mathjax_2.7.4+dfsg-1 libjs-modernizr_2.6.2+ds1-3ubuntu1 libjs-sphinxdoc_2.4.3-2ubuntu1 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 libkpathsea6_2020.20200327.54578-4 liblapack3_3.9.0-2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.1.0-1ubuntu1 liblz4-1_1.9.2-2 liblz4-dev_1.9.2-2 liblzma5_5.2.4-1 liblzo2-2_2.10-2 liblzo2-dev_2.10-2 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 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libsmartcols1_2.34-0.1ubuntu9 libsnappy-dev_1.1.8-1build1 libsnappy1v5_1.1.8-1build1 libsqlite3-0_3.31.1-5 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-12ubuntu1 libstdc++6_10.1.0-1ubuntu1 libsub-override-perl_0.09-2 libsynctex2_2020.20200327.54578-4 libsystemd0_245.5-2ubuntu2 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libteckit0_2.5.8+ds2-5ubuntu2 libtexlua53_2020.20200327.54578-4 libtexluajit2_2020.20200327.54578-4 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-1ubuntu1 libubsan1_10.1.0-1ubuntu1 libuchardet0_0.0.6-3build1 libudev1_245.5-2ubuntu2 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libx11-6_2:1.6.9-2ubuntu1 libx11-data_2:1.6.9-2ubuntu1 libxau6_1:1.0.9-0ubuntu1 libxaw7_2:1.0.13-1 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxi6_2:1.7.10-0ubuntu1 libxml2_2.9.10+dfsg-5 libxmu6_2:1.1.3-0ubuntu1 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzstd-dev_1.4.4+dfsg-3 libzstd1_1.4.4+dfsg-3 libzzip-0-13_0.13.62-3.2ubuntu1 linux-libc-dev_5.4.0-29.33 locales_2.31-0ubuntu9 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 node-jquery_3.5.1+dfsg-3 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 preview-latex-style_11.91-2ubuntu2 procps_2:3.3.16-4ubuntu1 python-babel-localedata_2.8.0+dfsg.1-3 python3_3.8.2-0ubuntu2 python3-alabaster_0.7.8-1.1 python3-all_3.8.2-0ubuntu2 python3-all-dbg_3.8.2-0ubuntu2 python3-all-dev_3.8.2-0ubuntu2 python3-babel_2.8.0+dfsg.1-3 python3-backcall_0.1.0-2 python3-certifi_2020.4.5.1-1 python3-chardet_3.0.4-7 python3-dbg_3.8.2-0ubuntu2 python3-decorator_4.4.2-0ubuntu1 python3-dev_3.8.2-0ubuntu2 python3-distutils_3.8.2-1ubuntu1 python3-docutils_0.16+dfsg-2 python3-idna_2.9-1 python3-imagesize_1.2.0-2 python3-ipython_7.14.0-1 python3-ipython-genutils_0.2.0-3 python3-jedi_0.15.2-1ubuntu1 python3-jinja2_2.11.1-1 python3-lib2to3_3.8.2-1ubuntu1 python3-markupsafe_1.1.1-1 python3-minimal_3.8.2-0ubuntu2 python3-mock_3.0.5-2 python3-numexpr_2.7.1-1build1 python3-numexpr-dbg_2.7.1-1build1 python3-numpy_1:1.18.4-1 python3-numpy-dbg_1:1.18.4-1 python3-numpydoc_0.7.0-2 python3-packaging_20.3-1.2 python3-parso_0.7.0-1 python3-pbr_5.4.5-0ubuntu1 python3-pexpect_4.6.0-3 python3-pickleshare_0.7.5-2 python3-pkg-resources_46.1.3-1 python3-prompt-toolkit_3.0.5-2 python3-ptyprocess_0.6.0-1ubuntu1 python3-pygments_2.3.1+dfsg-3 python3-pyparsing_2.4.7-1 python3-requests_2.23.0+dfsg-2 python3-roman_2.0.0-4 python3-setuptools_46.1.3-1 python3-six_1.14.0-3 python3-sphinx_2.4.3-2ubuntu1 python3-sphinx-rtd-theme_0.4.3+dfsg-3 python3-traitlets_4.3.3-3 python3-tz_2019.3-2 python3-urllib3_1.25.9-1 python3-wcwidth_0.1.9+dfsg1-1 python3.8_3.8.2-1ubuntu1.1 python3.8-dbg_3.8.2-1ubuntu1.1 python3.8-dev_3.8.2-1ubuntu1.1 python3.8-minimal_3.8.2-1ubuntu1.1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pytables-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.30 sphinx-common_2.4.3-2ubuntu1 sphinx-rtd-theme-common_0.4.3+dfsg-3 systemd_245.5-2ubuntu2 systemd-sysv_245.5-2ubuntu2 systemd-timesyncd_245.5-2ubuntu2 sysvinit-utils_2.96-3ubuntu1 t1utils_1.41-4 tar_1.30+dfsg-7 tex-common_6.14 texlive-base_2020.20200417-1 texlive-binaries_2020.20200327.54578-4 texlive-fonts-recommended_2020.20200417-1 texlive-latex-base_2020.20200417-1 texlive-latex-extra_2020.20200417-1 texlive-latex-recommended_2020.20200417-1 texlive-pictures_2020.20200417-1 texlive-plain-generic_2020.20200417-1 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 ucf_3.0039 util-linux_2.34-0.1ubuntu9 x11-common_1:7.7+19ubuntu14 xdg-utils_1.1.3-2ubuntu1 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed May 13 13:16:16 2020 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pytables_3.6.1-2build2.dsc dpkg-source: info: extracting pytables in pytables-3.6.1 dpkg-source: info: unpacking pytables_3.6.1.orig.tar.gz dpkg-source: info: unpacking pytables_3.6.1-2build2.debian.tar.xz tar: debian/changelog: time stamp 2020-05-13 13:16:14 is 35.91852071 s in the future tar: debian: time stamp 2020-05-13 13:16:14 is 35.913658663 s in the future dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-use-dynamic-lib.patch dpkg-source: info: applying 0002-Never-use-the-msse2-flag-explicitly.patch dpkg-source: info: applying 0003-use-local-mathjax.patch dpkg-source: info: applying 0004-remove-gtags.patch dpkg-source: info: applying 0005-Skip-index-backcompat-tests-on-bingendian.patch dpkg-source: info: applying 0006-Fix-pttree.patch dpkg-source: info: applying 0007-Fix-syntax-warnings.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19298001 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19298001 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19298001 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pytables dpkg-buildpackage: info: source version 3.6.1-2build2 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # Avoid unnecessary cythonization (see # https://github.com/PyTables/PyTables/issues/122) #dh_auto_clean --buildsystem=pybuild /usr/bin/make distclean make[2]: Entering directory '/<>' rm -f -r MANIFEST build dist tmp tables/__pycache__ rm -f bench/*.h5 bench/*.prof rm -f -r examples/*.h5 examples/raw rm -f -r *.egg-info rm -f ANNOUNCE.txt tables/*.so a.out find . '(' -name '*.py[co]' -o -name '*~' ')' -exec rm '{}' ';' for srcdir in src doc ; do /usr/bin/make -C $srcdir PYTHONPATH=/build/lib.linux-x86_64-3.8 clean ; done make[3]: Entering directory '/<>/src' rm -f version.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/doc' make[3]: Leaving directory '/<>/doc' /usr/bin/make -C src PYTHONPATH=/build/lib.linux-x86_64-3.8 distclean make[3]: Entering directory '/<>/src' rm -f version.h make[3]: Leaving directory '/<>/src' rm -f tables/_comp_*.c tables/*extension.c rm -f doc/usersguide-*.pdf rm -f -r doc/html #git clean -fdx make[2]: Leaving directory '/<>' rm -f -r doc/*.pdf tables.egg-info tmp-locales rm -f -r .pybuild make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config /tmp/lzo_version_date0mhng0xm.c: In function ‘main’: /tmp/lzo_version_date0mhng0xm.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration] 2 | lzo_version_date(); | ^~~~~~~~~~~~~~~~ /tmp/BZ2_bzlibVersionx9pyejjj.c: In function ‘main’: /tmp/BZ2_bzlibVersionx9pyejjj.c:2:5: warning: implicit declaration of function ‘BZ2_bzlibVersion’ [-Wimplicit-function-declaration] 2 | BZ2_bzlibVersion(); | ^~~~~~~~~~~~~~~~ * Using Python 3.8.2 (default, Apr 27 2020, 15:53:34) * USE_PKGCONFIG: False * Found HDF5 headers at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/include``, library at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/lib``. .. WARNING:: Could not find the HDF5 runtime. The HDF5 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * Found LZO 2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Found blosc headers at ``/usr/include``, library at ``/usr/lib``. Compiling tables/utilsextension.pyx because it changed. [1/1] Cythonizing tables/utilsextension.pyx Compiling tables/hdf5extension.pyx because it changed. [1/1] Cythonizing tables/hdf5extension.pyx Compiling tables/tableextension.pyx because it changed. [1/1] Cythonizing tables/tableextension.pyx Compiling tables/linkextension.pyx because it changed. [1/1] Cythonizing tables/linkextension.pyx Compiling tables/_comp_lzo.pyx because it changed. [1/1] Cythonizing tables/_comp_lzo.pyx Compiling tables/_comp_bzip2.pyx because it changed. [1/1] Cythonizing tables/_comp_bzip2.pyx Compiling tables/lrucacheextension.pyx because it changed. [1/1] Cythonizing tables/lrucacheextension.pyx Compiling tables/indexesextension.pyx because it changed. [1/1] Cythonizing tables/indexesextension.pyx running config /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'extra_require' warnings.warn(msg) I: pybuild base:217: python3.8-dbg setup.py config /tmp/lzo_version_dateg3lkdbqo.c: In function ‘main’: /tmp/lzo_version_dateg3lkdbqo.