https://launchpad.net/ubuntu/+source/python-biopython/1.79+dfsg-1/+build/22337888 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-001 4.15.0-161-generic #169-Ubuntu SMP Fri Oct 15 13:39:40 UTC 2021 s390x Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Oct 06:10:40 ntpdate[1844]: adjust time server 10.211.37.1 offset -0.000109 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22337888 --image-type chroot /home/buildd/filecache-default/63391afefe2c3c1f68eb13dcf1e745f5d0398db6 Creating target for build PACKAGEBUILD-22337888 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22337888 Starting target for build PACKAGEBUILD-22337888 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22337888 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22337888 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22337888 Updating target for build PACKAGEBUILD-22337888 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main s390x Packages [1335 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe s390x Packages [12.5 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5506 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x Packages [340 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [115 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x Packages [1750 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [888 kB] Fetched 23.4 MB in 7s (3596 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bsdutils ca-certificates cpp-11 dash debconf debianutils g++-11 gcc-11 gcc-11-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libblkid1 libcc1-0 libgcc-11-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libisl23 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libseccomp2 libselinux1 libsmartcols1 libsqlite3-0 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libubsan1 libuuid1 libzstd1 lockfile-progs make mount ncurses-base ncurses-bin sensible-utils tzdata util-linux 54 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 156 MB of archives. After this operation, 603 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x bsdutils s390x 1:2.36.1-8ubuntu2 [82.0 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x debianutils s390x 5.5-1 [77.5 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x debconf all 1.5.78 [126 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x dash s390x 0.5.11+git20210120+802ebd4-2 [92.6 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libncursesw6 s390x 6.2+20210905-1 [142 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libncurses6 s390x 6.2+20210905-1 [109 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libtinfo6 s390x 6.2+20210905-1 [105 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x ncurses-bin s390x 6.2+20210905-1 [182 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x util-linux s390x 2.36.1-8ubuntu2 [1008 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x ncurses-base all 6.2+20210905-1 [19.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libcc1-0 s390x 11.2.0-10ubuntu1 [52.8 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gcc-11-base s390x 11.2.0-10ubuntu1 [21.0 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgcc-s1 s390x 11.2.0-10ubuntu1 [28.4 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgomp1 s390x 11.2.0-10ubuntu1 [113 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libitm1 s390x 11.2.0-10ubuntu1 [29.7 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libatomic1 s390x 11.2.0-10ubuntu1 [9018 B] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libasan6 s390x 11.2.0-10ubuntu1 [2247 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libubsan1 s390x 11.2.0-10ubuntu1 [911 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x g++-11 s390x 11.2.0-10ubuntu1 [47.7 MB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libstdc++-11-dev s390x 11.2.0-10ubuntu1 [2078 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgcc-11-dev s390x 11.2.0-10ubuntu1 [829 kB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gcc-11 s390x 11.2.0-10ubuntu1 [49.8 MB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x cpp-11 s390x 11.2.0-10ubuntu1 [43.2 MB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libstdc++6 s390x 11.2.0-10ubuntu1 [689 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libisl23 s390x 0.24-2 [699 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libmpc3 s390x 1.2.1-1 [47.6 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libzstd1 s390x 1.4.8+dfsg-3 [317 kB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libapt-pkg6.0 s390x 2.3.11 [869 kB] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libseccomp2 s390x 2.5.1-1ubuntu2 [47.9 kB] Get:30 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x apt s390x 2.3.11 [1366 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x mount s390x 2.36.1-8ubuntu2 [110 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libattr1 s390x 1:2.5.1-1 [13.3 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libblkid1 s390x 2.36.1-8ubuntu2 [95.7 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgpg-error0 s390x 1.42-3 [67.6 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libk5crypto3 s390x 1.18.3-7 [88.3 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libkrb5support0 s390x 1.18.3-7 [32.2 kB] Get:37 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libkrb5-3 s390x 1.18.3-7 [347 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgssapi-krb5-2 s390x 1.18.3-7 [138 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libselinux1 s390x 3.1-3build3 [74.2 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libmount1 s390x 2.36.1-8ubuntu2 [114 kB] Get:41 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libsmartcols1 s390x 2.36.1-8ubuntu2 [48.8 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libuuid1 s390x 2.36.1-8ubuntu2 [23.3 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libidn2-0 s390x 2.3.2-2 [66.3 kB] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libp11-kit0 s390x 0.24.0-5 [258 kB] Get:45 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libtasn1-6 s390x 4.17.0-2 [43.9 kB] Get:46 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x sensible-utils all 0.0.17 [20.1 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x ca-certificates all 20211016 [148 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main s390x libapparmor1 s390x 3.0.3-0ubuntu2 [37.3 kB] Get:49 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libsqlite3-0 s390x 3.36.0-2 [630 kB] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x tzdata all 2021e-1ubuntu1 [343 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgdbm6 s390x 1.22-1 [35.3 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgdbm-compat4 s390x 1.22-1 [6554 B] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x lockfile-progs s390x 0.1.19 [9654 B] Get:54 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x make s390x 4.3-4ubuntu2 [181 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 156 MB in 7s (23.1 MB/s) (Reading database ... 13030 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36.1-8ubuntu2_s390x.deb ... Unpacking bsdutils (1:2.36.1-8ubuntu2) over (1:2.36.1-8ubuntu1) ... Setting up bsdutils (1:2.36.1-8ubuntu2) ... (Reading database ... 13030 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_s390x.deb ... Unpacking debianutils (5.5-1) over (4.11.2build1) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... 13025 files and directories currently installed.) Preparing to unpack .../debconf_1.5.78_all.deb ... Unpacking debconf (1.5.78) over (1.5.77) ... Setting up debconf (1.5.78) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210120+802ebd4-2_s390x.deb ... Unpacking dash (0.5.11+git20210120+802ebd4-2) over (0.5.11+git20210120+802ebd4-1build1) ... Setting up dash (0.5.11+git20210120+802ebd4-2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2+20210905-1_s390x.deb ... Unpacking libncursesw6:s390x (6.2+20210905-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libncurses6_6.2+20210905-1_s390x.deb ... Unpacking libncurses6:s390x (6.2+20210905-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libtinfo6_6.2+20210905-1_s390x.deb ... Unpacking libtinfo6:s390x (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up libtinfo6:s390x (6.2+20210905-1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20210905-1_s390x.deb ... Unpacking ncurses-bin (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up ncurses-bin (6.2+20210905-1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-8ubuntu2_s390x.deb ... Unpacking util-linux (2.36.1-8ubuntu2) over (2.36.1-8ubuntu1) ... Setting up util-linux (2.36.1-8ubuntu2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20210905-1_all.deb ... Unpacking ncurses-base (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up ncurses-base (6.2+20210905-1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libcc1-0_11.2.0-10ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../gcc-11-base_11.2.0-10ubuntu1_s390x.deb ... Unpacking gcc-11-base:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up gcc-11-base:s390x (11.2.0-10ubuntu1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libgcc-s1:s390x (11.2.0-10ubuntu1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../00-libgomp1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../01-libitm1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libitm1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../02-libatomic1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../03-libasan6_11.2.0-10ubuntu1_s390x.deb ... Unpacking libasan6:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../04-libubsan1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libubsan1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../05-g++-11_11.2.0-10ubuntu1_s390x.deb ... Unpacking g++-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../06-libstdc++-11-dev_11.2.0-10ubuntu1_s390x.deb ... Unpacking libstdc++-11-dev:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../07-libgcc-11-dev_11.2.0-10ubuntu1_s390x.deb ... Unpacking libgcc-11-dev:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../08-gcc-11_11.2.0-10ubuntu1_s390x.deb ... Unpacking gcc-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../09-cpp-11_11.2.0-10ubuntu1_s390x.deb ... Unpacking cpp-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../10-libstdc++6_11.2.0-10ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libstdc++6:s390x (11.2.0-10ubuntu1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libisl23_0.24-2_s390x.deb ... Unpacking libisl23:s390x (0.24-2) over (0.24-1build1) ... Preparing to unpack .../libmpc3_1.2.1-1_s390x.deb ... Unpacking libmpc3:s390x (1.2.1-1) over (1.2.0-1build2) ... Preparing to unpack .../libzstd1_1.4.8+dfsg-3_s390x.deb ... Unpacking libzstd1:s390x (1.4.8+dfsg-3) over (1.4.8+dfsg-2.1build1) ... Setting up libzstd1:s390x (1.4.8+dfsg-3) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.11_s390x.deb ... Unpacking libapt-pkg6.0:s390x (2.3.11) over (2.3.9) ... Setting up libapt-pkg6.0:s390x (2.3.11) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.1-1ubuntu2_s390x.deb ... Unpacking libseccomp2:s390x (2.5.1-1ubuntu2) over (2.5.1-1ubuntu1) ... Setting up libseccomp2:s390x (2.5.1-1ubuntu2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.11_s390x.deb ... Unpacking apt (2.3.11) over (2.3.9) ... Setting up apt (2.3.11) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-8ubuntu2_s390x.deb ... Unpacking mount (2.36.1-8ubuntu2) over (2.36.1-8ubuntu1) ... Preparing to unpack .../libattr1_1%3a2.5.1-1_s390x.deb ... Unpacking libattr1:s390x (1:2.5.1-1) over (1:2.4.48-6build2) ... Setting up libattr1:s390x (1:2.5.1-1) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libblkid1_2.36.1-8ubuntu2_s390x.deb ... Unpacking libblkid1:s390x (2.36.1-8ubuntu2) over (2.36.1-8ubuntu1) ... Setting up libblkid1:s390x (2.36.1-8ubuntu2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.42-3_s390x.deb ... Unpacking libgpg-error0:s390x (1.42-3) over (1.38-2build2) ... Setting up libgpg-error0:s390x (1.42-3) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.18.3-7_s390x.deb ... Unpacking libk5crypto3:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libk5crypto3:s390x (1.18.3-7) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.18.3-7_s390x.deb ... Unpacking libkrb5support0:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libkrb5support0:s390x (1.18.3-7) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libkrb5-3_1.18.3-7_s390x.deb ... Unpacking libkrb5-3:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libkrb5-3:s390x (1.18.3-7) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.18.3-7_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libgssapi-krb5-2:s390x (1.18.3-7) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-3build3_s390x.deb ... Unpacking libselinux1:s390x (3.1-3build3) over (3.1-3build2) ... Setting up libselinux1:s390x (3.1-3build3) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-8ubuntu2_s390x.deb ... Unpacking libmount1:s390x (2.36.1-8ubuntu2) over (2.36.1-8ubuntu1) ... Setting up libmount1:s390x (2.36.1-8ubuntu2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-8ubuntu2_s390x.deb ... Unpacking libsmartcols1:s390x (2.36.1-8ubuntu2) over (2.36.1-8ubuntu1) ... Setting up libsmartcols1:s390x (2.36.1-8ubuntu2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-8ubuntu2_s390x.deb ... Unpacking libuuid1:s390x (2.36.1-8ubuntu2) over (2.36.1-8ubuntu1) ... Setting up libuuid1:s390x (2.36.1-8ubuntu2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.2-2_s390x.deb ... Unpacking libidn2-0:s390x (2.3.2-2) over (2.3.1-1build1) ... Setting up libidn2-0:s390x (2.3.2-2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.0-5_s390x.deb ... Unpacking libp11-kit0:s390x (0.24.0-5) over (0.23.22-1build1) ... Setting up libp11-kit0:s390x (0.24.0-5) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.17.0-2_s390x.deb ... Unpacking libtasn1-6:s390x (4.17.0-2) over (4.16.0-2build1) ... Setting up libtasn1-6:s390x (4.17.0-2) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../0-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) over (0.0.14) ... Preparing to unpack .../1-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) over (20210119ubuntu1) ... Preparing to unpack .../2-libapparmor1_3.0.3-0ubuntu2_s390x.deb ... Unpacking libapparmor1:s390x (3.0.3-0ubuntu2) over (3.0.3-0ubuntu1) ... Preparing to unpack .../3-libsqlite3-0_3.36.0-2_s390x.deb ... Unpacking libsqlite3-0:s390x (3.36.0-2) over (3.35.5-1) ... Preparing to unpack .../4-tzdata_2021e-1ubuntu1_all.deb ... Unpacking tzdata (2021e-1ubuntu1) over (2021a-2ubuntu1) ... Preparing to unpack .../5-libgdbm6_1.22-1_s390x.deb ... Unpacking libgdbm6:s390x (1.22-1) over (1.19-2build1) ... Preparing to unpack .../6-libgdbm-compat4_1.22-1_s390x.deb ... Unpacking libgdbm-compat4:s390x (1.22-1) over (1.19-2build1) ... Preparing to unpack .../7-lockfile-progs_0.1.19_s390x.deb ... Unpacking lockfile-progs (0.1.19) over (0.1.18build1) ... Preparing to unpack .../8-make_4.3-4ubuntu2_s390x.deb ... Unpacking make (4.3-4ubuntu2) over (4.3-4ubuntu1) ... Setting up libapparmor1:s390x (3.0.3-0ubuntu2) ... Setting up libsqlite3-0:s390x (3.36.0-2) ... Setting up libgomp1:s390x (11.2.0-10ubuntu1) ... Setting up libasan6:s390x (11.2.0-10ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Oct 26 06:11:06 UTC 2021. Universal Time is now: Tue Oct 26 06:11:06 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:s390x (6.2+20210905-1) ... Setting up libmpc3:s390x (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:s390x (11.2.0-10ubuntu1) ... Setting up libncursesw6:s390x (6.2+20210905-1) ... Setting up libubsan1:s390x (11.2.0-10ubuntu1) ... Setting up mount (2.36.1-8ubuntu2) ... Setting up sensible-utils (0.0.17) ... Setting up libisl23:s390x (0.24-2) ... Setting up libcc1-0:s390x (11.2.0-10ubuntu1) ... Setting up libitm1:s390x (11.2.0-10ubuntu1) ... Setting up libgdbm6:s390x (1.22-1) ... Setting up cpp-11 (11.2.0-10ubuntu1) ... Setting up libgdbm-compat4:s390x (1.22-1) ... Setting up libgcc-11-dev:s390x (11.2.0-10ubuntu1) ... Setting up gcc-11 (11.2.0-10ubuntu1) ... Setting up libstdc++-11-dev:s390x (11.2.0-10ubuntu1) ... Setting up g++-11 (11.2.0-10ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22337888 s390x jammy-proposed -c chroot:build-PACKAGEBUILD-22337888 --arch=s390x --dist=jammy-proposed --nolog python-biopython_1.79+dfsg-1.dsc Initiating build PACKAGEBUILD-22337888 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-161-generic #169-Ubuntu SMP Fri Oct 15 13:39:40 UTC 2021 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-001.buildd +==============================================================================+ | python-biopython 1.79+dfsg-1 (s390x) Tue, 26 Oct 2021 06:11:08 +0000 | +==============================================================================+ Package: python-biopython Version: 1.79+dfsg-1 Source Version: 1.79+dfsg-1 Distribution: jammy-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22337888/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biopython_1.79+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-biopython-la783R/python-biopython-1.79+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-la783R' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-xKEEyS/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-xKEEyS/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xKEEyS/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-xKEEyS/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xKEEyS/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-xKEEyS/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-xKEEyS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13034 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, samtools, t-coffee, wise Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, samtools, t-coffee, wise dpkg-deb: building package 'sbuild-build-depends-python-biopython-dummy' in '/<>/resolver-xKEEyS/apt_archive/sbuild-build-depends-python-biopython-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biopython-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-xKEEyS/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xKEEyS/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xKEEyS/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xKEEyS/apt_archive ./ Sources [778 B] Get:5 copy:/<>/resolver-xKEEyS/apt_archive ./ Packages [801 B] Fetched 2542 B in 0s (0 B/s) Reading package lists... Reading package lists... Install python-biopython build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libbrotli1 libbsd0 libcairo2 libcifpp1 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libice6 libicu67 libidn11 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-isodate python3-kiwisolver python3-lib2to3 python3-linecache2 python3-matplotlib python3-minimal python3-mmtf python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-traceback2 python3-unittest2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal samtools t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-bitstream-vera ucf wise wise-data x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc clustalx seaview dh-make flit python3-toml emboss-doc emboss-test embassy bison flex-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff hevea-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libgd-tools libjs-jquery-ui-docs liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser phylip-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra python3-doc python3-tk python3-venv python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils ttf-staypuft default-mysql-server | virtual-mysql-server python-networkx-doc python3-gdal python3-pydot python3-pygraphviz gfortran python-numpy-doc python3-numpy-dbg python3-pytest python-pil-doc python-psycopg2-doc python-pygments-doc python-pyparsing-doc python-rdflib-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc cwltool boxshade t-coffee-examples perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex wise-doc Recommended packages: primer3 libfl-dev curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev blast2 libwww-perl lynx ruby libmail-sendmail-perl python3-tk python3-yaml python3-olefile python3-sparqlwrapper python3-html5lib amap-align dialign-tx fsa kalign libsoap-lite-perl libxml-simple-perl mustang poa proda tm-align lmodern dvisvgm tex-gyre tipa texlive-plain-generic tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libbrotli1 libbsd0 libcairo2 libcifpp1 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libice6 libicu67 libidn11 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-isodate python3-kiwisolver python3-lib2to3 python3-linecache2 python3-matplotlib python3-minimal python3-mmtf python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-traceback2 python3-unittest2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal samtools sbuild-build-depends-python-biopython-dummy t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-bitstream-vera ucf wise wise-data x11-common xdg-utils zlib1g-dev 0 upgraded, 230 newly installed, 0 to remove and 0 not upgraded. Need to get 278 MB of archives. After this operation, 1349 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xKEEyS/apt_archive ./ sbuild-build-depends-python-biopython-dummy 0.invalid.0 [882 B] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpython3.9-minimal s390x 3.9.7-4 [779 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libexpat1 s390x 2.4.1-3 [85.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3.9-minimal s390x 3.9.7-4 [1985 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-minimal s390x 3.9.4-1ubuntu2 [24.6 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main s390x media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main s390x mailcap all 3.70ubuntu1 [23.7 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main s390x mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu jammy/main s390x libmpdec3 s390x 2.5.1-2build1 [90.8 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpython3.9-stdlib s390x 3.9.7-4 [1776 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3.9 s390x 3.9.7-4 [433 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpython3-stdlib s390x 3.9.4-1ubuntu2 [7186 B] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3 s390x 3.9.4-1ubuntu2 [22.8 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x bsdextrautils s390x 2.36.1-8ubuntu2 [75.6 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main s390x libuchardet0 s390x 0.0.7-1build1 [76.1 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main s390x groff-base s390x 1.22.4-7 [926 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main s390x libpipeline1 s390x 1.5.3-1build1 [23.0 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main s390x man-db s390x 2.9.4-2build1 [1177 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main s390x libsigsegv2 s390x 2.13-1ubuntu2 [14.6 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main s390x m4 s390x 1.4.18-5ubuntu1 [197 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main s390x flex s390x 2.6.4-8build1 [302 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main s390x poppler-data all 0.4.11-1 [2171 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main s390x libpython3.10-minimal s390x 3.10.0-3 [797 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main s390x python3.10-minimal s390x 3.10.0-3 [1997 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main s390x ucf all 3.0043 [56.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x tex-common all 6.17 [33.7 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libmd0 s390x 1.0.4-1 [22.9 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main s390x libbsd0 s390x 0.11.3-1ubuntu3 [45.3 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main s390x libdbus-1-3 s390x 1.12.20-2ubuntu2 [185 kB] Get:30 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libelf1 s390x 0.185-2 [55.1 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main s390x libfribidi0 s390x 1.0.8-2ubuntu2 [26.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libglib2.0-0 s390x 2.70.0-3 [1380 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main s390x libicu67 s390x 67.1-7ubuntu1 [10.0 MB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libxml2 s390x 2.9.12+dfsg-5 [711 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-pkg-resources all 58.2.0-1 [130 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main s390x libmagic-mgc s390x 1:5.39-3build1 [237 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main s390x libmagic1 s390x 1:5.39-3build1 [87.7 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main s390x file s390x 1:5.39-3build1 [24.5 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main s390x gettext-base s390x 0.21-4ubuntu3 [38.4 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libedit2 s390x 3.1-20210910-1 [95.2 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main s390x liblmdb0 s390x 0.9.24-1build1 [48.6 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main s390x libpsl5 s390x 0.21.0-1.2build1 [57.7 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main s390x libxau6 s390x 1:1.0.9-1build4 [7528 B] Get:44 http://ftpmaster.internal/ubuntu jammy/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu4 [10.9 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main s390x libxcb1 s390x 1.14-3ubuntu2 [47.8 kB] Get:46 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libx11-data all 2:1.7.2-2 [123 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libx11-6 s390x 2:1.7.2-2 [650 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main s390x libxext6 s390x 2:1.3.4-0ubuntu4 [29.9 kB] Get:49 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x autoconf all 2.71-2 [338 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main s390x autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x automake all 1:1.16.5-1 [558 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main s390x autopoint all 0.21-4ubuntu3 [422 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/universe s390x bwa s390x 0.7.17-6 [193 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/universe s390x libargtable2-0 s390x 13-1.1 [14.5 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/universe s390x clustalo s390x 1.2.4-7 [195 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/universe s390x clustalw s390x 2.1+lgpl-7 [292 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main s390x libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main s390x libtool all 2.4.6-15build1 [164 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main s390x dh-autoreconf all 20 [16.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libfile-stripnondeterminism-perl all 1.12.0-2 [18.0 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x dh-strip-nondeterminism all 1.12.0-2 [5208 B] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libdw1 s390x 0.185-2 [247 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main s390x debugedit s390x 1:5.0-0ubuntu2 [48.9 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main s390x dwz s390x 0.14-1build1 [104 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main s390x gettext s390x 0.21-4ubuntu3 [848 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main s390x debhelper all 13.3.4ubuntu2 [921 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main s390x python3-lib2to3 all 3.9.7-1 [77.9 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main s390x python3-distutils all 3.9.7-1 [144 kB] Get:73 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x dh-python all 5.20211022.1 [99.5 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/universe s390x dialign s390x 2.2.1-11 [142 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libboost-iostreams1.74.0 s390x 1.74.0-8ubuntu8 [243 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libboost-program-options1.74.0 s390x 1.74.0-8ubuntu8 [304 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/universe s390x libcifpp1 s390x 1.0.1-3 [1368 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/universe s390x dssp s390x 4.0.0-2 [119 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main s390x libbrotli1 s390x 1.0.9-2build4 [318 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libfreetype6 s390x 2.11.0+dfsg-1 [380 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/universe s390x ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main s390x fonts-urw-base35 all 20200910-1 [6367 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main s390x fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main s390x libfontconfig1 s390x 2.13.1-4.2ubuntu4 [133 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main s390x libjpeg-turbo8 s390x 2.0.6-0ubuntu3 [114 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:87 http://ftpmaster.internal/ubuntu jammy/main s390x libdeflate0 s390x 1.7-2ubuntu2 [55.4 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main s390x libjbig0 s390x 2.1-3.1build2 [29.5 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main s390x libwebp6 s390x 0.6.1-2.1build1 [163 kB] Get:90 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libtiff5 s390x 4.3.0-2 [178 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main s390x libxpm4 s390x 1:3.5.12-1build1 [36.7 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main s390x libgd3 s390x 2.3.0-2ubuntu1 [132 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/universe s390x libhpdf-2.3.0 s390x 2.3.0+dfsg-1build1 [333 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main s390x mysql-common all 5.8+1.0.5ubuntu3 [7578 B] Get:95 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libmysqlclient21 s390x 8.0.27-0ubuntu0.21.10.1 [1298 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2.1build1 [14.4 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main s390x libsasl2-2 s390x 2.1.27+dfsg-2.1build1 [48.5 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main s390x libldap-2.5-0 s390x 2.5.6+dfsg-1~exp1ubuntu1 [181 kB] Get:99 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpq5 s390x 14.0-1 [196 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/universe s390x emboss-lib s390x 6.6.0+dfsg-9ubuntu1 [3080 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/universe s390x emboss-data all 6.6.0+dfsg-9ubuntu1 [61.0 MB] Get:102 http://ftpmaster.internal/ubuntu jammy/universe s390x emboss s390x 6.6.0+dfsg-9ubuntu1 [967 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/universe s390x fonts-lmodern all 2.004.5-6.1 [4532 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/universe s390x fonts-lyx all 2.3.6-1 [159 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main s390x libgs9-common all 9.54.0~dfsg1-0ubuntu2 [747 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main s390x libavahi-common-data s390x 0.8-5ubuntu4 [24.2 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main s390x libavahi-common3 s390x 0.8-5ubuntu4 [23.0 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main s390x libavahi-client3 s390x 0.8-5ubuntu4 [27.0 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main s390x libcups2 s390x 2.3.3op2-7ubuntu2 [252 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main s390x libidn11 s390x 1.33-3build1 [60.8 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main s390x libijs-0.35 s390x 0.35-15build1 [16.0 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main s390x libjbig2dec0 s390x 0.19-3build1 [64.3 kB] Get:113 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libopenjp2-7 s390x 2.4.0-3 [155 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main s390x libpaper1 s390x 1.1.28build1 [13.6 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main s390x libgs9 s390x 9.54.0~dfsg1-0ubuntu2 [4523 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main s390x ghostscript s390x 9.54.0~dfsg1-0ubuntu2 [49.8 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/universe s390x libnetpbm10 s390x 2:10.0-15.4 [60.9 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/universe s390x netpbm s390x 2:10.0-15.4 [1097 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main s390x libpaper-utils s390x 1.1.28build1 [8458 B] Get:120 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libkpathsea6 s390x 2021.20210626.59705-1 [60.2 kB] Get:121 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libptexenc1 s390x 2021.20210626.59705-1 [38.8 kB] Get:122 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libsynctex2 s390x 2021.20210626.59705-1 [56.0 kB] Get:123 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libtexlua53 s390x 2021.20210626.59705-1 [118 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main s390x t1utils s390x 1.41-4build1 [61.5 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main s390x libpixman-1-0 s390x 0.40.0-1build3 [167 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main s390x libxcb-render0 s390x 1.14-3ubuntu2 [16.6 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main s390x libxcb-shm0 s390x 1.14-3ubuntu2 [5672 B] Get:128 http://ftpmaster.internal/ubuntu jammy/main s390x libxrender1 s390x 1:0.9.10-1build3 [19.2 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main s390x libcairo2 s390x 1.16.0-5ubuntu2 [600 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main s390x libgraphite2-3 s390x 1.3.14-1build1 [68.1 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main s390x libharfbuzz0b s390x 2.7.4-1ubuntu2 [343 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/universe s390x libteckit0 s390x 2.5.10+ds1-3 [314 kB] Get:133 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main s390x libice6 s390x 2:1.0.10-1build1 [40.8 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main s390x libsm6 s390x 2:1.2.3-1build1 [17.1 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main s390x libxt6 s390x 1:1.2.0-1build1 [169 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main s390x libxmu6 s390x 2:1.1.3-0ubuntu2 [49.3 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main s390x libxaw7 s390x 2:1.0.13-1.1build1 [186 kB] Get:139 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libxi6 s390x 2:1.8-1 [31.0 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] Get:141 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x texlive-binaries s390x 2021.20210626.59705-1 [8312 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main s390x xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:143 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x texlive-base all 2021.20210921-1 [20.9 MB] Get:144 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x hevea s390x 2.35-1 [2064 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe s390x libapache-pom-java all 18-1 [4720 B] Get:146 http://ftpmaster.internal/ubuntu jammy/main s390x libblas3 s390x 3.9.0-3ubuntu3 [168 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe s390x libcommons-parent-java all 43-1 [10.8 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe s390x libcommons-logging-java all 1.2-2 [60.3 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/main s390x libnghttp2-14 s390x 1.43.0-1build1 [73.5 kB] Get:150 http://ftpmaster.internal/ubuntu jammy/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build3 [56.4 kB] Get:151 http://ftpmaster.internal/ubuntu jammy/main s390x libssh-4 s390x 0.9.6-1 [175 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/main s390x libcurl3-gnutls s390x 7.74.0-1.3ubuntu2 [260 kB] Get:153 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libexpat1-dev s390x 2.4.1-3 [145 kB] Get:154 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgfortran5 s390x 11.2.0-10ubuntu1 [452 kB] Get:155 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x libhtscodecs2 s390x 1.1.1-3 [61.0 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/universe s390x libhts3 s390x 1.13+ds-2 [374 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/main s390x libimagequant0 s390x 2.12.2-1.1build1 [34.0 kB] Get:158 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [321 kB] Get:159 http://ftpmaster.internal/ubuntu jammy/universe s390x libjs-jquery-ui all 1.12.1+dfsg-8 [231 kB] Get:160 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libjs-underscore all 1.9.1~dfsg-4 [103 kB] Get:161 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libjs-sphinxdoc all 4.2.0-5 [137 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main s390x liblapack3 s390x 3.9.0-3ubuntu3 [2032 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe s390x liblbfgsb0 s390x 3.0+dfsg.3-9 [25.4 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main s390x liblcms2-2 s390x 2.12~rc1-2build1 [152 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/universe s390x libmbedcrypto3 s390x 2.16.9-0.1ubuntu1 [151 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/universe s390x libmbedx509-0 s390x 2.16.9-0.1ubuntu1 [40.7 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/universe s390x libmbedtls12 s390x 2.16.9-0.1ubuntu1 [66.0 kB] Get:168 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpython3.9 s390x 3.9.7-4 [1855 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2ubuntu7 [170 kB] Get:170 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpython3.9-dev s390x 3.9.7-4 [4374 kB] Get:171 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpython3-dev s390x 3.9.4-1ubuntu2 [7444 B] Get:172 http://ftpmaster.internal/ubuntu jammy/main s390x libpython3.10-stdlib s390x 3.10.0-3 [1788 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/main s390x libpython3.10 s390x 3.10.0-3 [1888 kB] Get:174 http://ftpmaster.internal/ubuntu jammy/main s390x libpython3.10-dev s390x 3.10.0-3 [4438 kB] Get:175 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpython3-all-dev s390x 3.9.4-1ubuntu2 [928 B] Get:176 http://ftpmaster.internal/ubuntu jammy/universe s390x libraqm0 s390x 0.7.0-4 [11.0 kB] Get:177 http://ftpmaster.internal/ubuntu jammy/main s390x libwebpdemux2 s390x 0.6.1-2.1build1 [9684 B] Get:178 http://ftpmaster.internal/ubuntu jammy/main s390x libwebpmux3 s390x 0.6.1-2.1build1 [19.1 kB] Get:179 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x mafft s390x 7.487-1 [747 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/universe s390x muscle s390x 1:3.8.1551-2build1 [283 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/universe s390x ncbi-data all 6.1.20170106+dfsg1-9 [3519 kB] Get:182 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x ncbi-blast+ s390x 2.11.0+ds-1 [10.8 MB] Get:183 http://ftpmaster.internal/ubuntu jammy/universe s390x phylip s390x 1:3.697+dfsg-2 [1081 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/universe s390x prank s390x 0.0.170427+dfsg-3 [357 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/universe s390x preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:186 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x probcons s390x 1.12-14 [109 kB] Get:187 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x python-matplotlib-data all 3.3.4-2 [4036 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/main s390x python3.10 s390x 3.10.0-3 [473 kB] Get:189 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-all s390x 3.9.4-1ubuntu2 [920 B] Get:190 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3.9-dev s390x 3.9.7-4 [507 kB] Get:191 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-dev s390x 3.9.4-1ubuntu2 [25.5 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/main s390x python3.10-dev s390x 3.10.0-3 [508 kB] Get:193 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-all-dev s390x 3.9.4-1ubuntu2 [928 B] Get:194 http://ftpmaster.internal/ubuntu jammy/main s390x python3-six all 1.16.0-2 [12.6 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe s390x python3-cycler all 0.10.0-3 [8132 B] Get:196 http://ftpmaster.internal/ubuntu jammy/main s390x python3-dateutil all 2.8.1-6 [78.4 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/main s390x python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe s390x python3-isodate all 0.6.0-2 [24.0 kB] Get:199 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x python3-kiwisolver s390x 1.3.2-1 [59.0 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/main s390x python3-linecache2 all 1.0.0-4ubuntu2 [13.3 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/main s390x python3-pyparsing all 2.4.7-1 [61.4 kB] Get:202 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-numpy s390x 1:1.20.2-1ubuntu1 [4339 kB] Get:203 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-pil s390x 8.3.2-1 [432 kB] Get:204 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x python3-matplotlib s390x 3.3.4-2 [6324 kB] Get:205 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-msgpack s390x 1.0.2-2 [76.7 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/universe s390x python3-mmtf all 1.1.2-3 [15.9 kB] Get:207 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-mysqldb s390x 1.4.6-1 [48.4 kB] Get:208 http://ftpmaster.internal/ubuntu jammy/main s390x python3-networkx all 2.4-4ubuntu1 [855 kB] Get:209 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-psycopg2 s390x 2.9.1-1 [150 kB] Get:210 http://ftpmaster.internal/ubuntu jammy/main s390x python3-pygments all 2.7.1+dfsg-2.1 [639 kB] Get:211 http://ftpmaster.internal/ubuntu jammy/universe s390x python3-rdflib all 5.0.0-1.1build1 [174 kB] Get:212 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-renderpm s390x 3.6.1-1 [62.1 kB] Get:213 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-reportlab-accel s390x 3.6.1-1 [20.1 kB] Get:214 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-reportlab all 3.6.1-1 [560 kB] Get:215 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x python3-setuptools all 58.2.0-1 [336 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/main s390x python3-traceback2 all 1.4.0-6 [16.6 kB] Get:217 http://ftpmaster.internal/ubuntu jammy/main s390x python3-unittest2 all 1.1.0-7 [75.5 kB] Get:218 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x samtools s390x 1.13-4 [517 kB] Get:219 http://ftpmaster.internal/ubuntu jammy/universe s390x t-coffee s390x 13.41.0.28bdc39+dfsg-4 [1102 kB] Get:220 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x texlive-fonts-recommended all 2021.20210921-1 [4972 kB] Get:221 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x texlive-latex-base all 2021.20210921-1 [1119 kB] Get:222 http://ftpmaster.internal/ubuntu jammy/universe s390x libfontbox-java all 1:1.8.16-2 [207 kB] Get:223 http://ftpmaster.internal/ubuntu jammy/universe s390x libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:224 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x texlive-latex-recommended all 2021.20210921-1 [14.4 MB] Get:225 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x texlive-pictures all 2021.20210921-1 [8679 kB] Get:226 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x texlive-latex-extra all 2021.20210921-1 [14.1 MB] Get:227 http://ftpmaster.internal/ubuntu jammy/universe s390x wise-data all 2.4.1-23 [76.8 kB] Get:228 http://ftpmaster.internal/ubuntu jammy/universe s390x wise s390x 2.4.1-23 [979 kB] Get:229 http://ftpmaster.internal/ubuntu jammy/universe s390x fasttree s390x 2.1.11-2 [190 kB] Get:230 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x python3-scipy s390x 1.7.1-1ubuntu1 [14.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 278 MB in 16s (17.2 MB/s) Selecting previously unselected package libpython3.9-minimal:s390x. (Reading database ... 13034 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.7-4_s390x.deb ... Unpacking libpython3.9-minimal:s390x (3.9.7-4) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.4.1-3_s390x.deb ... Unpacking libexpat1:s390x (2.4.1-3) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.7-4_s390x.deb ... Unpacking python3.9-minimal (3.9.7-4) ... Setting up libpython3.9-minimal:s390x (3.9.7-4) ... Setting up libexpat1:s390x (2.4.1-3) ... Setting up python3.9-minimal (3.9.7-4) ... Selecting previously unselected package python3-minimal. (Reading database ... 13327 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.4-1ubuntu2_s390x.deb ... Unpacking python3-minimal (3.9.4-1ubuntu2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70ubuntu1_all.deb ... Unpacking mailcap (3.70ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:s390x. Preparing to unpack .../4-libmpdec3_2.5.1-2build1_s390x.deb ... Unpacking libmpdec3:s390x (2.5.1-2build1) ... Selecting previously unselected package libpython3.9-stdlib:s390x. Preparing to unpack .../5-libpython3.9-stdlib_3.9.7-4_s390x.deb ... Unpacking libpython3.9-stdlib:s390x (3.9.7-4) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.7-4_s390x.deb ... Unpacking python3.9 (3.9.7-4) ... Selecting previously unselected package libpython3-stdlib:s390x. Preparing to unpack .../7-libpython3-stdlib_3.9.4-1ubuntu2_s390x.deb ... Unpacking libpython3-stdlib:s390x (3.9.4-1ubuntu2) ... Setting up python3-minimal (3.9.4-1ubuntu2) ... Selecting previously unselected package python3. (Reading database ... 13749 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.4-1ubuntu2_s390x.deb ... Unpacking python3 (3.9.4-1ubuntu2) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../001-bsdextrautils_2.36.1-8ubuntu2_s390x.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../002-libuchardet0_0.0.7-1build1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-7_s390x.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../004-libpipeline1_1.5.3-1build1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.4-2build1_s390x.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../006-libsigsegv2_2.13-1ubuntu2_s390x.deb ... Unpacking libsigsegv2:s390x (2.13-1ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../007-m4_1.4.18-5ubuntu1_s390x.deb ... Unpacking m4 (1.4.18-5ubuntu1) ... Selecting previously unselected package flex. Preparing to unpack .../008-flex_2.6.4-8build1_s390x.deb ... Unpacking flex (2.6.4-8build1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../009-poppler-data_0.4.11-1_all.deb ... Unpacking poppler-data (0.4.11-1) ... Selecting previously unselected package libpython3.10-minimal:s390x. Preparing to unpack .../010-libpython3.10-minimal_3.10.0-3_s390x.deb ... Unpacking libpython3.10-minimal:s390x (3.10.0-3) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../011-python3.10-minimal_3.10.0-3_s390x.deb ... Unpacking python3.10-minimal (3.10.0-3) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package tex-common. Preparing to unpack .../013-tex-common_6.17_all.deb ... Unpacking tex-common (6.17) ... Selecting previously unselected package libmd0:s390x. Preparing to unpack .../014-libmd0_1.0.4-1_s390x.deb ... Unpacking libmd0:s390x (1.0.4-1) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../015-libbsd0_0.11.3-1ubuntu3_s390x.deb ... Unpacking libbsd0:s390x (0.11.3-1ubuntu3) ... Selecting previously unselected package libdbus-1-3:s390x. Preparing to unpack .../016-libdbus-1-3_1.12.20-2ubuntu2_s390x.deb ... Unpacking libdbus-1-3:s390x (1.12.20-2ubuntu2) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../017-libelf1_0.185-2_s390x.deb ... Unpacking libelf1:s390x (0.185-2) ... Selecting previously unselected package libfribidi0:s390x. Preparing to unpack .../018-libfribidi0_1.0.8-2ubuntu2_s390x.deb ... Unpacking libfribidi0:s390x (1.0.8-2ubuntu2) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../019-libglib2.0-0_2.70.0-3_s390x.deb ... Unpacking libglib2.0-0:s390x (2.70.0-3) ... Selecting previously unselected package libicu67:s390x. Preparing to unpack .../020-libicu67_67.1-7ubuntu1_s390x.deb ... Unpacking libicu67:s390x (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../021-libxml2_2.9.12+dfsg-5_s390x.deb ... Unpacking libxml2:s390x (2.9.12+dfsg-5) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../022-python3-pkg-resources_58.2.0-1_all.deb ... Unpacking python3-pkg-resources (58.2.0-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../023-libmagic-mgc_1%3a5.39-3build1_s390x.deb ... Unpacking libmagic-mgc (1:5.39-3build1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../024-libmagic1_1%3a5.39-3build1_s390x.deb ... Unpacking libmagic1:s390x (1:5.39-3build1) ... Selecting previously unselected package file. Preparing to unpack .../025-file_1%3a5.39-3build1_s390x.deb ... Unpacking file (1:5.39-3build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../026-gettext-base_0.21-4ubuntu3_s390x.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libedit2:s390x. Preparing to unpack .../027-libedit2_3.1-20210910-1_s390x.deb ... Unpacking libedit2:s390x (3.1-20210910-1) ... Selecting previously unselected package liblmdb0:s390x. Preparing to unpack .../028-liblmdb0_0.9.24-1build1_s390x.deb ... Unpacking liblmdb0:s390x (0.9.24-1build1) ... Selecting previously unselected package libpsl5:s390x. Preparing to unpack .../029-libpsl5_0.21.0-1.2build1_s390x.deb ... Unpacking libpsl5:s390x (0.21.0-1.2build1) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../030-libxau6_1%3a1.0.9-1build4_s390x.deb ... Unpacking libxau6:s390x (1:1.0.9-1build4) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../031-libxdmcp6_1%3a1.1.3-0ubuntu4_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.3-0ubuntu4) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../032-libxcb1_1.14-3ubuntu2_s390x.deb ... Unpacking libxcb1:s390x (1.14-3ubuntu2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../033-libx11-data_2%3a1.7.2-2_all.deb ... Unpacking libx11-data (2:1.7.2-2) ... Selecting previously unselected package libx11-6:s390x. Preparing to unpack .../034-libx11-6_2%3a1.7.2-2_s390x.deb ... Unpacking libx11-6:s390x (2:1.7.2-2) ... Selecting previously unselected package libxext6:s390x. Preparing to unpack .../035-libxext6_2%3a1.3.4-0ubuntu4_s390x.deb ... Unpacking libxext6:s390x (2:1.3.4-0ubuntu4) ... Selecting previously unselected package autoconf. Preparing to unpack .../036-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../037-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../038-automake_1%3a1.16.5-1_all.deb ... Unpacking automake (1:1.16.5-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../039-autopoint_0.21-4ubuntu3_all.deb ... Unpacking autopoint (0.21-4ubuntu3) ... Selecting previously unselected package bwa. Preparing to unpack .../040-bwa_0.7.17-6_s390x.deb ... Unpacking bwa (0.7.17-6) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../041-libargtable2-0_13-1.1_s390x.deb ... Unpacking libargtable2-0 (13-1.1) ... Selecting previously unselected package clustalo. Preparing to unpack .../042-clustalo_1.2.4-7_s390x.deb ... Unpacking clustalo (1.2.4-7) ... Selecting previously unselected package clustalw. Preparing to unpack .../043-clustalw_2.1+lgpl-7_s390x.deb ... Unpacking clustalw (2.1+lgpl-7) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../044-libdebhelper-perl_13.3.4ubuntu2_all.deb ... Unpacking libdebhelper-perl (13.3.4ubuntu2) ... Selecting previously unselected package libtool. Preparing to unpack .../045-libtool_2.4.6-15build1_all.deb ... Unpacking libtool (2.4.6-15build1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../046-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../047-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../048-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../049-libfile-stripnondeterminism-perl_1.12.0-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../050-dh-strip-nondeterminism_1.12.0-2_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-2) ... Selecting previously unselected package libdw1:s390x. Preparing to unpack .../051-libdw1_0.185-2_s390x.deb ... Unpacking libdw1:s390x (0.185-2) ... Selecting previously unselected package debugedit. Preparing to unpack .../052-debugedit_1%3a5.0-0ubuntu2_s390x.deb ... Unpacking debugedit (1:5.0-0ubuntu2) ... Selecting previously unselected package dwz. Preparing to unpack .../053-dwz_0.14-1build1_s390x.deb ... Unpacking dwz (0.14-1build1) ... Selecting previously unselected package gettext. Preparing to unpack .../054-gettext_0.21-4ubuntu3_s390x.deb ... Unpacking gettext (0.21-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../055-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../057-debhelper_13.3.4ubuntu2_all.deb ... Unpacking debhelper (13.3.4ubuntu2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../058-python3-lib2to3_3.9.7-1_all.deb ... Unpacking python3-lib2to3 (3.9.7-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../059-python3-distutils_3.9.7-1_all.deb ... Unpacking python3-distutils (3.9.7-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../060-dh-python_5.20211022.1_all.deb ... Unpacking dh-python (5.20211022.1) ... Selecting previously unselected package dialign. Preparing to unpack .../061-dialign_2.2.1-11_s390x.deb ... Unpacking dialign (2.2.1-11) ... Selecting previously unselected package libboost-iostreams1.74.0:s390x. Preparing to unpack .../062-libboost-iostreams1.74.0_1.74.0-8ubuntu8_s390x.deb ... Unpacking libboost-iostreams1.74.0:s390x (1.74.0-8ubuntu8) ... Selecting previously unselected package libboost-program-options1.74.0:s390x. Preparing to unpack .../063-libboost-program-options1.74.0_1.74.0-8ubuntu8_s390x.deb ... Unpacking libboost-program-options1.74.0:s390x (1.74.0-8ubuntu8) ... Selecting previously unselected package libcifpp1. Preparing to unpack .../064-libcifpp1_1.0.1-3_s390x.deb ... Unpacking libcifpp1 (1.0.1-3) ... Selecting previously unselected package dssp. Preparing to unpack .../065-dssp_4.0.0-2_s390x.deb ... Unpacking dssp (4.0.0-2) ... Selecting previously unselected package libbrotli1:s390x. Preparing to unpack .../066-libbrotli1_1.0.9-2build4_s390x.deb ... Unpacking libbrotli1:s390x (1.0.9-2build4) ... Selecting previously unselected package libfreetype6:s390x. Preparing to unpack .../067-libfreetype6_2.11.0+dfsg-1_s390x.deb ... Unpacking libfreetype6:s390x (2.11.0+dfsg-1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../068-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../069-fonts-urw-base35_20200910-1_all.deb ... Unpacking fonts-urw-base35 (20200910-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../070-fontconfig-config_2.13.1-4.2ubuntu4_all.deb ... Unpacking fontconfig-config (2.13.1-4.2ubuntu4) ... Selecting previously unselected package libfontconfig1:s390x. Preparing to unpack .../071-libfontconfig1_2.13.1-4.2ubuntu4_s390x.deb ... Unpacking libfontconfig1:s390x (2.13.1-4.2ubuntu4) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../072-libjpeg-turbo8_2.0.6-0ubuntu3_s390x.deb ... Unpacking libjpeg-turbo8:s390x (2.0.6-0ubuntu3) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../073-libjpeg8_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu8) ... Selecting previously unselected package libdeflate0:s390x. Preparing to unpack .../074-libdeflate0_1.7-2ubuntu2_s390x.deb ... Unpacking libdeflate0:s390x (1.7-2ubuntu2) ... Selecting previously unselected package libjbig0:s390x. Preparing to unpack .../075-libjbig0_2.1-3.1build2_s390x.deb ... Unpacking libjbig0:s390x (2.1-3.1build2) ... Selecting previously unselected package libwebp6:s390x. Preparing to unpack .../076-libwebp6_0.6.1-2.1build1_s390x.deb ... Unpacking libwebp6:s390x (0.6.1-2.1build1) ... Selecting previously unselected package libtiff5:s390x. Preparing to unpack .../077-libtiff5_4.3.0-2_s390x.deb ... Unpacking libtiff5:s390x (4.3.0-2) ... Selecting previously unselected package libxpm4:s390x. Preparing to unpack .../078-libxpm4_1%3a3.5.12-1build1_s390x.deb ... Unpacking libxpm4:s390x (1:3.5.12-1build1) ... Selecting previously unselected package libgd3:s390x. Preparing to unpack .../079-libgd3_2.3.0-2ubuntu1_s390x.deb ... Unpacking libgd3:s390x (2.3.0-2ubuntu1) ... Selecting previously unselected package libhpdf-2.3.0:s390x. Preparing to unpack .../080-libhpdf-2.3.0_2.3.0+dfsg-1build1_s390x.deb ... Unpacking libhpdf-2.3.0:s390x (2.3.0+dfsg-1build1) ... Selecting previously unselected package mysql-common. Preparing to unpack .../081-mysql-common_5.8+1.0.5ubuntu3_all.deb ... Unpacking mysql-common (5.8+1.0.5ubuntu3) ... Selecting previously unselected package libmysqlclient21:s390x. Preparing to unpack .../082-libmysqlclient21_8.0.27-0ubuntu0.21.10.1_s390x.deb ... Unpacking libmysqlclient21:s390x (8.0.27-0ubuntu0.21.10.1) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../083-libsasl2-modules-db_2.1.27+dfsg-2.1build1_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.27+dfsg-2.1build1) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../084-libsasl2-2_2.1.27+dfsg-2.1build1_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.27+dfsg-2.1build1) ... Selecting previously unselected package libldap-2.5-0:s390x. Preparing to unpack .../085-libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1_s390x.deb ... Unpacking libldap-2.5-0:s390x (2.5.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package libpq5:s390x. Preparing to unpack .../086-libpq5_14.0-1_s390x.deb ... Unpacking libpq5:s390x (14.0-1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../087-emboss-lib_6.6.0+dfsg-9ubuntu1_s390x.deb ... Unpacking emboss-lib (6.6.0+dfsg-9ubuntu1) ... Selecting previously unselected package emboss-data. Preparing to unpack .../088-emboss-data_6.6.0+dfsg-9ubuntu1_all.deb ... Unpacking emboss-data (6.6.0+dfsg-9ubuntu1) ... Selecting previously unselected package emboss. Preparing to unpack .../089-emboss_6.6.0+dfsg-9ubuntu1_s390x.deb ... Unpacking emboss (6.6.0+dfsg-9ubuntu1) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../090-fonts-lmodern_2.004.5-6.1_all.deb ... Unpacking fonts-lmodern (2.004.5-6.1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../091-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../092-libgs9-common_9.54.0~dfsg1-0ubuntu2_all.deb ... Unpacking libgs9-common (9.54.0~dfsg1-0ubuntu2) ... Selecting previously unselected package libavahi-common-data:s390x. Preparing to unpack .../093-libavahi-common-data_0.8-5ubuntu4_s390x.deb ... Unpacking libavahi-common-data:s390x (0.8-5ubuntu4) ... Selecting previously unselected package libavahi-common3:s390x. Preparing to unpack .../094-libavahi-common3_0.8-5ubuntu4_s390x.deb ... Unpacking libavahi-common3:s390x (0.8-5ubuntu4) ... Selecting previously unselected package libavahi-client3:s390x. Preparing to unpack .../095-libavahi-client3_0.8-5ubuntu4_s390x.deb ... Unpacking libavahi-client3:s390x (0.8-5ubuntu4) ... Selecting previously unselected package libcups2:s390x. Preparing to unpack .../096-libcups2_2.3.3op2-7ubuntu2_s390x.deb ... Unpacking libcups2:s390x (2.3.3op2-7ubuntu2) ... Selecting previously unselected package libidn11:s390x. Preparing to unpack .../097-libidn11_1.33-3build1_s390x.deb ... Unpacking libidn11:s390x (1.33-3build1) ... Selecting previously unselected package libijs-0.35:s390x. Preparing to unpack .../098-libijs-0.35_0.35-15build1_s390x.deb ... Unpacking libijs-0.35:s390x (0.35-15build1) ... Selecting previously unselected package libjbig2dec0:s390x. Preparing to unpack .../099-libjbig2dec0_0.19-3build1_s390x.deb ... Unpacking libjbig2dec0:s390x (0.19-3build1) ... Selecting previously unselected package libopenjp2-7:s390x. Preparing to unpack .../100-libopenjp2-7_2.4.0-3_s390x.deb ... Unpacking libopenjp2-7:s390x (2.4.0-3) ... Selecting previously unselected package libpaper1:s390x. Preparing to unpack .../101-libpaper1_1.1.28build1_s390x.deb ... Unpacking libpaper1:s390x (1.1.28build1) ... Selecting previously unselected package libgs9:s390x. Preparing to unpack .../102-libgs9_9.54.0~dfsg1-0ubuntu2_s390x.deb ... Unpacking libgs9:s390x (9.54.0~dfsg1-0ubuntu2) ... Selecting previously unselected package ghostscript. Preparing to unpack .../103-ghostscript_9.54.0~dfsg1-0ubuntu2_s390x.deb ... Unpacking ghostscript (9.54.0~dfsg1-0ubuntu2) ... Selecting previously unselected package libnetpbm10. Preparing to unpack .../104-libnetpbm10_2%3a10.0-15.4_s390x.deb ... Unpacking libnetpbm10 (2:10.0-15.4) ... Selecting previously unselected package netpbm. Preparing to unpack .../105-netpbm_2%3a10.0-15.4_s390x.deb ... Unpacking netpbm (2:10.0-15.4) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../106-libpaper-utils_1.1.28build1_s390x.deb ... Unpacking libpaper-utils (1.1.28build1) ... Selecting previously unselected package libkpathsea6:s390x. Preparing to unpack .../107-libkpathsea6_2021.20210626.59705-1_s390x.deb ... Unpacking libkpathsea6:s390x (2021.20210626.59705-1) ... Selecting previously unselected package libptexenc1:s390x. Preparing to unpack .../108-libptexenc1_2021.20210626.59705-1_s390x.deb ... Unpacking libptexenc1:s390x (2021.20210626.59705-1) ... Selecting previously unselected package libsynctex2:s390x. Preparing to unpack .../109-libsynctex2_2021.20210626.59705-1_s390x.deb ... Unpacking libsynctex2:s390x (2021.20210626.59705-1) ... Selecting previously unselected package libtexlua53:s390x. Preparing to unpack .../110-libtexlua53_2021.20210626.59705-1_s390x.deb ... Unpacking libtexlua53:s390x (2021.20210626.59705-1) ... Selecting previously unselected package t1utils. Preparing to unpack .../111-t1utils_1.41-4build1_s390x.deb ... Unpacking t1utils (1.41-4build1) ... Selecting previously unselected package libpixman-1-0:s390x. Preparing to unpack .../112-libpixman-1-0_0.40.0-1build3_s390x.deb ... Unpacking libpixman-1-0:s390x (0.40.0-1build3) ... Selecting previously unselected package libxcb-render0:s390x. Preparing to unpack .../113-libxcb-render0_1.14-3ubuntu2_s390x.deb ... Unpacking libxcb-render0:s390x (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-shm0:s390x. Preparing to unpack .../114-libxcb-shm0_1.14-3ubuntu2_s390x.deb ... Unpacking libxcb-shm0:s390x (1.14-3ubuntu2) ... Selecting previously unselected package libxrender1:s390x. Preparing to unpack .../115-libxrender1_1%3a0.9.10-1build3_s390x.deb ... Unpacking libxrender1:s390x (1:0.9.10-1build3) ... Selecting previously unselected package libcairo2:s390x. Preparing to unpack .../116-libcairo2_1.16.0-5ubuntu2_s390x.deb ... Unpacking libcairo2:s390x (1.16.0-5ubuntu2) ... Selecting previously unselected package libgraphite2-3:s390x. Preparing to unpack .../117-libgraphite2-3_1.3.14-1build1_s390x.deb ... Unpacking libgraphite2-3:s390x (1.3.14-1build1) ... Selecting previously unselected package libharfbuzz0b:s390x. Preparing to unpack .../118-libharfbuzz0b_2.7.4-1ubuntu2_s390x.deb ... Unpacking libharfbuzz0b:s390x (2.7.4-1ubuntu2) ... Selecting previously unselected package libteckit0:s390x. Preparing to unpack .../119-libteckit0_2.5.10+ds1-3_s390x.deb ... Unpacking libteckit0:s390x (2.5.10+ds1-3) ... Selecting previously unselected package x11-common. Preparing to unpack .../120-x11-common_1%3a7.7+23ubuntu1_all.deb ... Unpacking x11-common (1:7.7+23ubuntu1) ... Selecting previously unselected package libice6:s390x. Preparing to unpack .../121-libice6_2%3a1.0.10-1build1_s390x.deb ... Unpacking libice6:s390x (2:1.0.10-1build1) ... Selecting previously unselected package libsm6:s390x. Preparing to unpack .../122-libsm6_2%3a1.2.3-1build1_s390x.deb ... Unpacking libsm6:s390x (2:1.2.3-1build1) ... Selecting previously unselected package libxt6:s390x. Preparing to unpack .../123-libxt6_1%3a1.2.0-1build1_s390x.deb ... Unpacking libxt6:s390x (1:1.2.0-1build1) ... Selecting previously unselected package libxmu6:s390x. Preparing to unpack .../124-libxmu6_2%3a1.1.3-0ubuntu2_s390x.deb ... Unpacking libxmu6:s390x (2:1.1.3-0ubuntu2) ... Selecting previously unselected package libxaw7:s390x. Preparing to unpack .../125-libxaw7_2%3a1.0.13-1.1build1_s390x.deb ... Unpacking libxaw7:s390x (2:1.0.13-1.1build1) ... Selecting previously unselected package libxi6:s390x. Preparing to unpack .../126-libxi6_2%3a1.8-1_s390x.deb ... Unpacking libxi6:s390x (2:1.8-1) ... Selecting previously unselected package libzzip-0-13:s390x. Preparing to unpack .../127-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../128-texlive-binaries_2021.20210626.59705-1_s390x.deb ... Unpacking texlive-binaries (2021.20210626.59705-1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../129-xdg-utils_1.1.3-2ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-2ubuntu2) ... Selecting previously unselected package texlive-base. Preparing to unpack .../130-texlive-base_2021.20210921-1_all.deb ... Unpacking texlive-base (2021.20210921-1) ... Selecting previously unselected package hevea. Preparing to unpack .../131-hevea_2.35-1_s390x.deb ... Unpacking hevea (2.35-1) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../132-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libblas3:s390x. Preparing to unpack .../133-libblas3_3.9.0-3ubuntu3_s390x.deb ... Unpacking libblas3:s390x (3.9.0-3ubuntu3) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../134-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../135-libcommons-logging-java_1.2-2_all.deb ... Unpacking libcommons-logging-java (1.2-2) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../136-libnghttp2-14_1.43.0-1build1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.43.0-1build1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../137-librtmp1_2.4+20151223.gitfa8646d.1-2build3_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build3) ... Selecting previously unselected package libssh-4:s390x. Preparing to unpack .../138-libssh-4_0.9.6-1_s390x.deb ... Unpacking libssh-4:s390x (0.9.6-1) ... Selecting previously unselected package libcurl3-gnutls:s390x. Preparing to unpack .../139-libcurl3-gnutls_7.74.0-1.3ubuntu2_s390x.deb ... Unpacking libcurl3-gnutls:s390x (7.74.0-1.3ubuntu2) ... Selecting previously unselected package libexpat1-dev:s390x. Preparing to unpack .../140-libexpat1-dev_2.4.1-3_s390x.deb ... Unpacking libexpat1-dev:s390x (2.4.1-3) ... Selecting previously unselected package libgfortran5:s390x. Preparing to unpack .../141-libgfortran5_11.2.0-10ubuntu1_s390x.deb ... Unpacking libgfortran5:s390x (11.2.0-10ubuntu1) ... Selecting previously unselected package libhtscodecs2:s390x. Preparing to unpack .../142-libhtscodecs2_1.1.1-3_s390x.deb ... Unpacking libhtscodecs2:s390x (1.1.1-3) ... Selecting previously unselected package libhts3:s390x. Preparing to unpack .../143-libhts3_1.13+ds-2_s390x.deb ... Unpacking libhts3:s390x (1.13+ds-2) ... Selecting previously unselected package libimagequant0:s390x. Preparing to unpack .../144-libimagequant0_2.12.2-1.1build1_s390x.deb ... Unpacking libimagequant0:s390x (2.12.2-1.1build1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../145-libjs-jquery_3.5.1+dfsg+~3.5.5-8_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../146-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../147-libjs-underscore_1.9.1~dfsg-4_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-4) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../148-libjs-sphinxdoc_4.2.0-5_all.deb ... Unpacking libjs-sphinxdoc (4.2.0-5) ... Selecting previously unselected package liblapack3:s390x. Preparing to unpack .../149-liblapack3_3.9.0-3ubuntu3_s390x.deb ... Unpacking liblapack3:s390x (3.9.0-3ubuntu3) ... Selecting previously unselected package liblbfgsb0:s390x. Preparing to unpack .../150-liblbfgsb0_3.0+dfsg.3-9_s390x.deb ... Unpacking liblbfgsb0:s390x (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:s390x. Preparing to unpack .../151-liblcms2-2_2.12~rc1-2build1_s390x.deb ... Unpacking liblcms2-2:s390x (2.12~rc1-2build1) ... Selecting previously unselected package libmbedcrypto3:s390x. Preparing to unpack .../152-libmbedcrypto3_2.16.9-0.1ubuntu1_s390x.deb ... Unpacking libmbedcrypto3:s390x (2.16.9-0.1ubuntu1) ... Selecting previously unselected package libmbedx509-0:s390x. Preparing to unpack .../153-libmbedx509-0_2.16.9-0.1ubuntu1_s390x.deb ... Unpacking libmbedx509-0:s390x (2.16.9-0.1ubuntu1) ... Selecting previously unselected package libmbedtls12:s390x. Preparing to unpack .../154-libmbedtls12_2.16.9-0.1ubuntu1_s390x.deb ... Unpacking libmbedtls12:s390x (2.16.9-0.1ubuntu1) ... Selecting previously unselected package libpython3.9:s390x. Preparing to unpack .../155-libpython3.9_3.9.7-4_s390x.deb ... Unpacking libpython3.9:s390x (3.9.7-4) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../156-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu7_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-2ubuntu7) ... Selecting previously unselected package libpython3.9-dev:s390x. Preparing to unpack .../157-libpython3.9-dev_3.9.7-4_s390x.deb ... Unpacking libpython3.9-dev:s390x (3.9.7-4) ... Selecting previously unselected package libpython3-dev:s390x. Preparing to unpack .../158-libpython3-dev_3.9.4-1ubuntu2_s390x.deb ... Unpacking libpython3-dev:s390x (3.9.4-1ubuntu2) ... Selecting previously unselected package libpython3.10-stdlib:s390x. Preparing to unpack .../159-libpython3.10-stdlib_3.10.0-3_s390x.deb ... Unpacking libpython3.10-stdlib:s390x (3.10.0-3) ... Selecting previously unselected package libpython3.10:s390x. Preparing to unpack .../160-libpython3.10_3.10.0-3_s390x.deb ... Unpacking libpython3.10:s390x (3.10.0-3) ... Selecting previously unselected package libpython3.10-dev:s390x. Preparing to unpack .../161-libpython3.10-dev_3.10.0-3_s390x.deb ... Unpacking libpython3.10-dev:s390x (3.10.0-3) ... Selecting previously unselected package libpython3-all-dev:s390x. Preparing to unpack .../162-libpython3-all-dev_3.9.4-1ubuntu2_s390x.deb ... Unpacking libpython3-all-dev:s390x (3.9.4-1ubuntu2) ... Selecting previously unselected package libraqm0:s390x. Preparing to unpack .../163-libraqm0_0.7.0-4_s390x.deb ... Unpacking libraqm0:s390x (0.7.0-4) ... Selecting previously unselected package libwebpdemux2:s390x. Preparing to unpack .../164-libwebpdemux2_0.6.1-2.1build1_s390x.deb ... Unpacking libwebpdemux2:s390x (0.6.1-2.1build1) ... Selecting previously unselected package libwebpmux3:s390x. Preparing to unpack .../165-libwebpmux3_0.6.1-2.1build1_s390x.deb ... Unpacking libwebpmux3:s390x (0.6.1-2.1build1) ... Selecting previously unselected package mafft. Preparing to unpack .../166-mafft_7.487-1_s390x.deb ... Unpacking mafft (7.487-1) ... Selecting previously unselected package muscle. Preparing to unpack .../167-muscle_1%3a3.8.1551-2build1_s390x.deb ... Unpacking muscle (1:3.8.1551-2build1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../168-ncbi-data_6.1.20170106+dfsg1-9_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-9) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../169-ncbi-blast+_2.11.0+ds-1_s390x.deb ... Unpacking ncbi-blast+ (2.11.0+ds-1) ... Selecting previously unselected package phylip. Preparing to unpack .../170-phylip_1%3a3.697+dfsg-2_s390x.deb ... Unpacking phylip (1:3.697+dfsg-2) ... Selecting previously unselected package prank. Preparing to unpack .../171-prank_0.0.170427+dfsg-3_s390x.deb ... Unpacking prank (0.0.170427+dfsg-3) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../172-preview-latex-style_12.2-1ubuntu1_all.deb ... Unpacking preview-latex-style (12.2-1ubuntu1) ... Selecting previously unselected package probcons. Preparing to unpack .../173-probcons_1.12-14_s390x.deb ... Unpacking probcons (1.12-14) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../174-python-matplotlib-data_3.3.4-2_all.deb ... Unpacking python-matplotlib-data (3.3.4-2) ... Selecting previously unselected package python3.10. Preparing to unpack .../175-python3.10_3.10.0-3_s390x.deb ... Unpacking python3.10 (3.10.0-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../176-python3-all_3.9.4-1ubuntu2_s390x.deb ... Unpacking python3-all (3.9.4-1ubuntu2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../177-python3.9-dev_3.9.7-4_s390x.deb ... Unpacking python3.9-dev (3.9.7-4) ... Selecting previously unselected package python3-dev. Preparing to unpack .../178-python3-dev_3.9.4-1ubuntu2_s390x.deb ... Unpacking python3-dev (3.9.4-1ubuntu2) ... Selecting previously unselected package python3.10-dev. Preparing to unpack .../179-python3.10-dev_3.10.0-3_s390x.deb ... Unpacking python3.10-dev (3.10.0-3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../180-python3-all-dev_3.9.4-1ubuntu2_s390x.deb ... Unpacking python3-all-dev (3.9.4-1ubuntu2) ... Selecting previously unselected package python3-six. Preparing to unpack .../181-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../182-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../183-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../184-python3-decorator_4.4.2-0ubuntu1_all.deb ... Unpacking python3-decorator (4.4.2-0ubuntu1) ... Selecting previously unselected package python3-isodate. Preparing to unpack .../185-python3-isodate_0.6.0-2_all.deb ... Unpacking python3-isodate (0.6.0-2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../186-python3-kiwisolver_1.3.2-1_s390x.deb ... Unpacking python3-kiwisolver (1.3.2-1) ... Selecting previously unselected package python3-linecache2. Preparing to unpack .../187-python3-linecache2_1.0.0-4ubuntu2_all.deb ... Unpacking python3-linecache2 (1.0.0-4ubuntu2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../188-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../189-python3-numpy_1%3a1.20.2-1ubuntu1_s390x.deb ... Unpacking python3-numpy (1:1.20.2-1ubuntu1) ... Selecting previously unselected package python3-pil:s390x. Preparing to unpack .../190-python3-pil_8.3.2-1_s390x.deb ... Unpacking python3-pil:s390x (8.3.