https://launchpad.net/ubuntu/+source/python-biom-format/2.1.15.2-3build1/+build/28045395 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-017 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:39 UTC 2024 x86_64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 10 Apr 17:15:43 ntpdate[1873]: adjust time server 10.131.248.1 offset -0.001624 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28045395 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-28045395 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28045395 Starting target for build PACKAGEBUILD-28045395 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28045395 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28045395 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28045395 Updating target for build PACKAGEBUILD-28045395 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1410 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.6 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6070 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [348 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [139 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [751 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [262 kB] Fetched 25.7 MB in 3s (9843 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-x86-64-linux-gnu gcc-14-base gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 176 upgraded, 23 newly installed, 14 to remove and 0 not upgraded. Need to get 121 MB of archives. After this operation, 78.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcrypt-dev amd64 1:4.4.36-4build1 [112 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu7 [67.4 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu8 [2124 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu8 [20.4 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1build1 [193 kB] Get:8 http://ftpmaster.internal/ubuntu noble/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1build1 [82.6 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libacl1 amd64 2.3.2-1build1 [16.8 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0-beta3-0ubuntu3 [49.5 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.4-2build2 [15.2 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libblkid1 amd64 2.39.3-9ubuntu5 [122 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcap2 amd64 1:2.66-5ubuntu2 [30.0 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcrypt1 amd64 1:4.4.36-4build1 [82.3 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgpg-error-l10n all 1.47-3build2 [8064 B] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgpg-error0 amd64 1.47-3build2 [70.0 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgcrypt20 amd64 1.10.3-2build1 [532 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [127 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libzstd1 amd64 1.5.5+dfsg2-2build1 [299 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkmod2 amd64 31+20240202-2ubuntu6 [51.6 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblz4-1 amd64 1.9.4-1build1 [63.0 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu2 [227 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmount1 amd64 2.39.3-9ubuntu5 [134 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-6build1 [734 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm6t64 amd64 1.23-5.1build1 [34.4 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm-compat4t64 amd64 1.23-5.1build1 [6710 B] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libperl5.38t64 amd64 5.38.2-3.2build2 [4873 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 perl amd64 5.38.2-3.2build2 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 perl-base amd64 5.38.2-3.2build2 [1823 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 liblocale-gettext-perl amd64 1.07-6ubuntu5 [15.8 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu8 [3265 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu8 [682 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.13-0ubuntu3 [1002 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd-shared amd64 255.4-1ubuntu7 [2067 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu4 [266 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3t64 amd64 3.0.13-0ubuntu3 [1936 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-dev all 255.4-1ubuntu7 [104 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-sysv amd64 255.4-1ubuntu7 [11.9 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 systemd amd64 255.4-1ubuntu7 [3470 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd0 amd64 255.4-1ubuntu7 [432 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.3-5ubuntu4 [51.9 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.3-5ubuntu4 [279 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu2 [299 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libunistring5 amd64 1.1-2build1 [535 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30t64 amd64 3.8.3-1.1ubuntu3 [998 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libapt-pkg6.0t64 amd64 2.7.14build2 [985 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-14-base amd64 14-20240330-1ubuntu2 [47.5 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-s1 amd64 14-20240330-1ubuntu2 [77.7 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++6 amd64 14-20240330-1ubuntu2 [795 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libudev1 amd64 255.4-1ubuntu7 [174 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxxhash0 amd64 0.8.2-2build1 [24.1 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu5 [253 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libffi8 amd64 3.4.6-1build1 [24.7 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libidn2-0 amd64 2.3.7-2build1 [66.2 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtasn1-6 amd64 4.19.0-3build1 [43.9 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 base-passwd amd64 3.6.3build1 [51.1 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libassuan0 amd64 2.5.6-1build1 [37.3 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libsqlite3-0 amd64 3.45.1-1ubuntu2 [701 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 gpg amd64 2.4.4-2ubuntu17 [565 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 readline-common all 8.2-4build1 [56.5 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu2 [148 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu2 [108 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 gpg-agent amd64 2.4.4-2ubuntu17 [227 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 gpgconf amd64 2.4.4-2ubuntu17 [103 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libnpth0t64 amd64 1.6-3.1build1 [8378 B] Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 gpgv amd64 2.4.4-2ubuntu17 [157 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 apt-utils amd64 2.7.14build2 [217 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 apt amd64 2.7.14build2 [1375 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 debconf-i18n all 1.5.86 [205 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 debconf all 1.5.86 [124 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.3-5ubuntu4 [67.6 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu3 [139 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libjson-c5 amd64 0.17-1build1 [35.