https://launchpad.net/ubuntu/+source/python-biopython/1.81+dfsg-3/+build/27578503 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-arm64-025 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 19 Dec 23:19:45 ntpdate[1846]: adjust time server 10.211.37.1 offset -0.000036 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578503 --image-type chroot /home/buildd/filecache-default/0aaa0d191106d33e51979a9c6a062e50b7f5b3b2 Creating target for build PACKAGEBUILD-27578503 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578503 Starting target for build PACKAGEBUILD-27578503 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578503 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27578503 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578503 Updating target for build PACKAGEBUILD-27578503 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 Packages [1394 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 Packages [14.9 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6040 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [132 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [47.3 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [440 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [190 kB] Fetched 24.2 MB in 3s (7238 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 134 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 6875 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.38-3ubuntu1 [1573 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.38-3ubuntu1 [19.4 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [201 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libgssapi-krb5-2 arm64 1.20.1-5build1 [139 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5-3 arm64 1.20.1-5build1 [347 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libk5crypto3 arm64 1.20.1-5build1 [85.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5support0 arm64 1.20.1-5build1 [33.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3 arm64 3.0.10-1ubuntu3 [1752 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc3 arm64 1.3.4+ds-1 [82.6 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl2 arm64 1.3.0-3 [40.9 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-libc-dev arm64 6.6.0-14.14 [1554 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 13.2.0-9ubuntu1 [49.5 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgprofng0 arm64 2.41.50.20231214-1ubuntu1 [766 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libctf0 arm64 2.41.50.20231214-1ubuntu1 [80.0 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libctf-nobfd0 arm64 2.41.50.20231214-1ubuntu1 [83.0 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-aarch64-linux-gnu arm64 2.41.50.20231214-1ubuntu1 [3564 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libbinutils arm64 2.41.50.20231214-1ubuntu1 [684 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-common arm64 2.41.50.20231214-1ubuntu1 [258 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 binutils arm64 2.41.50.20231214-1ubuntu1 [7762 B] Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-base arm64 13.2.0-9ubuntu1 [45.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-s1 arm64 13.2.0-9ubuntu1 [46.6 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 13.2.0-9ubuntu1 [139 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 13.2.0-9ubuntu1 [27.9 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 13.2.0-9ubuntu1 [11.6 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 13.2.0-9ubuntu1 [2751 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 13.2.0-9ubuntu1 [1185 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 13.2.0-9ubuntu1 [2630 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 13.2.0-9ubuntu1 [1090 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 13.2.0-9ubuntu1 [1243 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-9ubuntu1 [10.9 MB] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-9ubuntu1 [2317 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-9ubuntu1 [2464 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-9ubuntu1 [19.1 MB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-9ubuntu1 [9538 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++6 arm64 13.2.0-9ubuntu1 [732 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3ubuntu1 [61.6 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsframe1 arm64 2.41.50.20231214-1ubuntu1 [13.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [270 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.38-3ubuntu1 [2740 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 base-files arm64 13ubuntu5 [73.8 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.14 [89.3 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu1 [777 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 bsdutils arm64 1:2.39.2-6ubuntu1 [96.9 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 coreutils arm64 9.4-2ubuntu1 [1378 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 diffutils arm64 1:3.10-1 [174 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma5 arm64 5.4.5-0.1 [125 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libapparmor1 arm64 4.0.0~alpha2-0ubuntu7 [48.7 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit-common all 1:3.1.2-1 [5512 B] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libcap-ng0 arm64 0.8.3-3 [14.9 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit1 arm64 1:3.1.2-1 [47.0 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libblkid1 arm64 2.39.2-6ubuntu1 [121 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libkmod2 arm64 30+20230601-2ubuntu1 [49.8 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-8-0 arm64 10.42-4ubuntu1 [211 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libselinux1 arm64 3.5-1build2 [78.4 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libmount1 arm64 2.39.2-6ubuntu1 [132 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libpam0g arm64 1.5.2-9.1ubuntu1 [65.2 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libseccomp2 arm64 2.5.4-2ubuntu1 [50.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-sysv arm64 255-1ubuntu1 [11.7 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-dev all 255-1ubuntu1 [98.5 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd arm64 255-1ubuntu1 [3415 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd-shared arm64 255-1ubuntu1 [2009 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libargon2-1 arm64 0~20190702+dfsg-4 [20.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libuuid1 arm64 2.39.2-6ubuntu1 [34.3 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libcryptsetup12 arm64 2:2.6.1-5ubuntu1 [239 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libfdisk1 arm64 2.39.2-6ubuntu1 [141 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 mount arm64 2.39.2-6ubuntu1 [116 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd0 arm64 255-1ubuntu1 [419 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libudev1 arm64 255-1ubuntu1 [168 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxxhash0 arm64 0.8.2-2 [21.2 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libapt-pkg6.0 arm64 2.7.7 [893 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 tar arm64 1.34+dfsg-1.2ubuntu2 [285 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg arm64 1.22.1ubuntu5 [1385 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 grep arm64 3.11-3 [158 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 login arm64 1:4.13+dfsg1-3ubuntu1 [200 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-bin arm64 6.4+20231209-1 [185 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libperl5.36 arm64 5.36.0-10ubuntu1 [4673 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 perl arm64 5.36.0-10ubuntu1 [235 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 perl-base arm64 5.36.0-10ubuntu1 [1721 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libdb5.3 arm64 5.3.28+dfsg2-4 [718 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm6 arm64 1.23-5 [33.8 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm-compat4 arm64 1.23-5 [6302 B] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 util-linux arm64 2.39.2-6ubuntu1 [1113 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libdebconfclient0 arm64 0.271ubuntu1 [11.2 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 base-passwd arm64 3.6.3 [51.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.38-3ubuntu1 [590 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-base all 6.4+20231209-1 [25.2 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 sysvinit-utils arm64 3.08-3ubuntu1 [33.3 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt arm64 2.7.7 [1331 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt-utils arm64 2.7.7 [205 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libunistring5 arm64 1.1-2 [528 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libidn2-0 arm64 2.3.4-1build1 [65.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libffi8 arm64 3.4.4-2 [22.2 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libp11-kit0 arm64 0.25.3-2ubuntu2 [274 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libgnutls30 arm64 3.8.1-4ubuntu6 [930 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules-bin arm64 1.5.2-9.1ubuntu1 [46.7 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules arm64 1.5.2-9.1ubuntu1 [283 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 init arm64 1.66ubuntu1 [6186 B] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libsmartcols1 arm64 2.39.2-6ubuntu1 [62.9 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-runtime arm64 2.39.2-6ubuntu1 [32.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error0 arm64 1.47-3build1 [69.9 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage-common all 3.5-1build1 [9982 B] Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libsepol2 arm64 3.5-2 [289 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage2 arm64 3.5-1build1 [90.0 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libncursesw6 arm64 6.4+20231209-1 [144 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libtinfo6 arm64 6.4+20231209-1 [103 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 passwd arm64 1:4.13+dfsg1-3ubuntu1 [837 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-2ubuntu1 [56.5 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 mawk arm64 1.3.4.20231126-1 [123 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-2ubuntu1 [706 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 readline-common all 8.2-3 [56.2 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline8 arm64 8.2-3 [152 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsqlite3-0 arm64 3.44.2-1 [691 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 openssl arm64 3.0.10-1ubuntu3 [1168 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 bash-completion all 1:2.11-8 [180 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 bsdextrautils arm64 2.39.2-6ubuntu1 [71.4 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpng16-16 arm64 1.6.40-2 [183 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 xz-utils arm64 5.4.5-0.1 [268 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-2ubuntu1 [1108 B] Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-2ubuntu1 [5192 B] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-2ubuntu1 [29.0 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 44 [12.4 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libfakeroot arm64 1.32.2-1 [32.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 fakeroot arm64 1.32.2-1 [66.7 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 optipng arm64 0.7.7-3 [82.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 pinentry-curses arm64 1.2.1-3ubuntu1 [34.0 kB] Preconfiguring packages ... Fetched 105 MB in 4s (25.3 MB/s) (Reading database ... 13662 files and directories currently installed.) Preparing to unpack .../00-libnsl-dev_1.3.0-3_arm64.deb ... Unpacking libnsl-dev:arm64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../01-libc6-dev_2.38-3ubuntu1_arm64.deb ... Unpacking libc6-dev:arm64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../02-libc-dev-bin_2.38-3ubuntu1_arm64.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../03-libtirpc-common_1.3.4+ds-1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1_arm64.deb ... Unpacking libtirpc-dev:arm64 (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-5build1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../06-libkrb5-3_1.20.1-5build1_arm64.deb ... 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Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:arm64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:arm64 (1.3.0-3) ... Setting up libc6-dev:arm64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:arm64 (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27578503 arm64 noble-proposed -c chroot:build-PACKAGEBUILD-27578503 --arch=arm64 --dist=noble-proposed --nolog python-biopython_1.81+dfsg-3.dsc Initiating build PACKAGEBUILD-27578503 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos03-arm64-025.buildd +==============================================================================+ | python-biopython 1.81+dfsg-3 (arm64) Tue, 19 Dec 2023 23:20:19 +0000 | +==============================================================================+ Package: python-biopython Version: 1.81+dfsg-3 Source Version: 1.81+dfsg-3 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27578503/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-dxvcdC/resolver-R4T61d' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biopython_1.81+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-biopython-dxvcdC/python-biopython-1.81+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-dxvcdC' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-numpy, flex, python3-reportlab (>= 4.0.4-1~), hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, samtools, t-coffee, wise, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-numpy, flex, python3-reportlab (>= 4.0.4-1~), hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, samtools, t-coffee, wise, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [656 B] Get:5 copy:/<>/apt_archive ./ Packages [679 B] Fetched 2298 B in 0s (143 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-dev libboost1.83-dev libbrotli1 libbsd0 libcairo2 libcifpp-data libcifpp5 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfftw3-double3 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libhts3 libhtscodecs2 libice6 libicu74 libidn12 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc4 liblmdb0 liblqr-1-0 libltdl7 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmysqlclient21 libncurses6 libnetpbm11 libnghttp2-14 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libtiff6 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libzzip-0-13 m4 mafft man-db media-types mysql-common ncbi-blast+ ncbi-data netbase netpbm phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-brotli python3-cairo python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-freetype python3-fs python3-gast python3-isodate python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mmtf python3-mpmath python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-psycopg2 python3-pygments python3-pyparsing python3-pythran python3-rdflib python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal samtools t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6-blt2.5 ucf unicode-data wise wise-data x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo clustalx seaview dh-make flit python3-build python3-installer python3-wheel emboss-doc emboss-test embassy bison flex-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff hevea-doc imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils transfig ufraw-batch libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph1.83-dev libboost-graph-parallel1.83-dev libboost-iostreams1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi1.83-dev libboost-mpi-python1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.83-dev libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libfftw3-bin libfftw3-dev libgd-tools low-memory-monitor libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs liblcms2-utils libmagickcore-6.q16-6-extra tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk libxsimd-doc m4-doc apparmor less www-browser phylip-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra python3-doc python3-venv python-attr-doc python-cycler-doc python-lxml-doc cm-super-minimal dvipng fonts-staypuft gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils python-mpmath-doc python3-gmpy2 default-mysql-server | virtual-mysql-server python-networkx-doc python3-gdal python3-pydot python3-pygraphviz gfortran python3-pytest python-pil-doc python-ply-doc python-psycopg2-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc cwltool boxshade t-coffee-examples perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex wise-doc Recommended packages: primer3 libfl-dev curl | wget | lynx libmagickcore-6.q16-6-extra dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libheif-plugin-aomenc libheif-plugin-x265 javascript-common libldap-common gsfonts publicsuffix libsasl2-modules libltdl-dev blast2 libwww-perl lynx ruby libmail-sendmail-perl python3-bs4 python3-html5lib python3-yaml python3-olefile python3-sparqlwrapper isympy-common amap-align dialign-tx fsa kalign libsoap-lite-perl libxml-simple-perl muscle mustang poa proda tm-align lmodern dvisvgm tex-gyre tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-dev libboost1.83-dev libbrotli1 libbsd0 libcairo2 libcifpp-data libcifpp5 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfftw3-double3 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libhts3 libhtscodecs2 libice6 libicu74 libidn12 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc4 liblmdb0 liblqr-1-0 libltdl7 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmysqlclient21 libncurses6 libnetpbm11 libnghttp2-14 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libtiff6 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libzzip-0-13 m4 mafft man-db media-types mysql-common ncbi-blast+ ncbi-data netbase netpbm phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-brotli python3-cairo python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-freetype python3-fs python3-gast python3-isodate python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mmtf python3-mpmath python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-psycopg2 python3-pygments python3-pyparsing python3-pythran python3-rdflib python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal samtools sbuild-build-depends-main-dummy t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6-blt2.5 ucf unicode-data wise wise-data x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev 0 upgraded, 280 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu noble/main arm64 libdbus-1-3 arm64 1.14.10-1ubuntu1 [208 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libelf1 arm64 0.190-1 [57.1 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libfribidi0 arm64 1.0.13-3 [26.5 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pkg-resources all 68.1.2-2 [167 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pygments all 2.15.1+dfsg-1 [820 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 ucf all 3.0043+nmu1 [56.5 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic-mgc arm64 1:5.45-2 [307 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic1 arm64 1:5.45-2 [85.1 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 file arm64 1:5.45-2 [21.9 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 gettext-base arm64 0.21-14 [37.3 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libuchardet0 arm64 0.0.8-1 [75.1 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 groff-base arm64 1.23.0-3 [989 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 liblmdb0 arm64 0.9.31-1 [47.4 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses6 arm64 6.4+20231209-1 [108 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libnghttp2-14 arm64 1.58.0-1 [72.7 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpipeline1 arm64 1.5.7-1 [23.3 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpsl5 arm64 0.21.2-1build1 [57.0 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 man-db arm64 2.12.0-1 [1224 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:82 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noble-proposed/universe arm64 libcifpp-data all 5.0.7.1-3build1 [450 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libcifpp5 arm64 5.0.7.1-3build1 [867 kB] Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 dssp arm64 4.2.2-2 [659 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB] Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libhpdf-2.3.0 arm64 2.3.0+dfsg-1build1 [344 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmysqlclient21 arm64 8.0.35-1ubuntu2 [1270 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-4 [21.1 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-4 [54.5 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libldap2 arm64 2.6.6+dfsg-1~exp1ubuntu1 [191 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpq5 arm64 16.1-1build1 [136 kB] Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 emboss-lib arm64 6.6.0+dfsg-12ubuntu1 [2838 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 emboss-data all 6.6.0+dfsg-12ubuntu1 [61.0 MB] Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 emboss arm64 6.6.0+dfsg-12ubuntu1 [936 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB] Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.3.7-1 [167 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libgs-common all 10.02.1~dfsg1-0ubuntu1 [174 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libgs10-common all 10.02.1~dfsg1-0ubuntu1 [488 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libidn12 arm64 1.41-1 [56.0 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libijs-0.35 arm64 0.35-15.1 [15.1 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig2dec0 arm64 0.20-1 [62.8 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libgs10 arm64 10.02.1~dfsg1-0ubuntu1 [3752 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 ghostscript arm64 10.02.1~dfsg1-0ubuntu1 [43.4 kB] Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetpbm11 arm64 2:11.04.05-2 [109 kB] Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 netpbm arm64 2:11.04.05-2 [2082 kB] Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libkpathsea6 arm64 2023.20230311.66589-8build1 [62.6 kB] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libptexenc1 arm64 2023.20230311.66589-8build1 [40.0 kB] Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsynctex2 arm64 2023.20230311.66589-8build1 [59.1 kB] Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtexlua53-5 arm64 2023.20230311.66589-8build1 [120 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-1build2 [68.9 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libharfbuzz0b arm64 8.0.1-1build1 [457 kB] Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.11+ds1-1 [409 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8-1build1 [31.6 kB] Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] Get:167 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 texlive-binaries arm64 2023.20230311.66589-8build1 [8365 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20231207-1 [21.7 MB] Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick-6.q16 arm64 8:6.9.11.60+dfsg-1.6ubuntu1 [223 kB] Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick arm64 8:6.9.11.60+dfsg-1.6ubuntu1 [14.6 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 hevea arm64 2.36-2 [2333 kB] Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.11.0-2build1 [143 kB] Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost1.83-dev arm64 1.83.0-1ubuntu3 [10.7 MB] Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.2-4 [59.8 kB] Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build4 [59.2 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main arm64 libssh-4 arm64 0.10.5-3ubuntu1 [185 kB] Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl3-gnutls arm64 8.4.0-2ubuntu1 [322 kB] Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1-dev arm64 2.5.0-2 [123 kB] Get:184 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 13.2.0-9ubuntu1 [423 kB] Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] Get:188 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjs-sphinxdoc all 7.2.6-3 [149 kB] Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0-pthread arm64 0.3.25+ds-1 [5445 kB] Get:193 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.11.0-2build1 [2134 kB] Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] Get:195 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libmbedcrypto7 arm64 2.28.5-1 [204 kB] Get:196 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libmbedx509-1 arm64 2.28.5-1 [46.7 kB] Get:197 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libmbedtls14 arm64 2.28.5-1 [81.2 kB] Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0 arm64 0.3.25+ds-1 [6166 B] Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-pthread-dev arm64 0.3.25+ds-1 [3683 kB] Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-dev arm64 0.3.25+ds-1 [19.4 kB] Get:201 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11 arm64 3.11.7-2 [2167 kB] Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] Get:203 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-dev arm64 3.11.7-2 [5009 kB] Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3-dev arm64 3.11.4-5ubuntu1 [9822 B] Get:205 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-stdlib arm64 3.12.1-2 [2005 kB] Get:206 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.1-2 [2287 kB] Get:207 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-dev arm64 3.12.1-2 [5392 kB] Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3-all-dev arm64 3.11.4-5ubuntu1 [916 B] Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] Get:210 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] Get:211 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libxsimd-dev arm64 10.0.0-3 [103 kB] Get:212 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.35-1 [161 kB] Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 mafft arm64 7.505-1 [756 kB] Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-blast+ arm64 2.12.0+ds-4 [12.1 MB] Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 phylip arm64 1:3.697+dfsg-3 [844 kB] Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 prank arm64 0.0.170427+dfsg-3 [325 kB] Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 preview-latex-style all 13.2-1 [347 kB] Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 probcons arm64 1.12-14 [129 kB] Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] Get:221 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12 arm64 3.12.1-2 [638 kB] Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-all arm64 3.11.4-5ubuntu1 [910 B] Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-dev arm64 3.11.7-2 [508 kB] Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-dev arm64 3.11.4-5ubuntu1 [26.8 kB] Get:225 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-dev arm64 3.12.1-2 [506 kB] Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-all-dev arm64 3.11.4-5ubuntu1 [920 B] Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] Get:228 http://ftpmaster.internal/ubuntu noble/main arm64 python3-attr all 23.1.0-2 [50.6 kB] Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-gast all 0.5.2-2 [9394 B] Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-beniget all 0.4.1-3 [10.0 kB] Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2 [345 kB] Get:232 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-1 [120 kB] Get:233 http://ftpmaster.internal/ubuntu noble/main arm64 python3-chardet all 5.2.0+dfsg-1 [117 kB] Get:234 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-1build2 [244 kB] Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-1 [8156 B] Get:237 http://ftpmaster.internal/ubuntu noble/main arm64 python3-six all 1.16.0-4 [12.4 kB] Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] Get:239 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] Get:240 http://ftpmaster.internal/ubuntu noble/main arm64 python3-ply all 3.11-6 [46.5 kB] Get:241 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-pythran arm64 0.14.0+ds-4 [438 kB] Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.10.1-6 [18.7 MB] Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-2 [419 kB] Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-6 [3966 kB] Get:246 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tz all 2023.3.post1-2 [31.4 kB] Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-2 [91.0 kB] Get:248 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 4.9.3-1build1 [2001 kB] Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build2 [28.4 kB] Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB] Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1 [1625 kB] Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-isodate all 0.6.1-1 [24.7 kB] Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-1build2 [65.4 kB] Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-pil arm64 10.1.0-1 [476 kB] Get:256 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.11.5-1 [112 kB] Get:257 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-pil.imagetk arm64 10.1.0-1 [9690 B] Get:258 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pyparsing all 3.1.1-1 [86.2 kB] Get:259 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu3 [7291 kB] Get:261 http://ftpmaster.internal/ubuntu noble/main arm64 python3-msgpack arm64 1.0.3-3build1 [93.0 kB] Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mmtf all 1.1.3-1 [16.2 kB] Get:263 http://ftpmaster.internal/ubuntu noble/main arm64 python3-mysqldb arm64 1.4.6-2build2 [51.7 kB] Get:264 http://ftpmaster.internal/ubuntu noble/main arm64 python3-networkx all 2.8.8-1ubuntu1 [1468 kB] Get:265 http://ftpmaster.internal/ubuntu noble/main arm64 python3-psycopg2 arm64 2.9.9-1 [177 kB] Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rdflib all 6.1.1-2 [362 kB] Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.0.8-1 [683 kB] Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 samtools arm64 1.19-1 [584 kB] Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 t-coffee arm64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [879 kB] Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-fonts-recommended all 2023.20231207-1 [4972 kB] Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20231207-1 [1231 kB] Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 libfontbox-java all 1:1.8.16-5 [208 kB] Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 libpdfbox-java all 1:1.8.16-5 [5521 kB] Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-recommended all 2023.20231207-1 [8818 kB] Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-pictures all 2023.20231207-1 [16.6 MB] Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-extra all 2023.20231207-3 [19.2 MB] Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 wise-data all 2.4.1-23 [76.8 kB] Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 wise arm64 2.4.1-23 [964 kB] Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 fasttree arm64 2.1.11-2 [164 kB] Preconfiguring packages ... Fetched 353 MB in 12s (29.1 MB/s) Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... 