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration] 2 | lzo_version_date(); | ^~~~~~~~~~~~~~~~ /tmp/BZ2_bzlibVersions_tmw0_2.c: In function ‘main’: /tmp/BZ2_bzlibVersions_tmw0_2.c:2:5: warning: implicit declaration of function ‘BZ2_bzlibVersion’ [-Wimplicit-function-declaration] 2 | BZ2_bzlibVersion(); | ^~~~~~~~~~~~~~~~ * Using Python 3.8.2 (default, Apr 27 2020, 15:53:34) * USE_PKGCONFIG: False * Found HDF5 headers at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/include``, library at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/lib``. .. WARNING:: Could not find the HDF5 runtime. The HDF5 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * Found LZO 2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Found blosc headers at ``/usr/include``, library at ``/usr/lib``. running config setup.py:391: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/include/blosc.h' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'extra_require' warnings.warn(msg) debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make ANNOUNCE.txt make[2]: Entering directory '/<>' cat "ANNOUNCE.txt.in" | sed -e 's/@VERSION@/3.6.1/g' > "ANNOUNCE.txt" make[2]: Leaving directory '/<>' /usr/bin/make -C src all make[2]: Entering directory '/<>/src' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/src' dh_auto_build --buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build /tmp/lzo_version_datefwyjsyuz.c: In function ‘main’: /tmp/lzo_version_datefwyjsyuz.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration] 2 | lzo_version_date(); | ^~~~~~~~~~~~~~~~ /tmp/BZ2_bzlibVersionh8gxkech.c: In function ‘main’: /tmp/BZ2_bzlibVersionh8gxkech.c:2:5: warning: implicit declaration of function ‘BZ2_bzlibVersion’ [-Wimplicit-function-declaration] 2 | BZ2_bzlibVersion(); | ^~~~~~~~~~~~~~~~ * Using Python 3.8.2 (default, Apr 27 2020, 15:53:34) * USE_PKGCONFIG: False * Found HDF5 headers at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/include``, library at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/lib``. .. WARNING:: Could not find the HDF5 runtime. The HDF5 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * Found LZO 2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Found blosc headers at ``/usr/include``, library at ``/usr/lib``. running build running build_py creating /<>/.pybuild/cpython3_3.8/build/tables copying tables/attributeset.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/file.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/conditions.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/index.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/path.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/carray.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/description.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/__init__.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/vlarray.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/link.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/utils.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/array.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/indexes.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/idxutils.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/parameters.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/node.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/undoredo.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/flavor.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/leaf.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/unimplemented.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/table.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/exceptions.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/earray.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/registry.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/group.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/req_versions.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/expression.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/filters.py -> /<>/.pybuild/cpython3_3.8/build/tables copying tables/atom.py -> /<>/.pybuild/cpython3_3.8/build/tables creating /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_garbage.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_nestedtypes.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_lists.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_all.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_suite.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_queries.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/__init__.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_earray.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_utils.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_backcompat.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_array.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_tablesMD.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_types.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_timetype.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_indexvalues.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_do_undo.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_numpy.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_timestamps.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_aux.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_vlarray.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_enum.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_attributes.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_indexes.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_expression.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_tables.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/common.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/create_backcompat_indexes.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_index_backcompat.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_hdf5compat.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_carray.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_tree.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_links.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_basics.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/check_leaks.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_create.py -> /<>/.pybuild/cpython3_3.8/build/tables/tests creating /<>/.pybuild/cpython3_3.8/build/tables/nodes copying tables/nodes/filenode.py -> /<>/.pybuild/cpython3_3.8/build/tables/nodes copying tables/nodes/__init__.py -> /<>/.pybuild/cpython3_3.8/build/tables/nodes creating /<>/.pybuild/cpython3_3.8/build/tables/misc copying tables/misc/__init__.py -> /<>/.pybuild/cpython3_3.8/build/tables/misc copying tables/misc/proxydict.py -> /<>/.pybuild/cpython3_3.8/build/tables/misc copying tables/misc/enum.py -> /<>/.pybuild/cpython3_3.8/build/tables/misc creating /<>/.pybuild/cpython3_3.8/build/tables/scripts copying tables/scripts/ptdump.py -> /<>/.pybuild/cpython3_3.8/build/tables/scripts copying tables/scripts/__init__.py -> /<>/.pybuild/cpython3_3.8/build/tables/scripts copying tables/scripts/ptrepack.py -> /<>/.pybuild/cpython3_3.8/build/tables/scripts copying tables/scripts/pt2to3.py -> /<>/.pybuild/cpython3_3.8/build/tables/scripts copying tables/scripts/pttree.py -> /<>/.pybuild/cpython3_3.8/build/tables/scripts creating /<>/.pybuild/cpython3_3.8/build/tables/nodes/tests copying tables/nodes/tests/__init__.py -> /<>/.pybuild/cpython3_3.8/build/tables/nodes/tests copying tables/nodes/tests/test_filenode.py -> /<>/.pybuild/cpython3_3.8/build/tables/nodes/tests copying tables/tests/vlstr_attr.