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libuuid1 amd64 2.39.3-9ubuntu5 [35.2 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libfdisk1 amd64 2.39.3-9ubuntu5 [146 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 mount amd64 2.39.3-9ubuntu5 [118 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu4 [22.8 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B] Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-22.22 [1597 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu9 [73.7 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17build1 [89.9 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bsdutils amd64 1:2.39.3-9ubuntu5 [95.3 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 coreutils amd64 9.4-3ubuntu6 [1412 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 tar amd64 1.35+dfsg-3build1 [253 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.6ubuntu6 [1283 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 diffutils amd64 1:3.10-1build1 [177 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 findutils amd64 4.9.0-5build1 [298 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 grep amd64 3.11-4build1 [162 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gzip amd64 1.12-1ubuntu3 [98.8 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 hostname amd64 3.23+nmu2ubuntu2 [11.1 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 login amd64 1:4.13+dfsg1-4ubuntu3 [202 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu2 [188 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 sed amd64 4.9-2build1 [193 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 util-linux amd64 2.39.3-9ubuntu5 [1127 kB] Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 sysvinit-utils amd64 3.08-6ubuntu3 [34.2 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu4 [22.5 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu4 [222 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu4 [601 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu5 [64.7 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 uuid-runtime amd64 2.39.3-9ubuntu5 [33.1 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libattr1 amd64 1:2.5.2-1build1 [11.3 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmd0 amd64 1.1.0-2build1 [27.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsepol2 amd64 3.5-2build1 [303 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu3 [845 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu4 [17.0 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 mawk amd64 1.3.4.20240123-1build1 [127 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 sensible-utils all 0.0.22 [22.5 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 ca-certificates all 20240203 [159 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 tzdata all 2024a-2ubuntu1 [273 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bsdextrautils amd64 2.39.3-9ubuntu5 [73.6 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libip4tc2 amd64 1.8.10-3ubuntu2 [23.3 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 psmisc amd64 23.7-1build1 [179 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [267 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 advancecomp amd64 2.5-1build1 [182 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240330-1ubuntu2 [1172 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-23ubuntu3 [14.5 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu3 [2398 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240330-1ubuntu2 [147 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240330-1ubuntu2 [29.1 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240330-1ubuntu2 [10.4 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240330-1ubuntu2 [3020 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240330-1ubuntu2 [1310 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240330-1ubuntu2 [1629 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240330-1ubuntu2 [155 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-23ubuntu3 [479 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu3 [2687 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240330-1ubuntu2 [2731 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240330-1ubuntu2 [47.7 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-23ubuntu3 [1034 B] Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-23ubuntu3 [48.6 kB] Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libisl23 amd64 0.26-3build1 [680 kB] Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmpfr6 amd64 4.2.1-1build1 [355 kB] Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [21.9 MB] Get:182 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [12.5 MB] Get:183 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [11.2 MB] Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++ amd64 4:13.2.0-7ubuntu2 [1096 B] Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc amd64 4:13.2.0-7ubuntu2 [5016 B] Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp amd64 4:13.2.0-7ubuntu2 [22.4 kB] Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu2 [5400 B] Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu2 [1210 B] Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu2 [964 B] Get:190 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:191 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 patch amd64 2.7.6-7build3 [104 kB] Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 make amd64 4.3-4.1build2 [180 kB] Get:194 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 47 [12.4 kB] Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libfakeroot amd64 1.33-1build1 [32.4 kB] Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 fakeroot amd64 1.33-1build1 [67.2 kB] Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblockfile-bin amd64 1.17-1build3 [11.2 kB] Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblockfile1 amd64 1.17-1build3 [6840 B] Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 lockfile-progs amd64 0.1.19build2 [8522 B] Preconfiguring packages ... 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Unpacking systemd (255.4-1ubuntu7) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu7_amd64.deb ... 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(both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:amd64. (Reading database ... 15770 files and directories currently installed.) 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Preparing to unpack .../libreadline8t64_8.2-4build1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4build1) ... Preparing to unpack .../readline-common_8.2-4build1_all.deb ... Unpacking readline-common (8.2-4build1) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.4+20240113-1ubuntu2_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... 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Setting up libctf0:amd64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up libgprofng0:amd64 (2.42-4ubuntu2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19build2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:amd64 (8.2-4build1) ... Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu3) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:amd64 (2.39-0ubuntu8) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu3) ... Setting up binutils-x86-64-linux-gnu (2.42-4ubuntu2) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu2) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.1build1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... Setting up binutils (2.42-4ubuntu2) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu2) ... Setting up libnsl2:amd64 (1.3.0-3build3) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu2) ... Setting up libnss-nisplus:amd64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu2) ... Setting up libnsl-dev:amd64 (1.3.0-3build3) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu2) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up g++ (4:13.2.0-7ubuntu2) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15822 files and directories currently installed.) Purging configuration files for libssl3:amd64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28045395 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-28045395 --arch=amd64 --dist=noble-proposed --nolog -A python-biom-format_2.1.15.2-3build1.dsc Initiating build PACKAGEBUILD-28045395 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:39 UTC 2024 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-017.buildd +==============================================================================+ | python-biom-format 2.1.15.2-3build1 (amd64) Wed, 10 Apr 2024 17:16:14 +0000 | +==============================================================================+ Package: python-biom-format Version: 2.1.15.2-3build1 Source Version: 2.1.15.2-3build1 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28045395/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/python-biom-format-QWWuwl/resolver-ykLl8H' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biom-format_2.1.15.2-3build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-biom-format-QWWuwl/python-biom-format-2.1.15.2' with '<>' I: NOTICE: Log filtering will replace 'build/python-biom-format-QWWuwl' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [479 B] Get:5 copy:/<>/apt_archive ./ Packages [557 B] Fetched 1993 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl4t64 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc4 liblzf1 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7 libpipeline1 libpsl5t64 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libssh-4 libsub-override-perl libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db media-types netbase po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-brotli python3-certifi python3-chardet python3-click python3-colorama python3-contourpy python3-coverage python3-cycler python3-dateutil python3-decorator python3-dev python3-docutils python3-fonttools python3-fs python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-iniconfig python3-jinja2 python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pygments python3-pyparsing python3-pytest python3-pytest-cov python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-snowballstemmer python3-sphinx python3-sympy python3-tabulate python3-tk python3-tz python3-ufolib2 python3-urllib3 python3.12 python3.12-dev python3.12-minimal sgml-base sphinx-common tk8.6-blt2.5 unicode-data x11-common xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff low-memory-monitor libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-venv python-attr-doc python-coverage-doc python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python-pandas-doc python3-statsmodels python-pil-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax python3-lib2to3 python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended texlive-plain-generic texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.12-venv python3.12-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libjson-xs-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl libpaper-utils python3-bs4 python3-cssselect python3-html5lib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba python3-olefile isympy-common The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl4t64 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc4 liblzf1 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7 libpipeline1 libpsl5t64 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libssh-4 libsub-override-perl libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db media-types netbase po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-brotli python3-certifi python3-chardet python3-click python3-colorama python3-contourpy python3-coverage python3-cycler python3-dateutil python3-decorator python3-dev python3-docutils python3-fonttools python3-fs python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-iniconfig python3-jinja2 python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pygments python3-pyparsing python3-pytest python3-pytest-cov python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-snowballstemmer python3-sphinx python3-sympy python3-tabulate python3-tk python3-tz python3-ufolib2 python3-urllib3 python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy sgml-base sphinx-common tk8.6-blt2.5 unicode-data x11-common xml-core zlib1g-dev 0 upgraded, 186 newly installed, 0 to remove and 0 not upgraded. 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Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... Setting up libx11-6:amd64 (2:1.8.7-1build1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... Setting up libpython3-stdlib:amd64 (3.12.2-0ubuntu2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.4-1build2) ... Setting up python3 (3.12.2-0ubuntu2) ... Setting up libpython3.12-dev:amd64 (3.12.2-5ubuntu3) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up python3-markupsafe (2.1.5-1build2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (10.2.0-1build1) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.2-1ubuntu1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-snowballstemmer (2.2.0-4build1) ... Setting up python3-brotli (1.1.0-2build2) ... Setting up sphinx-common (7.2.6-6) ... Setting up python3-cycler (0.11.0-2) ... Setting up python3-kiwisolver (1.4.4-2build1) ... Setting up python3-idna (3.6-2) ... Setting up python3.12-dev (3.12.2-5ubuntu3) ... Setting up cython3 (3.0.8-1ubuntu3) ... Setting up python3-urllib3 (2.0.7-1) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-lxml:amd64 (5.1.0-1build2) ... Setting up python3-dateutil (2.8.2-3) ... Setting up libxss1:amd64 (1:1.2.3-1build3) ... Setting up python3-mpmath (1.2.1-3) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up libxft2:amd64 (2.3.6-1build1) ... Setting up libpython3-dev:amd64 (3.12.2-0ubuntu2) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up python3-babel (2.10.3-3build1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1build4) ... Setting up python3-pytest (7.4.4-1) ... Setting up python3-alabaster (0.7.12-1) ... Setting up libtk8.6:amd64 (8.6.14-1build1) ... Setting up python3-tabulate (0.8.10-1) ... Setting up python3-all (3.12.2-0ubuntu2) ... Setting up python3-coverage (7.4.4+dfsg1-0ubuntu2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up python3-pytest-cov (4.1.0-1) ... Setting up python3-click (8.1.6-2) ... Setting up python3-fs (2.4.16-3) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libpython3-all-dev:amd64 (3.12.2-0ubuntu2) ... Setting up python3-dev (3.12.2-0ubuntu2) ... Setting up python3-requests (2.31.0+dfsg-1ubuntu1) ... Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ... Setting up python3-contourpy (1.0.7-2build1) ... Setting up dh-python (6.20240401) ... Setting up python3-all-dev (3.12.2-0ubuntu2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... Setting up python3-scipy (1.11.4-6) ... Setting up blt (2.5.3+dfsg-7build1) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... Setting up python3-tk:amd64 (3.12.2-3ubuntu4) ... Setting up python3-pandas (2.1.4+dfsg-7) ... Setting up python3-pil.imagetk:amd64 (10.2.0-1build1) ... Setting up python3-h5py (3.10.0-1ubuntu3) ... Setting up python3-fonttools (4.46.0-1build2) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1ubuntu3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for systemd (255.4-1ubuntu7) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Setting up python3-numpydoc (1.6.0-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:39 UTC 2024 amd64 (x86_64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-22.22 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-biom-format Binary: python3-biom-format, python-biom-format-doc Architecture: any all Version: 2.1.15.2-3build1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://biom-format.