13858 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.7-2_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.7-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_arm64.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:arm64 (3.11.7-2) ... Setting up libexpat1:arm64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14172 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.4-5ubuntu1_arm64.deb ... Unpacking python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../3-libpython3.11-stdlib_3.11.7-2_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.7-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../4-python3.11_3.11.7-2_arm64.deb ... Unpacking python3.11 (3.11.7-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../5-libpython3-stdlib_3.11.4-5ubuntu1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.4-5ubuntu1) ... Setting up python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package python3. 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Selecting previously unselected package python3-pyparsing. Preparing to unpack .../247-python3-pyparsing_3.1.1-1_all.deb ... Unpacking python3-pyparsing (3.1.1-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../248-python3-packaging_23.2-1_all.deb ... Unpacking python3-packaging (23.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../249-python3-matplotlib_3.6.3-1ubuntu3_arm64.deb ... Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... Selecting previously unselected package python3-msgpack. Preparing to unpack .../250-python3-msgpack_1.0.3-3build1_arm64.deb ... Unpacking python3-msgpack (1.0.3-3build1) ... Selecting previously unselected package python3-mmtf. Preparing to unpack .../251-python3-mmtf_1.1.3-1_all.deb ... Unpacking python3-mmtf (1.1.3-1) ... Selecting previously unselected package python3-mysqldb. Preparing to unpack .../252-python3-mysqldb_1.4.6-2build2_arm64.deb ... Unpacking python3-mysqldb (1.4.6-2build2) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../253-python3-networkx_2.8.8-1ubuntu1_all.deb ... Unpacking python3-networkx (2.8.8-1ubuntu1) ... Selecting previously unselected package python3-psycopg2. Preparing to unpack .../254-python3-psycopg2_2.9.9-1_arm64.deb ... Unpacking python3-psycopg2 (2.9.9-1) ... Selecting previously unselected package python3-rdflib. Preparing to unpack .../255-python3-rdflib_6.1.1-2_all.deb ... Unpacking python3-rdflib (6.1.1-2) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../256-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../257-python3-reportlab_4.0.8-1_all.deb ... Unpacking python3-reportlab (4.0.8-1) ... Selecting previously unselected package samtools. Preparing to unpack .../258-samtools_1.19-1_arm64.deb ... Unpacking samtools (1.19-1) ... Selecting previously unselected package t-coffee. Preparing to unpack .../259-t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_arm64.deb ... Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../260-texlive-fonts-recommended_2023.20231207-1_all.deb ... Unpacking texlive-fonts-recommended (2023.20231207-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../261-texlive-latex-base_2023.20231207-1_all.deb ... Unpacking texlive-latex-base (2023.20231207-1) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../262-libfontbox-java_1%3a1.8.16-5_all.deb ... Unpacking libfontbox-java (1:1.8.16-5) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../263-libpdfbox-java_1%3a1.8.16-5_all.deb ... Unpacking libpdfbox-java (1:1.8.16-5) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../270-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:arm64 (1.6.0-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up liblmdb0:arm64 (0.9.31-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1build2) ... Setting up liblcms2-2:arm64 (2.14-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up libpixman-1-0:arm64 (0.42.2-1) ... Setting up libsharpyuv0:arm64 (1.3.2-0.3) ... Setting up mysql-common (5.8+1.1.0) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient21:arm64 (8.0.35-1ubuntu2) ... Setting up libxau6:arm64 (1:1.0.9-1build5) ... Setting up imagemagick-6-common (8:6.9.11.60+dfsg-1.6ubuntu1) ... Setting up libhpdf-2.3.0:arm64 (2.3.0+dfsg-1build1) ... Setting up libboost1.83-dev:arm64 (1.83.0-1ubuntu3) ... Setting up libpsl5:arm64 (0.21.2-1build1) ... Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up probcons (1.12-14) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up mafft (7.505-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.78.3-1) ... No schema files found: doing nothing. Setting up bwa (0.7.17-7) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libijs-0.35:arm64 (0.35-15.1) ... Setting up libdebhelper-perl (13.11.8ubuntu1) ... Setting up libgs-common (10.02.1~dfsg1-0ubuntu1) ... Setting up libbrotli1:arm64 (1.1.0-2) ... Setting up libfontbox-java (1:1.8.16-5) ... Setting up phylip (1:3.697+dfsg-3) ... Setting up libpython3.12-minimal:arm64 (3.12.1-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:arm64 (1.58.0-1) ... Setting up libmagic1:arm64 (1:5.45-2) ... Setting up libnetpbm11:arm64 (2:11.04.05-2) ... Setting up libdeflate0:arm64 (1.18-1) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6) ... Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.45-2) ... Setting up emboss-data (6.6.0+dfsg-12ubuntu1) ... Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Setting up poppler-data (0.4.12-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-4) ... Setting up unicode-data (15.1.0-1) ... Setting up libxsimd-dev:arm64 (10.0.0-3) ... Setting up libfontenc1:arm64 (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.5.0-2) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1) ... Setting up libmbedcrypto7:arm64 (2.28.5-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjbig2dec0:arm64 (0.20-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libteckit0:arm64 (2.5.11+ds1-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... Setting up libncurses6:arm64 (6.4+20231209-1) ... Setting up libdbus-1-3:arm64 (1.14.10-1ubuntu1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:arm64 (1.0.13-3) ... Setting up t1utils (1.41-4build2) ... Setting up libtexlua53-5:arm64 (2023.20230311.66589-8build1) ... Setting up libimagequant0:arm64 (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libidn12:arm64 (1.41-1) ... Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up ucf (3.0043+nmu1) ... Setting up wise-data (2.4.1-23) ... Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... Setting up libltdl7:arm64 (2.4.7-7) ... Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... Setting up libcifpp-data (5.0.7.1-3build1) ... Setting up libkpathsea6:arm64 (2023.20230311.66589-8build1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-4) ... Setting up libssh-4:arm64 (0.10.5-3ubuntu1) ... Setting up libgfortran5:arm64 (13.2.0-9ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.3.2-0.3) ... Setting up libicu74:arm64 (74.2-1ubuntu1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libdav1d7:arm64 (1.3.0-2) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1) ... Setting up libuchardet0:arm64 (0.0.8-1) ... Setting up clustalw (2.1+lgpl-7) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:arm64 (2.5.0-2) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:arm64 (8.0.1-1build1) ... Setting up fasttree (2.1.11-2) ... Setting up netbase (6.4) ... Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libde265-0:arm64 (1.0.13-1) ... Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... Setting up libwebpmux3:arm64 (1.3.2-0.3) ... Setting up libbsd0:arm64 (0.11.7-4) ... Setting up libelf1:arm64 (0.190-1) ... Setting up dialign (2.2.1-11) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3build3) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:arm64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up libsynctex2:arm64 (2023.20230311.66589-8build1) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpotrace0:arm64 (1.16-2) ... Setting up libjpeg8:arm64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.1-2) ... Setting up libpaper1:arm64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:arm64 (2:1.0.10-1build2) ... Setting up libdw1:arm64 (0.190-1) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu5) ... Setting up flex (2.6.4-8.2) ... Setting up liblapack3:arm64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14) ... Setting up libopenblas0-pthread:arm64 (0.3.25+ds-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libpython3.12-stdlib:arm64 (3.12.1-2) ... Setting up libmbedx509-1:arm64 (2.28.5-1) ... Setting up libmbedtls14:arm64 (2.28.5-1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up fontconfig-config (2.14.2-6ubuntu1) ... Setting up wise (2.4.1-23) ... Setting up libwebpdemux2:arm64 (1.3.2-0.3) ... Setting up libpython3.11-stdlib:arm64 (3.11.7-2) ... Setting up python3.12 (3.12.1-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... Setting up libpq5:arm64 (16.1-1build1) ... Setting up libcommons-logging-java (1.2-4) ... Setting up libcurl3-gnutls:arm64 (8.4.0-2ubuntu1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up clustalo (1.2.4-8) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libcifpp5:arm64 (5.0.7.1-3build1) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libptexenc1:arm64 (2023.20230311.66589-8build1) ... Setting up libraqm0:arm64 (0.10.1-1) ... Setting up libjs-sphinxdoc (7.2.6-3) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:arm64 (0.3.25+ds-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:arm64 (4.5.1+git230720-1ubuntu1) ... Setting up libxslt1.1:arm64 (1.1.35-1) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:arm64 (2:1.8.7-1) ... Setting up libfontconfig1:arm64 (2.14.2-6ubuntu1) ... Setting up libsm6:arm64 (2:1.2.3-1build2) ... Setting up libpython3.12:arm64 (3.12.1-2) ... Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... Setting up libpython3-stdlib:arm64 (3.11.4-5ubuntu1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:arm64 (0.3.25+ds-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode Setting up python3.11 (3.11.7-2) ... Setting up libhts3:arm64 (1.18+ds-1) ... Setting up libpython3.11:arm64 (3.11.7-2) ... Setting up libxpm4:arm64 (1:3.5.17-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (13.2-1) ... Setting up libxext6:arm64 (2:1.3.4-1build1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up libpython3.12-dev:arm64 (3.12.1-2) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up dssp (4.2.2-2) ... Setting up python3-freetype (2.4.0-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libcairo2:arm64 (1.18.0-1) ... Setting up python3-tz (2023.3.post1-2) ... Setting up samtools (1.19-1) ... Setting up ncbi-blast+ (2.12.0+ds-4) ... Setting up python3-mysqldb (1.4.6-2build2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-pil:arm64 (10.1.0-1) ... Setting up libopenblas-dev:arm64 (0.3.25+ds-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up libpython3.11-dev:arm64 (3.11.7-2) ... Setting up python3-brotli (1.1.0-2) ... Setting up python3-cycler (0.11.0-1) ... Setting up libgd3:arm64 (2.3.3-9ubuntu1) ... Setting up python3-kiwisolver (1.4.4-1build2) ... Setting up python3.12-dev (3.12.1-2) ... Setting up python3-psycopg2 (2.9.9-1) ... Setting up netpbm (2:11.04.05-2) ... Setting up libxt6:arm64 (1:1.2.1-1.1) ... Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... Setting up python3-lxml:arm64 (4.9.3-1build1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up emboss-lib (6.6.0+dfsg-12ubuntu1) ... Setting up python3-msgpack (1.0.3-3build1) ... Setting up libxss1:arm64 (1:1.2.3-1build2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up libgs10-common (10.02.1~dfsg1-0ubuntu1) ... Setting up python3-sympy (1.12-6) ... Setting up python3-attr (23.1.0-2) ... Setting up libxft2:arm64 (2.3.6-1) ... Setting up libxmu6:arm64 (2:1.1.3-3) ... Setting up libpython3-dev:arm64 (3.11.4-5ubuntu1) ... Setting up python3-cairo:arm64 (1.25.1-1) ... Setting up emboss (6.6.0+dfsg-12ubuntu1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libxi6:arm64 (2:1.8-1build1) ... Setting up python3-lz4 (4.0.2+dfsg-1build2) ... Setting up python3.11-dev (3.11.7-2) ... Setting up libtk8.6:arm64 (8.6.13-2) ... Setting up python3-ply (3.11-6) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.4-5ubuntu1) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libxaw7:arm64 (2:1.0.14-1) ... Setting up python3-networkx (2.8.8-1ubuntu1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' "graph [edge [ source u'u\4200' target u'u\4200' ] " /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' + "node [ id u'u\4200' label b ] ]" Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.15.1+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:arm64 (3.11.4-5ubuntu1) ... Setting up python3-dev (3.11.4-5ubuntu1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-reportlab (4.0.8-1) ... Setting up texlive-binaries (2023.20230311.66589-8build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-rdflib (6.1.1-2) ... /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' """Converts the given graph into a networkx.MultiDiGraph. /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' """Converts the given graph into a networkx.DiGraph. /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' """Converts the given graph into a networkx.Graph. Setting up python3-contourpy (1.0.7-1build2) ... Setting up texlive-base (2023.20231207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgs10:arm64 (10.02.1~dfsg1-0ubuntu1) ... Setting up dh-python (6.20231204) ... Setting up python3-all-dev (3.11.4-5ubuntu1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-tk:arm64 (3.11.5-1) ... Setting up python3-mmtf (1.1.3-1) ... Setting up ghostscript (10.02.1~dfsg1-0ubuntu1) ... Setting up texlive-latex-base (2023.20231207-1) ... Setting up python3-pil.imagetk:arm64 (10.1.0-1) ... Setting up texlive-latex-recommended (2023.20231207-1) ... Setting up texlive-pictures (2023.20231207-1) ... Setting up python3-pythran (0.14.0+ds-4) ... Setting up texlive-fonts-recommended (2023.20231207-1) ... Setting up python3-scipy (1.10.1-6) ... Setting up texlive-latex-extra (2023.20231207-3) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up libheif-plugin-dav1d:arm64 (1.17.4-1ubuntu1) ... Setting up libheif-plugin-libde265:arm64 (1.17.4-1ubuntu1) ... Setting up libheif1:arm64 (1.17.4-1ubuntu1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up libmagickcore-6.q16-6:arm64 (8:6.9.11.60+dfsg-1.6ubuntu1) ... Setting up libmagickwand-6.q16-6:arm64 (8:6.9.11.60+dfsg-1.6ubuntu1) ... Setting up python3-matplotlib (3.6.3-1ubuntu3) ... Setting up imagemagick-6.q16 (8:6.9.11.60+dfsg-1.6ubuntu1) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up hevea (2.36-2) ... Setting up imagemagick (8:6.9.11.60+dfsg-1.6ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for systemd (255-1ubuntu1) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 arm64 (aarch64) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-aarch64-linux-gnu_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 blt_2.5.3+dfsg-7 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bwa_0.7.17-7 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 clustalo_1.2.4-8 clustalw_2.1+lgpl-7 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20231204 dh-strip-nondeterminism_1.13.1-1 dialign_2.2.1-11 diffutils_1:3.10-1 dpkg_1.22.1ubuntu5 dpkg-dev_1.22.1ubuntu5 dssp_4.2.2-2 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 emboss_6.6.0+dfsg-12ubuntu1 emboss-data_6.6.0+dfsg-12ubuntu1 emboss-lib_6.6.0+dfsg-12ubuntu1 fakeroot_1.32.2-1 fasttree_2.1.11-2 file_1:5.45-2 findutils_4.9.0-5 flex_2.6.4-8.2 fontconfig-config_2.14.2-6ubuntu1 fonts-dejavu-core_2.37-8 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libudev1_255-1ubuntu1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6ubuntu1 libwebp7_1.3.2-0.3 libwebpdemux2_1.3.2-0.3 libwebpmux3_1.3.2-0.3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1build5 libxaw7_2:1.0.14-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu5 libxext6_2:1.3.4-1build1 libxft2_2.3.6-1 libxi6_2:1.8-1build1 libxml2_2.9.14+dfsg-1.3build3 libxmu6_2:1.1.3-3 libxpm4_1:3.5.17-1 libxrender1_1:0.9.10-1.1 libxsimd-dev_10.0.0-3 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1build2 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_6.6.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-3ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_44 m4_1.4.19-4 mafft_7.505-1 make_4.3-4.1build1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.2-6ubuntu1 mysql-common_5.8+1.1.0 ncbi-blast+_2.12.0+ds-4 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 netpbm_2:11.04.05-2 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 phylip_1:3.697+dfsg-3 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 poppler-data_0.4.12-1 prank_0.0.170427+dfsg-3 preview-latex-style_13.2-1 probcons_1.12-14 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 python-matplotlib-data_3.6.3-1ubuntu3 python3_3.11.4-5ubuntu1 python3-all_3.11.4-5ubuntu1 python3-all-dev_3.11.4-5ubuntu1 python3-appdirs_1.4.4-4 python3-attr_23.1.0-2 python3-beniget_0.4.1-3 python3-brotli_1.1.0-2 python3-cairo_1.25.1-1 python3-chardet_5.2.0+dfsg-1 python3-contourpy_1.0.7-1build2 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-3 python3-decorator_5.1.1-5 python3-dev_3.11.4-5ubuntu1 python3-distutils_3.11.5-1 python3-fonttools_4.46.0-1 python3-freetype_2.4.0-1 python3-fs_2.4.16-2 python3-gast_0.5.2-2 python3-isodate_0.6.1-1 python3-kiwisolver_1.4.4-1build2 python3-lib2to3_3.11.5-1 python3-lxml_4.9.3-1build1 python3-lz4_4.0.2+dfsg-1build2 python3-matplotlib_3.6.3-1ubuntu3 python3-minimal_3.11.4-5ubuntu1 python3-mmtf_1.1.3-1 python3-mpmath_1.2.1-2 python3-msgpack_1.0.3-3build1 python3-mysqldb_1.4.6-2build2 python3-networkx_2.8.8-1ubuntu1 python3-numpy_1:1.24.2-2 python3-packaging_23.2-1 python3-pil_10.1.0-1 python3-pil.imagetk_10.1.0-1 python3-pkg-resources_68.1.2-2 python3-ply_3.11-6 python3-psycopg2_2.9.9-1 python3-pygments_2.15.1+dfsg-1 python3-pyparsing_3.1.1-1 python3-pythran_0.14.0+ds-4 python3-rdflib_6.1.1-2 python3-reportlab_4.0.8-1 python3-rlpycairo_0.3.0-3 python3-scipy_1.10.1-6 python3-setuptools_68.1.2-2 python3-six_1.16.0-4 python3-sympy_1.12-6 python3-tk_3.11.5-1 python3-tz_2023.3.post1-2 python3-ufolib2_0.16.0+dfsg1-1 python3.11_3.11.7-2 python3.11-dev_3.11.7-2 python3.11-minimal_3.11.7-2 python3.12_3.12.1-2 python3.12-dev_3.12.1-2 python3.12-minimal_3.12.1-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 samtools_1.19-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 t1utils_1.41-4build2 tar_1.34+dfsg-1.2ubuntu2 tex-common_6.18 texlive-base_2023.20231207-1 texlive-binaries_2023.20230311.66589-8build1 texlive-fonts-recommended_2023.20231207-1 texlive-latex-base_2023.20231207-1 texlive-latex-extra_2023.20231207-3 texlive-latex-recommended_2023.20231207-1 texlive-pictures_2023.20231207-1 tk8.6-blt2.5_2.5.3+dfsg-7 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 ucf_3.0043+nmu1 unicode-data_15.1.0-1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 wise_2.4.1-23 wise-data_2.4.1-23 x11-common_1:7.7+23ubuntu2 xdg-utils_1.1.3-4.1ubuntu3 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-biopython Binary: python3-biopython, python-biopython-doc, python3-biopython-sql Architecture: any all Version: 1.81+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://biopython.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-biopython Vcs-Git: https://salsa.debian.org/med-team/python-biopython.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, python3-all, python3-setuptools Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-numpy, flex, python3-reportlab (>= 4.0.4-1~) , hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa , clustalo , clustalw , dialign , dssp , emboss , fasttree , mafft , muscle3 [i386 amd64 x32] , ncbi-blast+ , phylip , phyml [any-amd64 any-i386] , prank , probcons , python3-networkx , python3-mysqldb , python3-matplotlib , python3-mmtf , python3-pil , python3-rdflib , python3-psycopg2 , python3-pygments , python3-scipy , python3-setuptools, raxml [any-amd64 any-i386] , samtools , t-coffee , wise Package-List: python-biopython-doc deb doc optional arch=all python3-biopython deb python optional arch=any python3-biopython-sql deb python optional arch=all Checksums-Sha1: d8b39f189078bd119960a3e5c3136e1cc53e4d64 11483844 python-biopython_1.81+dfsg.orig.tar.xz a6316a132faae639c1cf16a69dc8bf95d5b041fb 20648 python-biopython_1.81+dfsg-3.debian.tar.xz Checksums-Sha256: 459868a86c2e47a0cc2f19be1371dd5309474b3106d17093cadebf7abdd03413 11483844 python-biopython_1.81+dfsg.orig.tar.xz 8e7c5fd6cc1083dac06685efc2b3d0348f2f4f7e48de9f937889f1ee2fba5e85 20648 python-biopython_1.81+dfsg-3.debian.tar.xz Files: 67dfa4cf427956d8dbb5be53c2b62d49 11483844 python-biopython_1.81+dfsg.orig.tar.xz be0f3c2b225c80fe9357602637ddac0a 20648 python-biopython_1.81+dfsg-3.debian.tar.xz Dgit: fc4a86917f01b1991062e474f3aff0dd4cb5b688 debian archive/debian/1.81+dfsg-3 https://git.dgit.debian.org/python-biopython -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWBqr8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo/hBAAx+XErhqjvOMT5cWedtG5uJCODKt8 UqED+aHDdMN6BPSTsxAU0L+AEQ9RzidaCBePcyVj/oQe0msVMnb8hUrKCZTMcrEF n4hDJYb7ZuOfHiH8LOVHVGUFLovY77////4NuXKenvLR1lp9Dw9MfYcqCen/RPD6 adPPBrc+pd1UbTy4MFXcI94BLUTcbdhiS9k7mn6dFPlwTwU5noJriOfP3ec7RPW3 cjJFu5XbY5xpjFwBXdfJkoM2L//+Og34v/SOyj+4+FFmA3U1Q/osBQn7PZIOySbt 89LhfwY9tHG4XvdORW7g+UEA8HjE8a2UK4U6TWKKohSzRKgQysl0cRCSD+g2j89G wtCm9wqbsSVU7oeWcekavLp/8nb8qVknSXJag+FpZZflwcYDk2WQcvJGp7WkrPB+ 1whPdj4MjLfx5J+Re0h2/l6s+ChHlekyLGlKkwLuafLBO1qkXyKgHKXhndiiY2Bd GtkrlsfTWHP/svtimDedfuFrgVQlO591Js2x4UaddRYZ6yvBGxHQCvny2PL/OyyU EGift6R55uxV496kp70Ach7t6XWT2RVoDzL1bYSK60+p0wo8yJXVoK2/J74Hw/J6 nVMn7CtR4CY+UMZm+O0wNnCh1sgxGmbEHdfHXtbLvpXRZ/qi/W0O/hALd96BoPR3 dkfQjmaqbR7x4UI= =L69E -----END PGP SIGNATURE----- gpgv: Signature made Tue Dec 19 14:37:51 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.81+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting python-biopython in /<> dpkg-source: info: unpacking python-biopython_1.81+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.81+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying croak-on-muscle5.patch dpkg-source: info: applying muscle3.patch dpkg-source: info: applying port_tutorial_to_muscle3.patch dpkg-source: info: applying remove-distutils-import.patch dpkg-source: info: applying python3.12.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27578503 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27578503 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27578503 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.81+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:310: python3.12 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:310: python3.11 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/<>/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux rm -rf _minted-Tutorial ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/<>/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:310: python3.12 setup.py config running config I: pybuild base:310: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:310: /usr/bin/python3.12 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/SeqFeature.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/kNN.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/MarkovModel.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/bgzf.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/LogisticRegression.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/SeqRecord.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/NaiveBayes.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/_utils.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/Seq.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/File.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/MaxEntropy.py -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/pairwise2.py -> /<>/.pybuild/cpython3_3.12/build/Bio creating /<>/.pybuild/cpython3_3.12/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Affy creating /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/tabular.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bigmaf.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/a2m.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/interfaces.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/mauve.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/msf.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/sam.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/hhr.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/stockholm.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/fasta.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/maf.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bigpsl.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/phylip.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/exonerate.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/nexus.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bigbed.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/psl.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/clustal.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/emboss.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bed.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align creating /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications creating /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices creating /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO creating /<>/.pybuild/cpython3_3.12/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Alphabet creating /<>/.pybuild/cpython3_3.12/build/Bio/Application copying Bio/Application/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Application creating /<>/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Blast creating /<>/.pybuild/cpython3_3.12/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/CAPS creating /<>/.pybuild/cpython3_3.12/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.12/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/.pybuild/cpython3_3.12/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/.pybuild/cpython3_3.12/build/Bio/codonalign creating /<>/.pybuild/cpython3_3.12/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Compass creating /<>/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/PDBData.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Data creating /<>/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Emboss creating /<>/.pybuild/cpython3_3.12/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez creating /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy creating /<>/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/.pybuild/cpython3_3.12/build/Bio/GenBank creating /<>/.pybuild/cpython3_3.12/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Geo creating /<>/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics creating /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram creating /<>/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/HMM creating /<>/.pybuild/cpython3_3.12/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG creating /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound creating /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme creating /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene creating /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Map creating /<>/.pybuild/cpython3_3.12/build/Bio/PDB creating /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf creating /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML creating /<>/.pybuild/cpython3_3.12/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Medline creating /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs creating /<>/.pybuild/cpython3_3.12/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs/applications creating /<>/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar creating /<>/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Nexus creating /<>/.pybuild/cpython3_3.12/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/.pybuild/cpython3_3.12/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/.pybuild/cpython3_3.12/build/Bio/NMR creating /<>/.pybuild/cpython3_3.12/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Pathway creating /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/PDB/MMCIFParser.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/cealign.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/qcprot.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Chain.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PICIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/SASA.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/ic_data.