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/idx-std-1.x.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/float.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_SDSextendible.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/Tables_lzo1_shuffle.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/Tables_lzo1.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_i64be.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/scalar.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/bug-idx.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/Tables_lzo2.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_i64le.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/Tables_lzo2_shuffle.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/python3.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/ex-noattr.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/time-table-vlarray-1_x.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/nested-type-with-gaps.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/issue_368.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/slink.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/array_mdatom.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/zerodim-attrs-1.3.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/times-nested-be.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/elink.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/zerodim-attrs-1.4.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_i32le.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/python2.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_i32be.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_f64be.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_f64le.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/indexes_2_1.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/issue_560.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_unsupptype.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/elink2.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/attr-u16.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_enum.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/flavored_vlarrays-format1.6.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_szip.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/indexes_2_0.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/blosc_bigendian.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/smpl_compound_chunked.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/vlunicode_endian.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/non-chunked-table.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/oldflavor_numeric.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/itemsize.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_ref_array1.mat -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/test_ref_array2.mat -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/tests/matlab_file.mat -> /<>/.pybuild/cpython3_3.8/build/tables/tests copying tables/nodes/tests/test_filenode.dat -> /<>/.pybuild/cpython3_3.8/build/tables/nodes/tests copying tables/nodes/tests/test_filenode.xbm -> /<>/.pybuild/cpython3_3.8/build/tables/nodes/tests copying tables/nodes/tests/test_filenode_v1.h5 -> /<>/.pybuild/cpython3_3.8/build/tables/nodes/tests running build_ext building 'tables.utilsextension' extension creating build creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/tables creating build/temp.linux-x86_64-3.8/src creating build/temp.linux-x86_64-3.8/hdf5-blosc creating build/temp.linux-x86_64-3.8/hdf5-blosc/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/utilsextension.c -o build/temp.linux-x86_64-3.8/tables/utilsextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/utilsextension.c:612: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_34blosc_compressor_list’: tables/utilsextension.c:7107:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 7107 | __pyx_t_1 = blosc_list_compressors(); | ^ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_36blosc_compcode_to_compname_’: tables/utilsextension.c:7281:56: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 7281 | __pyx_t_2 = ((blosc_compcode_to_compname(__pyx_t_1, (&__pyx_v_cname)) >= 0) != 0); | ~^~~~~~~~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from tables/utilsextension.c:619: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_40which_class’: tables/utilsextension.c:8092:52: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 8092 | __pyx_t_2 = (((__pyx_v_maxdims[__pyx_v_i]) == -1LL) != 0); | ^~ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_58hdf5_to_np_nested_type’: tables/utilsextension.c:12375:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12375 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ^ tables/utilsextension.c: In function ‘__pyx_f_6tables_14utilsextension_load_reference’: tables/utilsextension.c:15174:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15174 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { | ^ tables/utilsextension.c:15401:52: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 15401 | __pyx_t_3 = (((__pyx_v_maxdims[__pyx_v_j]) == -1LL) != 0); | ^~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/utils.c -o build/temp.linux-x86_64-3.8/src/utils.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5ARRAY.c -o build/temp.linux-x86_64-3.8/src/H5ARRAY.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5ATTR.c -o build/temp.linux-x86_64-3.8/src/H5ATTR.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c hdf5-blosc/src/blosc_filter.c -o build/temp.linux-x86_64-3.8/hdf5-blosc/src/blosc_filter.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 hdf5-blosc/src/blosc_filter.c: In function ‘blosc_filter’: hdf5-blosc/src/blosc_filter.c:182:18: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 182 | complist = blosc_list_compressors(); | ^ hdf5-blosc/src/blosc_filter.c:183:46: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 183 | code = blosc_compcode_to_compname(compcode, &compname); | ^~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from hdf5-blosc/src/blosc_filter.c:19: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ hdf5-blosc/src/blosc_filter.c:159:10: warning: unused variable ‘errmsg’ [-Wunused-variable] 159 | char errmsg[256]; | ^~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/utilsextension.o build/temp.linux-x86_64-3.8/src/utils.o build/temp.linux-x86_64-3.8/src/H5ARRAY.o build/temp.linux-x86_64-3.8/src/H5ATTR.o build/temp.linux-x86_64-3.8/hdf5-blosc/src/blosc_filter.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8/build/tables/utilsextension.cpython-38-x86_64-linux-gnu.so building 'tables.hdf5extension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/hdf5extension.c -o build/temp.linux-x86_64-3.8/tables/hdf5extension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/hdf5extension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/hdf5extension.c: In function ‘__pyx_pf_6tables_13hdf5extension_5Array_4_open_array’: tables/hdf5extension.c:18511:54: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 18511 | __pyx_t_5 = (((__pyx_v_self->maxdims[__pyx_v_i]) == -1LL) != 0); | ^~ tables/hdf5extension.c: In function ‘__pyx_pf_6tables_13hdf5extension_7VLArray_10_read_array’: tables/hdf5extension.c:26272:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 26272 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) { | ^ tables/hdf5extension.c: In function ‘__Pyx_PyInt_As_hbool_t’: tables/hdf5extension.c:38204:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 38204 | return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/hdf5extension.c:38222:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 38222 | return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/hdf5extension.c:38240:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 38240 | return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/utils.c -o build/temp.linux-x86_64-3.8/src/utils.