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-biom-format Vcs-Git: https://salsa.debian.org/med-team/python-biom-format.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest , python3-pytest-cov Package-List: python-biom-format-doc deb doc optional arch=all 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python-biom-format_2.1.15.2-3build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying posix_shell.patch dpkg-source: info: applying adjust-pd-df-interaction-with-greater-than.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28045395 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28045395 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28045395 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.15.2-3build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<>/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<>/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<>/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx running clean removing '/<>/.pybuild/cpython3_3.12_biom-format/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<>/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<>/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<>/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # arch USE_CYTHON=true dh_auto_build pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/exception.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/__init__.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/util.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/parse.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/table.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/err.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_table.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_util.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/__init__.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_err.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_head.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/__init__.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/util.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_subsample.pyx -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_transform.pyx -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/assets creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables creating /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_data/bad_table.txt -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data running build_ext building 'biom._filter' extension creating build creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/biom x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/python-biom-format-2.1.15.2-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_filter.c -o build/temp.linux-x86_64-cpython-312/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:1214: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/python-biom-format-2.1.15.2-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-x86_64-cpython-312/biom/_filter.o -L/usr/lib/x86_64-linux-gnu -o /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-x86_64-linux-gnu.so building 'biom._transform' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/python-biom-format-2.1.15.2-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_transform.c -o build/temp.linux-x86_64-cpython-312/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:1214: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/python-biom-format-2.1.15.2-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-x86_64-cpython-312/biom/_transform.o -L/usr/lib/x86_64-linux-gnu -o /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-x86_64-linux-gnu.so building 'biom._subsample' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/python-biom-format-2.1.15.2-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_subsample.c -o build/temp.linux-x86_64-cpython-312/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1214: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/python-biom-format-2.1.15.2-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-x86_64-cpython-312/biom/_subsample.o -L/usr/lib/x86_64-linux-gnu -o /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-x86_64-linux-gnu.so # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v7.2.6 making output directory... done [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' WARNING: Failed to import biom. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 8%] BIOM_LICENSE writing output... [ 17%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 42%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 67%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 92%] documentation/table_objects writing output... [100%] index /<>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /<>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated /<>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /<>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated generating indices... done writing additional pages... search done copying images... [100%] _static/biom-format.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 8 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v7.2.6 making output directory... done [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' WARNING: Failed to import biom. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done build succeeded, 4 warnings. The manual pages are in build/man. make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.12 I: pybuild pybuild:308: cp -r /<>/examples /<>/.pybuild/cpython3_3.12_biom-format/build I: pybuild base:311: cd /<>/.pybuild/cpython3_3.12_biom-format/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 rootdir: /<>/.pybuild/cpython3_3.12_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-4.1.0 collected 376 items biom/tests/test_err.py ..................... [ 5%] biom/tests/test_parse.py ........................... [ 12%] biom/tests/test_table.py ............................................... [ 25%] ..sss................................................................... [ 44%] .....sss................................................................ [ 63%] ..................................................................... [ 81%] biom/tests/test_util.py .................... [ 87%] biom/tests/test_cli/test_add_metadata.py .... [ 88%] biom/tests/test_cli/test_show_install_info.py . [ 88%] biom/tests/test_cli/test_subset_table.py ..... [ 89%] biom/tests/test_cli/test_summarize_table.py .. [ 90%] biom/tests/test_cli/test_table_converter.py ...... [ 92%] biom/tests/test_cli/test_table_normalizer.py . [ 92%] biom/tests/test_cli/test_uc_processor.py ...... [ 93%] biom/tests/test_cli/test_validate_table.py ....................... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37 /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). EPOCH = datetime.datetime.utcfromtimestamp(0) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 370 passed, 6 skipped, 1 warning in 4.08s =================== rm -fr -- /tmp/dh-xdg-rundir-kI4OFFek create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install install -m0755 -d /<>/debian/tmp pybuild --install -i python{version} -p 3.12 --dest-dir /<>/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root /<>/debian/python3-biom-format running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /<>/debian/python3-biom-format creating /<>/debian/python3-biom-format/usr creating /<>/debian/python3-biom-format/usr/lib creating /<>/debian/python3-biom-format/usr/lib/python3.12 creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.pyx -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_table.