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB creating /<>/.pybuild/cpython3_3.12/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/.pybuild/cpython3_3.12/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/.pybuild/cpython3_3.12/build/Bio/phenotype creating /<>/.pybuild/cpython3_3.12/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PopGen creating /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop creating /<>/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Restriction creating /<>/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SCOP creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO creating /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO creating /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO creating /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils creating /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing creating /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications creating /<>/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer creating /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer creating /<>/.pybuild/cpython3_3.12/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/SwissProt creating /<>/.pybuild/cpython3_3.12/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/TogoWS creating /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo creating /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications creating /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML creating /<>/.pybuild/cpython3_3.12/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/UniGene creating /<>/.pybuild/cpython3_3.12/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/.pybuild/cpython3_3.12/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/UniProt creating /<>/.pybuild/cpython3_3.12/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/.pybuild/cpython3_3.12/build/Bio/Wise creating /<>/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/DBUtils.py -> /<>/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/BioSeq.py -> /<>/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/__init__.py -> /<>/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/Loader.py -> /<>/.pybuild/cpython3_3.12/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> /<>/.pybuild/cpython3_3.12/build/Bio copying Bio/Align/_aligners.c -> /<>/.pybuild/cpython3_3.12/build/Bio/Align creating /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/.pybuild/cpython3_3.12/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/.pybuild/cpython3_3.12/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/.pybuild/cpython3_3.12/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs creating /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/PDB/ccealignmodule.c -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/kdtrees.c -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/Bio creating build/temp.linux-aarch64-cpython-312/Bio/Align aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligners.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_aligners.o Bio/Align/_aligners.c: In function ‘Aligner_watermansmithbeyer_global_align_compare’: Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_aligners.c: In function ‘Aligner_watermansmithbeyer_local_align_compare’: Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here 5405 | double** Ix_row; \ | ^~~~~~ In function ‘Aligner_watermansmithbeyer_global_align_matrix’, inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6872:34: Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_aligners.c: In function ‘Aligner_align’: Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here 5406 | double** Iy_row; \ | ^~~~~~ In function ‘Aligner_watermansmithbeyer_global_align_matrix’, inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6872:34: Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_aligners.c: In function ‘Aligner_align’: Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here 5405 | double** Ix_row; \ | ^~~~~~ In function ‘Aligner_watermansmithbeyer_local_align_matrix’, inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6878:34: Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_aligners.c: In function ‘Aligner_align’: Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here 5406 | double** Iy_row; \ | ^~~~~~ In function ‘Aligner_watermansmithbeyer_local_align_matrix’, inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6878:34: Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_aligners.c: In function ‘Aligner_align’: Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here 5405 | double** Ix_row; \ | ^~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/Align/_aligners.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so building 'Bio.cpairwise2' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-aarch64-cpython-312/Bio/Nexus aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-aarch64-cpython-312/Bio/PDB creating build/temp.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/qcprotmodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-aarch64-cpython-312/Bio/motifs aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-aarch64-cpython-312/Bio/Cluster aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so building 'Bio.PDB.kdtrees' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so building 'Bio.PDB.ccealign' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-aarch64-cpython-312/Bio/SeqIO aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so I: pybuild base:310: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/SeqFeature.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/kNN.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/MarkovModel.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/bgzf.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/LogisticRegression.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/SeqRecord.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/NaiveBayes.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/_utils.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/Seq.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/File.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/MaxEntropy.py -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/pairwise2.py -> /<>/.pybuild/cpython3_3.11/build/Bio creating /<>/.pybuild/cpython3_3.11/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Affy creating /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/tabular.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigmaf.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/a2m.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/interfaces.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/mauve.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/msf.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/sam.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/hhr.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/stockholm.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/fasta.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/maf.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigpsl.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/phylip.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/exonerate.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/nexus.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigbed.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/psl.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/clustal.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/emboss.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bed.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align creating /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications creating /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices creating /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO creating /<>/.pybuild/cpython3_3.11/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Alphabet creating /<>/.pybuild/cpython3_3.11/build/Bio/Application copying Bio/Application/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Application creating /<>/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Blast creating /<>/.pybuild/cpython3_3.11/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/CAPS creating /<>/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/.pybuild/cpython3_3.11/build/Bio/codonalign creating /<>/.pybuild/cpython3_3.11/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Compass creating /<>/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/PDBData.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Data creating /<>/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Emboss creating /<>/.pybuild/cpython3_3.11/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez creating /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy creating /<>/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/.pybuild/cpython3_3.11/build/Bio/GenBank creating /<>/.pybuild/cpython3_3.11/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Geo creating /<>/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics creating /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram creating /<>/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/HMM creating /<>/.pybuild/cpython3_3.11/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG creating /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound creating /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme creating /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene creating /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Map creating /<>/.pybuild/cpython3_3.11/build/Bio/PDB creating /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf creating /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML creating /<>/.pybuild/cpython3_3.11/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Medline creating /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs creating /<>/.pybuild/cpython3_3.11/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs/applications creating /<>/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar creating /<>/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Nexus creating /<>/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/.pybuild/cpython3_3.11/build/Bio/NMR creating /<>/.pybuild/cpython3_3.11/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Pathway creating /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/PDB/MMCIFParser.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/cealign.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/qcprot.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Chain.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PICIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/SASA.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ic_data.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB creating /<>/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/.pybuild/cpython3_3.11/build/Bio/phenotype creating /<>/.pybuild/cpython3_3.11/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PopGen creating /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop creating /<>/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Restriction creating /<>/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SCOP creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO creating /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO creating /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO creating /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils creating /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing creating /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications creating /<>/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer creating /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer creating /<>/.pybuild/cpython3_3.11/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/SwissProt creating /<>/.pybuild/cpython3_3.11/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/TogoWS creating /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo creating /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications creating /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML creating /<>/.pybuild/cpython3_3.11/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/UniGene creating /<>/.pybuild/cpython3_3.11/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/.pybuild/cpython3_3.11/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/UniProt creating /<>/.pybuild/cpython3_3.11/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/.pybuild/cpython3_3.11/build/Bio/Wise creating /<>/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/DBUtils.py -> /<>/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/BioSeq.py -> /<>/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/__init__.py -> /<>/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/Loader.py -> /<>/.pybuild/cpython3_3.11/build/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> /<>/.pybuild/cpython3_3.11/build/Bio copying Bio/Align/_aligners.c -> /<>/.pybuild/cpython3_3.11/build/Bio/Align creating /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/.pybuild/cpython3_3.11/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> 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Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> 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Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> 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Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs 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Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> 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/<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs creating /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/PDB/ccealignmodule.c -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/kdtrees.c -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/Bio creating build/temp.linux-aarch64-cpython-311/Bio/Align aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/Align/_aligners.c -o build/temp.linux-aarch64-cpython-311/Bio/Align/_aligners.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/Align/_aligners.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so building 'Bio.cpairwise2' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-cpython-311/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.11/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.11/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/cpairwise2module.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-aarch64-cpython-311/Bio/Nexus aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-cpython-311/Bio/Nexus/cnexus.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/Nexus/cnexus.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-aarch64-cpython-311/Bio/PDB creating build/temp.linux-aarch64-cpython-311/Bio/PDB/QCPSuperimposer aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-aarch64-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-aarch64-cpython-311/Bio/motifs aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-cpython-311/Bio/motifs/_pwm.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/motifs/_pwm.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-aarch64-cpython-311/Bio/Cluster aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-cpython-311/Bio/Cluster/cluster.o aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-cpython-311/Bio/Cluster/clustermodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/Cluster/cluster.o build/temp.linux-aarch64-cpython-311/Bio/Cluster/clustermodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so building 'Bio.PDB.kdtrees' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.linux-aarch64-cpython-311/Bio/PDB/kdtrees.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/PDB/kdtrees.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so building 'Bio.PDB.ccealign' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-aarch64-cpython-311/Bio/PDB/ccealignmodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-aarch64-cpython-311/Bio/SeqIO aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -fwrapv -O2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-aarch64-cpython-311/Bio/SeqIO/_twoBitIO.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/python-biopython-1.81+dfsg-3 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so cd Doc && make make[2]: Entering directory '/<>/Doc' sed "s/\@VERSION\@/1.81/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:185: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:191: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:155: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:157: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:278: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:353: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:469: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:475: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:33: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:37: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:275: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:278: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:292: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:502: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:600: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:648: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:651: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:793: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:805: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:806: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:819: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:12: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:12: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:14: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:22: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:22: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:43: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:68: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:150: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:306: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:329: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:398: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:414: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:509: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:565: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:571: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:575: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:578: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:581: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:588: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:661: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:783: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:804: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:866: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:948: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1189: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1232: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1232: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1311: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1331: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1412: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:913: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:917: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:947: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:955: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1093: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1317: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1492: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1505: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1578: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1608: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1608: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1608: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1609: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1612: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1613: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1639: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1639: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1668: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1772: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:1908: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2424: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2496: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2725: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2725: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2932: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3282: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3354: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3354: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3379: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:3379: Warning: Suppressing nested a element ./Tutorial/chapter_align.tex:3391: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:73: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:138: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:160: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:169: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:178: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:206: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:241: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:287: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:289: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:304: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:340: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:340: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:452: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:468: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_searchio.tex:739: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:1089: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:236: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:299: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:325: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:325: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:419: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:483: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:565: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:571: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:818: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:818: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:940: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1103: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1153: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1197: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1197: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1199: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1254: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1289: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1296: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1349: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1373: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1374: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1434: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1456: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1545: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1550: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1575: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' 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'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: 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./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_blast.tex:369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:440: Warning: line too long ./Tutorial/chapter_blast.tex:442: Warning: line too long ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:456: Warning: Image in text ./Tutorial/chapter_blast.tex:472: Warning: Image in text ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:489: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: 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./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: 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./Tutorial/chapter_entrez.tex:1545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:31: Warning: line too long ./Tutorial/chapter_uniprot.tex:34: Warning: 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: 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./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:607: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:611: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:616: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: 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mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial.tex:126: Warning: line too long ./Tutorial.tex:137: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:137: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:141: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:215: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:215: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:567: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: 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./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text 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./Tutorial/chapter_seqio.tex:22: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:43: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:43: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:43: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:68: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_seqio.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:150: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:248: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:290: Warning: Undefined block in text mode: 'CODE' [] 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[] ./Tutorial/chapter_seqio.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:329: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:398: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:414: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: 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'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:550: Warning: line too long ./Tutorial/chapter_seqio.tex:560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:564: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:564: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:565: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:569: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:571: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:575: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:578: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:581: Warning: '_' occurring outside math mode 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./Tutorial/chapter_seqio.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:783: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:804: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:804: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:804: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:834: Warning: Undefined block in text mode: 'CODE' 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'CODE' [] ./Tutorial/chapter_seqio.tex:1062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1073: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1073: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1082: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1082: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined 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Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1232: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1311: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1331: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1349: Warning: 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Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: 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in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:687: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:913: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:917: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:947: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:955: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1048: Warning: Undefined block in text mode: 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./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1818: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:1910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined 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Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2295: Warning: line too long ./Tutorial/chapter_align.tex:2311: Warning: line too long ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2428: Warning: line too long ./Tutorial/chapter_align.tex:2431: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2431: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2725: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2725: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: 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./Tutorial/chapter_align.tex:3070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3282: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3354: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3379: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3448: Warning: line too long ./Tutorial/chapter_align.tex:3450: Warning: line too long ./Tutorial/chapter_align.tex:3468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: line too long ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:73: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:138: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:160: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:169: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:178: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:206: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:241: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:287: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:289: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:304: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:340: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:440: Warning: line too long ./Tutorial/chapter_blast.tex:442: Warning: line too long ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined 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./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:497: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] 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in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined 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./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:278: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: 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./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:556: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:600: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:600: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:607: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:611: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:616: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in 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./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:26: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_learning.tex:28: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_learning.tex:36: Warning: Undefined block in text mode: 'DIV' 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./Tutorial/chapter_learning.