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/typeconv.c -o build/temp.linux-x86_64-3.8/src/typeconv.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5ARRAY.c -o build/temp.linux-x86_64-3.8/src/H5ARRAY.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5ARRAY-opt.c -o build/temp.linux-x86_64-3.8/src/H5ARRAY-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5VLARRAY.c -o build/temp.linux-x86_64-3.8/src/H5VLARRAY.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5VLARRAY.c:3: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5VLARRAY.c:3: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5ATTR.c -o build/temp.linux-x86_64-3.8/src/H5ATTR.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c hdf5-blosc/src/blosc_filter.c -o build/temp.linux-x86_64-3.8/hdf5-blosc/src/blosc_filter.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 hdf5-blosc/src/blosc_filter.c: In function ‘blosc_filter’: hdf5-blosc/src/blosc_filter.c:182:18: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 182 | complist = blosc_list_compressors(); | ^ hdf5-blosc/src/blosc_filter.c:183:46: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 183 | code = blosc_compcode_to_compname(compcode, &compname); | ^~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from hdf5-blosc/src/blosc_filter.c:19: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ hdf5-blosc/src/blosc_filter.c:159:10: warning: unused variable ‘errmsg’ [-Wunused-variable] 159 | char errmsg[256]; | ^~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/hdf5extension.o build/temp.linux-x86_64-3.8/src/utils.o build/temp.linux-x86_64-3.8/src/typeconv.o build/temp.linux-x86_64-3.8/src/H5ARRAY.o build/temp.linux-x86_64-3.8/src/H5ARRAY-opt.o build/temp.linux-x86_64-3.8/src/H5VLARRAY.o build/temp.linux-x86_64-3.8/src/H5ATTR.o build/temp.linux-x86_64-3.8/hdf5-blosc/src/blosc_filter.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8/build/tables/hdf5extension.cpython-38-x86_64-linux-gnu.so building 'tables.tableextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/tableextension.c -o build/temp.linux-x86_64-3.8/tables/tableextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/tableextension.c:612: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_5Table_get_nested_type’: tables/tableextension.c:4687:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 4687 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row__init_loop’: tables/tableextension.c:11718:37: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 11718 | __pyx_t_2 = (__pyx_v_self->stop < __pyx_v_self->nrows); | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__indexed’: tables/tableextension.c:12140:45: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12140 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:12370:47: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 12370 | __pyx_t_1 = ((__pyx_v_self->nrowsread > __pyx_v_self->stop) != 0); | ^ tables/tableextension.c:12408:33: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12408 | __pyx_t_1 = ((__pyx_v_j == __pyx_v_self->nchunksinbuf) != 0); | ^~ tables/tableextension.c:12700:58: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 12700 | __pyx_t_1 = (((__pyx_v_self->lenbuf + __pyx_t_8) < __pyx_v_self->iterseq_max_elements) != 0); | ^ tables/tableextension.c:12798:38: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12798 | __pyx_t_1 = ((__pyx_v_self->_row == __pyx_v_self->lenbuf) != 0); | ^~ tables/tableextension.c:12864:42: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12864 | __pyx_t_11 = ((__pyx_v_self->_nrow < __pyx_v_self->start) != 0); | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__coords’: tables/tableextension.c:13095:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13095 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:13105:76: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 13105 | __pyx_t_1 = (((__pyx_v_self->nrowsread + __pyx_v_self->nrowsinbuf) > __pyx_v_self->stop) != 0); | ^ tables/tableextension.c:13450:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘long long unsigned int’ [-Wsign-compare] 13450 | __pyx_t_1 = ((__pyx_v_self->nextelement < ((__pyx_v_self->start - ((PY_LONG_LONG)__pyx_v_self->nrowsread)) + 1)) != 0); | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__inkernel’: tables/tableextension.c:13801:45: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13801 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:13812:49: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13812 | __pyx_t_1 = ((__pyx_v_self->nextelement >= (__pyx_v_self->nrowsread + __pyx_v_self->nrowsinbuf)) != 0); | ^~ tables/tableextension.c:13841:41: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13841 | __pyx_t_1 = ((__pyx_v_self->stopb > __pyx_v_self->nrowsinbuf) != 0); | ^ tables/tableextension.c:14103:43: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14103 | __pyx_t_10 = ((__pyx_v_self->step >= __pyx_v_self->nrowsinbuf) != 0); | ^~ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__general’: tables/tableextension.c:14404:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14404 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:14415:51: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14415 | __pyx_t_1 = ((__pyx_v_self->nextelement >= (__pyx_v_self->nrowsread + __pyx_v_self->nrowsinbuf)) != 0); | ^~ tables/tableextension.c:14444:43: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14444 | __pyx_t_1 = ((__pyx_v_self->stopb > __pyx_v_self->nrowsinbuf) != 0); | ^ tables/tableextension.c:14715:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14715 | __pyx_t_1 = ((__pyx_v_self->nextelement < ((__pyx_v_self->start - __pyx_v_self->nrowsread) + 1)) != 0); | ^ tables/tableextension.c: In function ‘__pyx_pf_6tables_14tableextension_3Row_8_fill_col’: tables/tableextension.c:15472:36: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 15472 | __pyx_t_7 = ((__pyx_v_istopb > __pyx_v_inrowsinbuf) != 0); | ^ tables/tableextension.c: In function ‘__pyx_pf_6tables_14tableextension_3Row_10append’: tables/tableextension.c:16490:46: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 16490 | __pyx_t_1 = ((__pyx_v_self->_unsaved_nrows == __pyx_v_self->nrowsinbuf) != 0); | ^~ tables/tableextension.c: In function ‘__pyx_pf_6tables_14tableextension_3Row_16update’: tables/tableextension.c:17005:42: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 17005 | __pyx_t_3 = ((__pyx_v_self->_mod_nrows == __pyx_v_self->nrowsinbuf) != 0); | ^~ tables/tableextension.c: In function ‘__Pyx_PyInt_As_hbool_t’: tables/tableextension.c:26790:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 26790 | return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/tableextension.c:26808:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 26808 | return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/tableextension.c:26826:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 26826 | return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/utils.c -o build/temp.linux-x86_64-3.8/src/utils.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/typeconv.c -o build/temp.linux-x86_64-3.8/src/typeconv.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5TB-opt.c -o build/temp.linux-x86_64-3.8/src/H5TB-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5ATTR.c -o build/temp.linux-x86_64-3.8/src/H5ATTR.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c hdf5-blosc/src/blosc_filter.c -o build/temp.linux-x86_64-3.8/hdf5-blosc/src/blosc_filter.