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../191-python3-matplotlib_3.3.4-2_s390x.deb ... Unpacking python3-matplotlib (3.3.4-2) ... Selecting previously unselected package python3-msgpack. Preparing to unpack .../192-python3-msgpack_1.0.2-2_s390x.deb ... Unpacking python3-msgpack (1.0.2-2) ... Selecting previously unselected package python3-mmtf. Preparing to unpack .../193-python3-mmtf_1.1.2-3_all.deb ... Unpacking python3-mmtf (1.1.2-3) ... Selecting previously unselected package python3-mysqldb. Preparing to unpack .../194-python3-mysqldb_1.4.6-1_s390x.deb ... Unpacking python3-mysqldb (1.4.6-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../195-python3-networkx_2.4-4ubuntu1_all.deb ... Unpacking python3-networkx (2.4-4ubuntu1) ... Selecting previously unselected package python3-psycopg2. Preparing to unpack .../196-python3-psycopg2_2.9.1-1_s390x.deb ... Unpacking python3-psycopg2 (2.9.1-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../197-python3-pygments_2.7.1+dfsg-2.1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2.1) ... Selecting previously unselected package python3-rdflib. Preparing to unpack .../198-python3-rdflib_5.0.0-1.1build1_all.deb ... Unpacking python3-rdflib (5.0.0-1.1build1) ... Selecting previously unselected package python3-renderpm:s390x. Preparing to unpack .../199-python3-renderpm_3.6.1-1_s390x.deb ... Unpacking python3-renderpm:s390x (3.6.1-1) ... Selecting previously unselected package python3-reportlab-accel:s390x. Preparing to unpack .../200-python3-reportlab-accel_3.6.1-1_s390x.deb ... Unpacking python3-reportlab-accel:s390x (3.6.1-1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../201-python3-reportlab_3.6.1-1_all.deb ... Unpacking python3-reportlab (3.6.1-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../202-python3-setuptools_58.2.0-1_all.deb ... Unpacking python3-setuptools (58.2.0-1) ... Selecting previously unselected package python3-traceback2. Preparing to unpack .../203-python3-traceback2_1.4.0-6_all.deb ... Unpacking python3-traceback2 (1.4.0-6) ... Selecting previously unselected package python3-unittest2. Preparing to unpack .../204-python3-unittest2_1.1.0-7_all.deb ... Unpacking python3-unittest2 (1.1.0-7) ... Selecting previously unselected package samtools. Preparing to unpack .../205-samtools_1.13-4_s390x.deb ... Unpacking samtools (1.13-4) ... Selecting previously unselected package t-coffee. Preparing to unpack .../206-t-coffee_13.41.0.28bdc39+dfsg-4_s390x.deb ... Unpacking t-coffee (13.41.0.28bdc39+dfsg-4) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../207-texlive-fonts-recommended_2021.20210921-1_all.deb ... Unpacking texlive-fonts-recommended (2021.20210921-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../208-texlive-latex-base_2021.20210921-1_all.deb ... Unpacking texlive-latex-base (2021.20210921-1) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../209-libfontbox-java_1%3a1.8.16-2_all.deb ... Unpacking libfontbox-java (1:1.8.16-2) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../210-libpdfbox-java_1%3a1.8.16-2_all.deb ... Unpacking libpdfbox-java (1:1.8.16-2) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../211-texlive-latex-recommended_2021.20210921-1_all.deb ... Unpacking texlive-latex-recommended (2021.20210921-1) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../212-texlive-pictures_2021.20210921-1_all.deb ... Unpacking texlive-pictures (2021.20210921-1) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../213-texlive-latex-extra_2021.20210921-1_all.deb ... Unpacking texlive-latex-extra (2021.20210921-1) ... Selecting previously unselected package wise-data. Preparing to unpack .../214-wise-data_2.4.1-23_all.deb ... Unpacking wise-data (2.4.1-23) ... Selecting previously unselected package wise. Preparing to unpack .../215-wise_2.4.1-23_s390x.deb ... Unpacking wise (2.4.1-23) ... Selecting previously unselected package fasttree. Preparing to unpack .../216-fasttree_2.1.11-2_s390x.deb ... Unpacking fasttree (2.1.11-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../217-python3-scipy_1.7.1-1ubuntu1_s390x.deb ... Unpacking python3-scipy (1.7.1-1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-python-biopython-dummy. Preparing to unpack .../218-sbuild-build-depends-python-biopython-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-python-biopython-dummy (0.invalid.0) ... Setting up libhtscodecs2:s390x (1.1.1-3) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:s390x (1.5.3-1build1) ... Setting up liblmdb0:s390x (0.9.24-1build1) ... Setting up libgraphite2-3:s390x (1.3.14-1build1) ... Setting up liblcms2-2:s390x (2.12~rc1-2build1) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libpixman-1-0:s390x (0.40.0-1build3) ... Setting up mysql-common (5.8+1.0.5ubuntu3) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient21:s390x (8.0.27-0ubuntu0.21.10.1) ... Setting up libxau6:s390x (1:1.0.9-1build4) ... Setting up libhpdf-2.3.0:s390x (2.3.0+dfsg-1build1) ... Setting up libpsl5:s390x (0.21.0-1.2build1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-8ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up probcons (1.12-14) ... Setting up libicu67:s390x (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.39-3build1) ... Setting up libtexlua53:s390x (2021.20210626.59705-1) ... Setting up mafft (7.487-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.70.0-3) ... No schema files found: doing nothing. Setting up bwa (0.7.17-6) ... Setting up libboost-iostreams1.74.0:s390x (1.74.0-8ubuntu8) ... Setting up libboost-program-options1.74.0:s390x (1.74.0-8ubuntu8) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libijs-0.35:s390x (0.35-15build1) ... Setting up libdebhelper-perl (13.3.4ubuntu2) ... Setting up libbrotli1:s390x (1.0.9-2build4) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up phylip (1:3.697+dfsg-2) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:s390x (1.43.0-1build1) ... Setting up libmagic1:s390x (1:5.39-3build1) ... Setting up libdeflate0:s390x (1.7-2ubuntu2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.39-3build1) ... Setting up libnetpbm10 (2:10.0-15.4) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up muscle (1:3.8.1551-2build1) ... Setting up emboss-data (6.6.0+dfsg-9ubuntu1) ... Setting up libjbig0:s390x (2.1-3.1build2) ... Setting up t-coffee (13.41.0.28bdc39+dfsg-4) ... Setting up poppler-data (0.4.11-1) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2.1build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:s390x (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libexpat1-dev:s390x (2.4.1-3) ... Setting up libfreetype6:s390x (2.11.0+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up libjbig2dec0:s390x (0.19-3build1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libidn11:s390x (1.33-3build1) ... Setting up libteckit0:s390x (2.5.10+ds1-3) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:s390x (0.8-5ubuntu4) ... Setting up libdbus-1-3:s390x (1.12.20-2ubuntu2) ... Setting up libsigsegv2:s390x (2.13-1ubuntu2) ... Setting up libfribidi0:s390x (1.0.8-2ubuntu2) ... Setting up t1utils (1.41-4build1) ... Setting up libimagequant0:s390x (2.12.2-1.1build1) ... Setting up libpython3.10-minimal:s390x (3.10.0-3) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:s390x (0.6.1-2.1build1) ... Setting up ucf (3.0043) ... Setting up wise-data (2.4.1-23) ... Setting up libjpeg-turbo8:s390x (2.0.6-0ubuntu3) ... Setting up libkpathsea6:s390x (2021.20210626.59705-1) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2.1build1) ... Setting up libssh-4:s390x (0.9.6-1) ... Setting up libgfortran5:s390x (11.2.0-10ubuntu1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2ubuntu7) ... Setting up libcifpp1 (1.0.1-3) ... Setting up libmd0:s390x (1.0.4-1) ... Setting up libuchardet0:s390x (0.0.7-1build1) ... Setting up libmpdec3:s390x (2.5.1-2build1) ... Setting up clustalw (2.1+lgpl-7) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libmbedcrypto3:s390x (2.16.9-0.1ubuntu1) ... Setting up libopenjp2-7:s390x (2.4.0-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:s390x (2.7.4-1ubuntu2) ... Setting up fasttree (2.1.11-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Setting up python-matplotlib-data (3.3.4-2) ... Setting up libwebpmux3:s390x (0.6.1-2.1build1) ... Setting up libbsd0:s390x (0.11.3-1ubuntu3) ... Setting up mailcap (3.70ubuntu1) ... Setting up libelf1:s390x (0.185-2) ... Setting up dialign (2.2.1-11) ... Setting up libxml2:s390x (2.9.12+dfsg-5) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up libsynctex2:s390x (2021.20210626.59705-1) ... Setting up libpython3.9-stdlib:s390x (3.9.7-4) ... Setting up libpython3-stdlib:s390x (3.9.4-1ubuntu2) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libjs-underscore (1.9.1~dfsg-4) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libgs9-common (9.54.0~dfsg1-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up libpaper1:s390x (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:s390x (2:1.0.10-1build1) ... Setting up libdw1:s390x (0.185-2) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu4) ... Setting up liblapack3:s390x (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:s390x (1.14-3ubuntu2) ... Setting up libmbedx509-0:s390x (2.16.9-0.1ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up wise (2.4.1-23) ... Setting up libwebpdemux2:s390x (0.6.1-2.1build1) ... Setting up libedit2:s390x (3.1-20210910-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libmbedtls12:s390x (2.16.9-0.1ubuntu1) ... Setting up libavahi-common3:s390x (0.8-5ubuntu4) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:s390x (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up clustalo (1.2.4-7) ... Setting up dssp (4.0.0-2) ... Setting up python3.10-minimal (3.10.0-3) ... Setting up libldap-2.5-0:s390x (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:s390x (3.10.0-3) ... Setting up tex-common (6.17) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpython3.9:s390x (3.9.7-4) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libptexenc1:s390x (2021.20210626.59705-1) ... Setting up libraqm0:s390x (0.7.0-4) ... Setting up libjs-sphinxdoc (4.2.0-5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libx11-6:s390x (2:1.7.2-2) ... Setting up libtiff5:s390x (4.3.0-2) ... Setting up libfontconfig1:s390x (2.13.1-4.2ubuntu4) ... Setting up libsm6:s390x (2:1.2.3-1build1) ... Setting up libavahi-client3:s390x (0.8-5ubuntu4) ... Setting up python3.9 (3.9.7-4) ... Setting up liblbfgsb0:s390x (3.0+dfsg.3-9) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.10:s390x (3.10.0-3) ... Setting up flex (2.6.4-8build1) ... Setting up python3.10 (3.10.0-3) ... Setting up libxpm4:s390x (1:3.5.12-1build1) ... Setting up libxrender1:s390x (1:0.9.10-1build3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libpq5:s390x (14.0-1) ... Setting up libxext6:s390x (2:1.3.4-0ubuntu4) ... Setting up libpython3.9-dev:s390x (3.9.7-4) ... Setting up libcurl3-gnutls:s390x (7.74.0-1.3ubuntu2) ... Setting up python3 (3.9.4-1ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:s390x (1.16.0-5ubuntu2) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-mysqldb (1.4.6-1) ... Setting up python3-six (1.16.0-2) ... Setting up dh-autoreconf (20) ... Setting up python3-isodate (0.6.0-2) ... Setting up python3-pil:s390x (8.3.2-1) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-linecache2 (1.0.0-4ubuntu2) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:s390x (3.6.1-1) ... Setting up libgd3:s390x (2.3.0-2ubuntu1) ... Setting up python3-kiwisolver (1.3.2-1) ... Setting up python3-psycopg2 (2.9.1-1) ... Setting up libpython3.10-dev:s390x (3.10.0-3) ... Setting up netpbm (2:10.0-15.4) ... Setting up libxt6:s390x (1:1.2.0-1build1) ... Setting up python3-reportlab (3.6.1-1) ... Setting up libcups2:s390x (2.3.3op2-7ubuntu2) ... Setting up python3.10-dev (3.10.0-3) ... Setting up python3.9-dev (3.9.7-4) ... Setting up python3-rdflib (5.0.0-1.1build1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up emboss-lib (6.6.0+dfsg-9ubuntu1) ... Setting up python3-msgpack (1.0.2-2) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up python3-pkg-resources (58.2.0-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up dh-python (5.20211022.1) ... Setting up libhts3:s390x (1.13+ds-2) ... Setting up libxmu6:s390x (2:1.1.3-0ubuntu2) ... Setting up libpython3-dev:s390x (3.9.4-1ubuntu2) ... Setting up python3-renderpm:s390x (3.6.1-1) ... Setting up emboss (6.6.0+dfsg-9ubuntu1) ... Setting up python3-setuptools (58.2.0-1) ... Setting up libgs9:s390x (9.54.0~dfsg1-0ubuntu2) ... Setting up libxi6:s390x (2:1.8-1) ... Setting up python3-traceback2 (1.4.0-6) ... Setting up python3-all (3.9.4-1ubuntu2) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up libxaw7:s390x (2:1.0.13-1.1build1) ... Setting up ghostscript (9.54.0~dfsg1-0ubuntu2) ... Setting up python3-networkx (2.4-4ubuntu1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 Setting up samtools (1.13-4) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up libpython3-all-dev:s390x (3.9.4-1ubuntu2) ... Setting up python3-dev (3.9.4-1ubuntu2) ... Setting up python3-unittest2 (1.1.0-7) ... update-alternatives: using /usr/bin/python3-unit2 to provide /usr/bin/unit2 (unit2) in auto mode Setting up python3-numpy (1:1.20.2-1ubuntu1) ... Setting up texlive-binaries (2021.20210626.59705-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2021.20210921-1) ... /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-all-dev (3.9.4-1ubuntu2) ... Setting up python3-matplotlib (3.3.4-2) ... Setting up python3-scipy (1.7.1-1ubuntu1) ... Setting up python3-mmtf (1.1.2-3) ... Setting up texlive-latex-base (2021.20210921-1) ... Setting up texlive-latex-recommended (2021.20210921-1) ... Setting up hevea (2.35-1) ... Setting up texlive-pictures (2021.20210921-1) ... Setting up texlive-fonts-recommended (2021.20210921-1) ... Setting up texlive-latex-extra (2021.20210921-1) ... Setting up sbuild-build-depends-python-biopython-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for tex-common (6.17) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-161-generic s390x (s390x) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-10ubuntu1 gcc-11_11.2.0-10ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-10ubuntu1 libstdc++6_11.2.0-10ubuntu1 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-s390x-linux-gnu_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bwa_0.7.17-6 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 clustalo_1.2.4-7 clustalw_2.1+lgpl-7 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-10ubuntu1 dash_0.5.11+git20210120+802ebd4-2 debconf_1.5.78 debhelper_13.3.4ubuntu2 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-python_5.20211022.1 dh-strip-nondeterminism_1.12.0-2 dialign_2.2.1-11 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dssp_4.0.0-2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 emboss_6.6.0+dfsg-9ubuntu1 emboss-data_6.6.0+dfsg-9ubuntu1 emboss-lib_6.6.0+dfsg-9ubuntu1 fakeroot_1.25.3-1.1ubuntu3 fasttree_2.1.11-2 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 flex_2.6.4-8build1 fontconfig-config_2.13.1-4.2ubuntu4 fonts-lmodern_2.004.5-6.1 fonts-lyx_2.3.6-1 fonts-urw-base35_20200910-1 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-10ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-10ubuntu1 gcc-11-base_11.2.0-10ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 ghostscript_9.54.0~dfsg1-0ubuntu2 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hevea_2.35-1 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapache-pom-java_18-1 libapparmor1_3.0.3-0ubuntu2 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libargtable2-0_13-1.1 libasan6_11.2.0-10ubuntu1 libassuan0_2.5.5-1 libatomic1_11.2.0-10ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libavahi-client3_0.8-5ubuntu4 libavahi-common-data_0.8-5ubuntu4 libavahi-common3_0.8-5ubuntu4 libbinutils_2.37-7ubuntu1 libblas3_3.9.0-3ubuntu3 libblkid1_2.36.1-8ubuntu2 libboost-iostreams1.74.0_1.74.0-8ubuntu8 libboost-program-options1.74.0_1.74.0-8ubuntu8 libbrotli1_1.0.9-2build4 libbsd0_0.11.3-1ubuntu3 libbz2-1.0_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcairo2_1.16.0-5ubuntu2 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-10ubuntu1 libcifpp1_1.0.1-3 libcom-err2_1.46.3-1ubuntu3 libcommons-logging-java_1.2-2 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libcups2_2.3.3op2-7ubuntu2 libcurl3-gnutls_7.74.0-1.3ubuntu2 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdbus-1-3_1.12.20-2ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu2 libdeflate0_1.7-2ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-2 libedit2_3.1-20210910-1 libelf1_0.185-2 libexpat1_2.4.1-3 libexpat1-dev_2.4.1-3 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-2 libfontbox-java_1:1.8.16-2 libfontconfig1_2.13.1-4.2ubuntu4 libfreetype6_2.11.0+dfsg-1 libfribidi0_1.0.8-2ubuntu2 libgcc-11-dev_11.2.0-10ubuntu1 libgcc-s1_11.2.0-10ubuntu1 libgcrypt20_1.8.7-5ubuntu2 libgd3_2.3.0-2ubuntu1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-10ubuntu1 libglib2.0-0_2.70.0-3 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-10ubuntu1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1build1 libgs9_9.54.0~dfsg1-0ubuntu2 libgs9-common_9.54.0~dfsg1-0ubuntu2 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1ubuntu2 libhogweed6_3.7.3-1build1 libhpdf-2.3.0_2.3.0+dfsg-1build1 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libice6_2:1.0.10-1build1 libicu67_67.1-7ubuntu1 libidn11_1.33-3build1 libidn2-0_2.3.2-2 libijs-0.35_0.35-15build1 libimagequant0_2.12.2-1.1build1 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libitm1_11.2.0-10ubuntu1 libjbig0_2.1-3.1build2 libjbig2dec0_0.19-3build1 libjpeg-turbo8_2.0.6-0ubuntu3 libjpeg8_8c-2ubuntu8 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui_1.12.1+dfsg-8 libjs-sphinxdoc_4.2.0-5 libjs-underscore_1.9.1~dfsg-4 libjson-c5_0.15-2build3 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkpathsea6_2021.20210626.59705-1 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblapack3_3.9.0-3ubuntu3 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.12~rc1-2build1 libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1 liblmdb0_0.9.24-1build1 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmbedcrypto3_2.16.9-0.1ubuntu1 libmbedtls12_2.16.9-0.1ubuntu1 libmbedx509-0_2.16.9-0.1ubuntu1 libmd0_1.0.4-1 libmount1_2.36.1-8ubuntu2 libmpc3_1.2.1-1 libmpdec3_2.5.1-2build1 libmpfr6_4.1.0-3build2 libmysqlclient21_8.0.27-0ubuntu0.21.10.1 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnetpbm10_2:10.0-15.4 libnettle8_3.7.3-1build1 libnghttp2-14_1.43.0-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libopenjp2-7_2.4.0-3 libp11-kit0_0.24.0-5 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpaper-utils_1.1.28build1 libpaper1_1.1.28build1 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libpdfbox-java_1:1.8.16-2 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1build1 libpixman-1-0_0.40.0-1build3 libpng16-16_1.6.37-3build4 libpq5_14.0-1 libprocps8_2:3.3.17-5ubuntu3 libpsl5_0.21.0-1.2build1 libptexenc1_2021.20210626.59705-1 libpython3-all-dev_3.9.4-1ubuntu2 libpython3-dev_3.9.4-1ubuntu2 libpython3-stdlib_3.9.4-1ubuntu2 libpython3.10_3.10.0-3 libpython3.10-dev_3.10.0-3 libpython3.10-minimal_3.10.0-3 libpython3.10-stdlib_3.10.0-3 libpython3.9_3.9.7-4 libpython3.9-dev_3.9.7-4 libpython3.9-minimal_3.9.7-4 libpython3.9-stdlib_3.9.7-4 libraqm0_0.7.0-4 libreadline8_8.1-2build1 librtmp1_2.4+20151223.gitfa8646d.1-2build3 libsasl2-2_2.1.27+dfsg-2.1build1 libsasl2-modules-db_2.1.27+dfsg-2.1build1 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsepol1_3.1-1ubuntu2 libsigsegv2_2.13-1ubuntu2 libsm6_2:1.2.3-1build1 libsmartcols1_2.36.1-8ubuntu2 libsqlite3-0_3.36.0-2 libss2_1.46.3-1ubuntu3 libssh-4_0.9.6-1 libssl1.1_1.1.1l-1ubuntu1 libstdc++-11-dev_11.2.0-10ubuntu1 libstdc++6_11.2.0-10ubuntu1 libsub-override-perl_0.09-2 libsynctex2_2021.20210626.59705-1 libsystemd0_248.3-1ubuntu8 libtasn1-6_4.17.0-2 libteckit0_2.5.10+ds1-3 libtexlua53_2021.20210626.59705-1 libtiff5_4.3.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libubsan1_11.2.0-10ubuntu1 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu2 libwebp6_0.6.1-2.1build1 libwebpdemux2_0.6.1-2.1build1 libwebpmux3_0.6.1-2.1build1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1build4 libxaw7_2:1.0.13-1.1build1 libxcb-render0_1.14-3ubuntu2 libxcb-shm0_1.14-3ubuntu2 libxcb1_1.14-3ubuntu2 libxdmcp6_1:1.1.3-0ubuntu4 libxext6_2:1.3.4-0ubuntu4 libxi6_2:1.8-1 libxml2_2.9.12+dfsg-5 libxmu6_2:1.1.3-0ubuntu2 libxpm4_1:3.5.12-1build1 libxrender1_1:0.9.10-1build3 libxt6_1:1.2.0-1build1 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.13.0-19.19 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 mafft_7.487-1 mailcap_3.70ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 media-types_4.0.0 mime-support_3.66 mount_2.36.1-8ubuntu2 muscle_1:3.8.1551-2build1 mysql-common_5.8+1.0.5ubuntu3 ncbi-blast+_2.11.0+ds-1 ncbi-data_6.1.20170106+dfsg1-9 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 netpbm_2:10.0-15.4 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 phylip_1:3.697+dfsg-2 pinentry-curses_1.1.1-1build1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 poppler-data_0.4.11-1 prank_0.0.170427+dfsg-3 preview-latex-style_12.2-1ubuntu1 probcons_1.12-14 procps_2:3.3.17-5ubuntu3 python-matplotlib-data_3.3.4-2 python3_3.9.4-1ubuntu2 python3-all_3.9.4-1ubuntu2 python3-all-dev_3.9.4-1ubuntu2 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-0ubuntu1 python3-dev_3.9.4-1ubuntu2 python3-distutils_3.9.7-1 python3-isodate_0.6.0-2 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.7-1 python3-linecache2_1.0.0-4ubuntu2 python3-matplotlib_3.3.4-2 python3-minimal_3.9.4-1ubuntu2 python3-mmtf_1.1.2-3 python3-msgpack_1.0.2-2 python3-mysqldb_1.4.6-1 python3-networkx_2.4-4ubuntu1 python3-numpy_1:1.20.2-1ubuntu1 python3-pil_8.3.2-1 python3-pkg-resources_58.2.0-1 python3-psycopg2_2.9.1-1 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-rdflib_5.0.0-1.1build1 python3-renderpm_3.6.1-1 python3-reportlab_3.6.1-1 python3-reportlab-accel_3.6.1-1 python3-scipy_1.7.1-1ubuntu1 python3-setuptools_58.2.0-1 python3-six_1.16.0-2 python3-traceback2_1.4.0-6 python3-unittest2_1.1.0-7 python3.10_3.10.0-3 python3.10-dev_3.10.0-3 python3.10-minimal_3.10.0-3 python3.9_3.9.7-4 python3.9-dev_3.9.7-4 python3.9-minimal_3.9.7-4 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 samtools_1.13-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biopython-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 t-coffee_13.41.0.28bdc39+dfsg-4 t1utils_1.41-4build1 tar_1.34+dfsg-1build2 tex-common_6.17 texlive-base_2021.20210921-1 texlive-binaries_2021.20210626.59705-1 texlive-fonts-recommended_2021.20210921-1 texlive-latex-base_2021.20210921-1 texlive-latex-extra_2021.20210921-1 texlive-latex-recommended_2021.20210921-1 texlive-pictures_2021.20210921-1 ttf-bitstream-vera_1.10-8.1 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 wise_2.4.1-23 wise-data_2.4.1-23 x11-common_1:7.7+23ubuntu1 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Oct 22 19:22:40 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biopython_1.79+dfsg-1.dsc dpkg-source: info: extracting python-biopython in /<>/python-biopython-1.79+dfsg dpkg-source: info: unpacking python-biopython_1.79+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.79+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying mkdssp4.patch dpkg-source: info: applying adjust-test_GraphicsBitmaps.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22337888 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22337888 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22337888 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.79+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/python-biopython-1.79+dfsg' dh_auto_clean install -d /<>/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --clean -i python{version} -p "3.10 3.9" I: pybuild base:232: python3.10 setup.py clean running clean removing '/<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build' (and everything under it) 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:232: python3.9 setup.py clean running clean removing '/<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/<>/python-biopython-1.79+dfsg/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/<>/python-biopython-1.79+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/<>/python-biopython-1.79+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild install -d /<>/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p "3.10 3.9" I: pybuild base:232: python3.10 setup.py config running config I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>/python-biopython-1.79+dfsg' dh_auto_build pybuild --build -i python{version} -p "3.10 3.9" I: pybuild base:232: /usr/bin/python3.10 setup.py build running build running build_py creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/LogisticRegression.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/Seq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/_utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/kNN.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqFeature.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/bgzf.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/MaxEntropy.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqRecord.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/pairwise2.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/NaiveBayes.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/File.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Alphabet creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Application copying Bio/Application/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Application creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/CAPS creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Compass creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Map creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Medline creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/PDB/mmcifio.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PICIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SASA.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Chain.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_data.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/TogoWS creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniGene creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/Loader.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/DBUtils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/Align/_aligners.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-s390x-3.10 creating build/temp.linux-s390x-3.10/Bio creating build/temp.linux-s390x-3.10/Bio/Align s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Align/_aligners.c -o build/temp.linux-s390x-3.10/Bio/Align/_aligners.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/Align/_aligners.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so building 'Bio.cpairwise2' extension s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/cpairwise2module.c -o build/temp.linux-s390x-3.10/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.10/Python.h:131, from Bio/cpairwise2module.c:16: /usr/include/python3.10/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/cpairwise2module.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-s390x-3.10/Bio/Nexus s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Nexus/cnexus.c -o build/temp.linux-s390x-3.10/Bio/Nexus/cnexus.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/Nexus/cnexus.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-s390x-3.10/Bio/PDB creating build/temp.linux-s390x-3.10/Bio/PDB/QCPSuperimposer s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-s390x-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-s390x-3.10/Bio/motifs s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/motifs/_pwm.c -o build/temp.linux-s390x-3.10/Bio/motifs/_pwm.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/motifs/_pwm.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-s390x-3.10/Bio/Cluster s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/cluster.c -o build/temp.linux-s390x-3.10/Bio/Cluster/cluster.o s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/clustermodule.c -o build/temp.linux-s390x-3.10/Bio/Cluster/clustermodule.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/Cluster/cluster.o build/temp.linux-s390x-3.10/Bio/Cluster/clustermodule.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so building 'Bio.PDB.kdtrees' extension s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/kdtrees.c -o build/temp.linux-s390x-3.10/Bio/PDB/kdtrees.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/PDB/kdtrees.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-s390x-3.10/Bio/SeqIO s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-s390x-3.10/Bio/SeqIO/_twoBitIO.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.10/Bio/SeqIO/_twoBitIO.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/LogisticRegression.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Seq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/_utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/kNN.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqFeature.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/bgzf.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MaxEntropy.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqRecord.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/pairwise2.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/NaiveBayes.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/File.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Application copying Bio/Application/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Application creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/PDB/mmcifio.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PICIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/SASA.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Chain.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_data.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeq.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/__init__.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/Loader.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/DBUtils.py -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Align/_aligners.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs creating /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build/temp.linux-s390x-3.9 creating build/temp.linux-s390x-3.9/Bio creating build/temp.linux-s390x-3.9/Bio/Align s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Align/_aligners.c -o build/temp.linux-s390x-3.9/Bio/Align/_aligners.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/Align/_aligners.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so building 'Bio.cpairwise2' extension s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/cpairwise2module.c -o build/temp.linux-s390x-3.9/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.9/Python.h:154, from Bio/cpairwise2module.c:16: /usr/include/python3.9/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/cpairwise2module.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-s390x-3.9/Bio/Nexus s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Nexus/cnexus.c -o build/temp.linux-s390x-3.9/Bio/Nexus/cnexus.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/Nexus/cnexus.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-s390x-3.9/Bio/PDB creating build/temp.linux-s390x-3.9/Bio/PDB/QCPSuperimposer s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-s390x-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-s390x-3.9/Bio/motifs s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/motifs/_pwm.c -o build/temp.linux-s390x-3.9/Bio/motifs/_pwm.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/motifs/_pwm.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-s390x-3.9/Bio/Cluster s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/cluster.c -o build/temp.linux-s390x-3.9/Bio/Cluster/cluster.o s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/clustermodule.c -o build/temp.linux-s390x-3.9/Bio/Cluster/clustermodule.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/Cluster/cluster.o build/temp.linux-s390x-3.9/Bio/Cluster/clustermodule.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so building 'Bio.PDB.kdtrees' extension s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/kdtrees.c -o build/temp.linux-s390x-3.9/Bio/PDB/kdtrees.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/PDB/kdtrees.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-s390x-3.9/Bio/SeqIO s390x-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-s390x-3.9/Bio/SeqIO/_twoBitIO.o s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.79+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.9/Bio/SeqIO/_twoBitIO.o -o /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so cd Doc && make make[2]: Entering directory '/<>/python-biopython-1.79+dfsg/Doc' sed "s/\@VERSION\@/1.79/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:744: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:820: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:832: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:568: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:574: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:578: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:581: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:584: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:591: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:665: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:786: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:807: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:951: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1404: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:949: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:957: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1095: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1316: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1688: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1701: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1774: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1805: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1808: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1809: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1835: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1835: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1864: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1968: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:2058: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2486: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2763: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2763: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3319: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3415: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:286: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:288: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:303: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:449: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:465: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1496: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1501: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1525: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:276: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:285: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:422: Warning: Undefined label: 'sec:hetero_problems' ./Tutorial/chapter_pdb.tex:467: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:484: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:611: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:658: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:970: Warning: Undefined label: 'table:ic-attribs' ./Tutorial/chapter_pdb.tex:1015: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:715: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:786: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:164: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:165: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:541: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:687: Warning: Undefined citation: 'matys2003' ./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:277: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:345: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:555: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:646: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:659: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:800: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancematrix' ./Tutorial/chapter_cluster.tex:821: Warning: Undefined label: 'sec:clustercentroids' ./Tutorial/chapter_cluster.tex:844: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:869: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:898: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:920: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:952: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:75: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:212: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:212: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:274: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:274: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:276: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:276: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:286: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:290: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:298: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: Undefined citation: 'vanderauwera2009' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:64: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:488: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:1012: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:204: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:336: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:441: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:455: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:641: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:800: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:822: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:824: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:905: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:1021: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:1413: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1431: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1432: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1433: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1434: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1635: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_advanced.tex:36: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_advanced.tex:162: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:32: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:85: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_contributing.tex:101: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_appendix.tex:91: Warning: Undefined label: 'sec:SeqIO_compressed' HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:584: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:957: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) hevea -exec ./version.sh -exec xxdate.exe -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial.htoc:362: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:286: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:219: Warning: line too long ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:531: Warning: line too long ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:574: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:574: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:695: Warning: line too long ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:710: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:742: Warning: line too long ./Tutorial/chapter_seq_annot.tex:749: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:749: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:752: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:907: Warning: line too long ./Tutorial/chapter_seq_annot.tex:924: Warning: line too long ./Tutorial/chapter_seq_annot.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:965: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:965: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:966: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:966: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:151: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:199: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:249: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:553: Warning: line too long ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:575: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:575: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:584: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:745: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:745: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:822: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:822: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:853: Warning: line too long ./Tutorial/chapter_seqio.tex:854: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:854: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:937: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:937: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1029: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1029: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1128: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1128: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1201: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:957: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1071: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1071: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1517: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1517: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1549: Warning: line too long ./Tutorial/chapter_align.tex:1551: Warning: line too long ./Tutorial/chapter_align.tex:1569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1754: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1754: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2014: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2409: Warning: line too long ./Tutorial/chapter_align.tex:2425: Warning: line too long ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2490: Warning: line too long ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2695: Warning: line too long ./Tutorial/chapter_align.tex:2696: Warning: line too long ./Tutorial/chapter_align.tex:2697: Warning: line too long ./Tutorial/chapter_align.tex:2727: Warning: line too long ./Tutorial/chapter_align.tex:2728: Warning: line too long ./Tutorial/chapter_align.tex:2729: Warning: line too long ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:437: Warning: line too long ./Tutorial/chapter_blast.tex:439: Warning: line too long ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:453: Warning: Image in text ./Tutorial/chapter_blast.tex:469: Warning: Image in text ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:611: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:611: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:728: Warning: line too long ./Tutorial/chapter_searchio.tex:730: Warning: line too long ./Tutorial/chapter_searchio.tex:733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:751: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:751: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:961: Warning: line too long ./Tutorial/chapter_searchio.tex:968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1077: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1077: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:943: Warning: line too long ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:31: Warning: line too long ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:289: Warning: Image in text ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:992: Warning: overfull line in array : array too wide ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:186: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:186: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:346: Warning: line too long ./Tutorial/chapter_phylo.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:360: Warning: Image in text ./Tutorial/chapter_phylo.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:576: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:576: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:701: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:701: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:209: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:209: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:218: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:218: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:551: Warning: line too long ./Tutorial/chapter_motifs.tex:557: Warning: line too long ./Tutorial/chapter_motifs.tex:559: Warning: line too long ./Tutorial/chapter_motifs.tex:568: Warning: line too long ./Tutorial/chapter_motifs.tex:572: Warning: line too long ./Tutorial/chapter_motifs.tex:574: Warning: line too long ./Tutorial/chapter_motifs.tex:583: Warning: line too long ./Tutorial/chapter_motifs.tex:585: Warning: line too long ./Tutorial/chapter_motifs.tex:586: Warning: line too long ./Tutorial/chapter_motifs.tex:588: Warning: line too long ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:786: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:786: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:790: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:790: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:791: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:791: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:793: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:793: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:794: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:794: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:907: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:907: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:959: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:959: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1064: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1064: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:270: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:270: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:518: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:518: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:538: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:538: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:682: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:682: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:710: Warning: line too long ./Tutorial/chapter_cluster.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:747: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:893: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:893: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:26: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_learning.tex:36: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_learning.tex:37: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber-valign"] ./Tutorial/chapter_learning.tex:37: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_learning.tex:39: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber-valign"] ./Tutorial/chapter_learning.tex:39: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_learning.tex:70: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:408: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_learning.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: Image in text ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: Image in text ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1035: Warning: line too long ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1110: Warning: Image in text ./Tutorial/chapter_graphics.tex:1110: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1125: Warning: line too long ./Tutorial/chapter_graphics.tex:1190: Warning: Image in text ./Tutorial/chapter_graphics.tex:1190: Warning: '_' occurring outside math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:250: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:250: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:450: Warning: line too long ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:559: Warning: line too long ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:653: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:684: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:803: Warning: line too long ./Tutorial/chapter_cookbook.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:825: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:825: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:904: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1028: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1028: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1050: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1091: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1091: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1124: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1158: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1158: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1206: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1260: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1260: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1336: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1358: Warning: line too long ./Tutorial/chapter_cookbook.tex:1359: Warning: line too long ./Tutorial/chapter_cookbook.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1407: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1523: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1523: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1579: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1579: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1736: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:222: Warning: line too long ./Tutorial/chapter_testing.tex:275: Warning: line too long ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:172: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:172: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:11: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial.tex:127: Warning: line too long ./Tutorial.tex:138: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:138: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:142: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:216: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:216: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:547: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:286: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:744: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:219: Warning: line too long ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:531: Warning: line too long ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:574: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:574: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:695: Warning: line too long ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:710: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:742: Warning: line too long ./Tutorial/chapter_seq_annot.tex:749: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:749: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:752: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:820: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:832: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:907: Warning: line too long ./Tutorial/chapter_seq_annot.tex:924: Warning: line too long ./Tutorial/chapter_seq_annot.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:965: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:965: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:966: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:966: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:151: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:199: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:249: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:553: Warning: line too long ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:568: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:574: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:575: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:575: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:578: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:581: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:584: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:591: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:723: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:745: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:745: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:786: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:807: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:822: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:822: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:853: Warning: line too long ./Tutorial/chapter_seqio.tex:854: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:854: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:937: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:937: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:951: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1029: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1029: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1128: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1128: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1201: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1404: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:949: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:957: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1071: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1071: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1095: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1316: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1517: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1517: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1549: Warning: line too long ./Tutorial/chapter_align.tex:1551: Warning: line too long ./Tutorial/chapter_align.tex:1569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1688: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1701: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1731: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1754: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1754: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1774: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1809: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1906: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1926: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1990: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2014: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2409: Warning: line too long ./Tutorial/chapter_align.tex:2425: Warning: line too long ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2486: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2490: Warning: line too long ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2695: Warning: line too long ./Tutorial/chapter_align.tex:2696: Warning: line too long ./Tutorial/chapter_align.tex:2697: Warning: line too long ./Tutorial/chapter_align.tex:2727: Warning: line too long ./Tutorial/chapter_align.tex:2728: Warning: line too long ./Tutorial/chapter_align.tex:2729: Warning: line too long ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2763: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2763: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3415: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:286: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:288: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:437: Warning: line too long ./Tutorial/chapter_blast.tex:439: Warning: line too long ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:453: Warning: Image in text ./Tutorial/chapter_blast.tex:465: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_blast.tex:469: Warning: Image in text ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:611: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:611: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:728: Warning: line too long ./Tutorial/chapter_searchio.tex:730: Warning: line too long ./Tutorial/chapter_searchio.tex:733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:739: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:751: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:751: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:961: Warning: line too long ./Tutorial/chapter_searchio.tex:968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1018: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1019: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1026: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1052: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1077: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1077: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1170: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:321: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:943: Warning: line too long ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:985: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1496: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1501: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1525: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:31: Warning: line too long ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:276: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:285: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:289: Warning: Image in text ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:422: Warning: Undefined label: 'sec:hetero_problems' ./Tutorial/chapter_pdb.tex:467: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:484: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:611: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:658: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:970: Warning: Undefined label: 'table:ic-attribs' ./Tutorial/chapter_pdb.tex:992: Warning: overfull line in array : array too wide ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:1015: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:186: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:186: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:346: Warning: line too long ./Tutorial/chapter_phylo.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:360: Warning: Image in text ./Tutorial/chapter_phylo.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:576: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:576: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:701: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:701: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:715: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:786: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:164: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:165: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:209: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:209: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:218: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:218: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:541: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:551: Warning: line too long ./Tutorial/chapter_motifs.tex:557: Warning: line too long ./Tutorial/chapter_motifs.tex:559: Warning: line too long ./Tutorial/chapter_motifs.tex:568: Warning: line too long ./Tutorial/chapter_motifs.tex:572: Warning: line too long ./Tutorial/chapter_motifs.tex:574: Warning: line too long ./Tutorial/chapter_motifs.tex:583: Warning: line too long ./Tutorial/chapter_motifs.tex:585: Warning: line too long ./Tutorial/chapter_motifs.tex:586: Warning: line too long ./Tutorial/chapter_motifs.tex:588: Warning: line too long ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:687: Warning: Undefined citation: 'matys2003' ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:786: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:786: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:790: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:790: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:791: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:791: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:793: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:793: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:794: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:794: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:907: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:907: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:959: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:959: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1064: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1064: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1312: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:270: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:270: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:276: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:381: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:518: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:518: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:524: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:538: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:538: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:558: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:659: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:682: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:682: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:710: Warning: line too long ./Tutorial/chapter_cluster.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:747: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:772: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:797: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancematrix' ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:821: Warning: Undefined label: 'sec:clustercentroids' ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:831: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:837: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:844: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:869: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:893: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:893: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:897: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:898: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:920: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:928: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:947: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:969: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:984: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:26: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_learning.tex:36: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_learning.tex:37: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber-valign"] ./Tutorial/chapter_learning.tex:37: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_learning.tex:39: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber-valign"] ./Tutorial/chapter_learning.tex:39: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:70: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:75: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:212: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:212: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:274: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:274: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:276: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:276: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:286: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:290: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:408: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_learning.