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:277: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: 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./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: Undefined citation: 'vanderauwera2009' ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode 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'CODE' [] ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: 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./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: 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./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: 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./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math 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./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:338: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: 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(./_minted-Tutorial/4EBA0A67E686E73FAA1A0EB27C260028BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C06224D76A18C126B27DFE55444AA3FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 60 undefined on input li ne 1311. [60] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 61 undefined on input l ine 1331. (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1349--1351 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [61] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1393--1397 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:cookbook' on page 62 undefined on input line 1412. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [62] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 63 undefined on input l ine 31. LaTeX Warning: Reference `sec:AlignIO-count-argument' on page 63 undefined on i nput line 35. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF42669566ECC2CFEDC7429F829576A D0DC6.pygtex [63]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AECBD02851C2FB632864165FCA4920 46548.pygtex [64]) LaTeX Warning: Reference `sec:alignment-format' on page 65 undefined on input l ine 113. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 71 undefined on input l ine 444. Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [71]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [72]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [73]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 74 undefined on input l ine 633. 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(./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B045BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E941CFC951CAE25312D9A5CAC9B27425BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1126--1130 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/EA6A02999040945446E72AC6A00E56D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/106ED62B0CFC10E7D5BC6CFC9CE003BDBD02851C2FB632864165FCA4920 46548.pygtex [81]) (./_minted-Tutorial/4D75AC9EDD74C466535F1EC4944833F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A261B9E9E2D4EB3C1DF5131C6F739998BD02851C2FB632864165FCA4920 46548.pygtex [82]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E7454BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E87BDA1F176DA567A757DBA0231BC5BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6BF1884F2D94AF8D067A2A20A9A41E2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5CBD02851C2FB632864165FCA4920 46548.pygtex [83]) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE74BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:appendix-handles' on page 84 undefined on input l ine 1317. 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(./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:pairwise-aligner' on page 86 undefined on input l ine 1505. [86] (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4B1939051DE630E53C7151447C8DD4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [87]) LaTeX Warning: Citation `waterman1987' on page 88 undefined on input line 1578. (./_minted-Tutorial/E5E00F47BD7A0C8BC5F8818526283868BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:pairwise-substitution-scores' on page 88 undefine d on input line 1608. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 88 undefined o n input line 1608. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 88 undefined on input line 1608. LaTeX Warning: Reference `sec:pairwise-basic' on page 88 undefined on input lin e 1609. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 88 undefined o n input line 1612. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 88 undefined on input line 1613. (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) [88] LaTeX Warning: Citation `altschul1990' on page 89 undefined on input line 1639. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 89 undefined o n input line 1639. 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[][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [132]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [133]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [134]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [135] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [136]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [137]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [138] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [139] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [140]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 141 undefined on input lin e 739. Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [142]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [143]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [144] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [145] LaTeX Warning: Reference `sec:SeqIO-index' on page 146 undefined on input line 1089. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . 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(./_minted-Tutorial/0ABBC5325B76EBCC5687BB33E7595F219543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [206 <./images/1a8o-ca-plot.png>] Overfull \hbox (15.27203pt too wide) in paragraph at lines 1292--1295 []\OT1/cmr/m/n/10 This work uses equa-tions de-vel-oped by Blue, the Hedronome- ter, dis-cussed in [][]$\OT1/cmtt/m/n/10 https : / / math . stackexchange . Overfull \hbox (116.15723pt too wide) in paragraph at lines 1292--1295 \OT1/cmtt/m/n/10 com / a / 49340 / 409$[][] \OT1/cmr/m/n/10 and fur-ther in [][ ]$\OT1/cmtt/m/n/10 http : / / daylateanddollarshort . com / mathdocs / Heron-[] like-[]Results-[]for-[]Tetrahedral-[]Volume . 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[212] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A9BD02851C2FB632864165FCA4920 46548.pygtex [213]) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5DBD02851C2FB632864165FCA4920 46548.pygtex) [214] LaTeX Warning: Citation `hamelryck2003b' on page 215 undefined on input line 18 61. LaTeX Warning: Citation `majumdar2005' on page 215 undefined on input line 1862 . ) [215] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/331BEE386F268F55DE217F54E27EAB6B9543DFECA235A69AE23006BA05B 4EB70.pygtex) [216] (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [217] (./Tutorial/chapter_phylo.tex Chapter 13. 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[224 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 479--486 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [225] Overfull \hbox (13.48741pt too wide) in paragraph at lines 534--537 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [226] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [227] Overfull \hbox (15.04868pt too wide) in paragraph at lines 703--707 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . 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LaTeX Warning: Citation `dehoon2004' on page 258 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 258 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 258 undefined on input line 30. [258] [259] [260] LaTeX Warning: Citation `snedecor1989' on page 261 undefined on input line 154. [261] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 262 undefined on input line 183. 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[278] Overfull \hbox (106.77225pt too wide) in paragraph at lines 929--931 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `hihara2001' on page 279 undefined on input line 954. (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D70BD02851C2FB632864165FCA4920 46548.pygtex [279]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF58BD02851C2FB632864165FCA4920 46548.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [280] (./Tutorial/chapter_learning.tex Chapter 16. [281] LaTeX Warning: Reference `eq:OP' on page 282 undefined on input line 40. 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(./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA1119543DFECA235A69AE23006BA05B 4EB70.pygtex [306 <./images/three_track_simple.png>]) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD18409543DFECA235A69AE23006BA05B 4EB70.pygtex [307]) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C289543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 308 undefined on input li ne 894. LaTeX Warning: Reference `sec:gd_cross_links' on page 308 undefined on input li ne 901. LaTeX Warning: Reference `sec:gd_cross_links' on page 308 undefined on input li ne 901. Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [330]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 331 undefined on input line 480. 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(./_minted-Tutorial/FE4CF732C73126A3874795838D95FAB5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/55430EAFE498E385842834603E0B8C869543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB89543DFECA235A69AE23006BA05B 4EB70.pygtex [58]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E83669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/74E272C92C546FD61FA6D3DA5C178893BD02851C2FB632864165FCA4920 46548.pygtex) [59] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C78BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF4065BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A364BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [60]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 848--853 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 891--894 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [61]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A2777BD02851C2FB632864165FCA4920 46548.pygtex) [62] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C6471BD02851C2FB632864165FCA4920 46548.pygtex) [63] (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD73429543DFECA235A69AE23006BA05B 4EB70.pygtex [64]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C6669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D4669566ECC2CFEDC7429F829576A D0DC6.pygtex [65]) (./_minted-Tutorial/C194E2231D844AE7D0223173D2A899919543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D59543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/29D12D495374A5A8C37AEB7083851DEABD02851C2FB632864165FCA4920 46548.pygtex) [66] (./_minted-Tutorial/920133226A22EEB682D854077D7FB78FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4EBA0A67E686E73FAA1A0EB27C260028BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C06224D76A18C126B27DFE55444AA3FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) [67] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1349--1351 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [68] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1393--1397 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [69] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [78]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [79]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [80]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786CBD02851C2FB632864165FCA4920 46548.pygtex) [81] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE5BD02851C2FB632864165FCA4920 46548.pygtex [82]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B71692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E59BD02851C2FB632864165FCA4920 46548.pygtex [83]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A9253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE857C14E4731CC6F6EBA53051460097BD02851C2FB632864165FCA4920 46548.pygtex) [84] (./_minted-Tutorial/F88E003F9A4A95A929AA549FA710239CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD16BD02851C2FB632864165FCA4920 46548.pygtex) [85] (./_minted-Tutorial/CD47D1913C82182C164BD47DA4715282BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E893BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C63064BD02851C2FB632864165FCA4920 46548.pygtex) [86] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A442BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F986368BD02851C2FB632864165FCA4920 46548.pygtex [87]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B045BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E941CFC951CAE25312D9A5CAC9B27425BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1126--1130 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/EA6A02999040945446E72AC6A00E56D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/106ED62B0CFC10E7D5BC6CFC9CE003BDBD02851C2FB632864165FCA4920 46548.pygtex [88]) (./_minted-Tutorial/4D75AC9EDD74C466535F1EC4944833F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A261B9E9E2D4EB3C1DF5131C6F739998BD02851C2FB632864165FCA4920 46548.pygtex [89]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E7454BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E87BDA1F176DA567A757DBA0231BC5BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6BF1884F2D94AF8D067A2A20A9A41E2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5CBD02851C2FB632864165FCA4920 46548.pygtex [90]) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A240BD02851C2FB632864165FCA4920 46548.pygtex) [91] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC7266669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/39152F199CEBB3375366F2E947824519BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/256B036DA9C3EDBC9EE41E2E52FDE1ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF385674BD02851C2FB632864165FCA4920 46548.pygtex [92]) (./_minted-Tutorial/CEE035FF629B69F7D6B6351C1DCE2493BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF151703751D72BD556402B910190A87BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA88BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) [93] (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4B1939051DE630E53C7151447C8DD4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [94]) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F8818526283868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) [95] (./_minted-Tutorial/0FE96E337A3BA73D52896D46E2E233DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/434D41043E1630324FA64E8B55B90BD5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/48453D528762FF183499778647AF218BBD02851C2FB632864165FCA4920 46548.pygtex [96]) (./_minted-Tutorial/BD86EE3248811DE8FD9DE8ED02397A39BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Overfull \hbox (5.71313pt too wide) in paragraph at lines 45--46 []\OT1/cmr/m/n/10 NCBI guide-lines, from [][]$\OT1/cmtt/m/n/10 https : / / blas t . ncbi . nlm . nih . gov / Blast . cgi ? 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 481. ) [135] [136 <./images/BlastRecord.png>] [137 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [138] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [139]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [140]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [142] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [143]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [144]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [145] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [146] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [147]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [148]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [149]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [150]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [151] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [152] Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E9868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/51F256FC56FFFAE1F1E84A4EFC5BAE55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5BCEFFE3DBB7A0AE4FD5D950731D72DEBD02851C2FB632864165FCA4920 46548.pygtex) [153] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1167--1170 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C176BD02851C2FB632864165FCA4920 46548.pygtex)) [154] (./Tutorial/chapter_entrez.tex Chapter 9. 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Use \OT1/cmtt/m/n/10 structure[]rebuild[]test$$ (./_minted-Tutorial/BD4323A41DFED2A7E4CD261AA65F95EDBD02851C2FB632864165FCA4920 46548.pygtex) [210] (./_minted-Tutorial/6395F38A139598C6CC297CDBA73A8A43BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D2C13C2AA9395E0B1E4F1DDC801798BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12E711A2CBFD0B046AA026208A117C1E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/813FE78A3F8D8E46F06FF71539F000E69543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/CD78F368EB103F71947A3184BB62B46F9543DFECA235A69AE23006BA05B 4EB70.pygtex [211]) (./_minted-Tutorial/8E34478E945971E05C77F0A0E8C1B9D89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0D3FBB23D21A6A468370D56058193010BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBA5405CCC4A3178ADA49DA358246C819543DFECA235A69AE23006BA05B 4EB70.pygtex [212]) (./_minted-Tutorial/DE601B1883F045FBEE1B28168CFF0CCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AAF43F15691D49893FAEEAB7B7693A1D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0ABBC5325B76EBCC5687BB33E7595F219543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [213 <./images/1a8o-ca-plot.png>] Overfull \hbox (15.27203pt too wide) in paragraph at lines 1292--1295 []\OT1/cmr/m/n/10 This work uses equa-tions de-vel-oped by Blue, the Hedronome- ter, dis-cussed in [][]$\OT1/cmtt/m/n/10 https : / / math . stackexchange . Overfull \hbox (116.15723pt too wide) in paragraph at lines 1292--1295 \OT1/cmtt/m/n/10 com / a / 49340 / 409$[][] \OT1/cmr/m/n/10 and fur-ther in [][ ]$\OT1/cmtt/m/n/10 http : / / daylateanddollarshort . com / mathdocs / Heron-[] like-[]Results-[]for-[]Tetrahedral-[]Volume . 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBABD02851C2FB632864165FCA4920 46548.pygtex) [226] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1ADBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 182--185 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex [227 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[231 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 479--486 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [232] Overfull \hbox (13.48741pt too wide) in paragraph at lines 534--537 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [233] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [234] Overfull \hbox (15.04868pt too wide) in paragraph at lines 703--707 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . 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[265] [266] [267] [268] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2B72A7408C7DF74DFCEBE0485997287BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE601735827BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A25009543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C0BD02851C2FB632864165FCA4920 46548.pygtex [269]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 245--246 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB34BD02851C2FB632864165FCA4920 46548.pygtex) [270] [271] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762EBD02851C2FB632864165FCA4920 46548.pygtex) [272] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF92626BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [273] [274] Overfull \hbox (16.73593pt too wide) in paragraph at lines 423--424 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [337]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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Overfull \hbox (4.00363pt too wide) in paragraph at lines 1117--1120 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/798776F436EA559BACD9C305C09973919543DFECA235A69AE23006BA05B 4EB70.pygtex [347 <./images/hist_plot.png>]) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [348 <./images/gc_plot.png>] (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF79543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/80A47C8780CE3021D53829563E8166569543DFECA235A69AE23006BA05B 4EB70.pygtex [349 <./images/dot_plot.png>]) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F49543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/40ECF2E139F38209730D3B02B624EF74BD02851C2FB632864165FCA4920 46548.pygtex [357]) (./_minted-Tutorial/8965C8E87A0A43ECCE216C12F7DE7A4FBD02851C2FB632864165FCA4920 46548.pygtex)) [358] (./Tutorial/chapter_testing.tex Chapter 21. 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(./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C78BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF4065BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A364BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [60]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 848--853 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 891--894 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [61]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A2777BD02851C2FB632864165FCA4920 46548.pygtex) [62] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C6471BD02851C2FB632864165FCA4920 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(./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) [67] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1349--1351 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [68] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1393--1397 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [69] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [78]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [79]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [80]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786CBD02851C2FB632864165FCA4920 46548.pygtex) [81] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE5BD02851C2FB632864165FCA4920 46548.pygtex [82]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B71692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E59BD02851C2FB632864165FCA4920 46548.pygtex [83]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A9253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE857C14E4731CC6F6EBA53051460097BD02851C2FB632864165FCA4920 46548.pygtex) [84] (./_minted-Tutorial/F88E003F9A4A95A929AA549FA710239CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD16BD02851C2FB632864165FCA4920 46548.pygtex) [85] (./_minted-Tutorial/CD47D1913C82182C164BD47DA4715282BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E893BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C63064BD02851C2FB632864165FCA4920 46548.pygtex) [86] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A442BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F986368BD02851C2FB632864165FCA4920 46548.pygtex [87]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B045BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E941CFC951CAE25312D9A5CAC9B27425BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1126--1130 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/EA6A02999040945446E72AC6A00E56D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/106ED62B0CFC10E7D5BC6CFC9CE003BDBD02851C2FB632864165FCA4920 46548.pygtex [88]) (./_minted-Tutorial/4D75AC9EDD74C466535F1EC4944833F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A261B9E9E2D4EB3C1DF5131C6F739998BD02851C2FB632864165FCA4920 46548.pygtex [89]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E7454BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E87BDA1F176DA567A757DBA0231BC5BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6BF1884F2D94AF8D067A2A20A9A41E2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5CBD02851C2FB632864165FCA4920 46548.pygtex [90]) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A240BD02851C2FB632864165FCA4920 46548.pygtex) [91] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC7266669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/39152F199CEBB3375366F2E947824519BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/256B036DA9C3EDBC9EE41E2E52FDE1ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF385674BD02851C2FB632864165FCA4920 46548.pygtex [92]) (./_minted-Tutorial/CEE035FF629B69F7D6B6351C1DCE2493BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF151703751D72BD556402B910190A87BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA88BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) [93] (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4B1939051DE630E53C7151447C8DD4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [94]) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F8818526283868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) [95] (./_minted-Tutorial/0FE96E337A3BA73D52896D46E2E233DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/434D41043E1630324FA64E8B55B90BD5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/48453D528762FF183499778647AF218BBD02851C2FB632864165FCA4920 46548.pygtex [96]) (./_minted-Tutorial/BD86EE3248811DE8FD9DE8ED02397A39BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Overfull \hbox (5.71313pt too wide) in paragraph at lines 45--46 []\OT1/cmr/m/n/10 NCBI guide-lines, from [][]$\OT1/cmtt/m/n/10 https : / / blas t . ncbi . nlm . nih . gov / Blast . cgi ? 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 481. ) [135] [136 <./images/BlastRecord.png>] [137 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [138] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [139]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [140]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [142] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [143]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [144]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [145] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [146] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [147]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [148]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [149]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [150]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [151] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [152] Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E9868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/51F256FC56FFFAE1F1E84A4EFC5BAE55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5BCEFFE3DBB7A0AE4FD5D950731D72DEBD02851C2FB632864165FCA4920 46548.pygtex) [153] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1167--1170 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C176BD02851C2FB632864165FCA4920 46548.pygtex)) [154] (./Tutorial/chapter_entrez.tex Chapter 9. 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Use \OT1/cmtt/m/n/10 structure[]rebuild[]test$$ (./_minted-Tutorial/BD4323A41DFED2A7E4CD261AA65F95EDBD02851C2FB632864165FCA4920 46548.pygtex) [210] (./_minted-Tutorial/6395F38A139598C6CC297CDBA73A8A43BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D2C13C2AA9395E0B1E4F1DDC801798BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12E711A2CBFD0B046AA026208A117C1E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/813FE78A3F8D8E46F06FF71539F000E69543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/CD78F368EB103F71947A3184BB62B46F9543DFECA235A69AE23006BA05B 4EB70.pygtex [211]) (./_minted-Tutorial/8E34478E945971E05C77F0A0E8C1B9D89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0D3FBB23D21A6A468370D56058193010BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBA5405CCC4A3178ADA49DA358246C819543DFECA235A69AE23006BA05B 4EB70.pygtex [212]) (./_minted-Tutorial/DE601B1883F045FBEE1B28168CFF0CCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AAF43F15691D49893FAEEAB7B7693A1D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0ABBC5325B76EBCC5687BB33E7595F219543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [213 <./images/1a8o-ca-plot.png>] Overfull \hbox (15.27203pt too wide) in paragraph at lines 1292--1295 []\OT1/cmr/m/n/10 This work uses equa-tions de-vel-oped by Blue, the Hedronome- ter, dis-cussed in [][]$\OT1/cmtt/m/n/10 https : / / math . stackexchange . Overfull \hbox (116.15723pt too wide) in paragraph at lines 1292--1295 \OT1/cmtt/m/n/10 com / a / 49340 / 409$[][] \OT1/cmr/m/n/10 and fur-ther in [][ ]$\OT1/cmtt/m/n/10 http : / / daylateanddollarshort . com / mathdocs / Heron-[] like-[]Results-[]for-[]Tetrahedral-[]Volume . 