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 hdf5-blosc/src/blosc_filter.c: In function ‘blosc_filter’: hdf5-blosc/src/blosc_filter.c:182:18: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 182 | complist = blosc_list_compressors(); | ^ hdf5-blosc/src/blosc_filter.c:183:46: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 183 | code = blosc_compcode_to_compname(compcode, &compname); | ^~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from hdf5-blosc/src/blosc_filter.c:19: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ hdf5-blosc/src/blosc_filter.c:159:10: warning: unused variable ‘errmsg’ [-Wunused-variable] 159 | char errmsg[256]; | ^~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/tableextension.o build/temp.linux-x86_64-3.8/src/utils.o build/temp.linux-x86_64-3.8/src/typeconv.o build/temp.linux-x86_64-3.8/src/H5TB-opt.o build/temp.linux-x86_64-3.8/src/H5ATTR.o build/temp.linux-x86_64-3.8/hdf5-blosc/src/blosc_filter.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8/build/tables/tableextension.cpython-38-x86_64-linux-gnu.so building 'tables._comp_lzo' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/_comp_lzo.c -o build/temp.linux-x86_64-3.8/tables/_comp_lzo.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5Zlzo.c -o build/temp.linux-x86_64-3.8/src/H5Zlzo.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/_comp_lzo.o build/temp.linux-x86_64-3.8/src/H5Zlzo.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -llzo2 -o /<>/.pybuild/cpython3_3.8/build/tables/_comp_lzo.cpython-38-x86_64-linux-gnu.so building 'tables._comp_bzip2' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/_comp_bzip2.c -o build/temp.linux-x86_64-3.8/tables/_comp_bzip2.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5Zbzip2.c -o build/temp.linux-x86_64-3.8/src/H5Zbzip2.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/_comp_bzip2.o build/temp.linux-x86_64-3.8/src/H5Zbzip2.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lbz2 -o /<>/.pybuild/cpython3_3.8/build/tables/_comp_bzip2.cpython-38-x86_64-linux-gnu.so building 'tables.linkextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/linkextension.c -o build/temp.linux-x86_64-3.8/tables/linkextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/linkextension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/linkextension.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8/build/tables/linkextension.cpython-38-x86_64-linux-gnu.so building 'tables.lrucacheextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/lrucacheextension.c -o build/temp.linux-x86_64-3.8/tables/lrucacheextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/lrucacheextension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/lrucacheextension.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -o /<>/.pybuild/cpython3_3.8/build/tables/lrucacheextension.cpython-38-x86_64-linux-gnu.so building 'tables.indexesextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c tables/indexesextension.c -o build/temp.linux-x86_64-3.8/tables/indexesextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/indexesextension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/indexesextension.c: In function ‘__pyx_f_6tables_16indexesextension__keysort_string’: tables/indexesextension.c:14109:47: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 14109 | __pyx_t_1 = (((__pyx_v_pr - __pyx_v_pl) > (15 * __pyx_v_ss)) != 0); | ^ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/H5ARRAY-opt.c -o build/temp.linux-x86_64-3.8/src/H5ARRAY-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/idx-opt.c -o build/temp.linux-x86_64-3.8/src/idx-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/idx-opt.h:2, from src/idx-opt.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/idx-opt.h:2, from src/idx-opt.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/tables/indexesextension.o build/temp.linux-x86_64-3.8/src/H5ARRAY-opt.o build/temp.linux-x86_64-3.8/src/idx-opt.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8/build/tables/indexesextension.cpython-38-x86_64-linux-gnu.so /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'extra_require' warnings.warn(msg) I: pybuild base:217: /usr/bin/python3-dbg setup.py build /tmp/lzo_version_datejuv_4r2s.c: In function ‘main’: /tmp/lzo_version_datejuv_4r2s.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration] 2 | lzo_version_date(); | ^~~~~~~~~~~~~~~~ /tmp/BZ2_bzlibVersion817ocud5.c: In function ‘main’: /tmp/BZ2_bzlibVersion817ocud5.c:2:5: warning: implicit declaration of function ‘BZ2_bzlibVersion’ [-Wimplicit-function-declaration] 2 | BZ2_bzlibVersion(); | ^~~~~~~~~~~~~~~~ * Using Python 3.8.2 (default, Apr 27 2020, 15:53:34) * USE_PKGCONFIG: False * Found HDF5 headers at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/include``, library at ``/usr/lib/x86_64-linux-gnu/hdf5/serial/lib``. .. WARNING:: Could not find the HDF5 runtime. The HDF5 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * Found LZO 2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/include``, the library is located in the standard system search dirs. * Found blosc headers at ``/usr/include``, library at ``/usr/lib``. running build running build_py creating /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/attributeset.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/file.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/conditions.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/index.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/path.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/carray.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/description.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/__init__.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/vlarray.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/link.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/utils.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/array.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/indexes.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/idxutils.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/parameters.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/node.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/undoredo.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/flavor.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/leaf.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/unimplemented.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/table.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/exceptions.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/earray.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/registry.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/group.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/req_versions.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/expression.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/filters.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables copying tables/atom.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables creating /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_garbage.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_nestedtypes.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_lists.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_all.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_suite.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_queries.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_earray.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_utils.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_backcompat.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_array.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_tablesMD.