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: Undefined citation: 'vanderauwera2009' ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:64: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:488: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:564: Warning: Image in text ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: Image in text ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1012: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_graphics.tex:1035: Warning: line too long ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1110: Warning: Image in text ./Tutorial/chapter_graphics.tex:1110: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1125: Warning: line too long ./Tutorial/chapter_graphics.tex:1190: Warning: Image in text ./Tutorial/chapter_graphics.tex:1190: Warning: '_' occurring outside math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:204: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:250: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:250: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:251: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:336: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:441: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:450: Warning: line too long ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:455: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:559: Warning: line too long ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:641: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:653: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:684: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:763: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:765: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:798: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:800: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:803: Warning: line too long ./Tutorial/chapter_cookbook.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:822: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:824: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:825: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:825: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:904: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:905: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1021: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:1028: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1028: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1050: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1091: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1091: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1124: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1158: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1158: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1206: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1260: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1260: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1336: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1358: Warning: line too long ./Tutorial/chapter_cookbook.tex:1359: Warning: line too long ./Tutorial/chapter_cookbook.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1407: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1413: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1431: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1432: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1433: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1434: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1523: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1523: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1579: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1579: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1635: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1696: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1736: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:222: Warning: line too long ./Tutorial/chapter_testing.tex:275: Warning: line too long ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:36: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_advanced.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:162: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_advanced.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:172: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:172: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:215: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:216: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_advanced.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:11: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:32: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:85: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_contributing.tex:101: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:91: Warning: Undefined label: 'sec:SeqIO_compressed' ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial.tex:127: Warning: line too long ./Tutorial.tex:138: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:138: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:142: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:216: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:216: Warning: Application of '\"' on 'u' failed Fixpoint reached in 2 step(s) pdflatex --shell-escape "\def\bpversion{1.79}\input{Tutorial}" This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))/usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file Tutorial.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} <./images/biopython_logo.pdf>]pdfTeX warning (ext4): destination with the same identifier (name{page.1}) has been already us ed, duplicate ignored \relax l.102 \include{Tutorial/chapter_introduction} [1] (./Tutorial/chapter_introduction.tex Chapter 1. [2] LaTeX Warning: Citation `cock2009' on page 3 undefined on input line 91. LaTeX Warning: Citation `chapman2000' on page 3 undefined on input line 95. LaTeX Warning: Citation `hamelryck2003a' on page 3 undefined on input line 96. LaTeX Warning: Citation `dehoon2004' on page 3 undefined on input line 97. LaTeX Warning: Citation `pritchard2006' on page 3 undefined on input line 98. LaTeX Warning: Citation `talevich2012' on page 3 undefined on input line 99. LaTeX Warning: Citation `cock2010' on page 3 undefined on input line 100. [3] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default-pyg-prefix.pygstyle) (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [4 <./images/biopython_logo_old.jpg>] LaTeX Warning: Reference `sec:seq-comparison' on page 5 undefined on input line 186. Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . LaTeX Warning: Reference `sec:appendix-handles' on page 5 undefined on input li ne 192. [5]) [6] (./Tutorial/chapter_quick_start.tex Chapter 2. LaTeX Warning: Reference `chapter:cookbook' on page 7 undefined on input line 1 4. LaTeX Warning: Reference `chapter:advanced' on page 7 undefined on input line 1 4. LaTeX Warning: Reference `chapter:seq_objects' on page 7 undefined on input lin e 19. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [7]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 8 undefined on input line 45. LaTeX Warning: Reference `sec:sequence-parsing' on page 8 undefined on input li ne 65. LaTeX Warning: Reference `chapter:entrez' on page 8 undefined on input line 65. LaTeX Warning: Reference `chapter:uniprot' on page 8 undefined on input line 65 . LaTeX Warning: Reference `sec:align_clustal' on page 8 undefined on input line 65. [8] LaTeX Warning: Reference `chapter:seqio' on page 9 undefined on input line 72. LaTeX Warning: Reference `sec:connecting-with-biological-databases' on page 9 u ndefined on input line 79. (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B021334678185567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [9]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 10 undefined on input line 145 . LaTeX Warning: Reference `chapter:align' on page 10 undefined on input line 145 . LaTeX Warning: Reference `chapter:cookbook' on page 10 undefined on input line 150. LaTeX Warning: Reference `chapter:entrez' on page 10 undefined on input line 15 8. LaTeX Warning: Reference `chapter:uniprot' on page 10 undefined on input line 1 59. [10] LaTeX Warning: Reference `chapter:cookbook' on page 11 undefined on input line 169. ) [11] (./Tutorial/chapter_seq_objects.tex Chapter 3. LaTeX Warning: Reference `chapter:seq_annot' on page 12 undefined on input line 5. LaTeX Warning: Reference `chapter:seqio' on page 12 undefined on input line 5. (./_minted-Tutorial/674F0422DD30F7C4B4E808093732659367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55B4E33A5EF0F1A0B51702F25755DA0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [12] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/533611943FA3AA7E144BE9661F0999DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99F306D6A0BEAEBD98D7199579E70E7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:mutable-seq' on page 13 undefined on input line 8 5. (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E9762250467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [13]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D938642067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 14 undefined on input l ine 154. LaTeX Warning: Reference `chapter:seqio' on page 14 undefined on input line 156 . (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C27067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/06A7ACEFB26AA7DD59C8205B22EBC3D967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [14]) (./_minted-Tutorial/8FDF9BC99C1716A778F3C36AB623FB7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D39467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [15]) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF1767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 16 undefined on input line 268. (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C875367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [16]) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B38667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-module-functions' on page 17 undefined on inp ut line 343. (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [17]) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD6467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/183C1BBBB8FD6ED15EF6C8F03298A19767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B5599067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 18 undefined on input li ne 457. LaTeX Warning: Reference `sec:seq-module-functions' on page 18 undefined on inp ut line 463. [18] (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [19]) (./_minted-Tutorial/06DBC59F2EAD33E7A95188853787661567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-to-string' on page 20 undefined on input line 586. [20] (./_minted-Tutorial/7F9F7641B195E2CACA3F77158DBE190C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/04626286E6AB345CB89BE7B7A049C33867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE45167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/39AA48793A64869F7458C1A2A0D69D2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [21]) (./_minted-Tutorial/3F2DB933A33BDAA3DB2299F2701B61CB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-to-string' on page 22 undefined on input line 683. (./_minted-Tutorial/8009655B8BB14028E5E1BDE9BD4B27E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1107FF2DF5C0B4B87F12506011FBD20867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [22]) (./_minted-Tutorial/6BB61362276E8D90F0EB6BF36B274A6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 23 undefined on input line 744 . (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [23] (./Tutorial/chapter_seq_annot.tex Chapter 4. LaTeX Warning: Reference `chapter:seq_objects' on page 24 undefined on input li ne 4. LaTeX Warning: Reference `chapter:seqio' on page 24 undefined on input line 4. (./_minted-Tutorial/B805770413E9199C6B5EFC63A944737F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_objects' on page 24 undefined on input li ne 21. LaTeX Warning: Reference `chapter:seqio' on page 24 undefined on input line 21. LaTeX Warning: Reference `sec:FASTQ-filtering-example' on page 24 undefined on input line 34. [24] LaTeX Warning: Reference `sec:seq_features' on page 25 undefined on input line 38. LaTeX Warning: Reference `chapter:seqio' on page 25 undefined on input line 48. (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D40767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [25]) (./_minted-Tutorial/510764EE0BB38AD6C688E719896775070C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `chapter:quick_start' on page 26 undefined on input li ne 131. LaTeX Warning: Reference `chapter:seqio' on page 26 undefined on input line 133 . (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D84982267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD208567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D90C640781732628151051B15D85C 9070A.pygtex [26]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A0C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 27 undefined on input line 212 . (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA60167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [27]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F92667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq_features' on page 28 undefined on input line 276. LaTeX Warning: Reference `sec:locations' on page 28 undefined on input line 285 . LaTeX Warning: Reference `sec:locations' on page 28 undefined on input line 293 . [28] [29] (./_minted-Tutorial/2D75ABBC1FC42B7382049A62E37C0E4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [30]) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/269F8765456CC9B88BDF6A41BC90473E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5B76E9A877CC1A76394FE84519866D4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [31]) LaTeX Warning: Reference `sec:locations' on page 32 undefined on input line 525 . (./_minted-Tutorial/18A924CDEFC2ADA66753F94C892F56B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F9C8B11D1FC2422B35CE8DD6A855273967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/86F990EF8173435624D9A400AC90995967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [32]) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E392067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-comparison' on page 33 undefined on input lin e 627. LaTeX Warning: Reference `sec:locations' on page 33 undefined on input line 635 . (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [33]) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F968967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 34 undefined on input line 675 . LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 34 undefined on i nput line 678. (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B234067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [34]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [35]) (./_minted-Tutorial/7693A79AF1B5C3B342CEF51858B48A8567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186CFAEA86C7F6492ED0972D7BC46FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D245767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 36 undefined on input l ine 820. (./_minted-Tutorial/E4EE1174D845FF0CABBFC735D0B5DF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:FASTQ-slicing-off-primer' on page 36 undefined on input line 832. LaTeX Warning: Reference `sec:FASTQ-slicing-off-adaptor' on page 36 undefined o n input line 833. [36] LaTeX Warning: Reference `chapter:seqio' on page 37 undefined on input line 846 . (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF171850166967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [37]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A8312A90F6B97A21EE1619F9A898ED3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [38] (./_minted-Tutorial/023FBCDB71B9572D8D436D0AA1193B6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [39] (./Tutorial/chapter_seqio.tex Chapter 5. LaTeX Warning: Reference `chapter:quick_start' on page 40 undefined on input li ne 4. LaTeX Warning: Reference `chapter:seq_annot' on page 40 undefined on input line 4. (./_minted-Tutorial/DBAB0A8061EF77EEA47B4AA55BAA583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 40 undefined on input line 13. LaTeX Warning: Reference `chapter:seq_objects' on page 40 undefined on input li ne 13. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 40 undefined on in put line 15. LaTeX Warning: Reference `sec:SeqIO_Online' on page 40 undefined on input line 23. LaTeX Warning: Reference `sec:appendix-handles' on page 40 undefined on input l ine 23. (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB67814FA033DCB1376922271CBD58A8 A4A36.pygtex [40]) LaTeX Warning: Reference `sec:sequence-parsing' on page 41 undefined on input l ine 44. (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE50095414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:sequence-parsing-plus-pylab' on page 41 undefined on input line 69. (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F114FA033DCB1376922271CBD58A8 A4A36.pygtex [41]) (./_minted-Tutorial/C82398A4A04383A063D2E6488112305214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC049107360C640781732628151051B15D85C 9070A.pygtex) [42] LaTeX Warning: Reference `chapter:seq_annot' on page 43 undefined on input line 151. (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C260C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD16222114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD8214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [43]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E7345114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC3950C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/693D94A81EEABF91A72754E60DEB360614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/AD214E544DAF411AB89A7DCBECDEFFD10C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/E5529B4EE3E3DFEBAAC551606BEAEC6114FA033DCB1376922271CBD58A8 A4A36.pygtex [44]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C9167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:writing-sequence-files' on page 45 undefined on i nput line 310. (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:appendix-handles' on page 45 undefined on input l ine 333. (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [45]) (./_minted-Tutorial/AFDE811EFDEDCFD9BBD0CAA9BF7F35C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C0967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-index-bgzf' on page 46 undefined on input l ine 401. LaTeX Warning: Reference `sec:efetch' on page 46 undefined on input line 417. [46] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD47614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E42159900C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D714FA033DCB1376922271CBD58A8 A4A36.pygtex [47]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D0C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `chapter:entrez' on page 48 undefined on input line 50 7. LaTeX Warning: Reference `sec:entrez-guidelines' on page 48 undefined on input line 507. LaTeX Warning: Reference `chapter:uniprot' on page 48 undefined on input line 5 12. (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA60C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3A5DDBC5C437B752848EE8AB449D41AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [48]) LaTeX Warning: Reference `sec:seqio_todict' on page 49 undefined on input line 568. LaTeX Warning: Reference `sec:SeqIO-index' on page 49 undefined on input line 5 74. LaTeX Warning: Reference `sec:SeqIO-index-db' on page 49 undefined on input lin e 578. LaTeX Warning: Reference `sec:SeqIO-indexing-discussion' on page 49 undefined o n input line 581. LaTeX Warning: Reference `sec:SeqIO-index' on page 49 undefined on input line 5 91. (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [49]) (./_minted-Tutorial/A1A806B513EE80294615F1F6C56CA22F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F0C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `sec:fasta-parsing' on page 50 undefined on input line 665. (./_minted-Tutorial/1075DB6AF9E4A3F207521105E503858714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB814FA033DCB1376922271CBD58A8 A4A36.pygtex [50]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E830C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/53F70E2F1CBA6BCBDCE4071375628CF767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [51] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:fastq-indexing' on page 52 undefined on input lin e 786. (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seqio-todict-functionkey' on page 52 undefined on input line 807. (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [52]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 851--856 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-sort' on page 53 undefined on input line 86 9. Overfull \hbox (4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [53]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 54 undefined on input line 951. (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [54] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [55] (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD734214FA033DCB1376922271CBD58A8 A4A36.pygtex [56]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C60C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D40C640781732628151051B15D85C 9070A.pygtex [57]) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 58 undefined on input line 1192. (./_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-fastq-conversion' on page 58 undefined on i nput line 1236. LaTeX Warning: Reference `sec:SeqIO-fasta-qual-conversion' on page 58 undefined on input line 1236. [58] LaTeX Warning: Reference `sec:seq-reverse-complement' on page 59 undefined on i nput line 1251. (./_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 59 undefine d on input line 1261. (./_minted-Tutorial/218C0A230BCAE3B7E030880B471BA86367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 59 undefined on input li ne 1303. (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex [59]) LaTeX Warning: Reference `sec:SeqRecord-format' on page 60 undefined on input l ine 1323. (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1341--1343 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [60] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:cookbook' on page 61 undefined on input line 1404. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [61] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 62 undefined on input l ine 31. LaTeX Warning: Reference `sec:AlignIO-count-argument' on page 62 undefined on i nput line 35. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF420C640781732628151051B15D85C 9070A.pygtex [62]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [63]) LaTeX Warning: Reference `sec:alignment-format' on page 64 undefined on input l ine 113. (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A3107767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F20C640781732628151051B15D85C 9070A.pygtex) [64] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C56040767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD3310C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B445330C640781732628151051B15D85C 9070A.pygtex [65]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF75667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE0C640781732628151051B15D85C 9070A.pygtex) [66] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF0200C640781732628151051B15D85C 9070A.pygtex [67]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C50C640781732628151051B15D85C 9070A.pygtex) [68] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D31867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A237144770C640781732628151051B15D85C 9070A.pygtex [69]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 434--435 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 70 undefined on input l ine 444. Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [70]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [71]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [72]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 73 undefined on input l ine 633. (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [73] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [74]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [75]) LaTeX Warning: Reference `sec:SeqRecord-addition' on page 76 undefined on input line 813. (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [76] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:subs_mat_ex' on page 77 undefined on input line 8 92. (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:pairwise' on page 77 undefined on input line 915. [77] LaTeX Warning: Reference `chapter:seqio' on page 78 undefined on input line 919 . (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:emboss-needle-water' on page 78 undefined on inpu t line 949. (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [78]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [79]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:phylo' on page 80 undefined on input line 109 5. (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [80]) (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [82] (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:appendix-handles' on page 83 undefined on input l ine 1316. (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [84]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [85] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [87]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `durbin1998' on page 88 undefined on input line 1688. Overfull \hbox (0.78606pt too wide) in paragraph at lines 1686--1689 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:pairwise-aligner' on page 88 undefined on input l ine 1701. (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `waterman1987' on page 89 undefined on input line 1774. (./_minted-Tutorial/E5E00F47BD7A0C8BC5F881852628386867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [89]) LaTeX Warning: Reference `sec:pairwise-substitution-scores' on page 90 undefine d on input line 1804. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 90 undefined o n input line 1804. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 90 undefined on input line 1804. LaTeX Warning: Reference `sec:pairwise-basic' on page 90 undefined on input lin e 1805. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 90 undefined o n input line 1808. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 90 undefined on input line 1809. (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `altschul1990' on page 90 undefined on input line 1835. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 90 undefined o n input line 1835. (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [90]) (./_minted-Tutorial/F08297D25DBB0EC458EEDF5510780E9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `altschul1990' on page 91 undefined on input line 1864. (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: Reference `table:align-meta-attributes' on page 92 undefined on input line 1968. Overfull \hbox (32.852pt too wide) in paragraph at lines 1972--2016 [][] [92] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:pairwise-examples' on page 93 undefined on input line 2058. (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93] [94]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C96493DCAF9B522114CF4E5E2ED59EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [96] (./_minted-Tutorial/385490B66B3AC742DD6257196C784FE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BF27E9BF2471340998870C4A3429659267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5F255D6E493419E5F523F2A975278067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C5780017603AFBC3BB3E9F52ED6688C514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E2D8402A42C488B43E823D056683EE7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C93EE09C24214EFB103597E967BC093E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD99642E498E0D36D353C8D0E91819C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/147547C6C0B329E642CE7584B58DDCED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0F1FEB8757C2ABBEFF5A5933C033854A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C2A81981348FC122290D4BF339EF28067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) (./_minted-Tutorial/0D2A1E880F29600B639B45481855F3CF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1B1BD63B0E1791A94C1591A879316E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E0CC5559A1B54F1DFFC0C95E9F657BC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C3A68CFDB89C0C63A10B21CD7364FEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [99] (./_minted-Tutorial/6A00D4BA65DCCBE19BE0A5C25F13423067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C81CE609C3C74FF6DDE53A3528FDA3A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [100] (./_minted-Tutorial/7808362E1897955C4D84B6A5C725B37067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/082EF6E387B649F7F6B9332ECA3C14FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8E736723204677A93FE4D75F2EB836567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E1F81118C07022DC3AE1F5936BE043AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D2FD508C41C176AD7A00FFAD0280C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `kent2002' on page 101 undefined on input line 2486. (./_minted-Tutorial/3363B2217CB2D6762D6F05CF96CEB6EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [101] (./_minted-Tutorial/6AFB7518828CB5CE2786BB1F05FA196667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2CB6704BA931CF6F3C30DE5475D088D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/F4D1EFD0A75F8F251D61853DB5B12A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94D69571A69F80E3CCD32B0AFD10CBB467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E624B311569CC6FAA91D2E8671D827FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [103]) (./_minted-Tutorial/7442AA52B0FC887EC2AAC73A4E59FFFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA7767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [104]) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF79660067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 2671--2672 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [105] (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `schneider2005' on page 106 undefined on input line 276 3. LaTeX Warning: Reference `sec:substitution_matrices' on page 106 undefined on i nput line 2763. (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/819EB88A2CBCC7948E4BEBE7FB9F80EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22DC4F8C7ADBE16392AA93A6EF2819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/171A69BE62E368AD65396E23A20B1DEE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1C712272F319372A1AB78DEB403D23367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [107]) (./_minted-Tutorial/C7C0911CDDC1913791B1BD1EDA0EC55F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F13283947C7FDCA9456A70797E029A7367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [108]) (./_minted-Tutorial/F31773576B5C3B14C8BCFC3D71E2671467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [109]) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E656D3A6BB3675CEC995C2C398DA729367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31A4214F0316300852C263796C130BE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [110]) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AB42E81B0039139237BF82BA22516C8B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F45B7CF5E8DCF44722DA12A77C5BD96967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/256D8F4D1BB7E6301923B808B6EEB34567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7AFBDEDDA8F411FC4281444B70E6021E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [111]) (./_minted-Tutorial/6B4057929CCF1526CF34FF943CFE313567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9730D42326723F9A4A3771D68D644E7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E3A6838E914945B67D684750F42B90B267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [112]) (./_minted-Tutorial/A117079E905A3317941FA3CB9457C22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA82527867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55D34AF6272FC77B12E7D4DD16884A6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A5A764AD6E5C1A70216D27249F68009367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [113]) (./_minted-Tutorial/54EF0A3F068FF357EC3C51C6E1172A5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/54D7EA4835796C5C4162263077D6191C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CEB2F5A09DE2611D752331C16E5BE61F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D8624166470767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B50C640781732628151051B15D85C 9070A.pygtex [114]) (./_minted-Tutorial/BCCC189D6984A3CAE23757DF96064B4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DFB937A17182FF8FB5EABF3F70A58B0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `altschul1990' on page 115 undefined on input line 3319 . (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D0C640781732628151051B15D85C 9070A.pygtex [115]) (./_minted-Tutorial/4DC21B98C2C48E89E7C16C6BAB13C5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9ED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A29DE03FF59071EADD7632CC7B11243E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [116]) LaTeX Warning: Citation `henikoff1992' on page 117 undefined on input line 3391 . LaTeX Warning: Citation `dayhoff1978' on page 117 undefined on input line 3391. (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D9F7C1083DA643BDA1083E79D82EF2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `schneider2005' on page 117 undefined on input line 341 5. (./_minted-Tutorial/20711981BAB695B8006B7A92E4859CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [117] (./Tutorial/chapter_blast.tex Chapter 7. LaTeX Warning: Reference `chapter:searchio' on page 118 undefined on input line 18. [118] LaTeX Warning: Reference `sec:parsing-blast' on page 119 undefined on input lin e 58. (./_minted-Tutorial/04BEBF413314D7A51FC0F91D3066CE4F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 119 undefined on input line 11 9. LaTeX Warning: Reference `sec:parsing-blast' on page 119 undefined on input lin e 124. (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [119]) LaTeX Warning: Reference `sec:parsing-blast' on page 120 undefined on input lin e 146. (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:parsing-blast' on page 120 undefined on input lin e 155. LaTeX Warning: Reference `sec:running-www-blast' on page 120 undefined on input line 164. LaTeX Warning: Reference `sec:alignment-tools' on page 120 undefined on input l ine 192. (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B402706802BF02F25F9B09CDB22A3FEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [120]) LaTeX Warning: Reference `sec:parsing-blast' on page 121 undefined on input lin e 236. LaTeX Warning: Reference `sec:running-www-blast' on page 121 undefined on input line 286. LaTeX Warning: Reference `sec:running-local-blast' on page 121 undefined on inp ut line 288. [121] LaTeX Warning: Reference `sec:appendix-handles' on page 122 undefined on input line 303. (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE521800467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 122 undefined on input line 33 9. LaTeX Warning: Reference `chapter:align' on page 122 undefined on input line 33 9. (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F4039467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDFE599DAB8ED6AC4F17D4FC6F0230BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [122]) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D23867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F90D3141F79DD2447A9059C65E1C6B4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B19240C640781732628151051B15D85C 9070A.pygtex [123]) LaTeX Warning: Reference `fig:blastrecord' on page 124 undefined on input line 449. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:psiblastrecord' on page 124 undefined on input li ne 465. Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [128]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [131] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [132]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [134] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 137 undefined on input lin e 734. Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 141 undefined on input line 1082. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [141]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [142] [143] (./Tutorial/chapter_entrez.tex Chapter 9. [144] LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 145 undefined on input line 21. (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [145] LaTeX Warning: Reference `sec:entrez-webenv' on page 146 undefined on input lin e 60. LaTeX Warning: Reference `sec:BioSQL' on page 146 undefined on input line 63. (./_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [146]) (./_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [147]) (./_minted-Tutorial/1FE33E4DDF6E596EA7687FB6F017F09967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C6867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:efetch' on page 148 undefined on input line 216. LaTeX Warning: Reference `sec:entrez-einfo' on page 148 undefined on input line 220. (./_minted-Tutorial/A4BD3C61B53064F601B4477CDD3106A667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:efetch' on page 148 undefined on input line 234. (./_minted-Tutorial/3B6409EA2F4B25B8F136CE97DC95E8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/36931D2CFB3ECF0D53B3D7376832300467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/ED23259F6CF56D8483B68EF02BB7325067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 149 undefined on input lin e 297. [149] (./_minted-Tutorial/96245EB54DC7A4475CD270566892BAE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 150 undefined on in put line 323. LaTeX Warning: Reference `sec:efetch' on page 150 undefined on input line 323. (./_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [150] [151]) LaTeX Warning: Reference `chapter:seqio' on page 152 undefined on input line 41 7. (./_minted-Tutorial/042DA7A7135DAEF797FB2EE6170C3B6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/11417087354B0B78128E27B0162F48D514FA033DCB1376922271CBD58A8 A4A36.pygtex [152]) (./_minted-Tutorial/51CC2C09DB95235CA19612EAFF65F48767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 153 undefined on input line 479. LaTeX Warning: Reference `sec:entrez-webenv' on page 153 undefined on input lin e 481. (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [153]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5AB8B67C801B8858B19590FE5D018BA367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:elink-citations' on page 154 undefined on input l ine 562. LaTeX Warning: Reference `sec:entrez_example_genbank' on page 154 undefined on input line 568. (./_minted-Tutorial/7455566FBE10CCFD5236DF65992A9F7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [154]) (./_minted-Tutorial/6E7EC19AB4E894FD7BECB47DC082FC3867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E096EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/0290A0C926605EF68EF2EEEAEB078A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [155]) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF380C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/DDE0AA7C839DD601590297B5D523D03B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB860C640781732628151051B15D85C 9070A.pygtex) [156] (./_minted-Tutorial/BE0AC194CA3417BFC49309A9791ED35B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8BFD5A5D2A0A2DB21DA15E3F1719D3F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B0C640781732628151051B15D85C 9070A.pygtex [157]) (./_minted-Tutorial/06D29A54CBCE7E9BEC9B02AF3737953F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/115C0D8716DAB358EAFF936486F27AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 158 undefined on in put line 777. LaTeX Warning: Reference `sec:efetch' on page 158 undefined on input line 777. [158] (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/97FFA15DF713393C0351F9F947AC446667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34883991B974FF1C1BE2D18B230693C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/41118C19A2E462F9721E8AB1E52AAFC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [159]) (./_minted-Tutorial/8D1D071E3CA3DD9187A6F2C35836C58A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E297F3C90950B761CCB974F597BCC1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/079D37C5A2B3943F37FA4CC9C5C43BC767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5056BF2116652C732E1D8E3CDA11D6AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 160 undefined on input lin e 897. [160] (./_minted-Tutorial/4997CC17B3360B104654D2ED20FA8B4067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/473B4163A14D626D6B7A08A26A0A126667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F20190C640781732628151051B15D85C 9070A.pygtex [161]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B62467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C337E8D92F5A543D90F4D2C8BCBF18367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [162]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA114FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:orchids' on page 163 undefined on input line 1065 . (./_minted-Tutorial/B875C8F385654DD9607A0DAA82B3371067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D46819E08D3CDD954897218A7EB7C8C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [163]) (./_minted-Tutorial/F62235DAC4152853E8C6EBBD7E2D286167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 164 undefined on input lin e 1108. (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:orchids' on page 164 undefined on input line 1154 . [164] (./_minted-Tutorial/491F8A9C8CFC3BB4763B296852A6D1D567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7725E37E412C564C008C3BCECB547CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B64203867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 165 undefined on input lin e 1206. (./_minted-Tutorial/8905908F46BA67CB99A3360F253875C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [165]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 166 undefined on input lin e 1241. LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 166 undefined on in put line 1248. LaTeX Warning: Reference `sec:entrez-webenv' on page 166 undefined on input lin e 1249. (./_minted-Tutorial/D8F151290BCF14625BA5E4CD26A7FB1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [166]) (./_minted-Tutorial/824F6600A92AA40841D5D9A4C2EDC5FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3EC6E0F9D852E0B8DED607938A7279767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E8FC03C2B925F09D2849BD1DDCBB384867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 167 undefined on input line 13 01. (./_minted-Tutorial/A137A30778671FFE0F193EED7A8819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4EDDF5C23B0FCCC279960365B499A16C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [167]) LaTeX Warning: Reference `sec:entrez-guidelines' on page 168 undefined on input line 1325. LaTeX Warning: Reference `sec:entrez-webenv' on page 168 undefined on input lin e 1326. (./_minted-Tutorial/D49E38D9D1357F6225DB42AC5AD5ED7E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC6CFA7B6751FFF8C74660FCC40D3C4567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB9364967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [168] LaTeX Warning: Reference `sec:entrez-search-fetch-genbank' on page 169 undefine d on input line 1386. (./_minted-Tutorial/FE862EFCF9F786EA3C4D97E3821A5CAA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez_example_genbank' on page 169 undefined on input line 1407. (./_minted-Tutorial/7212F8F4D805E6009D8612AB61498E2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B038E9BC100BB2A231E2B4BF11B0330C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F963367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E93113A22D275DCF1ED22A91F77D57414FA033DCB1376922271CBD58A8 A4A36.pygtex [169]) (./_minted-Tutorial/4F9D9C998FB1DECE2FBF932B39921FFA14FA033DCB1376922271CBD58A8 A4A36.pygtex [170]) LaTeX Warning: Reference `sec:entrez-and-medline' on page 171 undefined on inpu t line 1496. LaTeX Warning: Reference `sec:elink' on page 171 undefined on input line 1501. (./_minted-Tutorial/826A4111F6CE74D7A673B6C8F5681FC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 171 undefined on input lin e 1525. (./_minted-Tutorial/F52B50369F8EBC15506CCA30EE3F873367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [171] (./Tutorial/chapter_uniprot.tex Chapter 10. LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 172 undefined on input line 12. (./_minted-Tutorial/DC3FD651AB93A0CE9D668FE4206D1A8667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A66867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD676867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:expasy_swissprot' on page 172 undefined on input line 37. (./_minted-Tutorial/930B60BD569CAAF368B0E614553F303067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 172 undefined on input line 45. [172] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA651918267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68D834E8AB9E722FD7953C65DB7E9FDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD6922867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D1467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [173]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A451791867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF256282240C640781732628151051B15D85C 9070A.pygtex [174]) (./_minted-Tutorial/3876A0F1CD2CBCD824C73B244059EE4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [175]) (./_minted-Tutorial/7A92C6B39F0BC9AE063090BDDCD011DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B0C640781732628151051B15D85C 9070A.pygtex [176]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC78367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [177] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:orchids' on page 178 undefined on input line 343. (./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [178]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [179]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [180]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [181] (./Tutorial/chapter_pdb.tex Chapter 11. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C2285367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E6908567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [182]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA738867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB3567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36B58FEFA589A67048E7D5B63D489DAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB823167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:problem_structures' on page 183 undefined on inpu t line 85. (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [183] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E1867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A02467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [184]) (./_minted-Tutorial/05F3B09A7CBE08B1C91DE55284F12C2867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [185] Overfull \hbox (13.022pt too wide) in paragraph at lines 263--265 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) LaTeX Warning: Reference `fig:smcra' on page 186 undefined on input line 276. LaTeX Warning: Reference `sec:problem_structures' on page 186 undefined on inpu t line 285. Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D97967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [186] [187 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD85567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB24767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E272762267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [188] LaTeX Warning: Reference `sec:hetero_problems' on page 189 undefined on input l ine 422. (./_minted-Tutorial/2F13678C6026DEBF0D98D4214CDF499867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:point_mutations' on page 189 undefined on input l ine 467. (./_minted-Tutorial/DE3953D86837855582C4B8B9F38D7FD667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:disordered_atoms' on page 189 undefined on input line 484. [189] (./_minted-Tutorial/D15D1F955440960DB3C5206BF3EEE29E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/652F2E49D1B3634A04F3CB950B38570467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [190]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC8809867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB1249267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:smcra' on page 191 undefined on input line 611. (./_minted-Tutorial/84495A3B19FA62DBFC292B309E5DE1E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [191]) LaTeX Warning: Reference `fig:smcra' on page 192 undefined on input line 658. (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [192] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB9067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B12867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [193]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF23189967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87466E9C05D4662C6164A2AFA3A69C4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC266367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA3967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [194]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E66767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/200193443B83EEADE7971FACFD86F16D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A49EF93DADD431750435FD5125A74A0567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [195]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D51872E4871C96F9D4DDBFAF9C4DF2EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [196] Overfull \hbox (42.26714pt too wide) in paragraph at lines 953--957 \OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity) LaTeX Warning: Reference `table:ic-attribs' on page 197 undefined on input line 970. Overfull \hbox (3.8904pt too wide) in paragraph at lines 973--993 [][] LaTeX Warning: Citation `golub1989' on page 197 undefined on input line 1015. (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [197]) LaTeX Warning: Citation `hamelryck2005' on page 198 undefined on input line 104 3. LaTeX Warning: Command \r invalid in math mode on input line 1046. (./_minted-Tutorial/0F60C02FB1C0A5EBADB8EF693216594667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `table:DSSP-codes' on page 198 undefined on input line 1078. LaTeX Warning: Reference `sec:residue_depth' on page 198 undefined on input lin e 1118. [198] (./_minted-Tutorial/163F04F633C696E8F41EBFFBB74DAF9D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84DC73903FA70E943C63131089E2ED9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `hamelryck2003a' on page 199 undefined on input line 11 69. [199] [200] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [201] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [202] LaTeX Warning: Citation `hamelryck2003b' on page 203 undefined on input line 13 80. LaTeX Warning: Citation `majumdar2005' on page 203 undefined on input line 1381 . ) [203] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [204])) [205] (./Tutorial/chapter_phylo.tex Chapter 13. LaTeX Warning: Citation `talevich2012' on page 206 undefined on input line 9. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [206]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:phylo-simple-draw' on page 207 undefined on input line 96. (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [207] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:phylo-color-draw' on page 208 undefined on input line 192. (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [208 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/6382EC6908438B3E67C757E70A11466C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [209 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/6D2EF2116C7B06D5B8D357EA567F832E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A145A6C1AAD034F2FF71DE52310A2BD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/787FD2B6485DC30362A59A325340738367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F5567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [210]) (./_minted-Tutorial/9DD9A1F0A4FFCEEE15CCB35AFAE0B5FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7692F6F4FEC56E165A881DE3F8A965167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. [211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [213] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [214] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- LaTeX Warning: Reference `sec:alignment-tools' on page 215 undefined on input l ine 715. [215] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [216] LaTeX Warning: Reference `sec:PhyloXML' on page 217 undefined on input line 786 . ) [217] (./Tutorial/chapter_motifs.tex Chapter 14. LaTeX Warning: Reference `sec:links' on page 218 undefined on input line 8. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F155F8EF3B63ECD9B6708A42B8F5F72A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [218]) (./_minted-Tutorial/CEBDE9089C5A4F125D8DD8D4E6ACD9C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F3B74C4B4D1FF3D387E6F57F726D17767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0517D975CF92331B81AF837F9D25717367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C66E35936EA68A132264FDF63F70A42A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/666DFB2D351C7C4DE86ECB38CCBB491867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [219]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F6124319202267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `cornish1985' on page 220 undefined on input line 164. LaTeX Warning: Citation `cavener1987' on page 220 undefined on input line 165. (./_minted-Tutorial/02A6CF1EA94D619AE2B9428BDA4531C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB247667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [220] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA0C640781732628151051B15D85C 9070A.pygtex [221]) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD1D7AEBB145784C9665DAA472D55CE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [222]) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E778DA34B5EC9B33527CC22435275C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF920C640781732628151051B15D85C 9070A.pygtex [223]) (./_minted-Tutorial/B5E175DBFE536E62D3BB466A47FD029F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [224]) (./_minted-Tutorial/7F5E0E05D69E7F9EC30F2A5CD5D9B5F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [225]) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/696A69FC8317D40C8605CBADFDA5D87767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [226] (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6382581C9B01D86887B13EFD1FA7AFA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C37867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C1EF8469C0F4B427273EE106072F9E6667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [227]) LaTeX Warning: Citation `bailey1994' on page 228 undefined on input line 541. (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E440C640781732628151051B15D85C 9070A.pygtex [228]) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 602--605 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B8467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [229]) (./_minted-Tutorial/CB1A766DCCC9D440884673396E01205367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `matys2003' on page 230 undefined on input line 687. (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA70C640781732628151051B15D85C 9070A.pygtex [230]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C09EEE739CAD078852B77A784E1269267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `table:transfaccodes' on page 231 undefined on input l ine 771. LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [231] [232]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F2640667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B5EBBADDB3E7B53C5C4AED82E42FFC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0B25C484239457B0395121E60BF5149567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8B39433E243DA74D8945D4CCEE7060567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [233]) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [234]) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3F030F5FA6A7817CFA605062601C81267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [235]) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F2A64376DB87D5A7AB48BFE3760B0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [236]) (./_minted-Tutorial/22387CA0FB9349FBC21B30A09B80342067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A4D3A313CCE21054A332F39A60F4F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC6389F07C07315B68A4843F8EC4A8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA16167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [237] (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E2567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A509267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C8607367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE97067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [238]) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [239]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E32267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD726160367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA247367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [240]) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [241] (./_minted-Tutorial/63EC9F933A4699B71D633AB9C35237C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5032B21DEC5EBE299D472B0AF220432A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F44720C640781732628151051B15D85C 9070A.pygtex) [242] (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/852A3852541269829CE5DF380357F2CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AC8B7A8ADEC6FEB0B1260E665CF238B667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [243]) [244] (./Tutorial/chapter_cluster.tex Chapter 15. LaTeX Warning: Citation `dehoon2004' on page 245 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 245 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 245 undefined on input line 30. [245] [246] [247] LaTeX Warning: Citation `snedecor1989' on page 248 undefined on input line 154. [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 249 undefined on input line 183. (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [249]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [250] LaTeX Warning: Reference `sec:distancefunctions' on page 251 undefined on input line 277. [251] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [252] LaTeX Warning: Reference `sec:distancefunctions' on page 253 undefined on input line 345. (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [253] [254] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [255] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [256] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 257 undefined on input line 555. (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [257]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Citation `kohonen1997' on page 258 undefined on input line 599. LaTeX Warning: Citation `tamayo1999' on page 258 undefined on input line 599. [258] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C17567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 259 undefined on input line 646. [259] Overfull \hbox (106.77225pt too wide) in paragraph at lines 653--655 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ LaTeX Warning: Citation `yeung2001' on page 260 undefined on input line 659. LaTeX Warning: Citation `golub1971' on page 260 undefined on input line 667. (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [260] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A7DB1B14B8C3B59B03D102D4BEECDD167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D220C09E8614EBE54BD07A8C18AAC3367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [261] Overfull \hbox (25.39864pt too wide) in paragraph at lines 737--748 [] [262] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 263 undefined on input line 800. LaTeX Warning: Reference `sec:distancematrix' on page 263 undefined on input li ne 803. (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:clustercentroids' on page 263 undefined on input line 821. (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [263] LaTeX Warning: Reference `sec:distancefunctions' on page 264 undefined on input line 844. (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 264 undefined on input line 869. (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [264] LaTeX Warning: Reference `sec:distancefunctions' on page 265 undefined on input line 898. (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA850467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 265 undefined on input line 920. [265] Overfull \hbox (106.77225pt too wide) in paragraph at lines 927--929 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `hihara2001' on page 266 undefined on input line 952. (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [266]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 984--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [267] (./Tutorial/chapter_learning.tex Chapter 16. [268] LaTeX Warning: Reference `eq:OP' on page 269 undefined on input line 40. LaTeX Warning: Reference `eq:NOP' on page 269 undefined on input line 40. LaTeX Warning: Reference `table:training' on page 269 undefined on input line 7 5. (./_minted-Tutorial/8C8664D7942C9DDA1DE175A432DAD57267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [269]) (./_minted-Tutorial/390D9013E6AF7385E3C5A71EC44014AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D87A6F5674B92E17575B5F1479772CA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [270]) [271] (./_minted-Tutorial/183EBB0903E699FF7289E5FDA71CB09667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `eq:OP' on page 272 undefined on input line 212. LaTeX Warning: Reference `eq:NOP' on page 272 undefined on input line 212. (./_minted-Tutorial/7E494FD25838EE4C9E476EBA48BDF0CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B53BAB1CC7569CE8ADFECF2CFC02D40267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94C0A9A9293B19D950018F966B967E8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [272]) (./_minted-Tutorial/A1B56761C52CC91D59E84159B69EC85E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `eq:OP' on page 273 undefined on input line 274. LaTeX Warning: Reference `eq:NOP' on page 273 undefined on input line 274. LaTeX Warning: Reference `eq:OP' on page 273 undefined on input line 276. LaTeX Warning: Reference `eq:NOP' on page 273 undefined on input line 276. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 280. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 280. [273] LaTeX Warning: Reference `sec:LogisticRegression' on page 274 undefined on inpu t line 286. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 288. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 288. LaTeX Warning: Reference `table:training' on page 274 undefined on input line 2 90. (./_minted-Tutorial/AE2B91C0366D79644B870EB1EB9436E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:LogisticRegressionTraining' on page 274 undefined on input line 298. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 300. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 300. (./_minted-Tutorial/B35CDBE12860937BD1F854583E7BA59567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FF01A8BA64DD59AF7C1265FFBD6C1B5267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/27D68FCC443982B3438F0C03A4D541D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [274]) (./_minted-Tutorial/AEF267C3082CB68394DCEE656CEB2FC167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A38355D92EE3DC8D96655428C0CEDC1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/10829292EF1E211AEAC19B179A46CD1067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7F43A5B55F7492DFDBA4E17BF7F34F4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [275])) [276] (./Tutorial/chapter_graphics.tex Chapter 17. LaTeX Warning: Citation `pritchard2006' on page 277 undefined on input line 18. LaTeX Warning: Citation `toth2006' on page 277 undefined on input line 28. LaTeX Warning: Citation `vanderauwera2009' on page 277 undefined on input line 31. LaTeX Warning: Reference `chapter:seq_annot' on page 277 undefined on input lin e 36. LaTeX Warning: Reference `chapter:seqio' on page 277 undefined on input line 36 . [277] LaTeX Warning: Reference `chapter:seqio' on page 278 undefined on input line 64 . (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D81614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B03514FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_linear' on page 278 undefined on input li ne 136. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA714FA033DCB1376922271CBD58A8 A4A36.pygtex [278]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_circular' on page 279 undefined on input line 167. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E14FA033DCB1376922271CBD58A8 A4A36.pygtex [279 <./images/plasmid_linear.png (PNG copy)>]) LaTeX Warning: Reference `sec:seq_features' on page 280 undefined on input line 220. [280 <./images/plasmid_circular.png (PNG copy)>] (./_minted-Tutorial/5D58687CD77437A3DD50DABD32F1536714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0EA68B85D005018D196EB15C866B9F3814FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_labels' on page 281 undefined on input l ine 260. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D85014FA033DCB1376922271CBD58A8 A4A36.pygtex [281]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_labels' on page 282 undefined on input l ine 330. LaTeX Warning: Reference `sec:gd_features_without_seqfeatures' on page 282 unde fined on input line 339. LaTeX Warning: Reference `sec:gd_feature_captions' on page 282 undefined on inp ut line 339. LaTeX Warning: Reference `sec:gd_features_without_seqfeatures' on page 282 unde fined on input line 339. LaTeX Warning: Reference `sec:gd_feature_captions' on page 282 undefined on inp ut line 339. LaTeX Warning: Reference `sec:gd_nice_example' on page 282 undefined on input l ine 345. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B9414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C14FA033DCB1376922271CBD58A8 A4A36.pygtex [282] [283 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigils' on page 284 undefined on input line 38 7. Excluding 'htmlonly' comment. LaTeX Warning: Reference `sec:gd_sigils' on page 284 undefined on input line 40 3. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_arrow_shafts' on page 284 undefined on i nput line 434. LaTeX Warning: Reference `sec:gd_arrow_sigils' on page 284 undefined on input l ine 439. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_arrow_heads' on page 284 undefined on in put line 463. LaTeX Warning: Reference `sec:gd_arrow_sigils' on page 284 undefined on input l ine 468. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:gd_top_down' on page 284 undefined on input line 488. (./_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8 A4A36.pygtex [284] [285 <./images/GD_sigils.png>] [286 <./images/GD_sigil_arrow _shafts.png>] [287 <./images/GD_sigil_arrow_heads.png>] [288]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_linear_nice' on page 289 undefined on inp ut line 570. LaTeX Warning: Reference `fig:plasmid_circular_nice' on page 289 undefined on i nput line 571. LaTeX Warning: Reference `sec:gd_nice_example' on page 289 undefined on input l ine 577. LaTeX Warning: Reference `sec:gd_nice_example' on page 289 undefined on input l ine 577. LaTeX Warning: Reference `sec:gd_nice_example' on page 289 undefined on input l ine 585. LaTeX Warning: Reference `sec:gd_nice_example' on page 289 undefined on input l ine 585. LaTeX Warning: Citation `proux2002' on page 289 undefined on input line 596. LaTeX Warning: Reference `sec:efetch' on page 289 undefined on input line 605. LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 289 undefined on input line 608. LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 289 undefin ed on input line 610. [289 <./images/plasmid_linear_nice.png (PNG copy)>] [290 <./images/plasmid_circ ular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [291]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [292]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_simple' on page 293 undefined on inpu t line 732. LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 293 undefined on inpu t line 739. LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 293 undefined on inpu t line 739. LaTeX Warning: Citation `proux2002' on page 293 undefined on input line 759. (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex [293 <./images/three_track_simple.png>]) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex [294]) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 295 undefined on input li ne 894. LaTeX Warning: Reference `sec:gd_cross_links' on page 295 undefined on input li ne 901. LaTeX Warning: Reference `sec:gd_cross_links' on page 295 undefined on input li ne 901. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl2' on page 295 undefined on input l ine 927. LaTeX Warning: Reference `sec:gd_cross_links' on page 295 undefined on input li ne 934. LaTeX Warning: Reference `sec:gd_cross_links' on page 295 undefined on input li ne 934. [295] [296 <./images/three_track_cl.png>] [297 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Citation `jupe2012' on page 298 undefined on input line 1012. (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex [298] [299 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [300]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:simplechromosome' on page 301 undefined on input line 1114. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8 A4A36.pygtex [301]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:simplechromosome' on page 302 undefined on input line 1194. ) [302] (./Tutorial/chapter_kegg.tex Chapter 18. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [303] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B14FA033DCB1376922271CBD58A8 A4A36.pygtex [304]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C950C640781732628151051B15D85C 9070A.pygtex)) [305] (./Tutorial/chapter_phenotype.tex Chapter 19. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [306] (./_minted-Tutorial/F7E0F1384D5EE10CDFEDB2428F50CCC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB08167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6CD5F177651EF61E679B9FAF6C25BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [307]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D720667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [308]) (./_minted-Tutorial/EE7361AC934053D42AE642DBF97DE34A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [309]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [310] (./Tutorial/chapter_cookbook.tex Chapter 20. LaTeX Warning: Reference `chapter:seqio' on page 311 undefined on input line 22 . (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB14FA033DCB1376922271CBD58A8 A4A36.pygtex [311]) LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 312 undefined on i nput line 58. (./_minted-Tutorial/FF8B764D5420CEF9ECE1CDD6385A3BDC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E5716467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [312] (./_minted-Tutorial/D24532DF36691735DACEF9DD7062845467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 313 undefined on input line 146. (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/54D3F8BEB8094C8ADFFB26585CE1463814FA033DCB1376922271CBD58A8 A4A36.pygtex [313]) LaTeX Warning: Reference `sec:translation' on page 314 undefined on input line 199. LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 314 undefined o n input line 204. (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F6414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A023964706114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B14FA033DCB1376922271CBD58A8 A4A36.pygtex) [314] (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC6554114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE40879314FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 315 undefined on inpu t line 336. (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D914FA033DCB1376922271CBD58A8 A4A36.pygtex [315]) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA214FA033DCB1376922271CBD58A8 A4A36.pygtex) [316] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF64183114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F3545014FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 317 undefined on i nput line 441. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 317 undefined on i nput line 455. Overfull \hbox (5.83499pt too wide) in paragraph at lines 452--456 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 317 undefined on input line 478. [317] (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA55614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A14FA033DCB1376922271CBD58A8 A4A36.pygtex [318]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F891514FA033DCB1376922271CBD58A8 A4A36.pygtex [319]) LaTeX Warning: Reference `sec:SeqIO-conversion' on page 320 undefined on input line 641. LaTeX Warning: Citation `cock2010' on page 320 undefined on input line 644. [320] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8 A4A36.pygtex [321]) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 322 undefined on input line 800. (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [322] LaTeX Warning: Reference `sec:SeqIO-index' on page 323 undefined on input line 822. LaTeX Warning: Reference `sec:SeqIO-sort' on page 323 undefined on input line 8 24. LaTeX Warning: Reference `sec:SeqIO-conversion' on page 323 undefined on input line 838. (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/41250203CD471B54840A6F5E1188318D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [323] LaTeX Warning: Reference `sec:translation' on page 324 undefined on input line 905. (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BAE95C3681F5665B01248E86DAC866B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE9671DEE2B114F544A5881F074C33B214FA033DCB1376922271CBD58A8 A4A36.pygtex [324]) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A630520C640781732628151051B15D85C 9070A.pygtex [325]) LaTeX Warning: Reference `sec:gd_nice_example' on page 326 undefined on input l ine 1021. LaTeX Warning: Reference `chapter:seqio' on page 326 undefined on input line 10 38. (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B714FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-len-hist' on page 326 undefined on input line 1106. [326] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [327 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-gc-plot' on page 328 undefined on input line 1172. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 328 undefined on input line 1186. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [328 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E81665614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [329 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 330 undefined on input line 1264. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [330]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:nuc-dot-plot-scatter' on page 331 undefined on in put line 1340. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [331 <./images/dot_plot_scatter.png>]) LaTeX Warning: Reference `fig:paired-end-qual-plot' on page 332 undefined on in put line 1401. Excluding 'htmlonly' comment. LaTeX Warning: Reference `chapter:align' on page 332 undefined on input line 14 13. [332 <./images/SRR001666.png>] LaTeX Warning: Reference `chapter:align' on page 333 undefined on input line 14 20. (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:consensus' on page 333 undefined on input line 14 31. LaTeX Warning: Reference `sec:pssm' on page 333 undefined on input line 1432. LaTeX Warning: Reference `sec:getting_info_content' on page 333 undefined on in put line 1433. LaTeX Warning: Reference `sec:sub_matrix' on page 333 undefined on input line 1 434. LaTeX Warning: Reference `sec:summary_info' on page 333 undefined on input line 1440. (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [334] LaTeX Warning: Reference `sec:summary_info' on page 335 undefined on input line 1560. (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB53006514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A4014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D04314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7C14FA033DCB1376922271CBD58A8 A4A36.pygtex [335]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C97367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:align_clustal' on page 336 undefined on input lin e 1635. (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [336]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5740381D1C5E453AC66BA80B4940791567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/000D4DEB94FD9E29F9808AD61CE02B1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 338 undefined on input line 17 41. ) [338] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `sec:doctest' on page 339 undefined on input line 55. (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [339] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [340]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [341] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [342]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `sec:doctest' on page 343 undefined on input line 282. (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [343]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [344] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [345] (./Tutorial/chapter_advanced.tex Chapter 22. LaTeX Warning: Reference `sec:substitution_matrices' on page 346 undefined on i nput line 36. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [346] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [347] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:freq_table' on page 348 undefined on input line 1 62. (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [348]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [349] (./Tutorial/chapter_contributing.tex Chapter 23. LaTeX Warning: Reference `chapter:cookbook' on page 350 undefined on input line 32. [350] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `chapter:testing' on page 351 undefined on input line 85. LaTeX Warning: Reference `chapter:testing' on page 351 undefined on input line 101. [351]) [352] (./Tutorial/chapter_appendix.tex Chapter 24. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A46285914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B4214FA033DCB1376922271CBD58A8 A4A36.pygtex [353]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C4214FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:SeqIO_compressed' on page 354 undefined on input line 91. (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A20367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [354] [355] [356] [357] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1000 mkdir: cannot create directory ‘././sbuild-nonexistent’: Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1000 This is METAFONT, Version 2.71828182 (TeX Live 2022/dev/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1000.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06943pt) Font metrics written on tcrm1000.tfm. Output written on tcrm1000.600gf (128 characters, 23548 bytes). Transcript written on tcrm1000.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm1000.600pk: successfully generated. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Tutorial.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (358 pages, 2464772 bytes). Transcript written on Tutorial.log. pdflatex --shell-escape "\def\bpversion{1.79}\input{Tutorial}" This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))/usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux LaTeX Warning: Label `sec:pairwise-general-gapscores' multiply defined. ) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./Tutorial.out) (./Tutorial.out) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{29}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default-pyg-prefix.pygstyle) (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [11 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [12]) [13] (./Tutorial/chapter_quick_start.tex Chapter 2. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [14]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [15] (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B021334678185567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [16]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [17]) [18] (./Tutorial/chapter_seq_objects.tex Chapter 3. (./_minted-Tutorial/674F0422DD30F7C4B4E808093732659367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55B4E33A5EF0F1A0B51702F25755DA0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [19] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/533611943FA3AA7E144BE9661F0999DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99F306D6A0BEAEBD98D7199579E70E7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E9762250467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [20]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D938642067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C27067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/06A7ACEFB26AA7DD59C8205B22EBC3D967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [21]) (./_minted-Tutorial/8FDF9BC99C1716A778F3C36AB623FB7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D39467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [22]) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF1767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C875367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [23]) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B38667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [24]) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD6467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/183C1BBBB8FD6ED15EF6C8F03298A19767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B5599067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [25] (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [26]) (./_minted-Tutorial/06DBC59F2EAD33E7A95188853787661567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [27] (./_minted-Tutorial/7F9F7641B195E2CACA3F77158DBE190C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/04626286E6AB345CB89BE7B7A049C33867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE45167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/39AA48793A64869F7458C1A2A0D69D2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [28]) (./_minted-Tutorial/3F2DB933A33BDAA3DB2299F2701B61CB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8009655B8BB14028E5E1BDE9BD4B27E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1107FF2DF5C0B4B87F12506011FBD20867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [29]) (./_minted-Tutorial/6BB61362276E8D90F0EB6BF36B274A6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [30] (./Tutorial/chapter_seq_annot.tex Chapter 4. (./_minted-Tutorial/B805770413E9199C6B5EFC63A944737F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [31] (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D40767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [32]) (./_minted-Tutorial/510764EE0BB38AD6C688E719896775070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D84982267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD208567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D90C640781732628151051B15D85C 9070A.pygtex [33]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA60167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [34]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F92667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [35] [36] (./_minted-Tutorial/2D75ABBC1FC42B7382049A62E37C0E4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [37]) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/269F8765456CC9B88BDF6A41BC90473E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5B76E9A877CC1A76394FE84519866D4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [38]) (./_minted-Tutorial/18A924CDEFC2ADA66753F94C892F56B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F9C8B11D1FC2422B35CE8DD6A855273967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/86F990EF8173435624D9A400AC90995967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [39]) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E392067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [40]) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F968967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B234067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [41]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [42]) (./_minted-Tutorial/7693A79AF1B5C3B342CEF51858B48A8567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186CFAEA86C7F6492ED0972D7BC46FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D245767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4EE1174D845FF0CABBFC735D0B5DF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [43] (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF171850166967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [44]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A8312A90F6B97A21EE1619F9A898ED3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [45] (./_minted-Tutorial/023FBCDB71B9572D8D436D0AA1193B6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [46] (./Tutorial/chapter_seqio.tex Chapter 5. (./_minted-Tutorial/DBAB0A8061EF77EEA47B4AA55BAA583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB67814FA033DCB1376922271CBD58A8 A4A36.pygtex [47]) (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE50095414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F114FA033DCB1376922271CBD58A8 A4A36.pygtex [48]) (./_minted-Tutorial/C82398A4A04383A063D2E6488112305214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC049107360C640781732628151051B15D85C 9070A.pygtex) [49] (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C260C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD16222114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD8214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [50]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E7345114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC3950C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/693D94A81EEABF91A72754E60DEB360614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/AD214E544DAF411AB89A7DCBECDEFFD10C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/E5529B4EE3E3DFEBAAC551606BEAEC6114FA033DCB1376922271CBD58A8 A4A36.pygtex [51]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C9167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [52]) (./_minted-Tutorial/AFDE811EFDEDCFD9BBD0CAA9BF7F35C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C0967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [53] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD47614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E42159900C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D714FA033DCB1376922271CBD58A8 A4A36.pygtex [54]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA60C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3A5DDBC5C437B752848EE8AB449D41AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [55]) (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [56]) (./_minted-Tutorial/A1A806B513EE80294615F1F6C56CA22F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1075DB6AF9E4A3F207521105E503858714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB814FA033DCB1376922271CBD58A8 A4A36.pygtex [57]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E830C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/53F70E2F1CBA6BCBDCE4071375628CF767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [58] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [59]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 851--856 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [62] (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD734214FA033DCB1376922271CBD58A8 A4A36.pygtex [63]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C60C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D40C640781732628151051B15D85C 9070A.pygtex [64]) (./_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [65] (./_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/218C0A230BCAE3B7E030880B471BA86367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex [66]) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1341--1343 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF420C640781732628151051B15D85C 9070A.pygtex [69]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [70]) (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A3107767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F20C640781732628151051B15D85C 9070A.pygtex) [71] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C56040767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD3310C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B445330C640781732628151051B15D85C 9070A.pygtex [72]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF75667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE0C640781732628151051B15D85C 9070A.pygtex) [73] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF0200C640781732628151051B15D85C 9070A.pygtex [74]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C50C640781732628151051B15D85C 9070A.pygtex) [75] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D31867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A237144770C640781732628151051B15D85C 9070A.pygtex [76]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 434--435 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [87]) (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [89] (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1686--1689 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F881852628386867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/F08297D25DBB0EC458EEDF5510780E9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1972--2016 [][] [99] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [100] [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C96493DCAF9B522114CF4E5E2ED59EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [103] (./_minted-Tutorial/385490B66B3AC742DD6257196C784FE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BF27E9BF2471340998870C4A3429659267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5F255D6E493419E5F523F2A975278067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C5780017603AFBC3BB3E9F52ED6688C514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E2D8402A42C488B43E823D056683EE7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C93EE09C24214EFB103597E967BC093E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD99642E498E0D36D353C8D0E91819C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [104]) (./_minted-Tutorial/147547C6C0B329E642CE7584B58DDCED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0F1FEB8757C2ABBEFF5A5933C033854A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C2A81981348FC122290D4BF339EF28067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [105]) (./_minted-Tutorial/0D2A1E880F29600B639B45481855F3CF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1B1BD63B0E1791A94C1591A879316E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E0CC5559A1B54F1DFFC0C95E9F657BC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C3A68CFDB89C0C63A10B21CD7364FEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [106] (./_minted-Tutorial/6A00D4BA65DCCBE19BE0A5C25F13423067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C81CE609C3C74FF6DDE53A3528FDA3A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [107] (./_minted-Tutorial/7808362E1897955C4D84B6A5C725B37067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/082EF6E387B649F7F6B9332ECA3C14FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8E736723204677A93FE4D75F2EB836567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E1F81118C07022DC3AE1F5936BE043AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D2FD508C41C176AD7A00FFAD0280C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3363B2217CB2D6762D6F05CF96CEB6EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [108] (./_minted-Tutorial/6AFB7518828CB5CE2786BB1F05FA196667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2CB6704BA931CF6F3C30DE5475D088D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [109]) (./_minted-Tutorial/F4D1EFD0A75F8F251D61853DB5B12A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94D69571A69F80E3CCD32B0AFD10CBB467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E624B311569CC6FAA91D2E8671D827FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [110]) (./_minted-Tutorial/7442AA52B0FC887EC2AAC73A4E59FFFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA7767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [111]) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF79660067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 2671--2672 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [112] (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [113]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/819EB88A2CBCC7948E4BEBE7FB9F80EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22DC4F8C7ADBE16392AA93A6EF2819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/171A69BE62E368AD65396E23A20B1DEE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1C712272F319372A1AB78DEB403D23367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [114]) (./_minted-Tutorial/C7C0911CDDC1913791B1BD1EDA0EC55F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F13283947C7FDCA9456A70797E029A7367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [115]) (./_minted-Tutorial/F31773576B5C3B14C8BCFC3D71E2671467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [116]) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E656D3A6BB3675CEC995C2C398DA729367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31A4214F0316300852C263796C130BE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [117]) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AB42E81B0039139237BF82BA22516C8B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F45B7CF5E8DCF44722DA12A77C5BD96967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/256D8F4D1BB7E6301923B808B6EEB34567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7AFBDEDDA8F411FC4281444B70E6021E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [118]) (./_minted-Tutorial/6B4057929CCF1526CF34FF943CFE313567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9730D42326723F9A4A3771D68D644E7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E3A6838E914945B67D684750F42B90B267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [119]) (./_minted-Tutorial/A117079E905A3317941FA3CB9457C22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA82527867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55D34AF6272FC77B12E7D4DD16884A6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A5A764AD6E5C1A70216D27249F68009367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [120]) (./_minted-Tutorial/54EF0A3F068FF357EC3C51C6E1172A5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/54D7EA4835796C5C4162263077D6191C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CEB2F5A09DE2611D752331C16E5BE61F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D8624166470767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B50C640781732628151051B15D85C 9070A.pygtex [121]) (./_minted-Tutorial/BCCC189D6984A3CAE23757DF96064B4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DFB937A17182FF8FB5EABF3F70A58B0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D0C640781732628151051B15D85C 9070A.pygtex [122]) (./_minted-Tutorial/4DC21B98C2C48E89E7C16C6BAB13C5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9ED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A29DE03FF59071EADD7632CC7B11243E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [123]) (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D9F7C1083DA643BDA1083E79D82EF2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20711981BAB695B8006B7A92E4859CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [124] (./Tutorial/chapter_blast.tex Chapter 7. [125] (./_minted-Tutorial/04BEBF413314D7A51FC0F91D3066CE4F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [126]) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B402706802BF02F25F9B09CDB22A3FEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [127]) [128] (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE521800467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F4039467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDFE599DAB8ED6AC4F17D4FC6F0230BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D23867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F90D3141F79DD2447A9059C65E1C6B4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B19240C640781732628151051B15D85C 9070A.pygtex [130]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. [151] (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [152] (./_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [153]) (./_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [154]) (./_minted-Tutorial/1FE33E4DDF6E596EA7687FB6F017F09967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C6867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4BD3C61B53064F601B4477CDD3106A667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B6409EA2F4B25B8F136CE97DC95E8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [155]) (./_minted-Tutorial/36931D2CFB3ECF0D53B3D7376832300467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/ED23259F6CF56D8483B68EF02BB7325067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [156] (./_minted-Tutorial/96245EB54DC7A4475CD270566892BAE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [157] [158]) (./_minted-Tutorial/042DA7A7135DAEF797FB2EE6170C3B6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/11417087354B0B78128E27B0162F48D514FA033DCB1376922271CBD58A8 A4A36.pygtex [159]) (./_minted-Tutorial/51CC2C09DB95235CA19612EAFF65F48767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [160]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5AB8B67C801B8858B19590FE5D018BA367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7455566FBE10CCFD5236DF65992A9F7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [161]) (./_minted-Tutorial/6E7EC19AB4E894FD7BECB47DC082FC3867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E096EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/0290A0C926605EF68EF2EEEAEB078A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [162]) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF380C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/DDE0AA7C839DD601590297B5D523D03B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB860C640781732628151051B15D85C 9070A.pygtex) [163] (./_minted-Tutorial/BE0AC194CA3417BFC49309A9791ED35B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8BFD5A5D2A0A2DB21DA15E3F1719D3F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B0C640781732628151051B15D85C 9070A.pygtex [164]) (./_minted-Tutorial/06D29A54CBCE7E9BEC9B02AF3737953F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/115C0D8716DAB358EAFF936486F27AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [165] (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/97FFA15DF713393C0351F9F947AC446667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34883991B974FF1C1BE2D18B230693C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/41118C19A2E462F9721E8AB1E52AAFC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [166]) (./_minted-Tutorial/8D1D071E3CA3DD9187A6F2C35836C58A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E297F3C90950B761CCB974F597BCC1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/079D37C5A2B3943F37FA4CC9C5C43BC767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5056BF2116652C732E1D8E3CDA11D6AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [167] (./_minted-Tutorial/4997CC17B3360B104654D2ED20FA8B4067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/473B4163A14D626D6B7A08A26A0A126667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F20190C640781732628151051B15D85C 9070A.pygtex [168]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B62467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C337E8D92F5A543D90F4D2C8BCBF18367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [169]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B875C8F385654DD9607A0DAA82B3371067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D46819E08D3CDD954897218A7EB7C8C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [170]) (./_minted-Tutorial/F62235DAC4152853E8C6EBBD7E2D286167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [171] (./_minted-Tutorial/491F8A9C8CFC3BB4763B296852A6D1D567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7725E37E412C564C008C3BCECB547CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B64203867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8905908F46BA67CB99A3360F253875C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [172]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F151290BCF14625BA5E4CD26A7FB1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [173]) (./_minted-Tutorial/824F6600A92AA40841D5D9A4C2EDC5FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3EC6E0F9D852E0B8DED607938A7279767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E8FC03C2B925F09D2849BD1DDCBB384867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A137A30778671FFE0F193EED7A8819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4EDDF5C23B0FCCC279960365B499A16C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [174]) (./_minted-Tutorial/D49E38D9D1357F6225DB42AC5AD5ED7E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC6CFA7B6751FFF8C74660FCC40D3C4567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB9364967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [175] (./_minted-Tutorial/FE862EFCF9F786EA3C4D97E3821A5CAA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7212F8F4D805E6009D8612AB61498E2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B038E9BC100BB2A231E2B4BF11B0330C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F963367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E93113A22D275DCF1ED22A91F77D57414FA033DCB1376922271CBD58A8 A4A36.pygtex [176]) (./_minted-Tutorial/4F9D9C998FB1DECE2FBF932B39921FFA14FA033DCB1376922271CBD58A8 A4A36.pygtex [177]) (./_minted-Tutorial/826A4111F6CE74D7A673B6C8F5681FC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F52B50369F8EBC15506CCA30EE3F873367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [178] (./Tutorial/chapter_uniprot.tex Chapter 10. (./_minted-Tutorial/DC3FD651AB93A0CE9D668FE4206D1A8667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A66867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD676867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/930B60BD569CAAF368B0E614553F303067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [179] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA651918267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68D834E8AB9E722FD7953C65DB7E9FDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD6922867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D1467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [180]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A451791867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF256282240C640781732628151051B15D85C 9070A.pygtex [181]) (./_minted-Tutorial/3876A0F1CD2CBCD824C73B244059EE4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [182]) (./_minted-Tutorial/7A92C6B39F0BC9AE063090BDDCD011DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B0C640781732628151051B15D85C 9070A.pygtex [183]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC78367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [184] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [185]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [186]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [187]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [188] (./Tutorial/chapter_pdb.tex Chapter 11. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C2285367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E6908567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [189]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA738867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB3567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36B58FEFA589A67048E7D5B63D489DAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB823167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [190] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E1867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A02467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [191]) (./_minted-Tutorial/05F3B09A7CBE08B1C91DE55284F12C2867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [192] Overfull \hbox (13.022pt too wide) in paragraph at lines 263--265 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D97967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [193] [194 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD85567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB24767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E272762267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [195] (./_minted-Tutorial/2F13678C6026DEBF0D98D4214CDF499867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE3953D86837855582C4B8B9F38D7FD667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [196] (./_minted-Tutorial/D15D1F955440960DB3C5206BF3EEE29E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/652F2E49D1B3634A04F3CB950B38570467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [197]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC8809867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB1249267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84495A3B19FA62DBFC292B309E5DE1E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [198]) (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [199] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB9067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B12867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [200]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF23189967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87466E9C05D4662C6164A2AFA3A69C4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC266367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA3967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [201]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E66767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/200193443B83EEADE7971FACFD86F16D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A49EF93DADD431750435FD5125A74A0567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [202]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D51872E4871C96F9D4DDBFAF9C4DF2EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [203] Overfull \hbox (42.26714pt too wide) in paragraph at lines 953--957 \OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity) Overfull \hbox (3.8904pt too wide) in paragraph at lines 973--993 [][] (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [204]) LaTeX Warning: Command \r invalid in math mode on input line 1046. (./_minted-Tutorial/0F60C02FB1C0A5EBADB8EF693216594667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [205] (./_minted-Tutorial/163F04F633C696E8F41EBFFBB74DAF9D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84DC73903FA70E943C63131089E2ED9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [206] [207] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [208] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [209]) [210] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [211])) [212] (./Tutorial/chapter_phylo.tex Chapter 13. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [213]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/6382EC6908438B3E67C757E70A11466C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [216 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/6D2EF2116C7B06D5B8D357EA567F832E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A145A6C1AAD034F2FF71DE52310A2BD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/787FD2B6485DC30362A59A325340738367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F5567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [217]) (./_minted-Tutorial/9DD9A1F0A4FFCEEE15CCB35AFAE0B5FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7692F6F4FEC56E165A881DE3F8A965167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. [218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F155F8EF3B63ECD9B6708A42B8F5F72A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [225]) (./_minted-Tutorial/CEBDE9089C5A4F125D8DD8D4E6ACD9C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F3B74C4B4D1FF3D387E6F57F726D17767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0517D975CF92331B81AF837F9D25717367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C66E35936EA68A132264FDF63F70A42A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/666DFB2D351C7C4DE86ECB38CCBB491867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [226]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F6124319202267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/02A6CF1EA94D619AE2B9428BDA4531C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB247667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [227] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA0C640781732628151051B15D85C 9070A.pygtex [228]) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD1D7AEBB145784C9665DAA472D55CE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [229]) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E778DA34B5EC9B33527CC22435275C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF920C640781732628151051B15D85C 9070A.pygtex [230]) (./_minted-Tutorial/B5E175DBFE536E62D3BB466A47FD029F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [231]) (./_minted-Tutorial/7F5E0E05D69E7F9EC30F2A5CD5D9B5F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [232]) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/696A69FC8317D40C8605CBADFDA5D87767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [233] (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6382581C9B01D86887B13EFD1FA7AFA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C37867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C1EF8469C0F4B427273EE106072F9E6667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [234]) (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E440C640781732628151051B15D85C 9070A.pygtex [235]) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 602--605 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B8467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [236]) (./_minted-Tutorial/CB1A766DCCC9D440884673396E01205367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA70C640781732628151051B15D85C 9070A.pygtex [237]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C09EEE739CAD078852B77A784E1269267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [238] [239]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F2640667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B5EBBADDB3E7B53C5C4AED82E42FFC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0B25C484239457B0395121E60BF5149567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8B39433E243DA74D8945D4CCEE7060567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [240]) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [241]) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3F030F5FA6A7817CFA605062601C81267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [242]) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F2A64376DB87D5A7AB48BFE3760B0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [243]) (./_minted-Tutorial/22387CA0FB9349FBC21B30A09B80342067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A4D3A313CCE21054A332F39A60F4F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC6389F07C07315B68A4843F8EC4A8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA16167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [244] (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E2567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A509267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C8607367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE97067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [245]) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [246]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E32267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD726160367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA247367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [247]) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [248] (./_minted-Tutorial/63EC9F933A4699B71D633AB9C35237C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5032B21DEC5EBE299D472B0AF220432A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F44720C640781732628151051B15D85C 9070A.pygtex) [249] (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/852A3852541269829CE5DF380357F2CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AC8B7A8ADEC6FEB0B1260E665CF238B667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [250]) [251] (./Tutorial/chapter_cluster.tex Chapter 15. [252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [262] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [263] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [264]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [265] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C17567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [266] Overfull \hbox (106.77225pt too wide) in paragraph at lines 653--655 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [267] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A7DB1B14B8C3B59B03D102D4BEECDD167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D220C09E8614EBE54BD07A8C18AAC3367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [268] Overfull \hbox (25.39864pt too wide) in paragraph at lines 737--748 [] [269] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [270] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [271] (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA850467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [272] Overfull \hbox (106.77225pt too wide) in paragraph at lines 927--929 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [273]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 984--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [274] (./Tutorial/chapter_learning.tex Chapter 16. [275] (./_minted-Tutorial/8C8664D7942C9DDA1DE175A432DAD57267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [276]) (./_minted-Tutorial/390D9013E6AF7385E3C5A71EC44014AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D87A6F5674B92E17575B5F1479772CA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [277]) [278] (./_minted-Tutorial/183EBB0903E699FF7289E5FDA71CB09667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E494FD25838EE4C9E476EBA48BDF0CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B53BAB1CC7569CE8ADFECF2CFC02D40267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94C0A9A9293B19D950018F966B967E8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [279]) (./_minted-Tutorial/A1B56761C52CC91D59E84159B69EC85E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 280. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 280. [280] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 288. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 288. (./_minted-Tutorial/AE2B91C0366D79644B870EB1EB9436E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 300. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 300. (./_minted-Tutorial/B35CDBE12860937BD1F854583E7BA59567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FF01A8BA64DD59AF7C1265FFBD6C1B5267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/27D68FCC443982B3438F0C03A4D541D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [281]) (./_minted-Tutorial/AEF267C3082CB68394DCEE656CEB2FC167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A38355D92EE3DC8D96655428C0CEDC1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/10829292EF1E211AEAC19B179A46CD1067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7F43A5B55F7492DFDBA4E17BF7F34F4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [282])) [283] (./Tutorial/chapter_graphics.tex Chapter 17. [284] (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D81614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B03514FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA714FA033DCB1376922271CBD58A8 A4A36.pygtex [285]) Excluding 'htmlonly' comment. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E14FA033DCB1376922271CBD58A8 A4A36.pygtex [286 <./images/plasmid_linear.png (PNG copy)>]) [287 <./images/pla smid_circular.png (PNG copy)>] (./_minted-Tutorial/5D58687CD77437A3DD50DABD32F1536714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0EA68B85D005018D196EB15C866B9F3814FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D85014FA033DCB1376922271CBD58A8 A4A36.pygtex [288]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B9414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C14FA033DCB1376922271CBD58A8 A4A36.pygtex [289] [290 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8 A4A36.pygtex [291] [292 <./images/GD_sigils.png>] [293 <./images/GD_sigil_arrow _shafts.png>] [294 <./images/GD_sigil_arrow_heads.png>] [295]) Excluding 'htmlonly' comment. [296 <./images/plasmid_linear_nice.png (PNG copy) >] [297 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [298]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [299]) Excluding 'htmlonly' comment. [300 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex [301]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [302] Excluding 'htmlonly' comment. [303 <./image s/three_track_cl.png>] [304 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) [305] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [306] [307 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8 A4A36.pygtex [308]) Excluding 'htmlonly' comment.) [309] (./Tutorial/chapter_kegg.tex Chapter 18. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [310] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B14FA033DCB1376922271CBD58A8 A4A36.pygtex [311]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C950C640781732628151051B15D85C 9070A.pygtex)) [312] (./Tutorial/chapter_phenotype.tex Chapter 19. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [313] (./_minted-Tutorial/F7E0F1384D5EE10CDFEDB2428F50CCC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB08167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6CD5F177651EF61E679B9FAF6C25BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [314]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D720667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [315]) (./_minted-Tutorial/EE7361AC934053D42AE642DBF97DE34A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [316]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [317] (./Tutorial/chapter_cookbook.tex Chapter 20. (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB14FA033DCB1376922271CBD58A8 A4A36.pygtex [318]) (./_minted-Tutorial/FF8B764D5420CEF9ECE1CDD6385A3BDC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E5716467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [319] (./_minted-Tutorial/D24532DF36691735DACEF9DD7062845467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/54D3F8BEB8094C8ADFFB26585CE1463814FA033DCB1376922271CBD58A8 A4A36.pygtex [320]) (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F6414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A023964706114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B14FA033DCB1376922271CBD58A8 A4A36.pygtex) [321] (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC6554114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE40879314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D914FA033DCB1376922271CBD58A8 A4A36.pygtex [322]) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA214FA033DCB1376922271CBD58A8 A4A36.pygtex) [323] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF64183114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F3545014FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (5.83499pt too wide) in paragraph at lines 452--456 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [324] (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA55614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A14FA033DCB1376922271CBD58A8 A4A36.pygtex [325]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F891514FA033DCB1376922271CBD58A8 A4A36.pygtex [326]) [327] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8 A4A36.pygtex [328]) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [329] (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/41250203CD471B54840A6F5E1188318D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [330] (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BAE95C3681F5665B01248E86DAC866B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE9671DEE2B114F544A5881F074C33B214FA033DCB1376922271CBD58A8 A4A36.pygtex [331]) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A630520C640781732628151051B15D85C 9070A.pygtex [332]) (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B714FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. [333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E81665614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [341] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB53006514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A4014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D04314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7C14FA033DCB1376922271CBD58A8 A4A36.pygtex [342]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C97367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [343]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5740381D1C5E453AC66BA80B4940791567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/000D4DEB94FD9E29F9808AD61CE02B1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [346] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [347]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [348] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [349]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [350]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [351] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [352] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [353] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [354] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. [357] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [358]) [359] (./Tutorial/chapter_appendix.tex Chapter 24. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A46285914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B4214FA033DCB1376922271CBD58A8 A4A36.pygtex [360]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C4214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A20367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [361] [362] [363] [364] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (365 pages, 2524038 bytes). Transcript written on Tutorial.log. pdflatex --shell-escape "\def\bpversion{1.79}\input{Tutorial}" This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))/usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux LaTeX Warning: Label `sec:pairwise-general-gapscores' multiply defined. ) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./Tutorial.out) (./Tutorial.out) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{36}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default-pyg-prefix.pygstyle) (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [11 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [12]) [13] (./Tutorial/chapter_quick_start.tex Chapter 2. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [14]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [15] (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B021334678185567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [16]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [17]) [18] (./Tutorial/chapter_seq_objects.tex Chapter 3. (./_minted-Tutorial/674F0422DD30F7C4B4E808093732659367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55B4E33A5EF0F1A0B51702F25755DA0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [19] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/533611943FA3AA7E144BE9661F0999DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99F306D6A0BEAEBD98D7199579E70E7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E9762250467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [20]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D938642067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C27067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/06A7ACEFB26AA7DD59C8205B22EBC3D967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [21]) (./_minted-Tutorial/8FDF9BC99C1716A778F3C36AB623FB7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D39467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [22]) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF1767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C875367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [23]) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B38667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [24]) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD6467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/183C1BBBB8FD6ED15EF6C8F03298A19767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B5599067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [25] (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [26]) (./_minted-Tutorial/06DBC59F2EAD33E7A95188853787661567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [27] (./_minted-Tutorial/7F9F7641B195E2CACA3F77158DBE190C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/04626286E6AB345CB89BE7B7A049C33867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE45167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/39AA48793A64869F7458C1A2A0D69D2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [28]) (./_minted-Tutorial/3F2DB933A33BDAA3DB2299F2701B61CB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8009655B8BB14028E5E1BDE9BD4B27E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1107FF2DF5C0B4B87F12506011FBD20867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [29]) (./_minted-Tutorial/6BB61362276E8D90F0EB6BF36B274A6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [30] (./Tutorial/chapter_seq_annot.tex Chapter 4. (./_minted-Tutorial/B805770413E9199C6B5EFC63A944737F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [31] (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D40767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [32]) (./_minted-Tutorial/510764EE0BB38AD6C688E719896775070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D84982267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD208567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D90C640781732628151051B15D85C 9070A.pygtex [33]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA60167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [34]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F92667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [35] [36] (./_minted-Tutorial/2D75ABBC1FC42B7382049A62E37C0E4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [37]) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/269F8765456CC9B88BDF6A41BC90473E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5B76E9A877CC1A76394FE84519866D4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [38]) (./_minted-Tutorial/18A924CDEFC2ADA66753F94C892F56B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F9C8B11D1FC2422B35CE8DD6A855273967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/86F990EF8173435624D9A400AC90995967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [39]) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E392067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [40]) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F968967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B234067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [41]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [42]) (./_minted-Tutorial/7693A79AF1B5C3B342CEF51858B48A8567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186CFAEA86C7F6492ED0972D7BC46FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D245767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4EE1174D845FF0CABBFC735D0B5DF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [43] (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF171850166967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [44]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A8312A90F6B97A21EE1619F9A898ED3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [45] (./_minted-Tutorial/023FBCDB71B9572D8D436D0AA1193B6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [46] (./Tutorial/chapter_seqio.tex Chapter 5. (./_minted-Tutorial/DBAB0A8061EF77EEA47B4AA55BAA583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB67814FA033DCB1376922271CBD58A8 A4A36.pygtex [47]) (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE50095414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F114FA033DCB1376922271CBD58A8 A4A36.pygtex [48]) (./_minted-Tutorial/C82398A4A04383A063D2E6488112305214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC049107360C640781732628151051B15D85C 9070A.pygtex) [49] (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C260C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD16222114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD8214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [50]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E7345114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC3950C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/693D94A81EEABF91A72754E60DEB360614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/AD214E544DAF411AB89A7DCBECDEFFD10C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/E5529B4EE3E3DFEBAAC551606BEAEC6114FA033DCB1376922271CBD58A8 A4A36.pygtex [51]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C9167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [52]) (./_minted-Tutorial/AFDE811EFDEDCFD9BBD0CAA9BF7F35C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C0967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [53] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD47614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E42159900C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D714FA033DCB1376922271CBD58A8 A4A36.pygtex [54]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA60C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3A5DDBC5C437B752848EE8AB449D41AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [55]) (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [56]) (./_minted-Tutorial/A1A806B513EE80294615F1F6C56CA22F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1075DB6AF9E4A3F207521105E503858714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB814FA033DCB1376922271CBD58A8 A4A36.pygtex [57]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E830C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/53F70E2F1CBA6BCBDCE4071375628CF767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [58] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [59]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 851--856 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [62] (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD734214FA033DCB1376922271CBD58A8 A4A36.pygtex [63]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C60C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D40C640781732628151051B15D85C 9070A.pygtex [64]) (./_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [65] (./_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/218C0A230BCAE3B7E030880B471BA86367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex [66]) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1341--1343 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF420C640781732628151051B15D85C 9070A.pygtex [69]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [70]) (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A3107767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F20C640781732628151051B15D85C 9070A.pygtex) [71] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C56040767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD3310C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B445330C640781732628151051B15D85C 9070A.pygtex [72]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF75667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE0C640781732628151051B15D85C 9070A.pygtex) [73] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF0200C640781732628151051B15D85C 9070A.pygtex [74]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C50C640781732628151051B15D85C 9070A.pygtex) [75] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D31867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A237144770C640781732628151051B15D85C 9070A.pygtex [76]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 434--435 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [87]) (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [89] (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1686--1689 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F881852628386867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/F08297D25DBB0EC458EEDF5510780E9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1972--2016 [][] [99] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [100] [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C96493DCAF9B522114CF4E5E2ED59EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [103] (./_minted-Tutorial/385490B66B3AC742DD6257196C784FE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BF27E9BF2471340998870C4A3429659267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5F255D6E493419E5F523F2A975278067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C5780017603AFBC3BB3E9F52ED6688C514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E2D8402A42C488B43E823D056683EE7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C93EE09C24214EFB103597E967BC093E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD99642E498E0D36D353C8D0E91819C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [104]) (./_minted-Tutorial/147547C6C0B329E642CE7584B58DDCED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0F1FEB8757C2ABBEFF5A5933C033854A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C2A81981348FC122290D4BF339EF28067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [105]) (./_minted-Tutorial/0D2A1E880F29600B639B45481855F3CF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1B1BD63B0E1791A94C1591A879316E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E0CC5559A1B54F1DFFC0C95E9F657BC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C3A68CFDB89C0C63A10B21CD7364FEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [106] (./_minted-Tutorial/6A00D4BA65DCCBE19BE0A5C25F13423067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C81CE609C3C74FF6DDE53A3528FDA3A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [107] (./_minted-Tutorial/7808362E1897955C4D84B6A5C725B37067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/082EF6E387B649F7F6B9332ECA3C14FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8E736723204677A93FE4D75F2EB836567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E1F81118C07022DC3AE1F5936BE043AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D2FD508C41C176AD7A00FFAD0280C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3363B2217CB2D6762D6F05CF96CEB6EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [108] (./_minted-Tutorial/6AFB7518828CB5CE2786BB1F05FA196667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2CB6704BA931CF6F3C30DE5475D088D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [109]) (./_minted-Tutorial/F4D1EFD0A75F8F251D61853DB5B12A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94D69571A69F80E3CCD32B0AFD10CBB467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E624B311569CC6FAA91D2E8671D827FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [110]) (./_minted-Tutorial/7442AA52B0FC887EC2AAC73A4E59FFFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA7767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [111]) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF79660067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 2671--2672 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [112] (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [113]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/819EB88A2CBCC7948E4BEBE7FB9F80EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22DC4F8C7ADBE16392AA93A6EF2819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/171A69BE62E368AD65396E23A20B1DEE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1C712272F319372A1AB78DEB403D23367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [114]) (./_minted-Tutorial/C7C0911CDDC1913791B1BD1EDA0EC55F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F13283947C7FDCA9456A70797E029A7367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [115]) (./_minted-Tutorial/F31773576B5C3B14C8BCFC3D71E2671467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [116]) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E656D3A6BB3675CEC995C2C398DA729367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31A4214F0316300852C263796C130BE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [117]) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AB42E81B0039139237BF82BA22516C8B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F45B7CF5E8DCF44722DA12A77C5BD96967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/256D8F4D1BB7E6301923B808B6EEB34567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7AFBDEDDA8F411FC4281444B70E6021E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [118]) (./_minted-Tutorial/6B4057929CCF1526CF34FF943CFE313567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9730D42326723F9A4A3771D68D644E7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E3A6838E914945B67D684750F42B90B267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [119]) (./_minted-Tutorial/A117079E905A3317941FA3CB9457C22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA82527867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55D34AF6272FC77B12E7D4DD16884A6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A5A764AD6E5C1A70216D27249F68009367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [120]) (./_minted-Tutorial/54EF0A3F068FF357EC3C51C6E1172A5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/54D7EA4835796C5C4162263077D6191C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CEB2F5A09DE2611D752331C16E5BE61F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D8624166470767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B50C640781732628151051B15D85C 9070A.pygtex [121]) (./_minted-Tutorial/BCCC189D6984A3CAE23757DF96064B4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DFB937A17182FF8FB5EABF3F70A58B0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D0C640781732628151051B15D85C 9070A.pygtex [122]) (./_minted-Tutorial/4DC21B98C2C48E89E7C16C6BAB13C5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9ED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A29DE03FF59071EADD7632CC7B11243E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [123]) (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D9F7C1083DA643BDA1083E79D82EF2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20711981BAB695B8006B7A92E4859CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [124] (./Tutorial/chapter_blast.tex Chapter 7. [125] (./_minted-Tutorial/04BEBF413314D7A51FC0F91D3066CE4F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [126]) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B402706802BF02F25F9B09CDB22A3FEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [127]) [128] (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE521800467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F4039467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDFE599DAB8ED6AC4F17D4FC6F0230BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D23867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F90D3141F79DD2447A9059C65E1C6B4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B19240C640781732628151051B15D85C 9070A.pygtex [130]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. [151] (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [152] (./_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [153]) (./_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [154]) (./_minted-Tutorial/1FE33E4DDF6E596EA7687FB6F017F09967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C6867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4BD3C61B53064F601B4477CDD3106A667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B6409EA2F4B25B8F136CE97DC95E8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [155]) (./_minted-Tutorial/36931D2CFB3ECF0D53B3D7376832300467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/ED23259F6CF56D8483B68EF02BB7325067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [156] (./_minted-Tutorial/96245EB54DC7A4475CD270566892BAE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [157] [158]) (./_minted-Tutorial/042DA7A7135DAEF797FB2EE6170C3B6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/11417087354B0B78128E27B0162F48D514FA033DCB1376922271CBD58A8 A4A36.pygtex [159]) (./_minted-Tutorial/51CC2C09DB95235CA19612EAFF65F48767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [160]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5AB8B67C801B8858B19590FE5D018BA367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7455566FBE10CCFD5236DF65992A9F7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [161]) (./_minted-Tutorial/6E7EC19AB4E894FD7BECB47DC082FC3867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E096EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/0290A0C926605EF68EF2EEEAEB078A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [162]) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF380C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/DDE0AA7C839DD601590297B5D523D03B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB860C640781732628151051B15D85C 9070A.pygtex) [163] (./_minted-Tutorial/BE0AC194CA3417BFC49309A9791ED35B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8BFD5A5D2A0A2DB21DA15E3F1719D3F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B0C640781732628151051B15D85C 9070A.pygtex [164]) (./_minted-Tutorial/06D29A54CBCE7E9BEC9B02AF3737953F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/115C0D8716DAB358EAFF936486F27AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [165] (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/97FFA15DF713393C0351F9F947AC446667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34883991B974FF1C1BE2D18B230693C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/41118C19A2E462F9721E8AB1E52AAFC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [166]) (./_minted-Tutorial/8D1D071E3CA3DD9187A6F2C35836C58A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E297F3C90950B761CCB974F597BCC1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/079D37C5A2B3943F37FA4CC9C5C43BC767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5056BF2116652C732E1D8E3CDA11D6AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [167] (./_minted-Tutorial/4997CC17B3360B104654D2ED20FA8B4067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/473B4163A14D626D6B7A08A26A0A126667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F20190C640781732628151051B15D85C 9070A.pygtex [168]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B62467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C337E8D92F5A543D90F4D2C8BCBF18367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [169]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B875C8F385654DD9607A0DAA82B3371067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D46819E08D3CDD954897218A7EB7C8C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [170]) (./_minted-Tutorial/F62235DAC4152853E8C6EBBD7E2D286167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [171] (./_minted-Tutorial/491F8A9C8CFC3BB4763B296852A6D1D567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7725E37E412C564C008C3BCECB547CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B64203867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8905908F46BA67CB99A3360F253875C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [172]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F151290BCF14625BA5E4CD26A7FB1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [173]) (./_minted-Tutorial/824F6600A92AA40841D5D9A4C2EDC5FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3EC6E0F9D852E0B8DED607938A7279767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E8FC03C2B925F09D2849BD1DDCBB384867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A137A30778671FFE0F193EED7A8819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4EDDF5C23B0FCCC279960365B499A16C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [174]) (./_minted-Tutorial/D49E38D9D1357F6225DB42AC5AD5ED7E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC6CFA7B6751FFF8C74660FCC40D3C4567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB9364967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [175] (./_minted-Tutorial/FE862EFCF9F786EA3C4D97E3821A5CAA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7212F8F4D805E6009D8612AB61498E2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B038E9BC100BB2A231E2B4BF11B0330C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F963367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E93113A22D275DCF1ED22A91F77D57414FA033DCB1376922271CBD58A8 A4A36.pygtex [176]) (./_minted-Tutorial/4F9D9C998FB1DECE2FBF932B39921FFA14FA033DCB1376922271CBD58A8 A4A36.pygtex [177]) (./_minted-Tutorial/826A4111F6CE74D7A673B6C8F5681FC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F52B50369F8EBC15506CCA30EE3F873367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [178] (./Tutorial/chapter_uniprot.tex Chapter 10. (./_minted-Tutorial/DC3FD651AB93A0CE9D668FE4206D1A8667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A66867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD676867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/930B60BD569CAAF368B0E614553F303067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [179] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA651918267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68D834E8AB9E722FD7953C65DB7E9FDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD6922867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D1467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [180]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A451791867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF256282240C640781732628151051B15D85C 9070A.pygtex [181]) (./_minted-Tutorial/3876A0F1CD2CBCD824C73B244059EE4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [182]) (./_minted-Tutorial/7A92C6B39F0BC9AE063090BDDCD011DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B0C640781732628151051B15D85C 9070A.pygtex [183]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC78367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [184] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [185]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [186]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [187]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [188] (./Tutorial/chapter_pdb.tex Chapter 11. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C2285367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E6908567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [189]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA738867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB3567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36B58FEFA589A67048E7D5B63D489DAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB823167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [190] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E1867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A02467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [191]) (./_minted-Tutorial/05F3B09A7CBE08B1C91DE55284F12C2867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [192] Overfull \hbox (13.022pt too wide) in paragraph at lines 263--265 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D97967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [193] [194 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD85567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB24767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E272762267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [195] (./_minted-Tutorial/2F13678C6026DEBF0D98D4214CDF499867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE3953D86837855582C4B8B9F38D7FD667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [196] (./_minted-Tutorial/D15D1F955440960DB3C5206BF3EEE29E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/652F2E49D1B3634A04F3CB950B38570467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [197]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC8809867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB1249267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84495A3B19FA62DBFC292B309E5DE1E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [198]) (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [199] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB9067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B12867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [200]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF23189967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87466E9C05D4662C6164A2AFA3A69C4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC266367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA3967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [201]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E66767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/200193443B83EEADE7971FACFD86F16D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A49EF93DADD431750435FD5125A74A0567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [202]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D51872E4871C96F9D4DDBFAF9C4DF2EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [203] Overfull \hbox (42.26714pt too wide) in paragraph at lines 953--957 \OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity) Overfull \hbox (3.8904pt too wide) in paragraph at lines 973--993 [][] (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [204]) LaTeX Warning: Command \r invalid in math mode on input line 1046. (./_minted-Tutorial/0F60C02FB1C0A5EBADB8EF693216594667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [205] (./_minted-Tutorial/163F04F633C696E8F41EBFFBB74DAF9D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84DC73903FA70E943C63131089E2ED9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [206] [207] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [208] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [209]) [210] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [211])) [212] (./Tutorial/chapter_phylo.tex Chapter 13. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [213]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/6382EC6908438B3E67C757E70A11466C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [216 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/6D2EF2116C7B06D5B8D357EA567F832E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A145A6C1AAD034F2FF71DE52310A2BD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/787FD2B6485DC30362A59A325340738367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F5567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [217]) (./_minted-Tutorial/9DD9A1F0A4FFCEEE15CCB35AFAE0B5FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7692F6F4FEC56E165A881DE3F8A965167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. [218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F155F8EF3B63ECD9B6708A42B8F5F72A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [225]) (./_minted-Tutorial/CEBDE9089C5A4F125D8DD8D4E6ACD9C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F3B74C4B4D1FF3D387E6F57F726D17767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0517D975CF92331B81AF837F9D25717367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C66E35936EA68A132264FDF63F70A42A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/666DFB2D351C7C4DE86ECB38CCBB491867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [226]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F6124319202267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/02A6CF1EA94D619AE2B9428BDA4531C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB247667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [227] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA0C640781732628151051B15D85C 9070A.pygtex [228]) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD1D7AEBB145784C9665DAA472D55CE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [229]) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E778DA34B5EC9B33527CC22435275C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF920C640781732628151051B15D85C 9070A.pygtex [230]) (./_minted-Tutorial/B5E175DBFE536E62D3BB466A47FD029F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [231]) (./_minted-Tutorial/7F5E0E05D69E7F9EC30F2A5CD5D9B5F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [232]) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/696A69FC8317D40C8605CBADFDA5D87767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [233] (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6382581C9B01D86887B13EFD1FA7AFA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C37867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C1EF8469C0F4B427273EE106072F9E6667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [234]) (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E440C640781732628151051B15D85C 9070A.pygtex [235]) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 602--605 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B8467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [236]) (./_minted-Tutorial/CB1A766DCCC9D440884673396E01205367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA70C640781732628151051B15D85C 9070A.pygtex [237]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C09EEE739CAD078852B77A784E1269267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [238] [239]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F2640667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B5EBBADDB3E7B53C5C4AED82E42FFC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0B25C484239457B0395121E60BF5149567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8B39433E243DA74D8945D4CCEE7060567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [240]) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [241]) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3F030F5FA6A7817CFA605062601C81267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [242]) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F2A64376DB87D5A7AB48BFE3760B0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [243]) (./_minted-Tutorial/22387CA0FB9349FBC21B30A09B80342067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A4D3A313CCE21054A332F39A60F4F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC6389F07C07315B68A4843F8EC4A8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA16167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [244] (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E2567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A509267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C8607367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE97067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [245]) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [246]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E32267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD726160367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA247367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [247]) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [248] (./_minted-Tutorial/63EC9F933A4699B71D633AB9C35237C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5032B21DEC5EBE299D472B0AF220432A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F44720C640781732628151051B15D85C 9070A.pygtex) [249] (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/852A3852541269829CE5DF380357F2CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AC8B7A8ADEC6FEB0B1260E665CF238B667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [250]) [251] (./Tutorial/chapter_cluster.tex Chapter 15. [252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [262] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [263] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [264]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [265] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C17567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [266] Overfull \hbox (106.77225pt too wide) in paragraph at lines 653--655 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [267] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A7DB1B14B8C3B59B03D102D4BEECDD167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D220C09E8614EBE54BD07A8C18AAC3367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [268] Overfull \hbox (25.39864pt too wide) in paragraph at lines 737--748 [] [269] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [270] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [271] (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA850467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [272] Overfull \hbox (106.77225pt too wide) in paragraph at lines 927--929 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [273]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 984--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [274] (./Tutorial/chapter_learning.tex Chapter 16. [275] (./_minted-Tutorial/8C8664D7942C9DDA1DE175A432DAD57267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [276]) (./_minted-Tutorial/390D9013E6AF7385E3C5A71EC44014AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D87A6F5674B92E17575B5F1479772CA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [277]) [278] (./_minted-Tutorial/183EBB0903E699FF7289E5FDA71CB09667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E494FD25838EE4C9E476EBA48BDF0CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B53BAB1CC7569CE8ADFECF2CFC02D40267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94C0A9A9293B19D950018F966B967E8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [279]) (./_minted-Tutorial/A1B56761C52CC91D59E84159B69EC85E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 280. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 280. [280] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 288. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 288. (./_minted-Tutorial/AE2B91C0366D79644B870EB1EB9436E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 300. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 300. (./_minted-Tutorial/B35CDBE12860937BD1F854583E7BA59567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FF01A8BA64DD59AF7C1265FFBD6C1B5267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/27D68FCC443982B3438F0C03A4D541D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [281]) (./_minted-Tutorial/AEF267C3082CB68394DCEE656CEB2FC167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A38355D92EE3DC8D96655428C0CEDC1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/10829292EF1E211AEAC19B179A46CD1067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7F43A5B55F7492DFDBA4E17BF7F34F4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [282])) [283] (./Tutorial/chapter_graphics.tex Chapter 17. [284] (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D81614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B03514FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA714FA033DCB1376922271CBD58A8 A4A36.pygtex [285]) Excluding 'htmlonly' comment. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E14FA033DCB1376922271CBD58A8 A4A36.pygtex [286 <./images/plasmid_linear.png (PNG copy)>]) [287 <./images/pla smid_circular.png (PNG copy)>] (./_minted-Tutorial/5D58687CD77437A3DD50DABD32F1536714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0EA68B85D005018D196EB15C866B9F3814FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D85014FA033DCB1376922271CBD58A8 A4A36.pygtex [288]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B9414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C14FA033DCB1376922271CBD58A8 A4A36.pygtex [289] [290 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8 A4A36.pygtex [291] [292 <./images/GD_sigils.png>] [293 <./images/GD_sigil_arrow _shafts.png>] [294 <./images/GD_sigil_arrow_heads.png>] [295]) Excluding 'htmlonly' comment. [296 <./images/plasmid_linear_nice.png (PNG copy) >] [297 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [298]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [299]) Excluding 'htmlonly' comment. [300 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex [301]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [302] Excluding 'htmlonly' comment. [303 <./image s/three_track_cl.png>] [304 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) [305] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [306] [307 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8 A4A36.pygtex [308]) Excluding 'htmlonly' comment.) [309] (./Tutorial/chapter_kegg.tex Chapter 18. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [310] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B14FA033DCB1376922271CBD58A8 A4A36.pygtex [311]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C950C640781732628151051B15D85C 9070A.pygtex)) [312] (./Tutorial/chapter_phenotype.tex Chapter 19. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [313] (./_minted-Tutorial/F7E0F1384D5EE10CDFEDB2428F50CCC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB08167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6CD5F177651EF61E679B9FAF6C25BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [314]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D720667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [315]) (./_minted-Tutorial/EE7361AC934053D42AE642DBF97DE34A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [316]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [317] (./Tutorial/chapter_cookbook.tex Chapter 20. (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB14FA033DCB1376922271CBD58A8 A4A36.pygtex [318]) (./_minted-Tutorial/FF8B764D5420CEF9ECE1CDD6385A3BDC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E5716467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [319] (./_minted-Tutorial/D24532DF36691735DACEF9DD7062845467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/54D3F8BEB8094C8ADFFB26585CE1463814FA033DCB1376922271CBD58A8 A4A36.pygtex [320]) (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F6414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A023964706114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B14FA033DCB1376922271CBD58A8 A4A36.pygtex) [321] (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC6554114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE40879314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D914FA033DCB1376922271CBD58A8 A4A36.pygtex [322]) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA214FA033DCB1376922271CBD58A8 A4A36.pygtex) [323] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF64183114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F3545014FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (5.83499pt too wide) in paragraph at lines 452--456 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [324] (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA55614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A14FA033DCB1376922271CBD58A8 A4A36.pygtex [325]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F891514FA033DCB1376922271CBD58A8 A4A36.pygtex [326]) [327] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8 A4A36.pygtex [328]) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [329] (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/41250203CD471B54840A6F5E1188318D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [330] (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BAE95C3681F5665B01248E86DAC866B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE9671DEE2B114F544A5881F074C33B214FA033DCB1376922271CBD58A8 A4A36.pygtex [331]) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A630520C640781732628151051B15D85C 9070A.pygtex [332]) (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B714FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. [333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E81665614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [341] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB53006514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A4014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D04314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7C14FA033DCB1376922271CBD58A8 A4A36.pygtex [342]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C97367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [343]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5740381D1C5E453AC66BA80B4940791567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/000D4DEB94FD9E29F9808AD61CE02B1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [346] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [347]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [348] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [349]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [350]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [351] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [352] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [353] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [354] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. [357] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [358]) [359] (./Tutorial/chapter_appendix.tex Chapter 24. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A46285914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B4214FA033DCB1376922271CBD58A8 A4A36.pygtex [360]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C4214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A20367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [361] [362] [363] [364] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (365 pages, 2524033 bytes). Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- LaTeX Warning: Reference `sub:The-Structure-object' on page 4 undefined on inpu t line 335. [4] [5] LaTeX Warning: Reference `cap:SMCRA' on page 6 undefined on input line 548. [6] [7 <./images/smcra.png (PNG copy)>] [8] LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 750. LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 779. LaTeX Warning: Reference `sub:Analysis' on page 9 undefined on input line 821. [9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 164966 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 166885 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 166885 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/<>/python-biopython-1.79+dfsg/Doc' make[1]: Leaving directory '/<>/python-biopython-1.79+dfsg' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>/python-biopython-1.79+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p "3.10 3.9" --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:232: set -e; \ mkdir -p /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/home; \ mkdir -p /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc; \ cp -a Doc/Tutorial /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc; \ cp -a Doc/examples /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc; \ cp -a Tests /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build; \ cd /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/home python3.10 run_tests.py --offline /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/run_tests.py:33: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives import distutils.util test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... skipping. Install EMBOSS if you want to use Bio.Emboss (Segmentation fault (core dumped)). test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman' ok test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics Error in setFont('Times-Roman',10) missing the T1 files? Originally : makeT1Font() argument 2 must be str, not None test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_DSSP ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_Polypeptide ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:548: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module. warnings.warn( ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok No entry for terminal type "unknown"; using dumb terminal settings. test_Tutorial ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Seq.py:2008: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead. warnings.warn( ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Seq.py:2954: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:612: BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA) warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:678: BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA) warnings.warn( ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_psw ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SubsMat docstring test ... ok Bio.SubsMat.FreqTable docstring test ... ok Bio.SubsMat.MatrixInfo docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.chisq docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 512 tests in 200.530 seconds Skipping any tests requiring internet access Python version: 3.10.0+ (default, Oct 17 2021, 09:10:32) [GCC 11.2.0] Operating system: posix linux I: pybuild base:232: set -e; \ mkdir -p /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/home; \ mkdir -p /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Doc/Tutorial /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Doc/examples /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Tests /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build; \ cd /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/home python3.9 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... skipping. Install EMBOSS if you want to use Bio.Emboss (Segmentation fault (core dumped)). test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman' ok test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics Error in setFont('Times-Roman',10) missing the T1 files? Originally : makeT1Font() argument 2 must be str, not None test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_DSSP ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_Polypeptide ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py:548: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module. warnings.warn( ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2008: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead. warnings.warn( ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2954: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__init__.py:612: BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA) warnings.warn( /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__init__.py:678: BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA) warnings.warn( ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_psw ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SubsMat docstring test ... ok Bio.SubsMat.FreqTable docstring test ... ok Bio.SubsMat.MatrixInfo docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.chisq docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 512 tests in 202.342 seconds Skipping any tests requiring internet access Python version: 3.9.7 (default, Sep 24 2021, 09:43:00) [GCC 11.2.0] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-wWch4BY2 mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/<>/python-biopython-1.79+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>/python-biopython-1.79+dfsg' dh_auto_install install -d /<>/python-biopython-1.79\+dfsg/debian/tmp pybuild --install -i python{version} -p "3.10 3.9" --dest-dir /<>/python-biopython-1.79\+dfsg/debian/tmp I: pybuild base:232: /usr/bin/python3.10 setup.py install --root /<>/python-biopython-1.79+dfsg/debian/tmp running install running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Medline/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Medline/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/BlatIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/_utils.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/_base.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/query.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/hit.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Compass/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Compass/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Prosite.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Prodoc.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Enzyme.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/LogisticRegression.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Phd.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Ace.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/Phd.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/Ace.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/lcc.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniGene/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniGene/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.h -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/NCBIWWW.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/Record.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/NCBIXML.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/Applications.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/Applications.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/TabIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/QualityIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PdbIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PhdIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/Interfaces.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/NibIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/GckIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SwissIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/IgIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/AceIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SffIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/AbiIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PirIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/TwoBitIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/StandardData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/Nodes.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Nodes.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Nexus.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Trees.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/StandardData.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/Nexus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/Trees.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Seq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/bgzf.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/SeqRecord.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/Seq.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/MarkovModel.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/File.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/MaxEntropy.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/NaiveBayes.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/kNN.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/LogisticRegression.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/SeqFeature.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/pairwise2.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__pycache__/_utils.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/pm_fitting.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/phen_micro.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/AlignInfo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/__pycache__/AlignInfo.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/HOXD70 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/TRANS -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Prank.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/Primer3.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/Applications.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/Primer3.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/Applications.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/_utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt/__pycache__/KeyWList.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/kNN.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqFeature.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/__pycache__/REST.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/REST.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Map/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/bgzf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MauveIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/NexusIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/Interfaces.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MafIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MsfIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/TogoWS/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/TogoWS/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/meme.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/minimal.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/matrix.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/meme.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/clusterbuster.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/xms.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/thresholds.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/alignace.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/pfm.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/transfac.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/mast.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/matrix.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/pfm.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/xms.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/alignace.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/minimal.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/thresholds.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__pycache__/db.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/transfac.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/mast.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Residues.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Des.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Cla.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Raf.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Hie.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Dom.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Des.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Residues.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Cla.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Raf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Hie.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Dom.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/display.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/format.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/common.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/chars.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/__pycache__/Parser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/Parser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Alphabet/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmcifio.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ic_data.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PSEA.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Selection.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Chain.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ResidueDepth.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/StructureBuilder.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/FragmentMapper.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/internal_coords.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/mmcifio.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/NeighborSearch.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/SASA.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/DSSP.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Polypeptide.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Superimposer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ic_rebuild.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBList.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Dice.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/SCADIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/StructureAlignment.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBExceptions.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Atom.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/vectors.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Entity.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/MMCIFParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/HSExposure.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PICIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Residue.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Structure.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/NACCESS.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Model.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Model.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PSEA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/ic_rebuild.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/vectors.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PICIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Atom.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/internal_coords.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/SASA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Selection.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Chain.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/ic_data.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Entity.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/HSExposure.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/SCADIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Dice.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Superimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/NACCESS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Structure.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Residue.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/CAPS/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/CAPS/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Application/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/NOEtools.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/xpktools.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/xpktools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/NOEtools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy/CelFile.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy/__pycache__/CelFile.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo/__pycache__/Record.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo/Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt/GOA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt/__pycache__/GOA.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/MaxEntropy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/cpairwise2module.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/codonseq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/codonseq.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/chisq.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/codonalignment.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/chisq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/BaseTree.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NeXML.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NexusIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/Newick.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_io.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/Consensus.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/CDAO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/CDAOIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_utils.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NewickIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/PhyloXML.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/_utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Newick.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Consensus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/_io.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/psw.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/dnal.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/dnal.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/psw.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqRecord.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/FreqTable.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/Record.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/Scanner.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/utils.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/pairwise2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/Restriction.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/PrintFormat.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/Comparative.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/Distribution.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/KGML_vis.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/Comparative.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/Distribution.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/Utilities.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/Trainer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/MarkovModel.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/Trainer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/Utilities.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NaiveBayes.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/File.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/SCOPData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/CodonTable.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/SCOPData.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/IUPACData.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/IUPACData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/CodonTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/BioSeq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/BioSeqDatabase.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/__init__.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/BioSeq.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/DBUtils.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/Loader.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/Loader.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/DBUtils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result3.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result1.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_cellosaurus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PAML_yn00.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/test.fsa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/fake.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/310.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/3730.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/empty.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/no_smpl1.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/3100.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Abi/test_data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/output.best.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Seq_objs.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SVDSuperimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_PhylipIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/Human_contigs.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/RepBase23.02.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/TRBG361.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/AAA03323.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/A04195.imgt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/embl_with_0_line.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/AE017046.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/101ma_no_coords.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/SC10H5.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/patents.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/xx_after_co.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/U87107.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/epo_prt_selection.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/DD231055_edited.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/DS830848.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/DD231055_edited2.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/EMBL/location_wrap.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_NibIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Compass/comtest1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Compass/comtest2 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_align_substitution_matrices.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Emboss.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_geo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Hie.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Insdc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Restriction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_codonalign.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Wise.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_legacy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nib/test_even_littleendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd_bigendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nib/test_even.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nib/test_even_bigendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd_littleendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/msf/DOA_prot.msf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/msf/W_prot.msf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_sqlite3.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_PdbIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/search_tests_common.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIFIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Ace.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_pairwise_alignment_map.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqUtils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_NCBI_qblast.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_Dice.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Gck copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Gck/artificial.gck -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Gck copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_SeqXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_write.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniGene/Eca.1.2425.data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniGene/Mdm_partial.data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniGene/Hs.2.data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Fasttree_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_test.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/cnksr3.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/length_coords_mismatch.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/humor.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/unfinished.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/invalid.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/corrupt.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/wrong_version.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/bundle_without_target.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MAF/bug2453.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Cluster.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_pairwise2_no_C.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Tutorial.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Phylo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Cluster/cyano.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Cluster/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/wnts.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mock_actin.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mirna.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mock_short_result.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mock_wait.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mock_pcr.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mirna.tab -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/wnts.xml.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mock_orchid.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mock_short_empty.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/mock_disco.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_UniGene.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_TogoWS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/horses.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/reference_dna2.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/interlaced2.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/random.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/sequential2.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/sequential.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/interlaced.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/reference_dna.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/hennigian.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phylip/horses.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Dom.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_KeyWList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_ColorSpiral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.long.2bit -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.bigendian.2bit -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.littleendian.2bit -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_fasta_m10.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/out.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SwissProt.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_MarkovModel.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/test.new -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/bats.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/test_Nexus_input.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/int_node_labels.nwk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/codonposset.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/pairwise2_testCases.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/biosql.ini.appveyor -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_QCPSuperimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Uniprot.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_kNN.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/search_tests_common.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_cellosaurus.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Hie.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBITextParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Consensus.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TCoffee_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_LogisticRegression.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KEGG.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NMR.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/seq_tests_common.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_NACCESS.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PQR.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_motifs_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Dice.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_DSSP.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_align_substitution_matrices.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_RCSBFormats.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Chi2.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_MarkovModel.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Enzyme.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Cla.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Ace.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Prank_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phyml_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_HMMCasino.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDBList.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignInfo.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Seq_objs.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_File.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise_aligner.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Probcons_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_CDAO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBIXML.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_MafIO_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Uniprot.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_nographics.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Exposure.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ExPASy.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_model.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PhyloXML.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_yn00.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Emboss.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsDistribution.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBI_qblast.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_align.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Residues.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SwissProt.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SffIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_bgzf.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_QCPSuperimposer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_graphics.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_codeml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Mafft_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_seq.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_EmbossPrimer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_internal_coords.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_geo.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TreeConstruction.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_CAPS.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Application.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_SASA.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SVDSuperimposer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_legacy.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Wise.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Medline.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Clustalw_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_SMCRA.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SubsMat.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Compass.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Gck.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BWA_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsGeneral.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_psw.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise2.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phenotype_fit.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_PDBIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TogoWS.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_baseml.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqFeature.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_samtools_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/common_BioSQL_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsChromosome.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GenBank.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Cluster.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/requires_internet.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_UniProt_GOA.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise2_no_C.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KEGG_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Dom.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_graphics_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Muscle_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Disordered.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_vectors.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_prodoc.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/common_BioSQL.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phd.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GenomeDiagram.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_KDTree.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Nexus.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Des.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Dialign_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Restriction.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_write.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_prosite.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_features.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KeyWList.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_UniGene.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Blast_Record.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_EMBL_unittest.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqRecord.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ColorSpiral.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_codonalign.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Fasttree_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NaiveBayes.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_HMMGeneral.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqUtils.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/pairwise2_testCases.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Superimposer.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Scop.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_motifs.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Pathway.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Astral.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_networkx.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Raf.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_NeXML.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_PDBParser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phenotype.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Affy.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_CodonTable.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Tutorial.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_write.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez_parser.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_online.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_translate.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ProtParam.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/requires_wise.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_convert.cpython-310.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_GraphicsBitmaps.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/phenotype/Plate_2.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlate_2.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/phenotype/BadPlate.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlate.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/phenotype/Plates.csv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlates.csv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/phenotype/Plate.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/species.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/lysin.trees -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/bad.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/longnames.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/alignment.phylip -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/species.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad2.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/bad_results.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PAML/gen_results.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PQR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PQR/1A80.pqr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PQR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_parse_pdb_header.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_seq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Saf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Saf/saf1.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Saf creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/BioSQL/cor6_6.db -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Phylo_matplotlib.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_PDBParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/ecoli.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/bsubtilis.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/cow.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/cow.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/bsubtilis.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/pig.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/ecoli.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/pig.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Align/hg38.chrom.sizes -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/FSSP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/FSSP/1cnv.fssp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/FSSP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqRecord.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_File.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phd/phd_454 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phd/phd2 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phd/phd1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Phd/phd_solexa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_RCSBFormats.