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBABD02851C2FB632864165FCA4920 46548.pygtex) [226] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1ADBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 182--185 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex [227 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[231 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 479--486 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [232] Overfull \hbox (13.48741pt too wide) in paragraph at lines 534--537 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [233] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [234] Overfull \hbox (15.04868pt too wide) in paragraph at lines 703--707 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . 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[265] [266] [267] [268] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2B72A7408C7DF74DFCEBE0485997287BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE601735827BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A25009543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C0BD02851C2FB632864165FCA4920 46548.pygtex [269]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 245--246 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB34BD02851C2FB632864165FCA4920 46548.pygtex) [270] [271] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762EBD02851C2FB632864165FCA4920 46548.pygtex) [272] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF92626BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [273] [274] Overfull \hbox (16.73593pt too wide) in paragraph at lines 423--424 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [337]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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Overfull \hbox (4.00363pt too wide) in paragraph at lines 1117--1120 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/798776F436EA559BACD9C305C09973919543DFECA235A69AE23006BA05B 4EB70.pygtex [347 <./images/hist_plot.png>]) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [348 <./images/gc_plot.png>] (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF79543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/80A47C8780CE3021D53829563E8166569543DFECA235A69AE23006BA05B 4EB70.pygtex [349 <./images/dot_plot.png>]) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F49543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/40ECF2E139F38209730D3B02B624EF74BD02851C2FB632864165FCA4920 46548.pygtex [357]) (./_minted-Tutorial/8965C8E87A0A43ECCE216C12F7DE7A4FBD02851C2FB632864165FCA4920 46548.pygtex)) [358] (./Tutorial/chapter_testing.tex Chapter 21. 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LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (374 pages, 3024630 bytes). Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2023-11-01> L3 programming layer <2023-11-09> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. 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[9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. 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Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2023-11-01> L3 programming layer <2023-11-09> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information) Output written on biopdb_faq.pdf (15 pages, 165504 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2023-11-01> L3 programming layer <2023-11-09> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information) Output written on biopdb_faq.pdf (15 pages, 165504 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/<>/Doc' make[1]: Leaving directory '/<>' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online GraphicsBitmaps raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p "3.12 3.11" --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:310: set -e; \ mkdir -p /<>/.pybuild/cpython3_3.12/build/home; \ mkdir -p /<>/.pybuild/cpython3_3.12/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/.pybuild/cpython3_3.12/build/Doc; \ cp -a Doc/Tutorial /<>/.pybuild/cpython3_3.12/build/Doc; \ cp -a Doc/examples /<>/.pybuild/cpython3_3.12/build/Doc; \ cp -a Tests /<>/.pybuild/cpython3_3.12/build; \ cd /<>/.pybuild/cpython3_3.12/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/.pybuild/cpython3_3.12/build/home python3.12 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Align_Alignment ... ok test_Align_a2m ... ok test_Align_bed ... ok test_Align_bigbed ... ok test_Align_bigmaf ... ok test_Align_bigpsl ... ok test_Align_clustal ... ok test_Align_emboss ... ok test_Align_exonerate ... ok test_Align_fasta ... ok test_Align_hhr ... ok test_Align_maf ... ok test_Align_mauve ... ok test_Align_msf ... ok test_Align_nexus ... ok test_Align_phylip ... ok test_Align_psl ... ok test_Align_sam ... ok test_Align_stockholm ... ok test_Align_tabular ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_EmbossPrimer ... ok test_Entrez ... /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/__init__.py:694: UserWarning: Email address is not specified. To make use of NCBI's E-utilities, NCBI requires you to specify your email address with each request. As an example, if your email address is A.N.Other@example.com, you can specify it as follows: from Bio import Entrez Entrez.email = 'A.N.Other@example.com' In case of excessive usage of the E-utilities, NCBI will attempt to contact a user at the email address provided before blocking access to the E-utilities. warnings.warn( ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_GenomeDiagram ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_CEAligner ... ok test_PDB_DSSP ... ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path test_PDB_Polypeptide ... ok test_PDB_QCSuperimposer ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_Selection ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:549: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... /<>/.pybuild/cpython3_3.12/build/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /<>/.pybuild/cpython3_3.12/build/Bio/Seq.py:2779: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/__init__.py:612: BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA) warnings.warn( /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/__init__.py:678: BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA) warnings.warn( ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.a2m docstring test ... ok Bio.Align.bed docstring test ... ok Bio.Align.bigbed docstring test ... ok Bio.Align.bigmaf docstring test ... ok Bio.Align.bigpsl docstring test ... ok Bio.Align.clustal docstring test ... ok Bio.Align.emboss docstring test ... ok Bio.Align.exonerate docstring test ... ok Bio.Align.fasta docstring test ... ok Bio.Align.hhr docstring test ... ok Bio.Align.interfaces docstring test ... ok Bio.Align.maf docstring test ... ok Bio.Align.mauve docstring test ... ok Bio.Align.msf docstring test ... ok Bio.Align.nexus docstring test ... ok Bio.Align.phylip docstring test ... ok Bio.Align.psl docstring test ... ok Bio.Align.sam docstring test ... ok Bio.Align.stockholm docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.Align.tabular docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.PDBData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ccealign docstring test ... ok Bio.PDB.cealign docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.qcprot docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 551 tests in 358.856 seconds Skipping any tests requiring internet access Python version: 3.12.1 (main, Dec 8 2023, 16:20:54) [GCC 13.2.0] Operating system: posix linux I: pybuild base:310: set -e; \ mkdir -p /<>/.pybuild/cpython3_3.11/build/home; \ mkdir -p /<>/.pybuild/cpython3_3.11/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/.pybuild/cpython3_3.11/build/Doc; \ cp -a Doc/Tutorial /<>/.pybuild/cpython3_3.11/build/Doc; \ cp -a Doc/examples /<>/.pybuild/cpython3_3.11/build/Doc; \ cp -a Tests /<>/.pybuild/cpython3_3.11/build; \ cd /<>/.pybuild/cpython3_3.11/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/.pybuild/cpython3_3.11/build/home python3.11 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Align_Alignment ... ok test_Align_a2m ... ok test_Align_bed ... ok test_Align_bigbed ... ok test_Align_bigmaf ... ok test_Align_bigpsl ... ok test_Align_clustal ... ok test_Align_emboss ... ok test_Align_exonerate ... ok test_Align_fasta ... ok test_Align_hhr ... ok test_Align_maf ... ok test_Align_mauve ... ok test_Align_msf ... ok test_Align_nexus ... ok test_Align_phylip ... ok test_Align_psl ... ok test_Align_sam ... ok test_Align_stockholm ... ok test_Align_tabular ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_EmbossPrimer ... ok test_Entrez ... /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/__init__.py:694: UserWarning: Email address is not specified. To make use of NCBI's E-utilities, NCBI requires you to specify your email address with each request. As an example, if your email address is A.N.Other@example.com, you can specify it as follows: from Bio import Entrez Entrez.email = 'A.N.Other@example.com' In case of excessive usage of the E-utilities, NCBI will attempt to contact a user at the email address provided before blocking access to the E-utilities. warnings.warn( ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_CEAligner ... ok test_PDB_DSSP ... ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path test_PDB_Polypeptide ... ok test_PDB_QCSuperimposer ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_Selection ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1241: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:549: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... /<>/.pybuild/cpython3_3.11/build/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /<>/.pybuild/cpython3_3.11/build/Bio/Seq.py:2779: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/__init__.py:612: BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA) warnings.warn( /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/__init__.py:678: BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA) warnings.warn( ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.a2m docstring test ... ok Bio.Align.bed docstring test ... ok Bio.Align.bigbed docstring test ... ok Bio.Align.bigmaf docstring test ... ok Bio.Align.bigpsl docstring test ... ok Bio.Align.clustal docstring test ... ok Bio.Align.emboss docstring test ... ok Bio.Align.exonerate docstring test ... ok Bio.Align.fasta docstring test ... ok Bio.Align.hhr docstring test ... ok Bio.Align.interfaces docstring test ... ok Bio.Align.maf docstring test ... ok Bio.Align.mauve docstring test ... ok Bio.Align.msf docstring test ... ok Bio.Align.nexus docstring test ... ok Bio.Align.phylip docstring test ... ok Bio.Align.psl docstring test ... ok Bio.Align.sam docstring test ... ok Bio.Align.stockholm docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.Align.tabular docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.PDBData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ccealign docstring test ... ok Bio.PDB.cealign docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.qcprot docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 551 tests in 358.047 seconds Skipping any tests requiring internet access Python version: 3.11.7 (main, Dec 8 2023, 14:22:46) [GCC 13.2.0] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-ewYInL9H mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install install -m0755 -d /<>/python-biopython-1.81\+dfsg/debian/tmp pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /<>/python-biopython-1.81\+dfsg/debian/tmp I: pybuild base:310: /usr/bin/python3.12 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.12 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.12/build/BioSQL/DBUtils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.12/build/BioSQL/BioSeqDatabase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.12/build/BioSQL/BioSeq.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.12/build/BioSQL/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.12/build/BioSQL/Loader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/BioSeqDatabase.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/BioSeq.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/DBUtils.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/Loader.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/other_trees.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/tree1.nwk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_bigmaf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/README.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/triple_sff.idx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/paired.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/greek.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_NCBI_BLAST_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Wise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_fasta_m10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Raf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.12/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.12/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Wise creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00165.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00432.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00107.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00488.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00159.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00546.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.12/build/Tests/CDAO/test.cdao -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_Dice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Phylo_CDAO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_internal_coords.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Phylo_NeXML.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_GenBank.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_SASA.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/common_BioSQL_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Des.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.12/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.12/build/Tests/BioSQL/cor6_6.db -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.12/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.12/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.12/build/Tests/.coveragerc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Compass.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.12/build/Tests/Xdna/sample-b.xdna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.12/build/Tests/Xdna/sample-a.xdna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.12/build/Tests/Xdna/sample-c.xprt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_bigpsl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_NMR.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_CEAligner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Dialign_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/PhyloXML/apaf.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/PhyloXML/distribution.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/PhyloXML/example.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/PhyloXML/made_up.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/PhyloXML/bcl_2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.12/build/Tests/ExtendedPhylip/primates.phyx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.12/build/Tests/test_KGML_graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.12/build/Tests/SnapGene/sample-d.dna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.12/build/Tests/SnapGene/sample-e.dna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.12/build/Tests/SnapGene/pFA-KanMX4.dna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.12/build/Tests/SnapGene/sample-f.dna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.12/build/Tests/test_GraphicsGeneral.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/requires_internet.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/clusterbuster.pfm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/minimal_test.meme -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/fourcolumns.pfm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/meme.adh.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/fourrows.pfm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/SRF.pfm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/alignace.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/meme.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/clusterbuster.pfm.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/transfac.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/abdb.xms -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/REB1.pfm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/MA0056.1.transfac -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/Arnt.sites -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.12/build/Tests/test_KeyWList.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_DSSP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Phylo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/bug2453.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/unfinished.idx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_test.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/length_coords_mismatch.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/bundle_without_target.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/bundle_without_target.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/humor.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/cnksr3.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_test.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/corrupt.idx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/wrong_version.idx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/MAF/invalid.idx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.12/build/Tests/test_HMMGeneral.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_Disordered.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_EMBL_unittest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_UniProt_GOA.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_bigbed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/wnts.xml.bgz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mock_disco.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/README.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mock_wait.html -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mock_orchid.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mock_pcr.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/wnts.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mirna.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mock_short_result.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mirna.tab -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mock_short_empty.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/mock_actin.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PAML_baseml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_pairwise_aligner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Pathway.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_KGML_nographics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_TCoffee_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_PDBParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_Insdc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_AbiIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_File.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.12/build/Tests/UniGene/Hs.2.data -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.12/build/Tests/UniGene/Eca.1.2425.data -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.12/build/Tests/UniGene/Mdm_partial.data -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.12/build/Tests/test_GraphicsChromosome.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.12/build/Tests/UniProt/goa_human_sample.gpi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.12/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.12/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.12/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.12/build/Tests/UniProt/goa_yeast.gaf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_KDTree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/canFam2.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/separate.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/equCab1.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.xmfa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/separate.xmfa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/separate.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/mm9.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/simple_short.xmfa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.xmfa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_PdbIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_GenomeDiagram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_features.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Entrez_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Blast_Record.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_ExPASy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/pig.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/ecoli.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/bsubtilis.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/hg38.chrom.sizes -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/bsubtilis.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/cow.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/pig.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/ecoli.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/Align/cow.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Mafft_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/bad_results.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/gen_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/longnames.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/alignment.phylip -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/lysin.trees -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/bad.tree -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/species.tree -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/README.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/bad1.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/bad3.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/bad2.ctl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/species.tree -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.12/build/Tests/test_codonalign.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_sam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_Superimposer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.12/build/Tests/Enzymes/lipoprotein.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.12/build/Tests/Enzymes/valine.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.12/build/Tests/Enzymes/lactate.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.12/build/Tests/Enzymes/proline.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.12/build/Tests/NBRF/DMA_nuc.pir -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.12/build/Tests/NBRF/clustalw.pir -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.12/build/Tests/NBRF/B_nuc.pir -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.12/build/Tests/NBRF/DMB_prot.pir -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.12/build/Tests/NBRF/Cw_prot.pir -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_mysql_connector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_prosite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/pairwise2_testCases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Phylo_matplotlib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PAML_codeml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.12/build/Tests/msf/W_prot.msf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.12/build/Tests/msf/DOA_prot.msf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.12/build/Tests/test_kNN.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqUtils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/map00950.rea -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/ko03070.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.irregular -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.4letter -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/map03070.png -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/ko00010.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/compound.sample -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/ko01100.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/map01100.png -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/ko00253.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/compound.irregular -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.sample -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/gene.sample -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.new -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDBList.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/out.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/test.fsa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/fake.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/3100.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/empty.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/no_smpl1.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/test_data -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/310.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/Abi/3730.ab1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Cla.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/InterProScan copying /<>/.pybuild/cpython3_3.12/build/Tests/InterProScan/test_001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/InterProScan copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_hhr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_NCBITextParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PQR.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Chi2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_QualityIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Astral.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.12/build/Tests/Cluster/cyano.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.12/build/Tests/Cluster/README -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_pairwise2_no_C.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.12/build/Tests/Phd/phd1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.12/build/Tests/Phd/phd2 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.12/build/Tests/Phd/phd_454 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.12/build/Tests/Phd/phd_solexa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.12/build/Tests/test_LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Emboss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/seq_tests_common.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Clustalw_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam4.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam1.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam7.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam3.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam3.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam2.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam5.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/globins45.ali -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/simple.sth -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/example.sth -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam9.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/cath2.sth -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam6.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam8.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/funny.sth -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam1.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam4.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/cath3.sth -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam5.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/cath1.sth -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam2.seed.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/README.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_exonerate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/raftest.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/testDom.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.12/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Uniprot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta4.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/meta.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta7.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta6.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta3.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/meta9.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta8.