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_types.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_timetype.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_indexvalues.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_do_undo.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_numpy.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_timestamps.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_aux.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_vlarray.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_enum.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_attributes.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_indexes.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_expression.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_tables.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/common.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/create_backcompat_indexes.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_index_backcompat.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_hdf5compat.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_carray.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_tree.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_links.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_basics.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/check_leaks.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_create.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests creating /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes copying tables/nodes/filenode.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes copying tables/nodes/__init__.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes creating /<>/.pybuild/cpython3_3.8_dbg/build/tables/misc copying tables/misc/__init__.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/misc copying tables/misc/proxydict.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/misc copying tables/misc/enum.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/misc creating /<>/.pybuild/cpython3_3.8_dbg/build/tables/scripts copying tables/scripts/ptdump.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/scripts copying tables/scripts/__init__.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/scripts copying tables/scripts/ptrepack.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/scripts copying tables/scripts/pt2to3.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/scripts copying tables/scripts/pttree.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/scripts creating /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes/tests copying tables/nodes/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes/tests copying tables/nodes/tests/test_filenode.py -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes/tests copying tables/tests/vlstr_attr.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/idx-std-1.x.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/float.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_SDSextendible.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/Tables_lzo1_shuffle.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/Tables_lzo1.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_i64be.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/scalar.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/bug-idx.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/Tables_lzo2.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_i64le.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/Tables_lzo2_shuffle.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/python3.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/ex-noattr.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/time-table-vlarray-1_x.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/nested-type-with-gaps.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/issue_368.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/slink.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/array_mdatom.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/zerodim-attrs-1.3.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/times-nested-be.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/elink.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/zerodim-attrs-1.4.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_i32le.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/python2.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_i32be.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_f64be.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_f64le.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/indexes_2_1.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/issue_560.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_unsupptype.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/elink2.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/attr-u16.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_enum.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/flavored_vlarrays-format1.6.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_szip.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/indexes_2_0.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/blosc_bigendian.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/smpl_compound_chunked.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/vlunicode_endian.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/non-chunked-table.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/oldflavor_numeric.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/itemsize.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_ref_array1.mat -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/test_ref_array2.mat -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/tests/matlab_file.mat -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/tests copying tables/nodes/tests/test_filenode.dat -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes/tests copying tables/nodes/tests/test_filenode.xbm -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes/tests copying tables/nodes/tests/test_filenode_v1.h5 -> /<>/.pybuild/cpython3_3.8_dbg/build/tables/nodes/tests running build_ext building 'tables.utilsextension' extension creating build/temp.linux-x86_64-3.8-pydebug creating build/temp.linux-x86_64-3.8-pydebug/tables creating build/temp.linux-x86_64-3.8-pydebug/src creating build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc creating build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/utilsextension.c -o build/temp.linux-x86_64-3.8-pydebug/tables/utilsextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/utilsextension.c:612: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_34blosc_compressor_list’: tables/utilsextension.c:7107:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 7107 | __pyx_t_1 = blosc_list_compressors(); | ^ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_36blosc_compcode_to_compname_’: tables/utilsextension.c:7281:56: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 7281 | __pyx_t_2 = ((blosc_compcode_to_compname(__pyx_t_1, (&__pyx_v_cname)) >= 0) != 0); | ~^~~~~~~~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from tables/utilsextension.c:619: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_40which_class’: tables/utilsextension.c:8092:52: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 8092 | __pyx_t_2 = (((__pyx_v_maxdims[__pyx_v_i]) == -1LL) != 0); | ^~ tables/utilsextension.c: In function ‘__pyx_pf_6tables_14utilsextension_58hdf5_to_np_nested_type’: tables/utilsextension.c:12375:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12375 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ^ tables/utilsextension.c: In function ‘__pyx_f_6tables_14utilsextension_load_reference’: tables/utilsextension.c:15174:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15174 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { | ^ tables/utilsextension.c:15401:52: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 15401 | __pyx_t_3 = (((__pyx_v_maxdims[__pyx_v_j]) == -1LL) != 0); | ^~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/utils.c -o build/temp.linux-x86_64-3.8-pydebug/src/utils.