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/tmpdirprankmsa3FvQy0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Phylo_CDAO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Scop.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_SASA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_kNN.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Residues.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_ClustalOmega_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/water2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/short.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/alignret.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/needle.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/needle_asis.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/water.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/cds_forward.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/cds_reverse.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/bac_find.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/no_oligo.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/matcher_pair.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/matcher_simple.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/internal_oligo.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/NirK.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/NirK_full.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Emboss/bac_find.psearch -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Clustalw/promals3d.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Clustalw/hedgehog.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Clustalw/cw02.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Clustalw/odd_consensus.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Clustalw/opuntia.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Clustalw/temp horses.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Clustalw/protein.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_GenBank.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Entrez_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Raf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_write.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDBList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_motifs_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIFParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_EmbossPrimer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_prodoc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_NCBITextParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/output.best.fas -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Registry/bt001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Registry/EDD_RAT.dat -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Registry/seqs.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/P0CK95.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.rdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/H2CNN8.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/F2CXE6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp010 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp011 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp013 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni002 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/R5HY77.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp016 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/Q13639.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.list -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp003 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/H2CNN8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp006 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/P0A186.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp009 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/P97881.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp007 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/P84001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.gff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/keywlist2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp012 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/O23729.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/F2CXE6.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/keywlist.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/Q13639.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp002 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni003 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp008 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp015 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp005 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SwissProt/P60137.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeuralNetwork/enolase.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeuralNetwork/repeat.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_NMR.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_phyml_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/InterProScan/test_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Medline.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001422.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GFF/multi.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802x.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802lc.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/run_tests.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_AbiIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/.coveragerc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_SMCRA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Phylo_NeXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Ace/contig1.ace -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Ace/consed_sample.ace -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Ace/seq.cap.ace -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Phd.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SffIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Enzyme.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.4letter -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.irregular -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/ko00253.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/map03070.png -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/ko00010.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/map00950.rea -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.new -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/compound.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/compound.irregular -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/gene.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/ko01100.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/ko03070.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/KEGG/map01100.png -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SnapGene/sample-d.dna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SnapGene/pFA-KanMX4.dna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SnapGene/sample-e.dna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_phenotype.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_pairwise_aligner.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_vectors.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/paired.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/triple_sff.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Roche/greek.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_NCBI_BLAST_tools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/common_BioSQL.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/alignace.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/meme.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/abdb.xms -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/fourrows.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/REB1.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/Arnt.sites -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/meme.adh.classic.oops.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/fourcolumns.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/transfac.dat -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/MA0056.1.transfac -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/minimal_test.meme -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/clusterbuster.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/clusterbuster.pfm.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/SRF.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Entrez.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_KGML_graphics.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_DSSP.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_model.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/raftest.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SCOP/testDom.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_motifs.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Chi2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Pathway.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/seq_tests_common.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_KEGG_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PAML_baseml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_CodonTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PAML_codeml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_001.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_002.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_003.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_004.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_003.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_35_002.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/mirna.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/psl_35_001.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/psl_35_002.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_005.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_001.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_002.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_004.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_005.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/tmpdirprankmsakGkSQd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PQR.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Clustalw_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CodonUsage copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CodonUsage copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Dialign_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/journals.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/efetch_schemas.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/nucleotide1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/epost1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/espell.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/protein.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary9.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/egquery2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/ncbi_mim.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/biosample.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/epost2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/taxonomy.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed3.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/elink5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/epost3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/egquery1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/nucleotide2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CDAO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/CDAO/test.cdao -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CDAO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/ExtendedPhylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/ExtendedPhylip/primates.phyx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/ExtendedPhylip creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_refresh.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/bam2.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/sam2.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_header.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/bam1.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/bam1_sorted.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/sam1.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/readme.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_header.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/bam2_sorted.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_QualityIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Xdna.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/3JQH.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG_noheader.dssp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2n0n_M1.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/4ZHL.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/d256ba_.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/lib_10_z_5.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/occupancy.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/Wilke_RASA.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1MOM_min.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/alignment_file.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/a_structure.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.rsa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.xyzr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1SSU_mod.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1AS5.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/4CUP.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2OFG.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/4ZHL.mmtf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1LCD.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1SSU_mod.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2XHE.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2XHE.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.asa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/a_structure.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/Sander_RASA.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1LCD.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/4Q9R_min.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.dssp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/Miller_RASA.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/ions.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/header.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/disordered.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1A7G.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/4CUP.mmtf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.mmtf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_tab.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_escape.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_93.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/example_dos.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_short_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_diff_ids.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/example.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/zero_length.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_null.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_faked.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_faked.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_spaces.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/tricky.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/example_dos.fastq.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_tabs.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_faked.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_example.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_double_seq.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_long_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/example.qual -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_del.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_double_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_no_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_vtab.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_space.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_GraphicsDistribution.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_Disordered.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Application.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_BWA_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/bamii.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/foki.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/pvuii.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/crei.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/crei.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/cac81.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/foki.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/taqi.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/taqi.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/bamii.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/pvuii.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Rebase/cac81.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_LogisticRegression.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_StructureAlignment.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa.backbone -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Mauve/simple_short.xmfa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_samtools_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_Superimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-a.xdna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-b.xdna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-c.xprt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Mafft_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PhyloXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Muscle_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NMR/noed.xpk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NMR/out_example.xpk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blat_psl.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_MafIO_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_Polypeptide.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Affy/affy_v3_example.CEL -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Affy/affy_v4_example.CEL -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_family.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/GSE16.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_series.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_affy.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/GSM700.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/GSM691.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/GSM645.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_platform.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/GSM804.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_dual.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/allx.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_features.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/trees-uris.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/timetree.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/meta_taxa.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/trees.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/characters.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/meta_types.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/treebase-record.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/phenoscape.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/sets.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/taxa.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/nexml.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/edgelabels.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NeXML/tolweb.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_human_sample.gpi -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_yeast.gaf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/requires_wise.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_UniProt_GOA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/strict_refs.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/nj_min.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/majority_ref.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/upgma.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/pars3.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/trees.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/msa.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/test.log -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/adam_refs.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/nj.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_GraphicsGeneral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/pro1.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl1.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_nucl.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl4.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl2.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/drosophilla.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/pro5.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/pro2.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl3.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/pro3.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_pro.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/pro4.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/adh.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl5.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SubsMat.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Prank_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/dups.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/lupine.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/aster.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output010.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output015.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/phlox.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output012.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output008.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output002.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/sweetpea.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/flowers.pro.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output004.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output009.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/elderberry.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/rosemary.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output003.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/f002 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output014.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/rose.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/aster_no_wrap.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/f003 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/f001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/tc_out.msf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output013.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output011.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output001.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output016.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output005.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/wisteria.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/lavender.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output006.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/output007.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/loveliesbleeding.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/fa01 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Fasta/centaurea.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_KGML_nographics.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Stockholm/funny.sth -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Stockholm/simple.sth -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Probcons_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NBRF/DMA_nuc.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NBRF/DMB_prot.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NBRF/B_nuc.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NBRF/Cw_prot.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/NBRF/clustalw.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_KGML_graphics_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00488.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00165.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00159.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00432.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00546.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00107.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_ProtParam.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_HMMCasino.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_align.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Phylo_networkx.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_convert.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_bgzf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Nexus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_NACCESS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SubsMat/aaDistrib.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SubsMat/protein_count.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SubsMat/redAADistrib.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SubsMat/protein_freq.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Des.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/EU851978_output.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_version.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_product.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NT_019265.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/protein_refseq.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/EU851978.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/pBAD30.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/no_end_marker.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/tsa_acropora.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/blank_seq.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/protein_refseq2.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/iro.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/KF527485_output.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/1MRR_A.gp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.tsv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/tls_KDHP01000000.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_structured_comment.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/HM138502.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/one_of.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/negative_location.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/origin_line.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/DS830848.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.ffn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/noref.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/gbvrl1_start.seq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/GU949562.1.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/KF527485.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/cor6_6.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/HM138502_output.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/pri1.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/extra_keywords.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/no_origin_no_end.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/arab1.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_accession.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/GenBank/dbsource_wrap.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_NaiveBayes.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_pairwise2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/common_BioSQL_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_PDBIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_TreeConstruction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_ExPASy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_mysql_connector.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_KEGG.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Consensus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_GenomeDiagram.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_prosite.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigils.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/square_test.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_original.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/labels_default.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.eps -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_transparency.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_colors.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/line_graph.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/multi_bar.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/scatter_test_1.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/random_organism.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/labels_default_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/spiral_test.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_circular.svg -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/simple_bar.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/scatter_test_7.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.svg -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_linear.svg -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_original.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/line_graph_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_transparency.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_widths.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_phenotype_fit.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_EMBL_unittest.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_GraphicsChromosome.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_MauveIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/biosql.ini.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Compass.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_CAPS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SeqXML/rna_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SeqXML/global_species_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SeqXML/dna_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SeqXML/corrupt_example2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SeqXML/corrupt_example1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/SeqXML/protein_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_internal_coords.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_Exposure.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_SnapGene.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Blast_Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Astral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_TwoBitIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_HMMGeneral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Affy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_KDTree.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_translate.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta9.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta2.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PhyloXML/bcl_2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PhyloXML/distribution.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PhyloXML/apaf.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PhyloXML/example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PhyloXML/made_up.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqFeature.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Enzymes/lactate.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Enzymes/proline.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Enzymes/valine.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Enzymes/lipoprotein.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/requires_internet.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Cla.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Gck.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_PDB_FragmentMapper.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_psw.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_NCBIXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_EmbossIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_ClustalIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_Entrez_parser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/test_AlignInfo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/c2space.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/c2line.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo2.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/c3space.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/big.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo3.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Tests/PopGen/c3line.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/PF05371_seed.sth -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/m_cold.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/my_blast.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/www_blast.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/ACT_example.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/clustal_run.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/beta.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/nmr/noed.xpk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/nmr/simplepredict.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/simple.dnd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.dnd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/alpha.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/fasta_dictionary.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/getgene.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/fasta_iterator.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/ec_5.4.2.2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/Plates.csv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/swissprot.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/examples/my_blat.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_kegg.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_entrez.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_contributing.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_searchio.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_searchio.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_pdb.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_introduction.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_entrez.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_learning.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_appendix.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_appendix.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_popgen.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seqio.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_testing.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_advanced.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_popgen.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_pdb.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_learning.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seqio.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_contributing.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cluster.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_motifs.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_motifs.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_blast.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phylo.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_advanced.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_introduction.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_graphics.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phylo.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_blast.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cluster.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_align.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_graphics.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_testing.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_kegg.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_align.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/plugins creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/plugins/linux creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/cache creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/mcoffee creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/methods creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.config creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.config/matplotlib creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache/matplotlib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/home/.cache/matplotlib/fontlist-v330.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache/matplotlib byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_index.py to _index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Applications.py to Applications.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Record.py to Record.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/_index.py to _index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Seq.py to Seq.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/kNN.py to kNN.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/REST.py to REST.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/bgzf.py to bgzf.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/meme.py to meme.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/matrix.py to matrix.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/pfm.py to pfm.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/xms.py to xms.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/alignace.py to alignace.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/minimal.py to minimal.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/transfac.py to transfac.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/mast.py to mast.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Des.py to Des.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Model.py to Model.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/vectors.py to vectors.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Atom.py to Atom.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SASA.py to SASA.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Selection.py to Selection.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Chain.py to Chain.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Entity.py to Entity.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Dice.py to Dice.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Structure.py to Structure.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Residue.py to Residue.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/Record.py to Record.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_io.py to _io.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/dnal.py to dnal.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/psw.py to psw.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/utils.py to utils.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Record.py to Record.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/pairwise2.py to pairwise2.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/File.py to File.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/Loader.py to Loader.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_geo.py to test_geo.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Wise.py to test_Wise.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Ace.py to test_Ace.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_seq.py to test_seq.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_File.py to test_File.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_kNN.py to test_kNN.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NMR.py to test_NMR.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Medline.py to test_Medline.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/run_tests.py to run_tests.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phd.py to test_Phd.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_motifs.py to test_motifs.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PQR.py to test_PQR.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Application.py to test_Application.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/requires_wise.py to requires_wise.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_align.py to test_align.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_prosite.py to test_prosite.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Compass.py to test_Compass.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Affy.py to test_Affy.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_translate.py to test_translate.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/requires_internet.py to requires_internet.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_psw.py to test_psw.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/getgene.py to getgene.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-310.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-310.pyc running install_egg_info Copying biopython.egg-info to /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:232: /usr/bin/python3 setup.py install --root /<>/python-biopython-1.79+dfsg/debian/tmp running install running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/FastaIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/BlatIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/_utils.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/query.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/hit.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/_base.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Prodoc.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Enzyme.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Prosite.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/LogisticRegression.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Phd.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Ace.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/Ace.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/Phd.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/lcc.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.h -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/Applications.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/NCBIXML.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/Record.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/NCBIWWW.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Applications.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/Interfaces.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/AceIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/IgIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PdbIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/TabIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/FastaIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PhdIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/NibIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/GckIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PirIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/AbiIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SffIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SwissIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/QualityIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_twoBitIO.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/TwoBitIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/StandardData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nodes.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Nexus.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Trees.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Nodes.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/StandardData.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nexus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Trees.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/File.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/Seq.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/bgzf.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/SeqFeature.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/SeqRecord.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/pairwise2.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/NaiveBayes.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/MarkovModel.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/_utils.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/kNN.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/LogisticRegression.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/MaxEntropy.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/pm_fitting.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/phen_micro.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/AlignInfo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__pycache__/AlignInfo.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/HOXD70 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/TRANS -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Prank.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/Applications.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/Primer3.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Primer3.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Applications.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/_utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__pycache__/KeyWList.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/kNN.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqFeature.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__pycache__/REST.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/REST.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/bgzf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MafIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MauveIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/Interfaces.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/NexusIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/FastaIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MsfIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/meme.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/pfm.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/minimal.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/transfac.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/meme.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/alignace.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/thresholds.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/xms.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/clusterbuster.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/mast.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/matrix.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/matrix.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/pfm.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/xms.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/alignace.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/minimal.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/thresholds.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__pycache__/db.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/transfac.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/mast.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Residues.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Des.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Dom.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Cla.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Residues.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Des.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Raf.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Hie.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Cla.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Raf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Hie.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Dom.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/display.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/format.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/common.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/chars.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/Parser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/Parser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmcifio.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Entity.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/internal_coords.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/NeighborSearch.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/HSExposure.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Dice.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/SASA.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/FragmentMapper.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Selection.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PICIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Polypeptide.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/mmcifio.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PSEA.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/NACCESS.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ResidueDepth.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Superimposer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/StructureAlignment.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Structure.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBList.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Atom.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/SCADIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Model.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/MMCIFParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ic_data.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/DSSP.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/StructureBuilder.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ic_rebuild.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Chain.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBExceptions.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/vectors.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Residue.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Model.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PSEA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_rebuild.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/vectors.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PICIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Atom.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/internal_coords.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/SASA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Selection.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Chain.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_data.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Entity.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/HSExposure.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/SCADIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Dice.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Superimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NACCESS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Structure.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Residue.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Application/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Application/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/NOEtools.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/xpktools.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/xpktools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/NOEtools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/CelFile.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__pycache__/CelFile.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__pycache__/Record.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/GOA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__pycache__/GOA.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/MaxEntropy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2module.c -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonseq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/codonseq.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/chisq.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/codonalignment.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/chisq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/BaseTree.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_io.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NeXML.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NexusIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/Newick.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/Consensus.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/CDAOIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NewickIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_utils.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/CDAO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/PhyloXML.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Newick.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Consensus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_io.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/psw.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/dnal.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/dnal.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/psw.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqRecord.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/FreqTable.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/Scanner.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/Record.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/utils.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/utils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/pairwise2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/PrintFormat.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/Restriction.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Comparative.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/KGML_vis.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/Comparative.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/Distribution.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Distribution.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/Trainer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/Utilities.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/MarkovModel.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Trainer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Utilities.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NaiveBayes.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/File.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/MarkovModel.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/SCOPData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/IUPACData.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/CodonTable.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/SCOPData.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/IUPACData.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/CodonTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/BioSeq.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/DBUtils.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/BioSeqDatabase.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/Loader.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__init__.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/Loader.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/DBUtils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result3.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result1.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_cellosaurus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_yn00.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/test.fsa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/fake.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/310.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3730.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/empty.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/no_smpl1.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3100.ab1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/test_data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/output.best.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Seq_objs.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SVDSuperimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_PhylipIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/Human_contigs.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/RepBase23.02.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/TRBG361.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/AAA03323.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/A04195.imgt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/embl_with_0_line.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/AE017046.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/101ma_no_coords.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/SC10H5.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/patents.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/xx_after_co.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/U87107.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/epo_prt_selection.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DS830848.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited2.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/location_wrap.embl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_NibIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Compass/comtest1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Compass/comtest2 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align_substitution_matrices.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Emboss.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_geo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Hie.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Insdc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Restriction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_codonalign.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Wise.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_legacy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_littleendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_bigendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_bigendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_littleendian.nib -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/msf/DOA_prot.msf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/msf/W_prot.msf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_sqlite3.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_PdbIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/search_tests_common.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIFIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Ace.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise_alignment_map.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqUtils.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_qblast.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Dice.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Gck copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Gck/artificial.gck -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Gck copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SeqXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_write.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Eca.1.2425.data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Mdm_partial.data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Hs.2.data -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Fasttree_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_test.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/cnksr3.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/length_coords_mismatch.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/humor.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/unfinished.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/invalid.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/corrupt.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/wrong_version.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/bundle_without_target.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/bug2453.maf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Cluster.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2_no_C.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Tutorial.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/cyano.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/wnts.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_actin.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mirna.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_short_result.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_wait.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_pcr.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mirna.tab -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/wnts.xml.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_orchid.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_short_empty.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_disco.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_UniGene.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TogoWS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/horses.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/reference_dna2.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/interlaced2.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/random.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/sequential2.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/sequential.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/interlaced.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/reference_dna.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/hennigian.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/horses.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Dom.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KeyWList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ColorSpiral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TwoBit/sequence.long.2bit -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TwoBit/sequence.bigendian.2bit -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TwoBit/sequence.littleendian.2bit -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TwoBit/sequence.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TwoBit copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_fasta_m10.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/out.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SwissProt.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test.new -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/bats.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test_Nexus_input.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/int_node_labels.nwk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/codonposset.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/pairwise2_testCases.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/biosql.ini.appveyor -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_QCPSuperimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Uniprot.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PQR.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NaiveBayes.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_psw.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_SMCRA.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_write.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Hie.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Mafft_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Astral.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_internet.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Tutorial.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/common_BioSQL_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_motifs.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TreeConstruction.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SubsMat.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqFeature.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2_no_C.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Probcons_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Affy.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_nographics.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Seq_objs.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Des.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CodonTable.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SffIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Dom.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_DSSP.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Scop.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Residues.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsChromosome.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Dialign_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ProtParam.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMGeneral.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ColorSpiral.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/seq_tests_common.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Muscle_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDBList.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_PDBParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_networkx.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Cluster.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniGene.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prodoc.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_wise.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_kNN.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/search_tests_common.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqRecord.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Nexus.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Chi2.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Fasttree_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Medline.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_seq.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Enzyme.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqUtils.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype_fit.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_NACCESS.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_write.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_yn00.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EmbossPrimer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Gck.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SwissProt.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_translate.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KeyWList.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_align_substitution_matrices.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SVDSuperimposer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Ace.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_parser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_samtools_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GenBank.