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_util.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__init__.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_table.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/long_lines.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_util.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_err.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_parse.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/long_lines.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_parse.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__init__.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-312-pytest-7.4.4.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.json -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/no-contents.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/empty.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/__init__.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_err.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/exception.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-x86_64-linux-gnu.so -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/__init__.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/util.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/parse.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/err.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/table.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/exception.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-x86_64-linux-gnu.so -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/util.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_api.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_cli.sh -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/parse.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_summarizer.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_head.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_ids.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__init__.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/util.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_validator.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_ids.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_head.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_converter.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-312.pyc -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_normalizer.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_validator.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_exporter.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/util.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_converter.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_adder.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/uc_processor.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/installation_informer.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_subsetter.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/table.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.pyx -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.pyx -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-x86_64-linux-gnu.so -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /<>/.pybuild/cpython3_3.12_biom-format/build/biom/err.py -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /<>/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/README.md -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /<>/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /<>/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/stepwise -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /<>/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/nodeids -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /<>/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/.gitignore -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /<>/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /<>/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /<>/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /<>/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /<>/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /<>/.pybuild/cpython3_3.12_biom-format/build/examples/sam_md.txt -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /<>/.pybuild/cpython3_3.12_biom-format/build/examples/obs_md.txt -> /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_table.py to test_table.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_util.py to test_util.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/long_lines.py to long_lines.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_parse.py to test_parse.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_err.py to test_err.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/exception.py to exception.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/util.py to util.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/parse.py to parse.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_head.py to table_head.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_ids.py to table_ids.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_validator.py to table_validator.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/util.py to util.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_converter.py to table_converter.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/table.py to table.cpython-312.pyc byte-compiling /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/err.py to err.cpython-312.pyc running install_egg_info Copying biom_format.egg-info to /<>/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom_format-2.1.15.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /<>/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars find debian/python3-biom-format -name .coverage -delete make[1]: Leaving directory '/<>' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/<>' dh_installdocs --indep dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5_group_metadata.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples find debian -name "*.c" -delete find debian -name "*.pyx" -delete # move tests from Python3 package to examples package if [ ! -d biom/tests ] ; then \ mv `find debian/python*biom-format -name tests -type d` biom ; \ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi make[1]: Leaving directory '/<>' dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/man/man1/ install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240401 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:166: skipping package python-biom-format-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-biom-format, binary packages=['python3-biom-format'] D: dh_python3 dh_python3:204: processing package python3-biom-format... D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.12/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:246: removing dist-packages/.pytest_cache D: dh_python3 fs:335: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.15.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.15.