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.12/build/Tests/MetaTool/meta2.out -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.12/build/Tests/NMR/noed.xpk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.12/build/Tests/NMR/out_example.xpk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SwissProt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_KEGG.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_Xdna.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CodonUsage copying /<>/.pybuild/cpython3_3.12/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CodonUsage copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Phd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_vectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl1.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/pro2.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/pro1.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/pro4.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl3.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/drosophilla.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/egfr_pro.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl2.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/pro5.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl5.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/egfr_id -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/pro3.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/adh.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl4.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/codonalign/egfr_nucl.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.12/build/Tests/test_translate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_Gck.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/interlaced.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/reference_dna2.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/six.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/three.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/random.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/horses.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/hennigian.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/five.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/one.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/four.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/horses.tree -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/reference_dna.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/sequential2.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/sequential.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/two.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/Phylip/interlaced2.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.12/build/Tests/test_phyml_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.12/build/Tests/phenotype/Plate.json -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.12/build/Tests/phenotype/SmallPlate_2.json -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.12/build/Tests/phenotype/BadPlate.json -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.12/build/Tests/phenotype/Plates.csv -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.12/build/Tests/phenotype/Plate_2.json -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.12/build/Tests/phenotype/SmallPlate.json -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.12/build/Tests/phenotype/SmallPlates.csv -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary7.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/biosample.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/nucleotide2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/journals.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink8.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink4.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/nucleotide1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch4.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/epost2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch6.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/efetch_pmc.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed7.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary6.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/epost1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/efetch_schemas.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink6.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch8.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/ncbi_mim.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink3.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/taxonomy.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary4.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed3.html -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/egquery2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed4.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/espell.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo3.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/epost3.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink7.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed6.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch5.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed5.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/protein.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/egquery1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary5.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink5.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo4.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/elink2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary8.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch7.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch3.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary3.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary9.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Dom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_motifs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/DD231055_edited.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/xx_after_co.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/Human_contigs.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/DD231055_edited2.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/embl_with_0_line.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/101ma_no_coords.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/U87107.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/DS830848.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/RepBase23.02.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/location_wrap.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/SC10H5.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/A04195.imgt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/TRBG361.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/patents.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/AAA03323.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/epo_prt_selection.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.12/build/Tests/EMBL/AE017046.embl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/FSSP copying /<>/.pybuild/cpython3_3.12/build/Tests/FSSP/1cnv.fssp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/FSSP copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Ace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_Alignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/biosql.ini.appveyor -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_maf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_bed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_Selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_dual.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/GSM645.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_family.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/GSM691.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_series.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/GSM804.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/GSM700.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/GSE16.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_platform.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_affy.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SffIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Hie.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Prank_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_PDBIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/common_BioSQL.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_phenotype_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_RCSBFormats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_BWA_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_seq.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Enzyme.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/example_dos.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/example.fastq.gz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/tricky.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/example_dos.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_space.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_long_qual.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_double_qual.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_diff_ids.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/example.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_escape.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_double_seq.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/example.qual -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/example.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/example.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_tab.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_faked.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_93.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_tabs.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_null.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_no_qual.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_short_qual.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_example.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_del.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_faked.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_vtab.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_faked.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_spaces.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/zero_length.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.12/build/Tests/search_tests_common.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_TogoWS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsa2OmpEa copying /<>/.pybuild/cpython3_3.12/build/Tests/test_KGML_graphics_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/codonposset.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/int_node_labels.nwk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/bats.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/test.new -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/test_Nexus_input.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_QCSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_prodoc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Probcons_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_UniGene.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/biosql.ini.sample -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_align_substitution_matrices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_NACCESS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_exonerate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/4CUP.mmtf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1LCD.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/7CFN.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/4Q9R_min.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.xyzr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1LCD.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2XHE.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2OFG.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/4CUP.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/3JQH.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/Wilke_RASA.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/disordered.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/Ahmad_RASA.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG_noheader.dssp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1SSU_mod.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1SSU_mod.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/d256ba_.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/Sander_RASA.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/occupancy.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/4ZHL.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1MOM_min.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/a_structure.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/ions.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/4ZHL.mmtf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/lib_10_z_5.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/alignment_file.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.asa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.rsa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG.dssp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1AS5.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/Miller_RASA.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/6WQA.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2XHE.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/header.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/2n0n_M1.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/7CFN_aligned.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/a_structure.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1A7G.cif -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/7DDO.pdb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.mmtf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blat_psl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_CAPS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_pairwise2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.12/build/Tests/Gck/artificial.gck -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/upgma.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/nj.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/test.log -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/trees.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/majority_ref.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/msa.phy -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/pars3.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/nj_min.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/strict_refs.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/adam_refs.tre -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.12/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.12/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.12/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_stockholm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.long.2bit -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.littleendian.2bit -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.bigendian.2bit -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/meta_types.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/edgelabels.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/meta_taxa.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/nexml.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/characters.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/timetree.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/treebase-record.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/sets.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/trees.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/tolweb.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/trees-uris.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/phenoscape.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.12/build/Tests/NeXML/taxa.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/KF527485.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/EU851978_output.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_000932.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/pBAD30.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.tsv -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/HM138502.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/one_of.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/KF527485_output.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NT_019265.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/iro.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/noref.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_product.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/empty_version.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/no_end_marker.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/empty_accession.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/protein_refseq.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.fna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/negative_location.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/gbvrl1_start.seq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/cor6_6.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.faa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/tsa_acropora.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/arab1.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/origin_line.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/tls_KDHP01000000.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_structured_comment.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/EU851978.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/protein_refseq2.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/1MRR_A.gp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/blank_seq.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/GU949562.1.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_000932.faa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/dbsource_wrap.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/no_origin_no_end.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/DS830848.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/pri1.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.ffn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/HM138502_output.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/GenBank/extra_keywords.gb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.12/build/Tests/test_NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.12/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.12/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.12/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.12/build/Tests/Nib/test_odd_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.12/build/Tests/Nib/test_odd_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.12/build/Tests/Nib/test_even.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.12/build/Tests/Nib/test_even_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.12/build/Tests/Nib/test_even_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.12/build/Tests/Nib/test_odd.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output005.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output010.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output015.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/phlox.nu -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/tc_out.msf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/sweetpea.nu -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output009.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/centaurea.nu -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output001.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/aster.pro -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output011.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/rosemary.pro -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/dups.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/aster_no_wrap.pro -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/rose.pro -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/f001 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/protein_m8CC.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output006.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output007.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/nucleotide_lib.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/protein_lib.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output004.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/f002 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output012.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/flowers.pro.gz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output016.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/f003 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/lavender.nu -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/nucleotide_m8CC.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/nucleotide_m8CB.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output002.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output013.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output014.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/protein_m8CB.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/loveliesbleeding.pro -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output008.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/lupine.nu -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/README -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/fa01 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/output003.m10 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/elderberry.nu -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.12/build/Tests/Fasta/wisteria.nu -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.12/build/Tests/NeuralNetwork/repeat.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.12/build/Tests/NeuralNetwork/enolase.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.12/build/Tests/output.best.nex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_mauve.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_emboss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Consensus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Muscle_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_SeqXML.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.12/build/Tests/SubsMat/aaDistrib.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.12/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.12/build/Tests/SubsMat/protein_freq.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.12/build/Tests/SubsMat/protein_count.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.12/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.12/build/Tests/SubsMat/redAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.12/build/Tests/Affy/affy_v3_example.CEL -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.12/build/Tests/Affy/affy_v4_example.CEL -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.12/build/Tests/test_NCBI_qblast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/cds_forward.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/water.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/NirK_full.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse1.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse2.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/needle_overhang.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/bac_find.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/matcher_pair.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse4.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/needle_nobrief_multiple.pair -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/no_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/matcher_simple.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/needle.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/water2.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse3.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/cds_reverse.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/alignret.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/needle_asis.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/short.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/internal_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/NirK.primer3 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/Emboss/bac_find.psearch -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_MMCIFIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.12/build/Tests/Ace/seq.cap.ace -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.12/build/Tests/Ace/consed_sample.ace -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.12/build/Tests/Ace/contig1.ace -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Phylo_networkx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_MauveIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_ClustalOmega_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_CodonTable.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_multiple_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_trans_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_affine_local_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/README.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cdna2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_est2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_trans_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cdna2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ner_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_affine_local_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cigar_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_dna2protein_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ner_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_dna2protein_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_cigar_fshifts2.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_est2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_tabular.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Saf copying /<>/.pybuild/cpython3_3.12/build/Tests/Saf/saf1.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Saf copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_NibIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/muscle.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/promals3d.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/temp horses.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/kalign.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/hedgehog.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/clustalw.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/protein.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/msaprobs.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/msaprobs.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/probcons.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/muscle.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/muscle.a2m -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/kalign.a2m -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/clustalw.a2m -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/probcons.a2m -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/clustalw.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/probcons.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/msaprobs.a2m -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/kalign.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.12/build/Tests/Clustalw/odd_consensus.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.12/build/Tests/Registry/EDD_RAT.dat -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.12/build/Tests/Registry/bt001 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.12/build/Tests/Registry/seqs.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.12/build/Tests/test_HMMCasino.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.12/build/Tests/Medline/pubmed_result3.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.12/build/Tests/Medline/pubmed_result1.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.12/build/Tests/Medline/pubmed_result2.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.12/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.12/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.12/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.12/build/Tests/Compass/comtest2 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.12/build/Tests/Compass/comtest1 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_msf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/scatter_test_1.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/spiral_test.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/map03070_colors.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_circular.svg -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/map01100_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/simple_bar.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_linear.svg -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/organism.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/map03070_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/labels_default_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/organism.eps -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/labels_default.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_linear.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/scatter_test_7.