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5ARRAY.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5ATTR.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5ATTR.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c hdf5-blosc/src/blosc_filter.c -o build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc/src/blosc_filter.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 hdf5-blosc/src/blosc_filter.c: In function ‘blosc_filter’: hdf5-blosc/src/blosc_filter.c:182:18: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 182 | complist = blosc_list_compressors(); | ^ hdf5-blosc/src/blosc_filter.c:183:46: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 183 | code = blosc_compcode_to_compname(compcode, &compname); | ^~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from hdf5-blosc/src/blosc_filter.c:19: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ hdf5-blosc/src/blosc_filter.c:159:10: warning: unused variable ‘errmsg’ [-Wunused-variable] 159 | char errmsg[256]; | ^~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/utilsextension.o build/temp.linux-x86_64-3.8-pydebug/src/utils.o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY.o build/temp.linux-x86_64-3.8-pydebug/src/H5ATTR.o build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc/src/blosc_filter.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/utilsextension.cpython-38d-x86_64-linux-gnu.so building 'tables.hdf5extension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/hdf5extension.c -o build/temp.linux-x86_64-3.8-pydebug/tables/hdf5extension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/hdf5extension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/hdf5extension.c: In function ‘__pyx_pf_6tables_13hdf5extension_5Array_4_open_array’: tables/hdf5extension.c:18511:54: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 18511 | __pyx_t_5 = (((__pyx_v_self->maxdims[__pyx_v_i]) == -1LL) != 0); | ^~ tables/hdf5extension.c: In function ‘__pyx_pf_6tables_13hdf5extension_7VLArray_10_read_array’: tables/hdf5extension.c:26272:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 26272 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) { | ^ tables/hdf5extension.c: In function ‘__Pyx_PyInt_As_hbool_t’: tables/hdf5extension.c:38204:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 38204 | return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/hdf5extension.c:38222:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 38222 | return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/hdf5extension.c:38240:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 38240 | return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/utils.c -o build/temp.linux-x86_64-3.8-pydebug/src/utils.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/typeconv.c -o build/temp.linux-x86_64-3.8-pydebug/src/typeconv.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5ARRAY.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5ARRAY-opt.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5VLARRAY.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5VLARRAY.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5VLARRAY.c:3: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5VLARRAY.c:3: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5ATTR.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5ATTR.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c hdf5-blosc/src/blosc_filter.c -o build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc/src/blosc_filter.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 hdf5-blosc/src/blosc_filter.c: In function ‘blosc_filter’: hdf5-blosc/src/blosc_filter.c:182:18: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 182 | complist = blosc_list_compressors(); | ^ hdf5-blosc/src/blosc_filter.c:183:46: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 183 | code = blosc_compcode_to_compname(compcode, &compname); | ^~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from hdf5-blosc/src/blosc_filter.c:19: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ hdf5-blosc/src/blosc_filter.c:159:10: warning: unused variable ‘errmsg’ [-Wunused-variable] 159 | char errmsg[256]; | ^~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/hdf5extension.o build/temp.linux-x86_64-3.8-pydebug/src/utils.o build/temp.linux-x86_64-3.8-pydebug/src/typeconv.o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY.o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY-opt.o build/temp.linux-x86_64-3.8-pydebug/src/H5VLARRAY.o build/temp.linux-x86_64-3.8-pydebug/src/H5ATTR.o build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc/src/blosc_filter.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/hdf5extension.cpython-38d-x86_64-linux-gnu.so building 'tables.tableextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/tableextension.c -o build/temp.linux-x86_64-3.8-pydebug/tables/tableextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/tableextension.c:612: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_5Table_get_nested_type’: tables/tableextension.c:4687:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 4687 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row__init_loop’: tables/tableextension.c:11718:37: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 11718 | __pyx_t_2 = (__pyx_v_self->stop < __pyx_v_self->nrows); | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__indexed’: tables/tableextension.c:12140:45: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12140 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:12370:47: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 12370 | __pyx_t_1 = ((__pyx_v_self->nrowsread > __pyx_v_self->stop) != 0); | ^ tables/tableextension.c:12408:33: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12408 | __pyx_t_1 = ((__pyx_v_j == __pyx_v_self->nchunksinbuf) != 0); | ^~ tables/tableextension.c:12700:58: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 12700 | __pyx_t_1 = (((__pyx_v_self->lenbuf + __pyx_t_8) < __pyx_v_self->iterseq_max_elements) != 0); | ^ tables/tableextension.c:12798:38: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12798 | __pyx_t_1 = ((__pyx_v_self->_row == __pyx_v_self->lenbuf) != 0); | ^~ tables/tableextension.c:12864:42: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 12864 | __pyx_t_11 = ((__pyx_v_self->_nrow < __pyx_v_self->start) != 0); | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__coords’: tables/tableextension.c:13095:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13095 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:13105:76: warning: comparison of integer expressions of different signedness: ‘hsize_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 13105 | __pyx_t_1 = (((__pyx_v_self->nrowsread + __pyx_v_self->nrowsinbuf) > __pyx_v_self->stop) != 0); | ^ tables/tableextension.c:13450:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘long long unsigned int’ [-Wsign-compare] 13450 | __pyx_t_1 = ((__pyx_v_self->nextelement < ((__pyx_v_self->start - ((PY_LONG_LONG)__pyx_v_self->nrowsread)) + 1)) != 0); | ^ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__inkernel’: tables/tableextension.c:13801:45: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13801 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:13812:49: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13812 | __pyx_t_1 = ((__pyx_v_self->nextelement >= (__pyx_v_self->nrowsread + __pyx_v_self->nrowsinbuf)) != 0); | ^~ tables/tableextension.c:13841:41: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 13841 | __pyx_t_1 = ((__pyx_v_self->stopb > __pyx_v_self->nrowsinbuf) != 0); | ^ tables/tableextension.c:14103:43: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14103 | __pyx_t_10 = ((__pyx_v_self->step >= __pyx_v_self->nrowsinbuf) != 0); | ^~ tables/tableextension.c: In function ‘__pyx_f_6tables_14tableextension_3Row___next__general’: tables/tableextension.c:14404:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14404 | __pyx_t_1 = ((__pyx_v_self->nextelement >= __pyx_v_self->nrowsread) != 0); | ^~ tables/tableextension.c:14415:51: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14415 | __pyx_t_1 = ((__pyx_v_self->nextelement >= (__pyx_v_self->nrowsread + __pyx_v_self->nrowsinbuf)) != 0); | ^~ tables/tableextension.c:14444:43: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14444 | __pyx_t_1 = ((__pyx_v_self->stopb > __pyx_v_self->nrowsinbuf) != 0); | ^ tables/tableextension.c:14715:47: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 14715 | __pyx_t_1 = ((__pyx_v_self->nextelement < ((__pyx_v_self->start - __pyx_v_self->nrowsread) + 1)) != 0); | ^ tables/tableextension.c: In function ‘__pyx_pf_6tables_14tableextension_3Row_8_fill_col’: tables/tableextension.c:15472:36: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 15472 | __pyx_t_7 = ((__pyx_v_istopb > __pyx_v_inrowsinbuf) != 0); | ^ tables/tableextension.c: In function ‘__pyx_pf_6tables_14tableextension_3Row_10append’: tables/tableextension.c:16490:46: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 16490 | __pyx_t_1 = ((__pyx_v_self->_unsaved_nrows == __pyx_v_self->nrowsinbuf) != 0); | ^~ tables/tableextension.c: In function ‘__pyx_pf_6tables_14tableextension_3Row_16update’: tables/tableextension.c:17005:42: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘hsize_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 17005 | __pyx_t_3 = ((__pyx_v_self->_mod_nrows == __pyx_v_self->nrowsinbuf) != 0); | ^~ tables/tableextension.c: In function ‘__Pyx_PyInt_As_hbool_t’: tables/tableextension.c:26790:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 26790 | return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/tableextension.c:26808:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 26808 | return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tables/tableextension.c:26826:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] 26826 | return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/utils.c -o build/temp.linux-x86_64-3.8-pydebug/src/utils.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/typeconv.c -o build/temp.linux-x86_64-3.8-pydebug/src/typeconv.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5TB-opt.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5TB-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5ATTR.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5ATTR.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c hdf5-blosc/src/blosc_filter.c -o build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc/src/blosc_filter.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 hdf5-blosc/src/blosc_filter.c: In function ‘blosc_filter’: hdf5-blosc/src/blosc_filter.c:182:18: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 182 | complist = blosc_list_compressors(); | ^ hdf5-blosc/src/blosc_filter.c:183:46: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types] 183 | code = blosc_compcode_to_compname(compcode, &compname); | ^~~~~~~~~ | | | char ** In file included from hdf5-blosc/src/blosc_filter.h:8, from hdf5-blosc/src/blosc_filter.c:19: /usr/include/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’ 389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname); | ~~~~~~~~~~~~~^~~~~~~~ hdf5-blosc/src/blosc_filter.c:159:10: warning: unused variable ‘errmsg’ [-Wunused-variable] 159 | char errmsg[256]; | ^~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/tableextension.o build/temp.linux-x86_64-3.8-pydebug/src/utils.o build/temp.linux-x86_64-3.8-pydebug/src/typeconv.o build/temp.linux-x86_64-3.8-pydebug/src/H5TB-opt.o build/temp.linux-x86_64-3.8-pydebug/src/H5ATTR.o build/temp.linux-x86_64-3.8-pydebug/hdf5-blosc/src/blosc_filter.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/tableextension.cpython-38d-x86_64-linux-gnu.so building 'tables._comp_lzo' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/_comp_lzo.c -o build/temp.linux-x86_64-3.8-pydebug/tables/_comp_lzo.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5Zlzo.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5Zlzo.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/_comp_lzo.o build/temp.linux-x86_64-3.8-pydebug/src/H5Zlzo.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -llzo2 -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/_comp_lzo.cpython-38d-x86_64-linux-gnu.so building 'tables._comp_bzip2' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/_comp_bzip2.c -o build/temp.linux-x86_64-3.8-pydebug/tables/_comp_bzip2.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5Zbzip2.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5Zbzip2.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/_comp_bzip2.o build/temp.linux-x86_64-3.8-pydebug/src/H5Zbzip2.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lbz2 -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/_comp_bzip2.cpython-38d-x86_64-linux-gnu.so building 'tables.linkextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/linkextension.c -o build/temp.linux-x86_64-3.8-pydebug/tables/linkextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/linkextension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/linkextension.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/linkextension.cpython-38d-x86_64-linux-gnu.so building 'tables.lrucacheextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/lrucacheextension.c -o build/temp.linux-x86_64-3.8-pydebug/tables/lrucacheextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/lrucacheextension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/lrucacheextension.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/lrucacheextension.cpython-38d-x86_64-linux-gnu.so building 'tables.indexesextension' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c tables/indexesextension.c -o build/temp.linux-x86_64-3.8-pydebug/tables/indexesextension.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/indexesextension.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tables/indexesextension.c: In function ‘__pyx_f_6tables_16indexesextension__keysort_string’: tables/indexesextension.c:14109:47: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 14109 | __pyx_t_1 = (((__pyx_v_pr - __pyx_v_pl) > (15 * __pyx_v_ss)) != 0); | ^ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/H5ARRAY-opt.c -o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8d -c src/idx-opt.c -o build/temp.linux-x86_64-3.8-pydebug/src/idx-opt.o -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/idx-opt.h:2, from src/idx-opt.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/idx-opt.h:2, from src/idx-opt.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/tables/indexesextension.o build/temp.linux-x86_64-3.8-pydebug/src/H5ARRAY-opt.o build/temp.linux-x86_64-3.8-pydebug/src/idx-opt.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lblosc -o /<>/.pybuild/cpython3_3.8_dbg/build/tables/indexesextension.cpython-38d-x86_64-linux-gnu.so setup.py:391: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/include/blosc.h' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'extra_require' warnings.warn(msg) cd /<>/.pybuild/cpython3_3.8/build && \ env PYTHONPATH=. python3 -m sphinx -M html /<>/doc/source 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