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-biom-format D: dh_python3 pydist:173: trying to find dependency for click (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for h5py (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy>=1.9.2 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pandas>=0.20.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-click', 'python3:any', 'python3-h5py', 'python3-scipy', 'python3-numpy', 'python3 (>= 3.12~)', 'python3 (<< 3.13)', 'python3-pandas'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biom-format-doc.lintian-overrides debian/python-biom-format-doc/usr/share/lintian/overrides/python-biom-format-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1712769216 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc chmod a-x usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 chmod a-x usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 gzip -9nf usr/share/doc/python-biom-format-doc/changelog.Debian cd '/<>' cd '/<>' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug dh_strip -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=python3-biom-format/2.1.15.2-3build1 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so debugedit: debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 03c2138623948c077e8d7bd8dbaa1cdca8aea755 install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/03/c2138623948c077e8d7bd8dbaa1cdca8aea755.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/03/c2138623948c077e8d7bd8dbaa1cdca8aea755.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Jmq_s_kzUO/stripofcflh debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so chmod --reference debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/stripofcflh cat '/tmp/Jmq_s_kzUO/stripofcflh' > 'debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so' chmod --reference /tmp/Jmq_s_kzUO/stripofcflh debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/03/c2138623948c077e8d7bd8dbaa1cdca8aea755.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/objcopyM0dDbQ chmod --reference debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/objcopyM0dDbQ cat '/tmp/Jmq_s_kzUO/objcopyM0dDbQ' > 'debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so' chmod --reference /tmp/Jmq_s_kzUO/objcopyM0dDbQ debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biom-format/2.1.15.2-3build1 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so debugedit: debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f2490a5e0235f213ecbbf76ad36cca1a3e9f320a install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f2/490a5e0235f213ecbbf76ad36cca1a3e9f320a.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f2/490a5e0235f213ecbbf76ad36cca1a3e9f320a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Jmq_s_kzUO/strip6oNtf7 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so chmod --reference debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/strip6oNtf7 cat '/tmp/Jmq_s_kzUO/strip6oNtf7' > 'debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so' chmod --reference /tmp/Jmq_s_kzUO/strip6oNtf7 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f2/490a5e0235f213ecbbf76ad36cca1a3e9f320a.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/objcopykIDWdw chmod --reference debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/objcopykIDWdw cat '/tmp/Jmq_s_kzUO/objcopykIDWdw' > 'debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so' chmod --reference /tmp/Jmq_s_kzUO/objcopykIDWdw debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biom-format/2.1.15.2-3build1 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so debugedit: debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 33c6a191eda16644ea8e425f0d0cbf94aa024a43 install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/33/c6a191eda16644ea8e425f0d0cbf94aa024a43.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/33/c6a191eda16644ea8e425f0d0cbf94aa024a43.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Jmq_s_kzUO/strip4yqd09 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so chmod --reference debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/strip4yqd09 cat '/tmp/Jmq_s_kzUO/strip4yqd09' > 'debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so' chmod --reference /tmp/Jmq_s_kzUO/strip4yqd09 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/33/c6a191eda16644ea8e425f0d0cbf94aa024a43.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/objcopy2Q6Vg0 chmod --reference debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so /tmp/Jmq_s_kzUO/objcopy2Q6Vg0 cat '/tmp/Jmq_s_kzUO/objcopy2Q6Vg0' > 'debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so' chmod --reference /tmp/Jmq_s_kzUO/objcopy2Q6Vg0 debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biom-format/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym install -m0755 -d debian/.debhelper/python3-biom-format dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biom-format/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/DEBIAN echo misc:Depends= >> debian/python-biom-format-doc.substvars echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -Pdebian/python-biom-format-doc install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=03c2138623948c077e8d7bd8dbaa1cdca8aea755 33c6a191eda16644ea8e425f0d0cbf94aa024a43 f2490a5e0235f213ecbbf76ad36cca1a3e9f320a" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/DEBIAN install -m0755 -d debian/python3-biom-format/DEBIAN cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biom-format .. dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root debian/.debhelper/scratch-space/build-python3-biom-format INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-biom-format (in debian/python3-biom-format); do_strip: , oemstrip: pkgstriptranslations: processing python-biom-format-doc (in debian/python-biom-format-doc); do_strip: , oemstrip: pkgstriptranslations: processing python3-biom-format-dbgsym (in debian/.debhelper/python3-biom-format/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-biom-format/DEBIAN/control, package python3-biom-format, directory debian/python3-biom-format pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biom-format ... pkgstripfiles: processing control file: debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control, package python3-biom-format-dbgsym, directory debian/.debhelper/python3-biom-format/dbgsym-root pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biom-format-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-biom-format/python3-biom-format-dbgsym_2.1.15.2-3build1_amd64.deb'. dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.15.2-3build1_amd64.deb'. Renaming python3-biom-format-dbgsym_2.1.15.2-3build1_amd64.deb to python3-biom-format-dbgsym_2.1.15.2-3build1_amd64.ddeb mv debian/.debhelper/scratch-space/build-python3-biom-format/python3-biom-format-dbgsym_2.1.15.2-3build1_amd64.deb ../python3-biom-format-dbgsym_2.1.15.2-3build1_amd64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-biom-format-doc/DEBIAN/control, package python-biom-format-doc, directory debian/python-biom-format-doc pkgstripfiles: Disabled PNG optimization for -doc package python-biom-format-doc (to save build time) dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.15.2-3build1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.15.2-3build1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../python-biom-format_2.1.15.2-3build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-10T17:17:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-biom-format_2.1.15.2-3build1_amd64.changes: -------------------------------------------------- Format: 1.8 Date: Wed, 10 Apr 2024 17:13:36 +0000 Source: python-biom-format Binary: python-biom-format-doc python3-biom-format Built-For-Profiles: noudeb Architecture: all amd64 Version: 2.1.15.2-3build1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: python-biom-format-doc - documentation for BIOM format python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3) 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Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Wed, 10 Apr 2024 17:17:29 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu2), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3build1), bash (= 5.2.21-2ubuntu4), bash-completion (= 1:2.11-8), binutils (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), binutils-x86-64-linux-gnu (= 2.42-4ubuntu2), blt (= 2.5.3+dfsg-7build1), bsdextrautils (= 2.39.3-9ubuntu5), bsdutils (= 1:2.39.3-9ubuntu5), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3ubuntu6), cpp (= 4:13.2.0-7ubuntu2), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-x86-64-linux-gnu (= 13.2.0-23ubuntu3), cpp-x86-64-linux-gnu (= 4:13.2.0-7ubuntu2), cython3 (= 3.0.8-1ubuntu3), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build2), dh-autoreconf (= 20), dh-python (= 6.20240401), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1build1), docutils-common (= 0.20.1+dfsg-3), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), file (= 1:5.45-3build1), findutils (= 4.9.0-5build1), fontconfig-config (= 2.15.0-1.1ubuntu2), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lyx (= 2.4.0~RC3-1build3), g++ (= 4:13.2.0-7ubuntu2), g++-13 (= 13.2.0-23ubuntu3), g++-13-x86-64-linux-gnu (= 13.2.0-23ubuntu3), g++-x86-64-linux-gnu (= 4:13.2.0-7ubuntu2), gcc (= 4:13.2.0-7ubuntu2), gcc-13 (= 13.2.0-23ubuntu3), gcc-13-base (= 13.2.0-23ubuntu3), gcc-13-x86-64-linux-gnu (= 13.2.0-23ubuntu3), gcc-14-base (= 14-20240330-1ubuntu2), gcc-x86-64-linux-gnu (= 4:13.2.0-7ubuntu2), gettext (= 0.21-14ubuntu2), gettext-base (= 0.21-14ubuntu2), grep (= 3.11-4build1), groff-base (= 1.23.0-3build2), gzip (= 1.12-1ubuntu3), help2man (= 1.49.3), hostname (= 3.23+nmu2ubuntu2), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1build1), libaec0 (= 1.1.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1ubuntu2), libatomic1 (= 14-20240330-1ubuntu2), libattr1 (= 1:2.5.2-1build1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libbinutils (= 2.42-4ubuntu2), libblas3 (= 3.12.0-3build1), libblkid1 (= 2.39.3-9ubuntu5), libbrotli1 (= 1.1.0-2build2), libbsd0 (= 0.12.1-1build1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu2), libcc1-0 (= 14-20240330-1ubuntu2), libcom-err2 (= 1.47.0-2.4~exp1ubuntu4), libcrypt-dev (= 1:4.4.36-4build1), libcrypt1 (= 1:4.4.36-4build1), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libcurl4t64 (= 8.5.0-2ubuntu10), libdb5.3t64 (= 5.3.28+dfsg2-6build1), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate0 (= 1.19-1build1), libdpkg-perl (= 1.22.6ubuntu6), libdw1t64 (= 0.190-1.1build4), libelf1t64 (= 0.190-1.1build4), libexpat1 (= 2.6.1-2build1), libexpat1-dev (= 2.6.1-2build1), libffi8 (= 3.4.6-1build1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.15.0-1.1ubuntu2), libfreetype6 (= 2.13.2+dfsg-1build3), libfribidi0 (= 1.0.13-3build1), libgcc-13-dev (= 13.2.0-23ubuntu3), libgcc-s1 (= 14-20240330-1ubuntu2), libgcrypt20 (= 1.10.3-2build1), libgdbm-compat4t64 (= 1.23-5.1build1), libgdbm6t64 (= 1.23-5.1build1), libgfortran5 (= 14-20240330-1ubuntu2), libglib2.0-0 (= 2.80.0-6ubuntu1), libglib2.0-0t64 (= 2.80.0-6ubuntu1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu5), libgnutls30t64 (= 3.8.3-1.1ubuntu3), libgomp1 (= 14-20240330-1ubuntu2), libgpg-error0 (= 1.47-3build2), libgprofng0 (= 2.42-4ubuntu2), libgraphite2-3 (= 1.3.14-2build1), libgssapi-krb5-2 (= 1.20.1-6ubuntu2), libharfbuzz0b (= 8.3.0-2build2), libhdf5-103-1t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-100t64 (= 1.10.10+repack-3.1ubuntu4), libhogweed6t64 (= 3.9.1-2.2build1), libhwasan0 (= 14-20240330-1ubuntu2), libicu74 (= 74.2-1ubuntu3), libidn2-0 (= 2.3.7-2build1), libimagequant0 (= 2.18.0-1build1), libisl23 (= 0.26-3build1), libitm1 (= 14-20240330-1ubuntu2), libjansson4 (= 2.14-2build2), libjbig0 (= 2.1-6.1ubuntu2), libjpeg-turbo8 (= 2.1.5-2ubuntu2), libjpeg8 (= 8c-2ubuntu11), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-hotkeys (= 0~20130707+git2d51e3a9+dfsg-2ubuntu2), libjs-jquery-isonscreen (= 1.2.0-1.1), libjs-jquery-metadata (= 12-4), libjs-jquery-tablesorter (= 1:2.31.3+dfsg1-3), libjs-jquery-throttle-debounce (= 1.1+dfsg.1-2), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-sphinxdoc (= 7.2.6-6), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjson-perl (= 4.10000-1), libk5crypto3 (= 1.20.1-6ubuntu2), libkeyutils1 (= 1.6.3-3build1), libkrb5-3 (= 1.20.1-6ubuntu2), libkrb5support0 (= 1.20.1-6ubuntu2), liblapack3 (= 3.12.0-3build1), liblbfgsb0 (= 3.0+dfsg.4-1), liblcms2-2 (= 2.14-2build1), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu8), liblerc4 (= 4.0.0+ds-4ubuntu2), liblocale-gettext-perl (= 1.07-6ubuntu5), liblsan0 (= 14-20240330-1ubuntu2), liblz4-1 (= 1.9.4-1build1), liblzf1 (= 3.6-4), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2build1), libmount1 (= 2.39.3-9ubuntu5), libmpc3 (= 1.3.1-1build1), libmpfr6 (= 4.2.1-1build1), libncursesw6 (= 6.4+20240113-1ubuntu2), libnettle8t64 (= 3.9.1-2.2build1), libnghttp2-14 (= 1.59.0-1build2), libopenjp2-7 (= 2.5.0-2build3), libp11-kit0 (= 0.25.3-4ubuntu2), libpam-modules (= 1.5.3-5ubuntu4), libpam-modules-bin (= 1.5.3-5ubuntu4), libpam-runtime (= 1.5.3-5ubuntu4), libpam0g (= 1.5.3-5ubuntu4), libpcre2-8-0 (= 10.42-4ubuntu2), libperl5.38t64 (= 5.38.2-3.2build2), libpipeline1 (= 1.5.7-2), libpng16-16t64 (= 1.6.43-5build1), libpsl5t64 (= 0.21.2-1.1build1), libpython3-all-dev (= 3.12.2-0ubuntu2), libpython3-dev (= 3.12.2-0ubuntu2), libpython3-stdlib (= 3.12.2-0ubuntu2), libpython3.12-dev (= 3.12.2-5ubuntu3), libpython3.12-minimal (= 3.12.2-5ubuntu3), libpython3.12-stdlib (= 3.12.2-5ubuntu3), libpython3.12t64 (= 3.12.2-5ubuntu3), libqhull-r8.0 (= 2020.2-6), libquadmath0 (= 14-20240330-1ubuntu2), libraqm0 (= 0.10.1-1build1), libreadline8t64 (= 8.2-4build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu3), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu3), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsframe1 (= 2.42-4ubuntu2), libsharpyuv0 (= 1.3.2-0.4build3), libsmartcols1 (= 2.39.3-9ubuntu5), libsqlite3-0 (= 3.45.1-1ubuntu2), libssh-4 (= 0.10.6-2build2), libssl3t64 (= 3.0.13-0ubuntu3), libstdc++-13-dev (= 13.2.0-23ubuntu3), libstdc++6 (= 14-20240330-1ubuntu2), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu7), libsz2 (= 1.1.2-1), libtasn1-6 (= 4.19.0-3build1), libtcl8.6 (= 8.6.14+dfsg-1build1), libtiff6 (= 4.5.1+git230720-4ubuntu2), libtinfo6 (= 6.4+20240113-1ubuntu2), libtk8.6 (= 8.6.14-1build1), libtool (= 2.4.7-7build1), libtsan2 (= 14-20240330-1ubuntu2), libubsan1 (= 14-20240330-1ubuntu2), libuchardet0 (= 0.0.8-1build1), libudev1 (= 255.4-1ubuntu7), libunistring5 (= 1.1-2build1), libuuid1 (= 2.39.3-9ubuntu5), libwebp7 (= 1.3.2-0.4build3), libwebpdemux2 (= 1.3.2-0.4build3), libwebpmux3 (= 1.3.2-0.4build3), libx11-6 (= 2:1.8.7-1build1), libx11-data (= 2:1.8.7-1build1), libxau6 (= 1:1.0.9-1build6), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu6), libxext6 (= 2:1.3.4-1build2), libxft2 (= 2.3.6-1build1), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libxrender1 (= 1:0.9.10-1.1build1), libxslt1.1 (= 1.1.39-0exp1build1), libxss1 (= 1:1.2.3-1build3), libzstd1 (= 1.5.5+dfsg2-2build1), linux-libc-dev (= 6.8.0-22.22), login (= 1:4.13+dfsg1-4ubuntu3), lto-disabled-list (= 47), m4 (= 1.4.19-4build1), make (= 4.3-4.1build2), man-db (= 2.12.0-4build2), mawk (= 