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_circular.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/multi_bar.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/map01100_original.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/map01100_widths.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigils.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/square_test.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/map03070_original.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/README -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/organism.svg -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/line_graph_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/random_organism.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/line_graph.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_clustal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_SMCRA.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_motifs_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_phylip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/README.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/allx.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.12/build/Tests/test_GraphicsDistribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Application.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_phenotype.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_MafIO_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_a2m.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_legacy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PQR copying /<>/.pybuild/cpython3_3.12/build/Tests/PQR/1A80.pqr -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PQR copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_SnapGene.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PAML_yn00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Medline.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_KEGG_online.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed9.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed6.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_002.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_001.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed6.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/fasta_34.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed8.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed3.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bigPsl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/README.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed5.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_003.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed4.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_002.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/hg38.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/balAcu1.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed4.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed5.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_002.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bigbed_extended.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed7.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed7.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed3.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed9.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_35_001.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bigbedtest.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed8.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_002.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_004.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed12.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bigbedtest.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/bed12.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_002.psl.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/rna.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_005.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_35_002.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/mirna.pslx -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/dna.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.bb -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/CAG33136.1.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.bed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SVDSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Restriction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_convert.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_bgzf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.gff -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P68308.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P04439.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P62258.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P60137.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.rdf -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/keywlist2.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp013 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P0A186.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/keywlist.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp015 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q13639.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q13639.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q7Z739.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P0CK95.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/F2CXE6.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q13454.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P97881.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/O23729.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/H2CNN8.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp012 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/uni003 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P39896.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp016 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/R5HY77.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/uni001 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/F2CXE6.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P60904.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/uni002 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/H2CNN8.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P16235.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.list -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/P84001.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/README -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Tests/SwissProt/O95832.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/c3space.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/big.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/c2space.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/c2line.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/c3line.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/haplo2.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/README -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/haplo3.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/PopGen/haplo.gen -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.12/build/Tests/test_EmbossPrimer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/seq_tests_common.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_align.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_TCoffee_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NCBI_qblast.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_CEAligner.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GenomeDiagram.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Medline.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KGML_graphics.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_HMMCasino.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Wise.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/search_tests_common.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KeyWList.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_MarkovModel.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Cla.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_SMCRA.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_Gck.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PQR.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Disordered.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_NeXML.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/requires_internet.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_QCSuperimposer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_maf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Probcons_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_sam.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_EmbossPrimer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_samtools_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SwissProt.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bed.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise_aligner.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NMR.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_write.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_emboss.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_prosite.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Nexus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NCBIXML.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_exonerate.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_a2m.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Entrez_parser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Clustalw_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PAML_yn00.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqUtils.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Dialign_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_kNN.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_convert.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ColorSpiral.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_HMMGeneral.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_phyml_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Hie.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_KDTree.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_NACCESS.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BWA_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Entrez_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Blast_Record.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bigmaf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_DSSP.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_align_substitution_matrices.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GraphicsChromosome.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Dice.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_UniGene.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_prodoc.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Selection.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_EMBL_unittest.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Ace.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignInfo.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_networkx.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise2.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_translate.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_clustal.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GraphicsDistribution.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Prank_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_CAPS.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Consensus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_write.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_CodonTable.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_MafIO_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_File.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_stockholm.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_motifs.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_phylip.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_TreeConstruction.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NaiveBayes.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/common_BioSQL_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Raf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_Alignment.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_RCSBFormats.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Tutorial.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/common_BioSQL.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_geo.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_UniProt_GOA.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Residues.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_phenotype.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_hhr.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Des.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_bgzf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/pairwise2_testCases.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Scop.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_phenotype_fit.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_internal_coords.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqRecord.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Compass.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Astral.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_legacy.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ExPASy.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_model.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_mauve.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqFeature.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_features.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_seq.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_psl.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_motifs_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Fasttree_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bigpsl.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_cellosaurus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise2_no_C.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KGML_nographics.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_codonalign.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PAML_baseml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SffIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_LogisticRegression.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Entrez.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Exposure.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PhyloXML.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Muscle_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Superimposer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Affy.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Mafft_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phd.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Uniprot.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ProtParam.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_fasta.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Seq_objs.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KEGG.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Chi2.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Restriction.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Cluster.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_SASA.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KGML_graphics_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Dom.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Emboss.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_msf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SVDSuperimposer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PAML_codeml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_PDBParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_vectors.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Pathway.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_TogoWS.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDBList.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Application.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_PDBIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GraphicsGeneral.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_CDAO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_tabular.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GenBank.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KEGG_online.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_PSEA.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_nexus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Enzyme.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bigbed.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NCBITextParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/pvuii.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/foki.htm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/crei.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/cac81.htm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/bamii.htm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/taqi.htm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/cac81.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/taqi.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/bamii.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/foki.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/crei.htm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/Rebase/pvuii.htm -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Fasttree_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1_header.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/bam1.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1_header.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/bam2.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/readme.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/bam1_sorted.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/sam1.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1.fa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/sam2.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1.sam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/bam2_sorted.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1_refresh.bam -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Entrez_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.12/build/Tests/GFF/multi.fna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001802x.fna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001802.fna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001802lc.fna -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001422.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.12/build/Tests/SeqXML/corrupt_example2.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.12/build/Tests/SeqXML/global_species_example.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.12/build/Tests/SeqXML/rna_example.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.12/build/Tests/SeqXML/corrupt_example1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.12/build/Tests/SeqXML/dna_example.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.12/build/Tests/SeqXML/protein_example.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsa5C3N2h copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Scop.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Entrez.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Seq_objs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_PSEA.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_pairwise_alignment_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Affy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_ProtParam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_PDB_Exposure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_samtools_tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/test_Align_psl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/Tests/output.best.fas -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /<>/.pybuild/cpython3_3.12/build/tree1.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_graphics.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_searchio.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pdb.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_testing.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_searchio.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_appendix.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_learning.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cluster.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_testing.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cluster.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pdb.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_appendix.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_align.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seqio.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_motifs.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seqio.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phylo.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_entrez.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_graphics.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_contributing.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_popgen.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_entrez.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_popgen.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_kegg.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_kegg.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_blast.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_align.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_learning.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_contributing.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_blast.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phylo.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_introduction.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_introduction.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_motifs.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/ec_5.4.2.2.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/www_blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/fasta_iterator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/ACT_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/clustal_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/Plates.csv -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/simple.dnd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/fasta_dictionary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/nmr/noed.xpk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/nmr/simplepredict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/opuntia.dnd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/PF05371_seed.sth -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/beta.faa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/swissprot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/my_blat.psl -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/alpha.faa -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/m_cold.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/my_blast.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk.gz -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/examples/opuntia.fasta -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.12/build/Doc/Tutorial.tex -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc copying /<>/.pybuild/cpython3_3.12/build/other_trees.xml -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.12/build/Bio/Wise/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.12/build/Bio/Wise/psw.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.12/build/Bio/Wise/dnal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Wise/__pycache__/dnal.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Wise/__pycache__/psw.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Wise/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/hit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/hsp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/query.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/hit.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/_base.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/query.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlatIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/BlatIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/_utils.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/FastaIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application copying /<>/.pybuild/cpython3_3.12/build/Bio/Application/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Application/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/pfm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/alignace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/_pwm.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/__pycache__/db.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/xms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/meme.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/applications/_xxmotif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/applications/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/matrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/thresholds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/transfac.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/xms.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/alignace.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/thresholds.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/mast.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/pfm.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/meme.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/minimal.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/matrix.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/clusterbuster.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/transfac.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/mast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.12/build/Bio/motifs/clusterbuster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/ParseBlastTable.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/NCBIWWW.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/Applications.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/NCBIWWW.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/Applications.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/Record.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/NCBIXML.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Blast/Record.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.12/build/Bio/kNN.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene copying /<>/.pybuild/cpython3_3.12/build/Bio/UniGene/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/UniGene/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS copying /<>/.pybuild/cpython3_3.12/build/Bio/TogoWS/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/TogoWS/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.12/build/Bio/UniProt/GOA.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.12/build/Bio/UniProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/UniProt/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/UniProt/__pycache__/GOA.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/tabular.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/bigmaf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/a2m.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/interfaces.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/_aligners.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/mauve.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/msf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/sam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/hhr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/stockholm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/maf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/bigpsl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/phylip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_TCoffee.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Mafft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Prank.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Dialign.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Clustalw.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Probcons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Muscle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Prank.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_MSAProbs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/exonerate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/MEGABLAST -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/FENG -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLASTN -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/HOXD70 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/RAO -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/TRANS -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/STR -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/JONES -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLASTP -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/bigbed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/psl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/clustal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/a2m.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bigbed.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/mauve.