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PhyloXML.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Emboss.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_cellosaurus.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BWA_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_codeml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_codonalign.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TCoffee_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_graphics_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Wise.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_baseml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_MarkovModel.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsDistribution.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMCasino.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsGeneral.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniProt_GOA.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NMR.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phd.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Application.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/common_BioSQL.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_legacy.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Exposure.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Raf.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise_aligner.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ExPASy.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Blast_Record.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Prank_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prosite.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Disordered.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EMBL_unittest.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_NeXML.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBIXML.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_PDBIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_convert.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_KDTree.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBI_qblast.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_geo.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GenomeDiagram.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Restriction.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Compass.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignInfo.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Consensus.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_graphics.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_SASA.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_MafIO_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_QCPSuperimposer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/pairwise2_testCases.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phyml_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBITextParser.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_model.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Pathway.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Cla.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_align.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Clustalw_tool.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_vectors.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_internal_coords.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_features.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_RCSBFormats.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_LogisticRegression.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_File.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_CDAO.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Superimposer.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_motifs_online.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Uniprot.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CAPS.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Dice.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_bgzf.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TogoWS.cpython-39.pyc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsBitmaps.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plate_2.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlate_2.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/BadPlate.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlate.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plates.csv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlates.csv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plate.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/species.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/bad.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/longnames.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/alignment.phylip -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/species.tree -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad2.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/bad_results.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/gen_results.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PQR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PQR/1A80.pqr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PQR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_parse_pdb_header.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_seq.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Saf copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Saf/saf1.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Saf creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/cor6_6.db -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_matplotlib.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/ecoli.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/bsubtilis.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/cow.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/cow.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/bsubtilis.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/pig.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/ecoli.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/pig.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/hg38.chrom.sizes -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/FSSP/1cnv.fssp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqRecord.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_File.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_454 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd2 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd1 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_solexa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_RCSBFormats.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_CDAO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Scop.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_SASA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_kNN.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Residues.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ClustalOmega_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/water2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/short.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/alignret.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/needle.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/needle_asis.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/water.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_forward.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_reverse.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/bac_find.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/no_oligo.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_pair.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_simple.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/internal_oligo.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK_full.primer3 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/bac_find.psearch -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/promals3d.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/hedgehog.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/cw02.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/odd_consensus.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/opuntia.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/temp horses.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/protein.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GenBank.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Raf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_write.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDBList.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIFParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EmbossPrimer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prodoc.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBITextParser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/output.best.fas -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/bt001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/EDD_RAT.dat -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/seqs.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0CK95.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.rdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/F2CXE6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp010 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp011 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp013 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni002 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/R5HY77.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp016 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/Q13639.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.list -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp003 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp006 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0A186.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp009 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P97881.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp007 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P84001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.gff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/keywlist2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp012 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/O23729.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/F2CXE6.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/keywlist.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/Q13639.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp002 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni003 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp008 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp015 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp005 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P60137.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeuralNetwork/enolase.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeuralNetwork/repeat.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NMR.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phyml_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/InterProScan/test_001.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Medline.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001422.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/multi.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802x.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802lc.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/run_tests.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_AbiIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/.coveragerc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_SMCRA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_NeXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/contig1.ace -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/consed_sample.ace -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/seq.cap.ace -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phd.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SffIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Enzyme.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.4letter -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.irregular -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00253.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map03070.png -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00010.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map00950.rea -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.new -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/compound.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/compound.irregular -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/gene.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko01100.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko03070.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map01100.png -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-d.dna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/pFA-KanMX4.dna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-e.dna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaoauTyA creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaooyo09 copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phenotype.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise_aligner.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_vectors.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/paired.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/triple_sff.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/greek.sff -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/alignace.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/abdb.xms -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/fourrows.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/REB1.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/Arnt.sites -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.adh.classic.oops.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/fourcolumns.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/transfac.dat -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/MA0056.1.transfac -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/minimal_test.meme -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/SRF.pfm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_graphics.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_DSSP.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_model.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/raftest.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/testDom.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Chi2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Pathway.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/seq_tests_common.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KEGG_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_baseml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CodonTable.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_codeml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_001.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_002.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_003.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_004.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_003.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_35_002.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/mirna.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_35_001.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_35_002.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_005.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_001.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_002.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_004.pslx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_005.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PQR.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Clustalw_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Dialign_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/journals.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/efetch_schemas.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/espell.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/protein.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary9.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/ncbi_mim.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/biosample.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch6.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch7.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/taxonomy.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink8.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed3.html -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink5.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost3.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch4.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CDAO copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/CDAO/test.cdao -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CDAO creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/ExtendedPhylip copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/ExtendedPhylip/primates.phyx -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/ExtendedPhylip creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_refresh.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam2.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam2.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_header.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam1.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam1_sorted.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam1.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/readme.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_header.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam2_sorted.bam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.sam -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_QualityIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Xdna.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/3JQH.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG_noheader.dssp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2n0n_M1.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4ZHL.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/d256ba_.ent -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/lib_10_z_5.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/occupancy.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Wilke_RASA.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1MOM_min.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/alignment_file.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/a_structure.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.rsa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.xyzr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1SSU_mod.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1AS5.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4CUP.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2OFG.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4ZHL.mmtf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1LCD.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1SSU_mod.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2XHE.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2XHE.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.asa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/a_structure.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Sander_RASA.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1LCD.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4Q9R_min.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.dssp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Miller_RASA.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/ions.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/header.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/disordered.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A7G.cif -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.pdb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4CUP.mmtf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.mmtf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_tab.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_escape.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_93.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example_dos.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_short_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_diff_ids.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/zero_length.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_null.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_faked.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_faked.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_spaces.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/tricky.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example_dos.fastq.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_tabs.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_faked.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_example.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_double_seq.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_long_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.qual -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_del.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_double_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_no_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_vtab.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_space.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsDistribution.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_tab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Disordered.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Application.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BWA_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/bamii.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/foki.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/pvuii.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/crei.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/crei.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/foki.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/bamii.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/pvuii.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.htm -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_LogisticRegression.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_StructureAlignment.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa.backbone -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple_short.xmfa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_samtools_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Superimposer.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-a.xdna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-b.xdna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-c.xprt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Mafft_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PhyloXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Muscle_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NMR/noed.xpk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NMR/out_example.xpk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MafIO_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Polypeptide.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Affy/affy_v3_example.CEL -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Affy/affy_v4_example.CEL -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_family.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSE16.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_series.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM700.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM691.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM645.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_platform.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM804.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_dual.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/allx.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_features.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees-uris.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/timetree.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_taxa.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/characters.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_types.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/treebase-record.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/phenoscape.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/sets.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/taxa.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/nexml.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/edgelabels.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/tolweb.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/goa_human_sample.gpi -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/goa_yeast.gaf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/requires_wise.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_UniProt_GOA.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/strict_refs.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/nj_min.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/majority_ref.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/upgma.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/pars3.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/trees.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/msa.phy -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/test.log -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/adam_refs.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/nj.tre -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsGeneral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro1.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_id -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl1.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_nucl.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl4.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl2.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/drosophilla.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro5.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro2.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl3.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro3.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_pro.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro4.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/adh.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl5.fa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SubsMat.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Prank_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/dups.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/lupine.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/aster.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output010.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output015.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/phlox.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output012.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output008.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output002.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/sweetpea.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/flowers.pro.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output004.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output009.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/elderberry.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/rosemary.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output003.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f002 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output014.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/rose.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/aster_no_wrap.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f003 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f001 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/tc_out.msf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output013.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output011.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output001.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output016.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output005.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/wisteria.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/lavender.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output006.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output007.m10 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/loveliesbleeding.pro -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/fa01 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/centaurea.nu -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_nographics.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Stockholm/funny.sth -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Stockholm/simple.sth -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Probcons_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/DMA_nuc.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/DMB_prot.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/B_nuc.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/Cw_prot.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/clustalw.pir -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_graphics_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00488.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00165.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00159.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00432.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00546.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00107.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ProtParam.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_HMMCasino.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_networkx.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_convert.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_bgzf.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Nexus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_NACCESS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/aaDistrib.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/protein_count.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/redAADistrib.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/protein_freq.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Des.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TCoffee_tool.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/EU851978_output.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_version.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_product.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NT_019265.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/protein_refseq.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/EU851978.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/pBAD30.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/no_end_marker.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/tsa_acropora.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/blank_seq.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/protein_refseq2.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/iro.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/KF527485_output.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/1MRR_A.gp -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.tsv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/tls_KDHP01000000.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_structured_comment.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/HM138502.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/one_of.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/negative_location.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/origin_line.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/DS830848.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.ffn -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/noref.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/gbvrl1_start.seq -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/GU949562.1.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/KF527485.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/cor6_6.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/HM138502_output.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/pri1.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/extra_keywords.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/no_origin_no_end.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/arab1.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.fna -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_accession.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/dbsource_wrap.gb -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NaiveBayes.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL_online.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TreeConstruction.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ExPASy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KEGG.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Consensus.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GenomeDiagram.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prosite.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/square_test.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_original.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.eps -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_transparency.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_colors.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/multi_bar.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_1.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/random_organism.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/spiral_test.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.svg -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/simple_bar.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_7.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.svg -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.svg -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_original.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_transparency.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_widths.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phenotype_fit.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EMBL_unittest.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsChromosome.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_MauveIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/biosql.ini.sample -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Compass.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CAPS.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/rna_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/global_species_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/dna_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/corrupt_example2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/corrupt_example1.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/protein_example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_internal_coords.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Exposure.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SnapGene.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Blast_Record.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Astral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_TwoBitIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_HMMGeneral.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Affy.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_KDTree.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_translate.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta4.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta9.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta8.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta6.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta2.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta3.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta7.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/bcl_2.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/distribution.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/apaf.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/example.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/made_up.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqFeature.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lactate.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/proline.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/valine.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lipoprotein.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/requires_internet.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Cla.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Gck.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/README.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_FastaIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_FragmentMapper.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_psw.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBIXML.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_EmbossIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_ClustalIO.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez_parser.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignInfo.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2space.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2line.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo2.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3space.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/README -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/big.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo3.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3line.gen -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/PF05371_seed.sth -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/m_cold.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/my_blast.xml -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/www_blast.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ACT_example.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/clustal_run.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/beta.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/nmr/noed.xpk -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/nmr/simplepredict.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/simple.dnd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.dnd -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/alpha.faa -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.gz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/fasta_dictionary.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.aln -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/getgene.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/fasta_iterator.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.fasta -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ec_5.4.2.2.txt -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/Plates.csv -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/swissprot.py -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/my_blat.psl -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_kegg.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_entrez.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_contributing.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_searchio.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_searchio.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_pdb.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_introduction.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_entrez.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_learning.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_appendix.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_appendix.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_popgen.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seqio.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_testing.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_advanced.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_popgen.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_pdb.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_learning.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seqio.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_contributing.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cluster.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_motifs.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_motifs.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_blast.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phylo.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_advanced.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_introduction.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_graphics.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phylo.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_blast.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cluster.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_align.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_graphics.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_testing.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_kegg.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_align.tex -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/plugins creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/plugins/linux creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/cache creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/mcoffee creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/methods creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/matplotlib creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache creating /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache/matplotlib copying /<>/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/home/.cache/matplotlib/fontlist-v330.json -> /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache/matplotlib byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_index.py to _index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Applications.py to Applications.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Record.py to Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/_index.py to _index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Seq.py to Seq.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/_utils.py to _utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/kNN.py to kNN.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/REST.py to REST.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/bgzf.py to bgzf.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/meme.py to meme.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/matrix.py to matrix.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/pfm.py to pfm.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/xms.py to xms.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/alignace.py to alignace.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/minimal.py to minimal.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/transfac.py to transfac.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/mast.py to mast.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Des.py to Des.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Model.py to Model.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/vectors.py to vectors.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Atom.py to Atom.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/SASA.py to SASA.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Selection.py to Selection.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Chain.py to Chain.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Entity.py to Entity.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Dice.py to Dice.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Structure.py to Structure.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Residue.py to Residue.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/Record.py to Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_io.py to _io.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/dnal.py to dnal.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/psw.py to psw.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/utils.py to utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Record.py to Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/pairwise2.py to pairwise2.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/File.py to File.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/Loader.py to Loader.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_geo.py to test_geo.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Wise.py to test_Wise.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Ace.py to test_Ace.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_seq.py to test_seq.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_File.py to test_File.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_kNN.py to test_kNN.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NMR.py to test_NMR.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Medline.py to test_Medline.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/run_tests.py to run_tests.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phd.py to test_Phd.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs.py to test_motifs.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PQR.py to test_PQR.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Application.py to test_Application.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_wise.py to requires_wise.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align.py to test_align.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prosite.py to test_prosite.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Compass.py to test_Compass.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Affy.py to test_Affy.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_translate.py to test_translate.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_internet.py to requires_internet.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_psw.py to test_psw.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/getgene.py to getgene.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-39.pyc byte-compiling /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-39.pyc running install_egg_info Copying biopython.egg-info to /<>/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.79.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.20.0), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/<>/python-biopython-1.79+dfsg' dh_install -a -O--buildsystem=pybuild install -d debian/python3-biopython//usr/lib/python3.10/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.10/dist-packages/Bio debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info debian/python3-biopython//usr/lib/python3.10/dist-packages/ install -d debian/python3-biopython//usr/lib/python3.9/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.9/dist-packages/Bio debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.79.egg-info debian/python3-biopython//usr/lib/python3.9/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/.debhelper/generated/python3-biopython-sql dh_installdocs -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 5.20211022.1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9,3.10 (default=3.9) D: dh_python3 debhelper:129: skipping package: python-biopython-doc D: dh_python3 debhelper:157: source=python-biopython, binary packages=['python3-biopython'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.9/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.10/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:265: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.79.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9'), Version('3.10')}, 'ext_no_version': set()} D: dh_python3 depends:118: generating dependencies for package python3-biopython D: dh_python3 pydist:142: trying to find dependency for numpy (python=None) D: dh_python3 depends:282: D={'python3 (>= 3.9~)', 'python3-numpy', 'python3 (<< 3.11)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-biopython chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/<>/python-biopython-1.79+dfsg' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>/python-biopython-1.79+dfsg' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/<>/python-biopython-1.79+dfsg' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/s390x-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/s390x-linux-gnu/python3-biopython.debug dh_strip -a -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 982a889dc448020e3f9bd19337db8dda31635ea6 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/98/2a889dc448020e3f9bd19337db8dda31635ea6.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/98/2a889dc448020e3f9bd19337db8dda31635ea6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripOizhdI debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripOizhdI cat '/tmp/fh1idrM9Xz/stripOizhdI' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripOizhdI debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/98/2a889dc448020e3f9bd19337db8dda31635ea6.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyMsn8y3 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyMsn8y3 cat '/tmp/fh1idrM9Xz/objcopyMsn8y3' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyMsn8y3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 f80295cf07f42cbe96688438da80ff2a360d0670 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f8 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f8/0295cf07f42cbe96688438da80ff2a360d0670.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f8/0295cf07f42cbe96688438da80ff2a360d0670.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripXTWbVQ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripXTWbVQ cat '/tmp/fh1idrM9Xz/stripXTWbVQ' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripXTWbVQ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f8/0295cf07f42cbe96688438da80ff2a360d0670.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopy7TfaBe chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopy7TfaBe cat '/tmp/fh1idrM9Xz/objcopy7TfaBe' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopy7TfaBe debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 bac6e94203c37c2917568f6b4a658390dd1432c0 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ba/c6e94203c37c2917568f6b4a658390dd1432c0.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ba/c6e94203c37c2917568f6b4a658390dd1432c0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripGWNIC_ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripGWNIC_ cat '/tmp/fh1idrM9Xz/stripGWNIC_' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripGWNIC_ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ba/c6e94203c37c2917568f6b4a658390dd1432c0.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopytPZ3vW chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopytPZ3vW cat '/tmp/fh1idrM9Xz/objcopytPZ3vW' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopytPZ3vW debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 39ba79a242634ed8b354b32cb2765bda9dd48e7e install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/39/ba79a242634ed8b354b32cb2765bda9dd48e7e.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/39/ba79a242634ed8b354b32cb2765bda9dd48e7e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/strippmID18 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/strippmID18 cat '/tmp/fh1idrM9Xz/strippmID18' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/strippmID18 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/39/ba79a242634ed8b354b32cb2765bda9dd48e7e.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyN1sVcl chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyN1sVcl cat '/tmp/fh1idrM9Xz/objcopyN1sVcl' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyN1sVcl debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b5a5f388e26c11251cace42357a36e98e0a4c206 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b5/a5f388e26c11251cace42357a36e98e0a4c206.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b5/a5f388e26c11251cace42357a36e98e0a4c206.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripLamHJJ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripLamHJJ cat '/tmp/fh1idrM9Xz/stripLamHJJ' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripLamHJJ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b5/a5f388e26c11251cace42357a36e98e0a4c206.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyNRh0J_ chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyNRh0J_ cat '/tmp/fh1idrM9Xz/objcopyNRh0J_' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyNRh0J_ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d9ee342f33963d86cb70c231137ef313745c88e7 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9/ee342f33963d86cb70c231137ef313745c88e7.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9/ee342f33963d86cb70c231137ef313745c88e7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripyPMafn debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripyPMafn cat '/tmp/fh1idrM9Xz/stripyPMafn' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripyPMafn debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9/ee342f33963d86cb70c231137ef313745c88e7.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopye_5MxG chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopye_5MxG cat '/tmp/fh1idrM9Xz/objcopye_5MxG' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopye_5MxG debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b375ef3c9a86abdfb52d1f3a1a30b5cf42d38b42 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3/75ef3c9a86abdfb52d1f3a1a30b5cf42d38b42.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3/75ef3c9a86abdfb52d1f3a1a30b5cf42d38b42.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripBuXVtY debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripBuXVtY cat '/tmp/fh1idrM9Xz/stripBuXVtY' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripBuXVtY debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3/75ef3c9a86abdfb52d1f3a1a30b5cf42d38b42.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyabAzCE chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyabAzCE cat '/tmp/fh1idrM9Xz/objcopyabAzCE' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyabAzCE debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d222662119dab25a82f0b176cf5804d66e9fb7b4 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2/22662119dab25a82f0b176cf5804d66e9fb7b4.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2/22662119dab25a82f0b176cf5804d66e9fb7b4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/strip8jQsn0 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/strip8jQsn0 cat '/tmp/fh1idrM9Xz/strip8jQsn0' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/strip8jQsn0 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2/22662119dab25a82f0b176cf5804d66e9fb7b4.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopy_2RAit chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopy_2RAit cat '/tmp/fh1idrM9Xz/objcopy_2RAit' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopy_2RAit debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6b5a1bf3cfcb1d5746b4d70b5f9a2916128f9b1f install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b/5a1bf3cfcb1d5746b4d70b5f9a2916128f9b1f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b/5a1bf3cfcb1d5746b4d70b5f9a2916128f9b1f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/striptSk0yI debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/striptSk0yI cat '/tmp/fh1idrM9Xz/striptSk0yI' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/striptSk0yI debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b/5a1bf3cfcb1d5746b4d70b5f9a2916128f9b1f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyQ2aDY9 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyQ2aDY9 cat '/tmp/fh1idrM9Xz/objcopyQ2aDY9' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyQ2aDY9 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 83cc7f7c8ec1ad1d4697fbe175857ced1b1a96db install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83/cc7f7c8ec1ad1d4697fbe175857ced1b1a96db.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83/cc7f7c8ec1ad1d4697fbe175857ced1b1a96db.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripg2yBXT debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripg2yBXT cat '/tmp/fh1idrM9Xz/stripg2yBXT' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripg2yBXT debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83/cc7f7c8ec1ad1d4697fbe175857ced1b1a96db.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyxzA4fp chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyxzA4fp cat '/tmp/fh1idrM9Xz/objcopyxzA4fp' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyxzA4fp debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f3843d3935c143a36036180450ae351fa1a3e738 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f3/843d3935c143a36036180450ae351fa1a3e738.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f3/843d3935c143a36036180450ae351fa1a3e738.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/strip2Rbwme debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/strip2Rbwme cat '/tmp/fh1idrM9Xz/strip2Rbwme' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/strip2Rbwme debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f3/843d3935c143a36036180450ae351fa1a3e738.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopytZwdtC chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopytZwdtC cat '/tmp/fh1idrM9Xz/objcopytZwdtC' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopytZwdtC debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 c6ecce62defefbbae3f4d00a0e5b3097693a1bae install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6/ecce62defefbbae3f4d00a0e5b3097693a1bae.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6/ecce62defefbbae3f4d00a0e5b3097693a1bae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripyq0WNj debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripyq0WNj cat '/tmp/fh1idrM9Xz/stripyq0WNj' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripyq0WNj debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6/ecce62defefbbae3f4d00a0e5b3097693a1bae.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyLJZXvy chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyLJZXvy cat '/tmp/fh1idrM9Xz/objcopyLJZXvy' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyLJZXvy debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 7143fc7d5a731bcaa611aef666d177badb7ed14d install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71/43fc7d5a731bcaa611aef666d177badb7ed14d.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71/43fc7d5a731bcaa611aef666d177badb7ed14d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripBcazpQ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripBcazpQ cat '/tmp/fh1idrM9Xz/stripBcazpQ' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripBcazpQ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71/43fc7d5a731bcaa611aef666d177badb7ed14d.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopydTWFcn chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopydTWFcn cat '/tmp/fh1idrM9Xz/objcopydTWFcn' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopydTWFcn debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 22b60d9fae41628803f23a8cabfbf6149a8615a7 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/22 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/22/b60d9fae41628803f23a8cabfbf6149a8615a7.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/22/b60d9fae41628803f23a8cabfbf6149a8615a7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/strip4dayLV debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/strip4dayLV cat '/tmp/fh1idrM9Xz/strip4dayLV' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/strip4dayLV debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/22/b60d9fae41628803f23a8cabfbf6149a8615a7.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyibofhG chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyibofhG cat '/tmp/fh1idrM9Xz/objcopyibofhG' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyibofhG debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 4db296706b4bf848bbce0a9361a89319c723cd4d install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4d/b296706b4bf848bbce0a9361a89319c723cd4d.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4d/b296706b4bf848bbce0a9361a89319c723cd4d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripHbvWh2 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripHbvWh2 cat '/tmp/fh1idrM9Xz/stripHbvWh2' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripHbvWh2 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4d/b296706b4bf848bbce0a9361a89319c723cd4d.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopy5thtUk chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopy5thtUk cat '/tmp/fh1idrM9Xz/objcopy5thtUk' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopy5thtUk debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ca94e67e28d01e37d817066983127ea7df36c86d install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ca objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ca/94e67e28d01e37d817066983127ea7df36c86d.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ca/94e67e28d01e37d817066983127ea7df36c86d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/fh1idrM9Xz/stripYfaKJh debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/stripYfaKJh cat '/tmp/fh1idrM9Xz/stripYfaKJh' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/stripYfaKJh debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ca/94e67e28d01e37d817066983127ea7df36c86d.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyTaWDDh chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so /tmp/fh1idrM9Xz/objcopyTaWDDh cat '/tmp/fh1idrM9Xz/objcopyTaWDDh' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so' chmod --reference /tmp/fh1idrM9Xz/objcopyTaWDDh debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -a -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -a -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so dh_installdeb -a -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm dh_gencontrol -a -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=22b60d9fae41628803f23a8cabfbf6149a8615a7 39ba79a242634ed8b354b32cb2765bda9dd48e7e 4db296706b4bf848bbce0a9361a89319c723cd4d 6b5a1bf3cfcb1d5746b4d70b5f9a2916128f9b1f 7143fc7d5a731bcaa611aef666d177badb7ed14d 83cc7f7c8ec1ad1d4697fbe175857ced1b1a96db 982a889dc448020e3f9bd19337db8dda31635ea6 b375ef3c9a86abdfb52d1f3a1a30b5cf42d38b42 b5a5f388e26c11251cace42357a36e98e0a4c206 bac6e94203c37c2917568f6b4a658390dd1432c0 c6ecce62defefbbae3f4d00a0e5b3097693a1bae ca94e67e28d01e37d817066983127ea7df36c86d d222662119dab25a82f0b176cf5804d66e9fb7b4 d9ee342f33963d86cb70c231137ef313745c88e7 f3843d3935c143a36036180450ae351fa1a3e738 f80295cf07f42cbe96688438da80ff2a360d0670" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. install -d debian/.debhelper/scratch-space/build-python3-biopython dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root debian/.debhelper/scratch-space/build-python3-biopython /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing python3-biopython (in debian/python3-biopython); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython-dbgsym (in debian/.debhelper/python3-biopython/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/python3-biopython/DEBIAN/control, package python3-biopython, directory debian/python3-biopython pkgstripfiles: Truncating usr/share/doc/python3-biopython/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.79+dfsg-1_s390x.deb'. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control, package python3-biopython-dbgsym, directory debian/.debhelper/python3-biopython/dbgsym-root dpkg-deb: building package 'python3-biopython-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.79+dfsg-1_s390x.deb'. Renaming python3-biopython-dbgsym_1.79+dfsg-1_s390x.deb to python3-biopython-dbgsym_1.79+dfsg-1_s390x.ddeb mv debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.79\+dfsg-1_s390x.deb ../python3-biopython-dbgsym_1.79\+dfsg-1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../python-biopython_1.79+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-26T06:21:44Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-biopython_1.79+dfsg-1_s390x.changes: ------------------------------------------- Format: 1.8 Date: Fri, 22 Oct 2021 18:10:48 +0200 Source: python-biopython Binary: python3-biopython Built-For-Profiles: noudeb Architecture: s390x Version: 1.79+dfsg-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: python3-biopython - Python3 library for bioinformatics Changes: python-biopython (1.79+dfsg-1) unstable; urgency=medium . * Migrate from Experimental to Unstable. * Mark spelling.patch as not needing forward. It seems that the file being package might not exists in upcoming Biopython versions anymore. * adjust-test_GraphicsBitmaps.patch: forwarded upstream. * d/control: breaks ncbi-acc-download (<< 0.2.7-2~) Checksums-Sha1: e1cd059927455b74701c9294dce818fc748337bd 12576 python-biopython_1.79+dfsg-1_s390x.buildinfo 91c1991bccf86cc6bcab35323aecd491116b00b8 421540 python3-biopython-dbgsym_1.79+dfsg-1_s390x.ddeb 25c8f6e9a666ad63f82886f7ab4d60e4d964fae3 1463476 python3-biopython_1.79+dfsg-1_s390x.deb Checksums-Sha256: 6025189a7a3e86c391fbac133eb2cc27265cc269705a9affa9e8875b7e5af410 12576 python-biopython_1.79+dfsg-1_s390x.buildinfo d881666f3d747305cea83ae937678bb27d1ddebd74797d2881d080b1d87017c7 421540 python3-biopython-dbgsym_1.79+dfsg-1_s390x.ddeb 1908a93f7b1dc718d1f5d378f67b319439230ca6617490a1a021c7d357b8a422 1463476 python3-biopython_1.79+dfsg-1_s390x.deb Files: 8d828c95c3ae221ecfad7511892d4d27 12576 python optional python-biopython_1.79+dfsg-1_s390x.buildinfo 0a7db1af2861269e1ab931b2c75f07d2 421540 debug optional python3-biopython-dbgsym_1.79+dfsg-1_s390x.ddeb 9529e585d64dcbf3f1ff530fe04f928d 1463476 python optional python3-biopython_1.79+dfsg-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-biopython Binary: python3-biopython python3-biopython-dbgsym Architecture: s390x Version: 1.79+dfsg-1 Checksums-Md5: 0a7db1af2861269e1ab931b2c75f07d2 421540 python3-biopython-dbgsym_1.79+dfsg-1_s390x.ddeb 9529e585d64dcbf3f1ff530fe04f928d 1463476 python3-biopython_1.79+dfsg-1_s390x.deb Checksums-Sha1: 91c1991bccf86cc6bcab35323aecd491116b00b8 421540 python3-biopython-dbgsym_1.79+dfsg-1_s390x.ddeb 25c8f6e9a666ad63f82886f7ab4d60e4d964fae3 1463476 python3-biopython_1.79+dfsg-1_s390x.deb Checksums-Sha256: d881666f3d747305cea83ae937678bb27d1ddebd74797d2881d080b1d87017c7 421540 python3-biopython-dbgsym_1.79+dfsg-1_s390x.ddeb 1908a93f7b1dc718d1f5d378f67b319439230ca6617490a1a021c7d357b8a422 1463476 python3-biopython_1.79+dfsg-1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Tue, 26 Oct 2021 06:21:44 +0000 Build-Path: /<>/python-biopython-1.79+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu1), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), binutils-s390x-linux-gnu (= 2.37-7ubuntu1), bsdextrautils (= 2.36.1-8ubuntu2), bsdutils (= 1:2.36.1-8ubuntu2), build-essential (= 12.9ubuntu2), bwa (= 0.7.17-6), bzip2 (= 1.0.8-4ubuntu4), clustalo (= 1.2.4-7), clustalw (= 2.1+lgpl-7), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-10ubuntu1), dash (= 0.5.11+git20210120+802ebd4-2), debconf (= 1.5.78), debhelper (= 13.3.4ubuntu2), debianutils (= 5.5-1), debugedit (= 1:5.0-0ubuntu2), dh-autoreconf (= 20), dh-python (= 5.20211022.1), dh-strip-nondeterminism (= 1.12.0-2), dialign (= 2.2.1-11), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dssp (= 4.0.0-2), dwz (= 0.14-1build1), emboss (= 6.6.0+dfsg-9ubuntu1), emboss-data (= 6.6.0+dfsg-9ubuntu1), emboss-lib (= 6.6.0+dfsg-9ubuntu1), fasttree (= 2.1.11-2), file (= 1:5.39-3build1), findutils (= 4.8.0-1ubuntu2), flex (= 2.6.4-8build1), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-lmodern (= 2.004.5-6.1), fonts-lyx (= 2.3.6-1), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-10ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-10ubuntu1), gcc-11-base (= 11.2.0-10ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), ghostscript (= 9.54.0~dfsg1-0ubuntu2), grep (= 3.7-0ubuntu1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hevea (= 2.35-1), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libargtable2-0 (= 13-1.1), libasan6 (= 11.2.0-10ubuntu1), libatomic1 (= 11.2.0-10ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libavahi-client3 (= 0.8-5ubuntu4), libavahi-common-data (= 0.8-5ubuntu4), libavahi-common3 (= 0.8-5ubuntu4), libbinutils (= 2.37-7ubuntu1), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.36.1-8ubuntu2), libboost-iostreams1.74.0 (= 1.74.0-8ubuntu8), libboost-program-options1.74.0 (= 1.74.0-8ubuntu8), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-10ubuntu1), libcifpp1 (= 1.0.1-3), libcom-err2 (= 1.46.3-1ubuntu3), libcommons-logging-java (= 1.2-2), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.18-4ubuntu2), libcrypt1 (= 1:4.4.18-4ubuntu2), libctf-nobfd0 (= 2.37-7ubuntu1), libctf0 (= 2.37-7ubuntu1), libcups2 (= 2.3.3op2-7ubuntu2), libcurl3-gnutls (= 7.74.0-1.3ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdbus-1-3 (= 1.12.20-2ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.3.4ubuntu2), libdeflate0 (= 1.7-2ubuntu2), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.185-2), libedit2 (= 3.1-20210910-1), libelf1 (= 0.185-2), libexpat1 (= 2.4.1-3), libexpat1-dev (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.0-2), libfontbox-java (= 1:1.8.16-2), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-10ubuntu1), libgcc-s1 (= 11.2.0-10ubuntu1), libgcrypt20 (= 1.8.7-5ubuntu2), libgd3 (= 2.3.0-2ubuntu1), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran5 (= 11.2.0-10ubuntu1), libglib2.0-0 (= 2.70.0-3), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.1-5ubuntu1), libgomp1 (= 11.2.0-10ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgs9 (= 9.54.0~dfsg1-0ubuntu2), libgs9-common (= 9.54.0~dfsg1-0ubuntu2), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhogweed6 (= 3.7.3-1build1), libhpdf-2.3.0 (= 2.3.0+dfsg-1build1), libhts3 (= 1.13+ds-2), libhtscodecs2 (= 1.1.1-3), libice6 (= 2:1.0.10-1build1), libicu67 (= 67.1-7ubuntu1), libidn11 (= 1.33-3build1), libidn2-0 (= 2.3.2-2), libijs-0.35 (= 0.35-15build1), libimagequant0 (= 2.12.2-1.1build1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-10ubuntu1), libjbig0 (= 2.1-3.1build2), libjbig2dec0 (= 0.19-3build1), libjpeg-turbo8 (= 2.0.6-0ubuntu3), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-jquery-ui (= 1.12.1+dfsg-8), libjs-sphinxdoc (= 4.2.0-5), libjs-underscore (= 1.9.1~dfsg-4), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkpathsea6 (= 2021.20210626.59705-1), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack3 (= 3.9.0-3ubuntu3), liblbfgsb0 (= 3.0+dfsg.3-9), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblmdb0 (= 0.9.24-1build1), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.39-3build1), libmagic1 (= 1:5.39-3build1), libmbedcrypto3 (= 2.16.9-0.1ubuntu1), libmbedtls12 (= 2.16.9-0.1ubuntu1), libmbedx509-0 (= 2.16.9-0.1ubuntu1), libmd0 (= 1.0.4-1), libmount1 (= 2.36.1-8ubuntu2), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libmysqlclient21 (= 8.0.27-0ubuntu0.21.10.1), libncurses6 (= 6.2+20210905-1), libncursesw6 (= 6.2+20210905-1), libnetpbm10 (= 2:10.0-15.4), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libopenjp2-7 (= 2.4.0-3), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.3.1-5ubuntu11), libpam-modules-bin (= 1.3.1-5ubuntu11), libpam-runtime (= 1.3.1-5ubuntu11), libpam0g (= 1.3.1-5ubuntu11), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build4), libpdfbox-java (= 1:1.8.16-2), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.3-1build1), libpixman-1-0 (= 0.40.0-1build3), libpng16-16 (= 1.6.37-3build4), libpq5 (= 14.0-1), libpsl5 (= 0.21.0-1.2build1), libptexenc1 (= 2021.20210626.59705-1), libpython3-all-dev (= 3.9.4-1ubuntu2), libpython3-dev (= 3.9.4-1ubuntu2), libpython3-stdlib (= 3.9.4-1ubuntu2), libpython3.10 (= 3.10.0-3), libpython3.10-dev (= 3.10.0-3), libpython3.10-minimal (= 3.10.0-3), libpython3.10-stdlib (= 3.10.0-3), libpython3.9 (= 3.9.7-4), libpython3.9-dev (= 3.9.7-4), libpython3.9-minimal (= 3.9.7-4), libpython3.9-stdlib (= 3.9.7-4), libraqm0 (= 0.7.0-4), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg-2.1build1), libsasl2-modules-db (= 2.1.27+dfsg-2.1build1), libseccomp2 (= 2.5.1-1ubuntu2), libselinux1 (= 3.1-3build3), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.36.1-8ubuntu2), libsqlite3-0 (= 3.36.0-2), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-10ubuntu1), libstdc++6 (= 11.2.0-10ubuntu1), libsub-override-perl (= 0.09-2), libsynctex2 (= 2021.20210626.59705-1), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.17.0-2), libteckit0 (= 2.5.10+ds1-3), libtexlua53 (= 2021.20210626.59705-1), libtiff5 (= 4.3.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libubsan1 (= 11.2.0-10ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8ubuntu2), libwebp6 (= 0.6.1-2.1build1), libwebpdemux2 (= 0.6.1-2.1build1), libwebpmux3 (= 0.6.1-2.1build1), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxaw7 (= 2:1.0.13-1.1build1), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-0ubuntu4), libxi6 (= 2:1.8-1), libxml2 (= 2.9.12+dfsg-5), libxmu6 (= 2:1.1.3-0ubuntu2), libxpm4 (= 1:3.5.12-1build1), libxrender1 (= 1:0.9.10-1build3), libxt6 (= 1:1.2.0-1build1), libzstd1 (= 1.4.8+dfsg-3), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 5.13.0-19.19), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), mafft (= 7.487-1), mailcap (= 3.70ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), media-types (= 4.0.0), mime-support (= 3.66), muscle (= 1:3.8.1551-2build1), mysql-common (= 5.8+1.0.5ubuntu3), ncbi-blast+ (= 2.11.0+ds-1), ncbi-data (= 6.1.20170106+dfsg1-9), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), netpbm (= 2:10.0-15.4), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), phylip (= 1:3.697+dfsg-2), po-debconf (= 1.0.21+nmu1), poppler-data (= 0.4.11-1), prank (= 0.0.170427+dfsg-3), preview-latex-style (= 12.2-1ubuntu1), probcons (= 1.12-14), python-matplotlib-data (= 3.3.4-2), python3 (= 3.9.4-1ubuntu2), python3-all (= 3.9.4-1ubuntu2), python3-all-dev (= 3.9.4-1ubuntu2), python3-cycler (= 0.10.0-3), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.9.4-1ubuntu2), python3-distutils (= 3.9.7-1), python3-isodate (= 0.6.0-2), python3-kiwisolver (= 1.3.2-1), python3-lib2to3 (= 3.9.7-1), python3-linecache2 (= 1.0.0-4ubuntu2), python3-matplotlib (= 3.3.4-2), python3-minimal (= 3.9.4-1ubuntu2), python3-mmtf (= 1.1.2-3), python3-msgpack (= 1.0.2-2), python3-mysqldb (= 1.4.6-1), python3-networkx (= 2.4-4ubuntu1), python3-numpy (= 1:1.20.2-1ubuntu1), python3-pil (= 8.3.2-1), python3-pkg-resources (= 58.2.0-1), python3-psycopg2 (= 2.9.1-1), python3-pygments (= 2.7.1+dfsg-2.1), python3-pyparsing (= 2.4.7-1), python3-rdflib (= 5.0.0-1.1build1), python3-renderpm (= 3.6.1-1), python3-reportlab (= 3.6.1-1), python3-reportlab-accel (= 3.6.1-1), python3-scipy (= 1.7.1-1ubuntu1), python3-setuptools (= 58.2.0-1), python3-six (= 1.16.0-2), python3-traceback2 (= 1.4.0-6), python3-unittest2 (= 1.1.0-7), python3.10 (= 3.10.0-3), python3.10-dev (= 3.10.0-3), python3.10-minimal (= 3.10.0-3), python3.9 (= 3.9.7-4), python3.9-dev (= 3.9.7-4), python3.9-minimal (= 3.9.7-4), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), samtools (= 1.13-4), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), t-coffee (= 13.41.0.28bdc39+dfsg-4), t1utils (= 1.41-4build1), tar (= 1.34+dfsg-1build2), tex-common (= 6.17), texlive-base (= 2021.20210921-1), texlive-binaries (= 2021.20210626.59705-1), texlive-fonts-recommended (= 2021.20210921-1), texlive-latex-base (= 2021.20210921-1), texlive-latex-extra (= 2021.20210921-1), texlive-latex-recommended (= 2021.20210921-1), texlive-pictures (= 2021.20210921-1), ttf-bitstream-vera (= 1.10-8.1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), util-linux (= 2.36.1-8ubuntu2), wise (= 2.4.1-23), wise-data (= 2.4.1-23), x11-common (= 1:7.7+23ubuntu1), xdg-utils (= 1.1.3-2ubuntu2), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634919048" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-biopython_1.79+dfsg-1_s390x.deb --------------------------------------- new Debian package, version 2.0. size 1463476 bytes: control archive=16924 bytes. 1567 bytes, 27 lines control 58660 bytes, 621 lines md5sums 271 bytes, 12 lines * postinst #!/bin/sh 420 bytes, 12 lines * prerm #!/bin/sh Package: python3-biopython Source: python-biopython Version: 1.79+dfsg-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 9665 Depends: python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3 (<< 3.11), python3 (>= 3.9~), python3:any, libc6 (>= 2.4), python3-renderpm, python3-reportlab Recommends: python-biopython-doc (= 1.79+dfsg-1), ncbi-blast+ (>= 2.10.1-3) Suggests: python3-tk, bwa, clustalo, clustalw, dialign, dssp (>= 4.0.0), emboss, fasttree, mafft, muscle, phylip, phyml, prank, probcons, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-scipy, raxml, samtools, t-coffee, wise, w3-dtd-mathml Breaks: cnvkit (<< 0.9.7-1~), ncbi-acc-download (<< 0.2.7-2~) Section: python Priority: optional Homepage: https://biopython.org Description: Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. drwxr-xr-x root/root 0 2021-10-22 16:10 ./ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Affy/ -rw-r--r-- root/root 19568 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Affy/CelFile.py -rw-r--r-- root/root 296 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Affy/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Align/ -rw-r--r-- root/root 22457 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/AlignInfo.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Align/Applications/ -rw-r--r-- root/root 10012 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_ClustalOmega.py -rw-r--r-- root/root 20228 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Clustalw.py -rw-r--r-- root/root 10101 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Dialign.py -rw-r--r-- root/root 3444 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_MSAProbs.py -rw-r--r-- root/root 19884 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Mafft.py -rw-r--r-- root/root 35418 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Muscle.py -rw-r--r-- root/root 10544 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Prank.py -rw-r--r-- root/root 5238 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Probcons.py -rw-r--r-- root/root 4588 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_TCoffee.py -rw-r--r-- root/root 1193 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/Applications/__init__.py -rw-r--r-- root/root 85572 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/__init__.py -rw-r--r-- root/root 236030 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.c -rw-r--r-- root/root 158240 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 158240 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-s390x-linux-gnu.so drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/ -rw-r--r-- root/root 17605 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/ -rw-r--r-- root/root 2387 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22 -rw-r--r-- root/root 2387 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6 -rw-r--r-- root/root 2387 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74 -rw-r--r-- root/root 2122 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45 -rw-r--r-- root/root 2122 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50 -rw-r--r-- root/root 2122 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62 -rw-r--r-- root/root 2124 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80 -rw-r--r-- root/root 2122 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90 -rw-r--r-- root/root 2451 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF -rw-r--r-- root/root 1120 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG -rw-r--r-- root/root 2380 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC -rw-r--r-- root/root 2351 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992 -rw-r--r-- root/root 275 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70 -rw-r--r-- root/root 2818 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON -rw-r--r-- root/root 2413 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES -rw-r--r-- root/root 1542 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN -rw-r--r-- root/root 1092 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN -rw-r--r-- root/root 2859 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78 -rw-r--r-- root/root 1171 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4 -rw-r--r-- root/root 2068 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250 -rw-r--r-- root/root 2666 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30 -rw-r--r-- root/root 2666 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70 -rw-r--r-- root/root 1581 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO -rw-r--r-- root/root 2456 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER -rw-r--r-- root/root 25459 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER -rw-r--r-- root/root 1543 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR -rw-r--r-- root/root 402 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/AlignIO/ -rw-r--r-- root/root 12069 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/ClustalIO.py -rw-r--r-- root/root 8748 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/EmbossIO.py -rw-r--r-- root/root 13357 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/FastaIO.py -rw-r--r-- root/root 5624 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/Interfaces.py -rw-r--r-- root/root 33936 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/MafIO.py -rw-r--r-- root/root 13403 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/MauveIO.py -rw-r--r-- root/root 14180 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/MsfIO.py -rw-r--r-- root/root 6024 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/NexusIO.py -rw-r--r-- root/root 17145 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/PhylipIO.py -rw-r--r-- root/root 26639 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/StockholmIO.py -rw-r--r-- root/root 18757 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/AlignIO/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Alphabet/ -rw-r--r-- root/root 1200 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Alphabet/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Application/ -rw-r--r-- root/root 32132 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Application/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Blast/ -rw-r--r-- root/root 67019 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Blast/Applications.py -rw-r--r-- root/root 13271 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Blast/NCBIWWW.py -rw-r--r-- root/root 33453 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py -rw-r--r-- root/root 3929 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Blast/ParseBlastTable.py -rw-r--r-- root/root 15857 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Blast/Record.py -rw-r--r-- root/root 350 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Blast/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/CAPS/ -rw-r--r-- root/root 4041 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/CAPS/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Cluster/ -rw-r--r-- root/root 50805 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Cluster/__init__.py -rw-r--r-- root/root 113280 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 113280 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-s390x-linux-gnu.so -rw-r--r-- root/root 169203 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Cluster/cluster.c -rw-r--r-- root/root 4135 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Cluster/cluster.h -rw-r--r-- root/root 77865 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Cluster/clustermodule.c drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Compass/ -rw-r--r-- root/root 6964 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Compass/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Data/ -rw-r--r-- root/root 50385 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Data/CodonTable.py -rw-r--r-- root/root 9248 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Data/IUPACData.py -rw-r--r-- root/root 17337 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Data/SCOPData.py -rw-r--r-- root/root 353 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Data/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Emboss/ -rw-r--r-- root/root 49091 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Emboss/Applications.py -rw-r--r-- root/root 5593 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Emboss/Primer3.py -rw-r--r-- root/root 2529 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Emboss/PrimerSearch.py -rw-r--r-- root/root 355 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Emboss/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Entrez/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/ -rw-r--r-- root/root 660 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_0.dtd -rw-r--r-- root/root 33675 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -rw-r--r-- root/root 660 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_1.dtd -rw-r--r-- root/root 33691 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -rw-r--r-- root/root 660 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_2.dtd -rw-r--r-- root/root 36007 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -rw-r--r-- root/root 660 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_3.dtd -rw-r--r-- root/root 41304 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -rw-r--r-- root/root 660 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_4.dtd -rw-r--r-- root/root 41537 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -rw-r--r-- root/root 792 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/EMBL_General.dtd -rw-r--r-- root/root 2871 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/EMBL_General.mod.dtd -rw-r--r-- root/root 807 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/GenBank_General.dtd -rw-r--r-- root/root 1743 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/GenBank_General.mod.dtd -rw-r--r-- root/root 3500 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/HomoloGene.dtd -rw-r--r-- root/root 6460 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/HomoloGene.mod.dtd -rw-r--r-- root/root 671 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -rw-r--r-- root/root 14705 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -rw-r--r-- root/root 3893 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB.dtd -rw-r--r-- root/root 9382 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB.mod.dtd -rw-r--r-- root/root 3908 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -rw-r--r-- root/root 17213 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -rw-r--r-- root/root 3902 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Features.dtd -rw-r--r-- root/root 28680 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -rw-r--r-- root/root 3910 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -rw-r--r-- root/root 25075 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -rw-r--r-- root/root 665 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Access.dtd -rw-r--r-- root/root 1221 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -rw-r--r-- root/root 785 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Biblio.dtd -rw-r--r-- root/root 15918 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -rw-r--r-- root/root 925 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioSource.dtd -rw-r--r-- root/root 4641 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -rw-r--r-- root/root 671 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioTree.dtd -rw-r--r-- root/root 2444 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -rw-r--r-- root/root 3740 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Blast4.dtd -rw-r--r-- root/root 39597 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -rw-r--r-- root/root 3507 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -rw-r--r-- root/root 4281 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -rw-r--r-- root/root 692 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -rw-r--r-- root/root 6579 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -rw-r--r-- root/root 4347 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cdd.dtd -rw-r--r-- root/root 28292 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -rw-r--r-- root/root 4005 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -rw-r--r-- root/root 16758 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -rw-r--r-- root/root 410 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -rw-r--r-- root/root 671 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -rw-r--r-- root/root 21922 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -rw-r--r-- root/root 3525 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -rw-r--r-- root/root 10316 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -rw-r--r-- root/root 671 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -rw-r--r-- root/root 2358 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -rw-r--r-- root/root 659 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -rw-r--r-- root/root 11502 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -rw-r--r-- root/root 776 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Gene.dtd -rw-r--r-- root/root 2381 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -rw-r--r-- root/root 671 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_General.dtd -rw-r--r-- root/root 8215 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_General.mod.dtd -rw-r--r-- root/root 3629 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -rw-r--r-- root/root 5733 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -rw-r--r-- root/root 3757 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -rw-r--r-- root/root 23205 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -rw-r--r-- root/root 1378 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -rw-r--r-- root/root 6931 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -rw-r--r-- root/root 907 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medlars.dtd -rw-r--r-- root/root 1617 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -rw-r--r-- root/root 907 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medline.dtd -rw-r--r-- root/root 5757 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -rw-r--r-- root/root 647 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mim.dtd -rw-r--r-- root/root 8395 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -rw-r--r-- root/root 4461 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mime.dtd -rw-r--r-- root/root 7270 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -rw-r--r-- root/root 665 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -rw-r--r-- root/root 3131 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -rw-r--r-- root/root 796 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Organism.dtd -rw-r--r-- root/root 5250 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -rw-r--r-- root/root 1519 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -rw-r--r-- root/root 31800 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -rw-r--r-- root/root 1155 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -rw-r--r-- root/root 43623 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -rw-r--r-- root/root 3736 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Project.dtd -rw-r--r-- root/root 3769 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -rw-r--r-- root/root 791 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Protein.dtd -rw-r--r-- root/root 1791 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -rw-r--r-- root/root 1003 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Pub.dtd -rw-r--r-- root/root 2700 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -rw-r--r-- root/root 1021 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PubMed.dtd -rw-r--r-- root/root 1698 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -rw-r--r-- root/root 3383 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_RNA.dtd -rw-r--r-- root/root 3379 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -rw-r--r-- root/root 3495 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Remap.dtd -rw-r--r-- root/root 4064 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -rw-r--r-- root/root 781 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Rsite.dtd -rw-r--r-- root/root 1044 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -rw-r--r-- root/root 3629 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -rw-r--r-- root/root 19503 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -rw-r--r-- root/root 671 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -rw-r--r-- root/root 4231 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -rw-r--r-- root/root 3389 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -rw-r--r-- root/root 9912 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -rw-r--r-- root/root 3634 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -rw-r--r-- root/root 11475 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -rw-r--r-- root/root 3389 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -rw-r--r-- root/root 15026 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -rw-r--r-- root/root 3387 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -rw-r--r-- root/root 19204 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -rw-r--r-- root/root 3385 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -rw-r--r-- root/root 7383 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -rw-r--r-- root/root 3385 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqres.dtd -rw-r--r-- root/root 3149 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -rw-r--r-- root/root 3501 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqset.dtd -rw-r--r-- root/root 3479 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -rw-r--r-- root/root 3384 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Sequence.dtd -rw-r--r-- root/root 26293 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -rw-r--r-- root/root 3617 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Submit.dtd -rw-r--r-- root/root 4130 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -rw-r--r-- root/root 3379 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Systems.dtd -rw-r--r-- root/root 656 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TSeq.dtd -rw-r--r-- root/root 1660 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -rw-r--r-- root/root 1138 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TxInit.dtd -rw-r--r-- root/root 4625 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -rw-r--r-- root/root 3389 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Variation.dtd -rw-r--r-- root/root 27155 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -rw-r--r-- root/root 7893 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_all.dtd -rw-r--r-- root/root 625 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NSE.dtd -rw-r--r-- root/root 26853 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NSE.mod.dtd -rw-r--r-- root/root 3470 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/OMSSA.dtd -rw-r--r-- root/root 34917 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/OMSSA.mod.dtd -rw-r--r-- root/root 787 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PDB_General.dtd -rw-r--r-- root/root 1815 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PDB_General.mod.dtd -rw-r--r-- root/root 3387 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PIR_General.dtd -rw-r--r-- root/root 2076 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PIR_General.mod.dtd -rw-r--r-- root/root 667 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PRF_General.dtd -rw-r--r-- root/root 1535 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PRF_General.mod.dtd -rw-r--r-- root/root 3386 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/SP_General.dtd -rw-r--r-- root/root 2375 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/SP_General.mod.dtd -rw-r--r-- root/root 17329 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/XHTMLtablesetup.ent -rw-r--r-- root/root 51298 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivearticle.dtd -rw-r--r-- root/root 8304 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-classes.ent -rw-r--r-- root/root 16646 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-mixes.ent -rw-r--r-- root/root 38921 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-models.ent -rw-r--r-- root/root 6412 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-modules.ent -rw-r--r-- root/root 98004 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/articlemeta.ent -rw-r--r-- root/root 15090 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/backmatter.ent -rw-r--r-- root/root 2645 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_100301.dtd -rw-r--r-- root/root 2645 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_110101.dtd -rw-r--r-- root/root 2645 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_120101.dtd -rw-r--r-- root/root 2756 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_130101.dtd -rw-r--r-- root/root 2756 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_140101.dtd -rw-r--r-- root/root 2756 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_150101.dtd -rw-r--r-- root/root 21412 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/chars.ent -rw-r--r-- root/root 152388 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/common.ent -rw-r--r-- root/root 33182 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/default-classes.ent -rw-r--r-- root/root 19402 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/default-mixes.ent -rw-r--r-- root/root 82067 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/display.ent -rw-r--r-- root/root 1655 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eInfo_020511.dtd -rw-r--r-- root/root 2299 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eLink_090910.dtd -rw-r--r-- root/root 2447 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eLink_101123.dtd -rw-r--r-- root/root 520 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/ePost_020511.dtd -rw-r--r-- root/root 2392 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eSearch_020511.dtd -rw-r--r-- root/root 736 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eSpell.dtd -rw-r--r-- root/root 602 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eSummary_041029.dtd -rw-r--r-- root/root 851 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/egquery.dtd -rw-r--r-- root/root 1715 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/einfo.dtd -rw-r--r-- root/root 466 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/elink_020122.dtd -rw-r--r-- root/root 3337 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/esearch.dtd -rw-r--r-- root/root 602 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/esummary-v1.dtd -rw-r--r-- root/root 22746 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/format.ent -rw-r--r-- root/root 9849 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/htmltable.dtd -rw-r--r-- root/root 11589 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsa.ent -rw-r--r-- root/root 9556 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsb.ent -rw-r--r-- root/root 2254 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsc.ent -rw-r--r-- root/root 7945 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsn.ent -rw-r--r-- root/root 4432 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamso.ent -rw-r--r-- root/root 14133 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsr.ent -rw-r--r-- root/root 3507 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isobox.ent -rw-r--r-- root/root 5257 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isocyr1.ent -rw-r--r-- root/root 2457 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isocyr2.ent -rw-r--r-- root/root 1473 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isodia.ent -rw-r--r-- root/root 4102 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk1.ent -rw-r--r-- root/root 2389 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk2.ent -rw-r--r-- root/root 3699 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk3.ent -rw-r--r-- root/root 3591 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk4.ent -rw-r--r-- root/root 5199 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isolat1.ent -rw-r--r-- root/root 8865 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isolat2.ent -rw-r--r-- root/root 4478 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isomfrk.ent -rw-r--r-- root/root 2522 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isomopf.ent -rw-r--r-- root/root 4557 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isomscr.ent -rw-r--r-- root/root 5816 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isonum.ent -rw-r--r-- root/root 6594 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isopub.ent -rw-r--r-- root/root 12399 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isotech.ent -rw-r--r-- root/root 18988 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/journalmeta.ent -rw-r--r-- root/root 28360 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/link.ent -rw-r--r-- root/root 25663 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/list.ent -rw-r--r-- root/root 18334 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/math.ent -rw-r--r-- root/root 6820 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml-in-pubmed.mod lrwxrwxrwx root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd -rw-r--r-- root/root 12255 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml3-qname1.mod -rw-r--r-- root/root 42407 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml3.dtd -rw-r--r-- root/root 10452 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathmlsetup.ent -rw-r--r-- root/root 37695 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mmlalias.ent -rw-r--r-- root/root 7776 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mmlextra.ent -rw-r--r-- root/root 21313 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/modules.ent -rw-r--r-- root/root 4465 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -rw-r--r-- root/root 12369 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -rw-r--r-- root/root 5839 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcommon_011101.dtd -rw-r--r-- root/root 7946 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcommon_080101.dtd -rw-r--r-- root/root 8638 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcommon_090101.dtd -rw-r--r-- root/root 2053 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedline_011101.dtd -rw-r--r-- root/root 3017 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedline_080101.dtd -rw-r--r-- root/root 3195 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedline_090101.dtd -rw-r--r-- root/root 6760 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -rw-r--r-- root/root 5001 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -rw-r--r-- root/root 5262 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -rw-r--r-- root/root 9322 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -rw-r--r-- root/root 9618 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -rw-r--r-- root/root 9308 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -rw-r--r-- root/root 8829 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -rw-r--r-- root/root 8995 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -rw-r--r-- root/root 9033 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -rw-r--r-- root/root 9112 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -rw-r--r-- root/root 8947 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -rw-r--r-- root/root 5672 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmserials_080101.dtd -rw-r--r-- root/root 6703 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmserials_100101.dtd -rw-r--r-- root/root 3185 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -rw-r--r-- root/root 3317 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -rw-r--r-- root/root 9656 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/notat.ent -rw-r--r-- root/root 23807 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/para.ent -rw-r--r-- root/root 15750 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/phrase.ent -rw-r--r-- root/root 25142 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pmc-1.dtd -rw-r--r-- root/root 2714 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_020114.dtd -rw-r--r-- root/root 3045 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_080101.dtd -rw-r--r-- root/root 3059 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_090101.dtd -rw-r--r-- root/root 3126 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_100101.dtd -rw-r--r-- root/root 3434 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_100301.dtd -rw-r--r-- root/root 3434 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_110101.dtd -rw-r--r-- root/root 3434 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_120101.dtd -rw-r--r-- root/root 3434 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_130101.dtd -rw-r--r-- root/root 3445 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_130501.dtd -rw-r--r-- root/root 3445 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_140101.dtd -rw-r--r-- root/root 3445 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_150101.dtd -rw-r--r-- root/root 13062 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_180101.dtd -rw-r--r-- root/root 13869 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_180601.dtd -rw-r--r-- root/root 14576 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_190101.dtd -rw-r--r-- root/root 40015 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/references.ent -rw-r--r-- root/root 13173 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/section.ent -rw-r--r-- root/root 4003 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/taxon.dtd -rw-r--r-- root/root 13595 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/xmlspecchars.ent -rw-r--r-- root/root 40328 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/Parser.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Entrez/XSDs/ -rw-r--r-- root/root 3536 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/XSDs/IPGReportSet.xsd -rw-r--r-- root/root 26288 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Entrez/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/ExPASy/ -rw-r--r-- root/root 4455 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/ExPASy/Enzyme.py -rw-r--r-- root/root 5015 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/ExPASy/Prodoc.py -rw-r--r-- root/root 11665 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/ExPASy/Prosite.py -rw-r--r-- root/root 4865 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/ExPASy/ScanProsite.py -rw-r--r-- root/root 4110 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/ExPASy/__init__.py -rw-r--r-- root/root 5598 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/ExPASy/cellosaurus.py -rw-r--r-- root/root 24009 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/File.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/GenBank/ -rw-r--r-- root/root 23306 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/GenBank/Record.py -rw-r--r-- root/root 86102 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/GenBank/Scanner.py -rw-r--r-- root/root 64599 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/GenBank/__init__.py -rw-r--r-- root/root 2271 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/GenBank/utils.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Geo/ -rw-r--r-- root/root 3067 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Geo/Record.py -rw-r--r-- root/root 2176 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Geo/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Graphics/ -rw-r--r-- root/root 31451 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/BasicChromosome.py -rw-r--r-- root/root 7365 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/ColorSpiral.py -rw-r--r-- root/root 6472 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/Comparative.py -rw-r--r-- root/root 6860 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/DisplayRepresentation.py -rw-r--r-- root/root 9377 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/Distribution.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/ -rw-r--r-- root/root 18533 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -rw-r--r-- root/root 68565 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -rw-r--r-- root/root 9678 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py -rw-r--r-- root/root 3309 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py -rw-r--r-- root/root 15639 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py -rw-r--r-- root/root 8059 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py -rw-r--r-- root/root 7812 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py -rw-r--r-- root/root 6945 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py -rw-r--r-- root/root 5650 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py -rw-r--r-- root/root 63242 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -rw-r--r-- root/root 11679 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py -rw-r--r-- root/root 1172 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py -rw-r--r-- root/root 17646 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/KGML_vis.py -rw-r--r-- root/root 3234 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Graphics/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/HMM/ -rw-r--r-- root/root 12526 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/HMM/DynamicProgramming.py -rw-r--r-- root/root 26602 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/HMM/MarkovModel.py -rw-r--r-- root/root 16574 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/HMM/Trainer.py -rw-r--r-- root/root 2176 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/HMM/Utilities.py -rw-r--r-- root/root 283 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/HMM/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/KEGG/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/KEGG/Compound/ -rw-r--r-- root/root 5319 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/Compound/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/KEGG/Enzyme/ -rw-r--r-- root/root 10930 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/Enzyme/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/KEGG/Gene/ -rw-r--r-- root/root 4216 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/Gene/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/ -rw-r--r-- root/root 6197 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/KGML_parser.py -rw-r--r-- root/root 27698 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/KGML_pathway.py -rw-r--r-- root/root 516 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/KEGG/Map/ -rw-r--r-- root/root 1642 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/Map/__init__.py -rw-r--r-- root/root 10968 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/REST.py -rw-r--r-- root/root 3027 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/KEGG/__init__.py -rw-r--r-- root/root 4307 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/LogisticRegression.py -rw-r--r-- root/root 23661 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/MarkovModel.py -rw-r--r-- root/root 10888 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/MaxEntropy.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Medline/ -rw-r--r-- root/root 5913 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Medline/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/NMR/ -rw-r--r-- root/root 3353 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/NMR/NOEtools.py -rw-r--r-- root/root 332 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/NMR/__init__.py -rw-r--r-- root/root 9275 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/NMR/xpktools.py -rw-r--r-- root/root 7962 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/NaiveBayes.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Nexus/ -rw-r--r-- root/root 84576 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Nexus/Nexus.py -rw-r--r-- root/root 5745 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Nexus/Nodes.py -rw-r--r-- root/root 4006 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Nexus/StandardData.py -rw-r--r-- root/root 39979 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Nexus/Trees.py -rw-r--r-- root/root 388 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Nexus/__init__.py -rw-r--r-- root/root 3736 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Nexus/cnexus.c -rw-r--r-- root/root 6240 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 6240 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-s390x-linux-gnu.so drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/ -rw-r--r-- root/root 4083 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/AbstractPropertyMap.py -rw-r--r-- root/root 18343 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Atom.py -rw-r--r-- root/root 6663 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Chain.py -rw-r--r-- root/root 20535 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/DSSP.py -rw-r--r-- root/root 2321 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Dice.py -rw-r--r-- root/root 15258 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Entity.py -rw-r--r-- root/root 9626 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/FragmentMapper.py -rw-r--r-- root/root 11327 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/HSExposure.py -rw-r--r-- root/root 4883 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/MMCIF2Dict.py -rw-r--r-- root/root 21234 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/MMCIFParser.py -rw-r--r-- root/root 2205 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Model.py -rw-r--r-- root/root 7182 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/NACCESS.py -rw-r--r-- root/root 4423 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/NeighborSearch.py -rw-r--r-- root/root 762 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/PDBExceptions.py -rw-r--r-- root/root 13309 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/PDBIO.py -rw-r--r-- root/root 21840 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/PDBList.py -rw-r--r-- root/root 17450 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py -rw-r--r-- root/root 15502 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/PICIO.py -rw-r--r-- root/root 3030 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/PSEA.py -rw-r--r-- root/root 13987 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Polypeptide.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/ -rw-r--r-- root/root 5359 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py -rw-r--r-- root/root 9125 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.c -rw-r--r-- root/root 10336 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 10336 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-s390x-linux-gnu.so -rw-r--r-- root/root 5268 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Residue.py -rw-r--r-- root/root 21854 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/ResidueDepth.py -rw-r--r-- root/root 8333 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/SASA.py -rw-r--r-- root/root 31907 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/SCADIO.py -rw-r--r-- root/root 2528 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Selection.py -rw-r--r-- root/root 2079 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Structure.py -rw-r--r-- root/root 3182 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/StructureAlignment.py -rw-r--r-- root/root 11708 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py -rw-r--r-- root/root 1947 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/Superimposer.py -rw-r--r-- root/root 2478 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/__init__.py -rw-r--r-- root/root 15603 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/ic_data.py -rw-r--r-- root/root 13034 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/ic_rebuild.py -rw-r--r-- root/root 129910 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/internal_coords.py -rw-r--r-- root/root 42796 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/kdtrees.c -rw-r--r-- root/root 24448 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 24448 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-s390x-linux-gnu.so -rw-r--r-- root/root 15410 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/mmcifio.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/ -rw-r--r-- root/root 8949 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/DefaultParser.py -rw-r--r-- root/root 1546 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/__init__.py -rw-r--r-- root/root 10167 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/mmtfio.py -rw-r--r-- root/root 11664 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/parse_pdb_header.py -rw-r--r-- root/root 18339 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PDB/vectors.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Pathway/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/ -rw-r--r-- root/root 5869 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/Graph.py -rw-r--r-- root/root 6783 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/MultiGraph.py -rw-r--r-- root/root 575 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/__init__.py -rw-r--r-- root/root 10763 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Pathway/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Phylo/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/ -rw-r--r-- root/root 27404 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/_Fasttree.py -rw-r--r-- root/root 10846 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/_Phyml.py -rw-r--r-- root/root 18860 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/_Raxml.py -rw-r--r-- root/root 751 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/__init__.py -rw-r--r-- root/root 45412 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/BaseTree.py -rw-r--r-- root/root 1662 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/CDAO.py -rw-r--r-- root/root 16106 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py -rw-r--r-- root/root 23544 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/Consensus.py -rw-r--r-- root/root 1403 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/NeXML.py -rw-r--r-- root/root 11338 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/NeXMLIO.py -rw-r--r-- root/root 1298 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/Newick.py -rw-r--r-- root/root 12490 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/NewickIO.py -rw-r--r-- root/root 2652 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/NexusIO.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/ -rw-r--r-- root/root 325 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/__init__.py -rw-r--r-- root/root 5151 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_paml.py -rw-r--r-- root/root 11409 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_parse_baseml.py -rw-r--r-- root/root 21155 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_parse_codeml.py -rw-r--r-- root/root 6820 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_parse_yn00.py -rw-r--r-- root/root 8320 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/baseml.py -rw-r--r-- root/root 3727 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/chi2.py -rw-r--r-- root/root 8878 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/codeml.py -rw-r--r-- root/root 5743 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/yn00.py -rw-r--r-- root/root 50552 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PhyloXML.py -rw-r--r-- root/root 32759 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/PhyloXMLIO.py -rw-r--r-- root/root 43060 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/TreeConstruction.py -rw-r--r-- root/root 513 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/__init__.py -rw-r--r-- root/root 109270 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/_cdao_owl.py -rw-r--r-- root/root 2595 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/_io.py -rw-r--r-- root/root 17911 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Phylo/_utils.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PopGen/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/ -rw-r--r-- root/root 34313 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/Controller.py -rw-r--r-- root/root 7719 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/EasyController.py -rw-r--r-- root/root 11790 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/FileParser.py -rw-r--r-- root/root 3849 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py -rw-r--r-- root/root 7461 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/__init__.py -rw-r--r-- root/root 359 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/PopGen/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Restriction/ -rw-r--r-- root/root 16234 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Restriction/PrintFormat.py -rw-r--r-- root/root 85637 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Restriction/Restriction.py -rw-r--r-- root/root 439594 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Restriction/Restriction_Dictionary.py -rw-r--r-- root/root 7856 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Restriction/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SCOP/ -rw-r--r-- root/root 3924 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SCOP/Cla.py -rw-r--r-- root/root 3006 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SCOP/Des.py -rw-r--r-- root/root 2467 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SCOP/Dom.py -rw-r--r-- root/root 2966 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SCOP/Hie.py -rw-r--r-- root/root 10304 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SCOP/Raf.py -rw-r--r-- root/root 3063 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SCOP/Residues.py -rw-r--r-- root/root 32785 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SCOP/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SVDSuperimposer/ -rw-r--r-- root/root 6210 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SVDSuperimposer/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/ -rw-r--r-- root/root 23896 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/__init__.py -rw-r--r-- root/root 33766 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py -rw-r--r-- root/root 5610 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/blast_text.py -rw-r--r-- root/root 37110 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py -rw-r--r-- root/root 31231 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlatIO.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/ -rw-r--r-- root/root 12965 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py -rw-r--r-- root/root 19992 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/_base.py -rw-r--r-- root/root 4089 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -rw-r--r-- root/root 20436 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py -rw-r--r-- root/root 8244 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -rw-r--r-- root/root 25908 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/FastaIO.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/HHsuiteIO/ -rw-r--r-- root/root 639 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py -rw-r--r-- root/root 9309 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/ -rw-r--r-- root/root 20309 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/__init__.py -rw-r--r-- root/root 1482 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/_base.py -rw-r--r-- root/root 12839 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py -rw-r--r-- root/root 13956 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -rw-r--r-- root/root 12818 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py -rw-r--r-- root/root 18733 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/InterproscanIO/ -rw-r--r-- root/root 5155 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py -rw-r--r-- root/root 7455 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py -rw-r--r-- root/root 29010 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/__init__.py -rw-r--r-- root/root 1213 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_index.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/ -rw-r--r-- root/root 75041 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py -rw-r--r-- root/root 12123 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py -rw-r--r-- root/root 313 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/ -rw-r--r-- root/root 2464 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/__init__.py -rw-r--r-- root/root 2650 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/_base.py -rw-r--r-- root/root 17356 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/hit.py -rw-r--r-- root/root 48189 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/hsp.py -rw-r--r-- root/root 30434 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/query.py -rw-r--r-- root/root 5597 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SearchIO/_utils.py -rw-r--r-- root/root 111899 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Seq.py -rw-r--r-- root/root 76081 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqFeature.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SeqIO/ -rw-r--r-- root/root 26098 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/AbiIO.py -rw-r--r-- root/root 4091 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/AceIO.py -rw-r--r-- root/root 15000 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/FastaIO.py -rw-r--r-- root/root 8071 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/GckIO.py -rw-r--r-- root/root 4433 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/IgIO.py -rw-r--r-- root/root 57359 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py -rw-r--r-- root/root 14029 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/Interfaces.py -rw-r--r-- root/root 5843 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/NibIO.py -rw-r--r-- root/root 19768 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/PdbIO.py -rw-r--r-- root/root 6075 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/PhdIO.py -rw-r--r-- root/root 10304 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/PirIO.py -rw-r--r-- root/root 90189 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/QualityIO.py -rw-r--r-- root/root 27598 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/SeqXmlIO.py -rw-r--r-- root/root 55779 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/SffIO.py -rw-r--r-- root/root 9633 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/SnapGeneIO.py -rw-r--r-- root/root 6001 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/SwissIO.py -rw-r--r-- root/root 5020 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/TabIO.py -rw-r--r-- root/root 10810 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py -rw-r--r-- root/root 25529 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/UniprotIO.py -rw-r--r-- root/root 12548 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/XdnaIO.py -rw-r--r-- root/root 43749 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py -rw-r--r-- root/root 27383 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqIO/_index.py -rw-r--r-- root/root 21992 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.c -rw-r--r-- root/root 10560 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 10560 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-s390x-linux-gnu.so -rw-r--r-- root/root 54689 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqRecord.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SeqUtils/ -rw-r--r-- root/root 3513 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/CheckSum.py -rw-r--r-- root/root 6789 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/CodonUsage.py -rw-r--r-- root/root 1380 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/CodonUsageIndices.py -rw-r--r-- root/root 6474 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/IsoelectricPoint.py -rw-r--r-- root/root 45300 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/MeltingTemp.py -rw-r--r-- root/root 13364 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/ProtParam.py -rw-r--r-- root/root 18172 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/ProtParamData.py -rw-r--r-- root/root 15035 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/__init__.py -rw-r--r-- root/root 5755 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SeqUtils/lcc.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Sequencing/ -rw-r--r-- root/root 20711 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Sequencing/Ace.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/ -rw-r--r-- root/root 8588 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/_Novoalign.py -rw-r--r-- root/root 2189 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/__init__.py -rw-r--r-- root/root 28256 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/_bwa.py -rw-r--r-- root/root 36658 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/_samtools.py -rw-r--r-- root/root 5598 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Sequencing/Phd.py -rw-r--r-- root/root 530 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Sequencing/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SubsMat/ -rw-r--r-- root/root 2821 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SubsMat/FreqTable.py -rw-r--r-- root/root 174096 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SubsMat/MatrixInfo.py -rw-r--r-- root/root 20833 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SubsMat/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/SwissProt/ -rw-r--r-- root/root 3490 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SwissProt/KeyWList.py -rw-r--r-- root/root 33077 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/SwissProt/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/TogoWS/ -rw-r--r-- root/root 13951 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/TogoWS/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/UniGene/ -rw-r--r-- root/root 12811 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/UniGene/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/UniProt/ -rw-r--r-- root/root 15076 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/UniProt/GOA.py -rw-r--r-- root/root 722 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/UniProt/__init__.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/Wise/ -rw-r--r-- root/root 4701 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Wise/__init__.py -rw-r--r-- root/root 4819 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Wise/dnal.py -rw-r--r-- root/root 4608 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/Wise/psw.py -rw-r--r-- root/root 4721 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/__init__.py -rw-r--r-- root/root 2095 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/_utils.py -rw-r--r-- root/root 37532 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/bgzf.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/codonalign/ -rw-r--r-- root/root 30019 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/codonalign/__init__.py -rw-r--r-- root/root 3281 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/codonalign/chisq.py -rw-r--r-- root/root 18027 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/codonalign/codonalignment.py -rw-r--r-- root/root 47918 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/codonalign/codonseq.py -rw-r--r-- root/root 14584 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 14584 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-s390x-linux-gnu.so -rw-r--r-- root/root 16043 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/cpairwise2module.c -rw-r--r-- root/root 4295 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/kNN.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/motifs/ -rw-r--r-- root/root 20517 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/__init__.py -rw-r--r-- root/root 5800 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/_pwm.c -rw-r--r-- root/root 10592 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-s390x-linux-gnu.so -rw-r--r-- root/root 10592 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-s390x-linux-gnu.so -rw-r--r-- root/root 2107 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/alignace.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/motifs/applications/ -rw-r--r-- root/root 582 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/applications/__init__.py -rw-r--r-- root/root 10382 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/applications/_xxmotif.py -rw-r--r-- root/root 2528 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/clusterbuster.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/motifs/jaspar/ -rw-r--r-- root/root 11315 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/jaspar/__init__.py -rw-r--r-- root/root 27729 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/jaspar/db.py -rw-r--r-- root/root 4828 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/mast.py -rw-r--r-- root/root 20515 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/matrix.py -rw-r--r-- root/root 6716 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/meme.py -rw-r--r-- root/root 5767 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/minimal.py -rw-r--r-- root/root 16438 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/pfm.py -rw-r--r-- root/root 4534 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/thresholds.py -rw-r--r-- root/root 11915 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/transfac.py -rw-r--r-- root/root 3843 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/motifs/xms.py -rw-r--r-- root/root 52649 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/pairwise2.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/Bio/phenotype/ -rw-r--r-- root/root 8318 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/phenotype/__init__.py -rw-r--r-- root/root 37672 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/phenotype/phen_micro.py -rw-r--r-- root/root 4062 2021-06-01 07:11 ./usr/lib/python3/dist-packages/Bio/phenotype/pm_fitting.py drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/biopython-1.79.egg-info/ -rw-r--r-- root/root 12922 2021-10-22 16:10 ./usr/lib/python3/dist-packages/biopython-1.79.egg-info/PKG-INFO -rw-r--r-- root/root 1 2021-10-22 16:10 ./usr/lib/python3/dist-packages/biopython-1.79.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2021-10-22 16:10 ./usr/lib/python3/dist-packages/biopython-1.79.egg-info/requires.txt -rw-r--r-- root/root 11 2021-10-22 16:10 ./usr/lib/python3/dist-packages/biopython-1.79.egg-info/top_level.txt drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/share/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/share/doc/python3-biopython/ -rw-r--r-- root/root 5072 2021-06-01 07:11 ./usr/share/doc/python3-biopython/CONTRIB.rst.gz -rw-r--r-- root/root 1970 2021-06-01 07:11 ./usr/share/doc/python3-biopython/CONTRIBUTING.rst.gz -rw-r--r-- root/root 9931 2021-06-01 07:11 ./usr/share/doc/python3-biopython/DEPRECATED.rst.gz -rw-r--r-- root/root 36664 2021-06-01 07:11 ./usr/share/doc/python3-biopython/NEWS.rst.gz -rw-r--r-- root/root 273 2021-08-22 17:54 ./usr/share/doc/python3-biopython/README.Debian -rw-r--r-- root/root 1583 2021-10-22 16:10 ./usr/share/doc/python3-biopython/changelog.Debian.gz -rw-r--r-- root/root 2055 2021-10-22 16:10 ./usr/share/doc/python3-biopython/copyright drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-10-22 16:10 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 278 2021-08-22 17:54 ./usr/share/lintian/overrides/python3-biopython +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 559 Distribution: jammy-proposed Host Architecture: s390x Install-Time: 76 Job: python-biopython_1.79+dfsg-1.dsc Machine Architecture: s390x Package: python-biopython Package-Time: 636 Source-Version: 1.79+dfsg-1 Space: n/a Status: successful Version: 1.79+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-10-26T06:21:44Z Build needed 00:10:36, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22337888 Scanning for processes to kill in build PACKAGEBUILD-22337888