1.3.4.20240123-1build1), media-types (= 10.1.0), ncurses-base (= 6.4+20240113-1ubuntu2), ncurses-bin (= 6.4+20240113-1ubuntu2), netbase (= 6.4), openssl (= 3.0.13-0ubuntu3), patch (= 2.7.6-7build3), perl (= 5.38.2-3.2build2), perl-base (= 5.38.2-3.2build2), perl-modules-5.38 (= 5.38.2-3.2build2), po-debconf (= 1.0.21+nmu1), python-babel-localedata (= 2.10.3-3build1), python-matplotlib-data (= 3.6.3-1ubuntu3), python3 (= 3.12.2-0ubuntu2), python3-alabaster (= 0.7.12-1), python3-all (= 3.12.2-0ubuntu2), python3-all-dev (= 3.12.2-0ubuntu2), python3-appdirs (= 1.4.4-4), python3-attr (= 23.2.0-2), python3-babel (= 2.10.3-3build1), python3-brotli (= 1.1.0-2build2), python3-certifi (= 2023.11.17-1), python3-chardet (= 5.2.0+dfsg-1), python3-click (= 8.1.6-2), python3-colorama (= 0.4.6-4), python3-contourpy (= 1.0.7-2build1), python3-coverage (= 7.4.4+dfsg1-0ubuntu2), python3-cycler (= 0.11.0-2), python3-dateutil (= 2.8.2-3), python3-decorator (= 5.1.1-5), python3-dev (= 3.12.2-0ubuntu2), python3-docutils (= 0.20.1+dfsg-3), python3-fonttools (= 4.46.0-1build2), python3-fs (= 2.4.16-3), python3-h5py (= 3.10.0-1ubuntu3), python3-h5py-serial (= 3.10.0-1ubuntu3), python3-idna (= 3.6-2), python3-imagesize (= 1.4.1-1), python3-iniconfig (= 1.1.1-2), python3-jinja2 (= 3.1.2-1ubuntu1), python3-kiwisolver (= 1.4.4-2build1), python3-lxml (= 5.1.0-1build2), python3-lz4 (= 4.0.2+dfsg-1build4), python3-markupsafe (= 2.1.5-1build2), python3-matplotlib (= 3.6.3-1ubuntu3), python3-minimal (= 3.12.2-0ubuntu2), python3-mpmath (= 1.2.1-3), python3-numpy (= 1:1.26.4+ds-6ubuntu1), python3-numpydoc (= 1.6.0-2), python3-packaging (= 24.0-1), python3-pandas (= 2.1.4+dfsg-7), python3-pandas-lib (= 2.1.4+dfsg-7), python3-pil (= 10.2.0-1build1), python3-pil.imagetk (= 10.2.0-1build1), python3-pkg-resources (= 68.1.2-2ubuntu1), python3-pluggy (= 1.4.0-1), python3-pygments (= 2.17.2+dfsg-1), python3-pyparsing (= 3.1.1-1), python3-pytest (= 7.4.4-1), python3-pytest-cov (= 4.1.0-1), python3-requests (= 2.31.0+dfsg-1ubuntu1), python3-roman (= 3.3-3), python3-scipy (= 1.11.4-6), python3-setuptools (= 68.1.2-2ubuntu1), python3-six (= 1.16.0-4), python3-snowballstemmer (= 2.2.0-4build1), python3-sphinx (= 7.2.6-6), python3-sympy (= 1.12-7), python3-tabulate (= 0.8.10-1), python3-tk (= 3.12.2-3ubuntu4), python3-tz (= 2024.1-2), python3-ufolib2 (= 0.16.0+dfsg1-1), python3-urllib3 (= 2.0.7-1), python3.12 (= 3.12.2-5ubuntu3), python3.12-dev (= 3.12.2-5ubuntu3), python3.12-minimal (= 3.12.2-5ubuntu3), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu7), sed (= 4.9-2build1), sensible-utils (= 0.0.22), sgml-base (= 1.31), sphinx-common (= 7.2.6-6), sysvinit-utils (= 3.08-6ubuntu3), tar (= 1.35+dfsg-3build1), tk8.6-blt2.5 (= 2.5.3+dfsg-7build1), tzdata (= 2024a-2ubuntu1), unicode-data (= 15.1.0-1), util-linux (= 2.39.3-9ubuntu5), x11-common (= 1:7.7+23ubuntu3), xml-core (= 0.19), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1712769216" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python-biom-format-doc_2.1.15.2-3build1_all.deb ----------------------------------------------- new Debian package, version 2.0. size 57248 bytes: control archive=2279 bytes. 1702 bytes, 34 lines control 4770 bytes, 45 lines md5sums Package: python-biom-format-doc Source: python-biom-format Version: 2.1.15.2-3build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 477 Depends: libjs-sphinxdoc (>= 7.2.2) Section: doc Priority: optional Multi-Arch: foreign Homepage: https://biom-format.org/ Description: documentation for BIOM format The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the documentation for the BIOM format Python package. drwxr-xr-x root/root 0 2024-04-10 17:13 ./ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/doc-base/ -rw-r--r-- root/root 624 2024-02-04 19:04 ./usr/share/doc-base/python-biom-format-doc.python-biom-format drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/doc/python-biom-format-doc/ -rw-r--r-- root/root 1934 2024-04-10 17:13 ./usr/share/doc/python-biom-format-doc/changelog.Debian.gz -rw-r--r-- root/root 1613 2024-02-04 19:04 ./usr/share/doc/python-biom-format-doc/copyright drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/doc/python-biom-format-doc/html/ -rw-r--r-- root/root 12118 2024-04-10 17:13 ./usr/share/doc/python-biom-format-doc/html/BIOM_LICENSE.html drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/doc/python-biom-format-doc/html/_images/ 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./usr/share/doc/python-biom-format-doc/html/objects.inv -rw-r--r-- root/root 2420 2024-04-10 17:13 ./usr/share/doc/python-biom-format-doc/html/search.html -rw-r--r-- root/root 20045 2024-04-10 17:13 ./usr/share/doc/python-biom-format-doc/html/searchindex.js drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 130 2024-02-04 19:04 ./usr/share/lintian/overrides/python-biom-format-doc python3-biom-format_2.1.15.2-3build1_amd64.deb ---------------------------------------------- new Debian package, version 2.0. size 137420 bytes: control archive=2728 bytes. 1919 bytes, 35 lines control 4554 bytes, 49 lines md5sums 285 bytes, 12 lines * postinst #!/bin/sh 398 bytes, 12 lines * prerm #!/bin/sh Package: python3-biom-format Source: python-biom-format Version: 2.1.15.2-3build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 860 Depends: python3-h5py, python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3 (<< 3.13), python3 (>= 3.12~), python3-click, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4) Suggests: python-biom-format-doc Provides: biom-format-tools Section: python Priority: optional Homepage: https://biom-format.org/ Description: Biological Observation Matrix (BIOM) format (Python 3) The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the BIOM format library for the Python 3 interpreter. drwxr-xr-x root/root 0 2024-04-10 17:13 ./ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/bin/ -rwxr-xr-x root/root 967 2024-04-10 17:13 ./usr/bin/biom drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/lib/python3/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/lib/python3/dist-packages/biom/ -rw-r--r-- root/root 3007 2024-04-10 17:13 ./usr/lib/python3/dist-packages/biom/__init__.py -rw-r--r-- root/root 106736 2024-04-10 17:13 ./usr/lib/python3/dist-packages/biom/_filter.cpython-312-x86_64-linux-gnu.so -rw-r--r-- root/root 82080 2024-04-10 17:13 ./usr/lib/python3/dist-packages/biom/_subsample.cpython-312-x86_64-linux-gnu.so -rw-r--r-- root/root 65568 2024-04-10 17:13 ./usr/lib/python3/dist-packages/biom/_transform.cpython-312-x86_64-linux-gnu.so 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./usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -rw-r--r-- root/root 244 2023-05-09 00:00 ./usr/share/doc/python3-biom-format/examples/sam_md.txt -rw-r--r-- root/root 979 2024-02-04 19:04 ./usr/share/doc/python3-biom-format/run-unit-test drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-10 17:13 ./usr/share/man/man1/ -rw-r--r-- root/root 620 2024-04-10 17:13 ./usr/share/man/man1/biom.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 115220 Build-Time: 34 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 42 Job: python-biom-format_2.1.15.2-3build1.dsc Machine Architecture: amd64 Package: python-biom-format Package-Time: 76 Source-Version: 2.1.15.2-3build1 Space: 115220 Status: successful Version: 2.1.15.2-3build1 -------------------------------------------------------------------------------- Finished at 2024-04-10T17:17:30Z Build needed 00:01:16, 115220k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28045395 Scanning for processes to kill in build PACKAGEBUILD-28045395