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/clustal.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bigpsl.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bigmaf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/msf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bed.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/nexus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/interfaces.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/stockholm.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/exonerate.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/fasta.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/psl.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/hhr.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/emboss.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/AlignInfo.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/sam.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/maf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/phylip.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/tabular.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/emboss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.12/build/Bio/Align/bed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/codeml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_paml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/baseml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/yn00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/chi2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/NeXML.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/CDAO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/NeXMLIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/NewickIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/_Raxml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/_Phyml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Consensus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/CDAOIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PhyloXMLIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/Newick.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/BaseTree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/_cdao_owl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NeXML.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/_utils.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NewickIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/CDAO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NexusIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/BaseTree.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/_io.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/Consensus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/Newick.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/PhyloXML.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/CDAOIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Phylo/PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.12/build/Bio/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/StockholmIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/MauveIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/MsfIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/Interfaces.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/MauveIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/NexusIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/FastaIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/MsfIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/MafIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/AlignIO/MafIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer copying /<>/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Map/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Map/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/REST.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/__pycache__/REST.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/KEGG/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/cpairwise2module.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /<>/.pybuild/cpython3_3.12/build/Bio/bgzf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.12/build/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.12/build/Bio/Cluster/cluster.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.12/build/Bio/Cluster/cluster.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.12/build/Bio/Cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Cluster/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Cluster/clustermodule.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/Prodoc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/Prosite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/ScanProsite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/Prosite.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/Prodoc.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/Enzyme.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/ExPASy/Enzyme.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.12/build/Bio/LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/Dom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/Raf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/Cla.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/Des.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/Residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Des.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Raf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Hie.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Dom.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Residues.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Cla.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SCOP/Hie.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/ProtParam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/CheckSum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/ProtParamData.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/lcc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/CodonUsage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/lcc.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/MeltingTemp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.12/build/Bio/NMR/NOEtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.12/build/Bio/NMR/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/NMR/__pycache__/NOEtools.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/NMR/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/NMR/__pycache__/xpktools.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/NMR/xpktools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/codonalignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/codonseq.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/__pycache__/codonseq.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/codonalign/__pycache__/codonalignment.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.12/build/Bio/phenotype/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.12/build/Bio/phenotype/phen_micro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/phenotype/__pycache__/phen_micro.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/phenotype/__pycache__/pm_fitting.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/phenotype/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/phenotype/pm_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/XSDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/XSDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/phrase.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/references.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-references1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isodia.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/chars.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/section.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-section1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isopub.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/elink.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/math.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/link.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-math1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/format.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/epost.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-list1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/list.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-common1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isobox.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/modules.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/esummary_gene.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-display1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/display.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/para.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-para1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-format1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/notat.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isonum.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isotech.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/common.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-link1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/xhtml-table-1.mod -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/Parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/__pycache__/Parser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Entrez/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/Trainer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/DynamicProgramming.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/Utilities.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/MarkovModel.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/Utilities.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/Trainer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/PDBData.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/SCOPData.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/IUPACData.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/CodonTable.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/CodonTable.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/SCOPData.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/IUPACData.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/PDBData.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo copying /<>/.pybuild/cpython3_3.12/build/Bio/Geo/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Geo/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Geo/__pycache__/Record.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Geo/Record.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Alphabet copying /<>/.pybuild/cpython3_3.12/build/Bio/Alphabet/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Alphabet copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/Trees.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/Nodes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/StandardData.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/cnexus.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/Trees.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/Nodes.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/StandardData.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/Nexus.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Nexus/Nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/PDBList.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Dice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/internal_coords.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/HSExposure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmcifio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/NeighborSearch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/AbstractPropertyMap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/vectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/SCADIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Entity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/ccealignmodule.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/cealign.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/StructureBuilder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/qcprot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/kdtrees.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/PSEA.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Superimposer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/ic_rebuild.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/PICIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/ResidueDepth.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/DSSP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/SASA.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/ic_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/NACCESS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/PDBIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/NACCESS.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Chain.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Structure.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Superimposer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/ic_data.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Residue.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/ResidueDepth.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PSEA.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/mmcifio.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/vectors.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Atom.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Dice.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/DSSP.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/cealign.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/internal_coords.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBExceptions.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/HSExposure.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Model.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/qcprot.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBList.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/NeighborSearch.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Polypeptide.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Selection.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Entity.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/SCADIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/StructureBuilder.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PICIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/StructureAlignment.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/SASA.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/MMCIFParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/ic_rebuild.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/FragmentMapper.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/mmtfio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/PDBParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/PDBExceptions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.12/build/Bio/PDB/Selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/Scanner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/Scanner.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/Record.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/utils.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/GenBank/Record.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/_bwa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/_samtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Ace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/Phd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/__pycache__/Ace.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/__pycache__/Phd.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Sequencing/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.12/build/Bio/Affy/CelFile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.12/build/Bio/Affy/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Affy/__pycache__/CelFile.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Affy/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/Primer3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/PrimerSearch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/Applications.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/Primer3.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/Applications.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /<>/.pybuild/cpython3_3.12/build/Bio/NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /<>/.pybuild/cpython3_3.12/build/Bio/_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /<>/.pybuild/cpython3_3.12/build/Bio/Seq.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline copying /<>/.pybuild/cpython3_3.12/build/Bio/Medline/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Medline/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass copying /<>/.pybuild/cpython3_3.12/build/Bio/Compass/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Compass/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/Comparative.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/Distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/KGML_vis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/DisplayRepresentation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/Distribution.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/Comparative.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/KGML_vis.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Graphics/BasicChromosome.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS copying /<>/.pybuild/cpython3_3.12/build/Bio/CAPS/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/CAPS/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/SeqXmlIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/PhdIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/_twoBitIO.c -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/PdbIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/AceIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/SffIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/SnapGeneIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/GckIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/SwissIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/PirIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/NibIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/TabIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/UniprotIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/IgIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/QualityIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/PhdIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/Interfaces.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/IgIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/AbiIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SffIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/TabIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/FastaIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/AceIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SwissIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/QualityIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/PirIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/PdbIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/_index.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/NibIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/GckIO.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/AbiIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.12/build/Bio/SeqIO/XdnaIO.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Bio/SwissProt/KeyWList.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.12/build/Bio/SwissProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SwissProt/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/SwissProt/__pycache__/KeyWList.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/PrintFormat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/Restriction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/Restriction.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/PrintFormat.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/FileParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/Controller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/EasyController.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/SeqRecord.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/_utils.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/bgzf.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/MarkovModel.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/Seq.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/NaiveBayes.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/pairwise2.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/SeqFeature.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/LogisticRegression.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/MaxEntropy.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/kNN.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/__pycache__/File.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/File.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/Graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/Pathway/__pycache__/__init__.cpython-312.pyc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/__pycache__ copying /<>/.pybuild/cpython3_3.12/build/Bio/MaxEntropy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /<>/.pybuild/cpython3_3.12/build/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /<>/.pybuild/cpython3_3.12/build/Bio/pairwise2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.config creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/matplotlib creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.cache creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.cache/matplotlib copying /<>/.pybuild/cpython3_3.12/build/home/.cache/matplotlib/fontlist-v330.json -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.cache/matplotlib creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/methods creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/mcoffee creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/plugins creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/plugins/linux creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/cache byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/Loader.py to Loader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bigmaf.py to test_Align_bigmaf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Wise.py to test_Wise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Compass.py to test_Compass.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bigpsl.py to test_Align_bigpsl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NMR.py to test_NMR.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_CEAligner.py to test_PDB_CEAligner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/requires_internet.py to requires_internet.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bigbed.py to test_Align_bigbed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_nexus.py to test_Align_nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_File.py to test_File.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_sam.py to test_Align_sam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_prosite.py to test_prosite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_geo.py to test_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_kNN.py to test_kNN.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_hhr.py to test_Align_hhr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PQR.py to test_PQR.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_align.py to test_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phd.py to test_Phd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_translate.py to test_translate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_motifs.py to test_motifs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Ace.py to test_Ace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_Alignment.py to test_Align_Alignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_maf.py to test_Align_maf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bed.py to test_Align_bed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Selection.py to test_PDB_Selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_fasta.py to test_Align_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_seq.py to test_seq.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_QCSuperimposer.py to test_PDB_QCSuperimposer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_exonerate.py to test_Align_exonerate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_stockholm.py to test_Align_stockholm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_mauve.py to test_Align_mauve.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_emboss.py to test_Align_emboss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_tabular.py to test_Align_tabular.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_msf.py to test_Align_msf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_clustal.py to test_Align_clustal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_phylip.py to test_Align_phylip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Application.py to test_Application.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_a2m.py to test_Align_a2m.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Medline.py to test_Medline.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_PSEA.py to test_PDB_PSEA.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Affy.py to test_Affy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_psl.py to test_Align_psl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise/psw.py to psw.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Wise/dnal.py to dnal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_index.py to _index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/pfm.py to pfm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/alignace.py to alignace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/xms.py to xms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/meme.py to meme.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/minimal.py to minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/matrix.py to matrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/transfac.py to transfac.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/mast.py to mast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/Applications.py to Applications.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/Record.py to Record.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/kNN.py to kNN.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/tabular.py to tabular.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bigmaf.py to bigmaf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/a2m.py to a2m.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/interfaces.py to interfaces.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/mauve.py to mauve.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/msf.py to msf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/sam.py to sam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/hhr.py to hhr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/stockholm.py to stockholm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/fasta.py to fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/maf.py to maf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bigpsl.py to bigpsl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/phylip.py to phylip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/exonerate.py to exonerate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/nexus.py to nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bigbed.py to bigbed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/psl.py to psl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/clustal.py to clustal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/emboss.py to emboss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bed.py to bed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/_io.py to _io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/REST.py to REST.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/bgzf.py to bgzf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Des.py to Des.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/PDBData.py to PDBData.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/Record.py to Record.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Dice.py to Dice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Atom.py to Atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/vectors.py to vectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Entity.py to Entity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/cealign.py to cealign.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/qcprot.py to qcprot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Chain.py to Chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Model.py to Model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/SASA.py to SASA.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Residue.py to Residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Structure.py to Structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Selection.py to Selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/Record.py to Record.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/_utils.py to _utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Seq.py to Seq.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/_index.py to _index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/File.py to File.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/Bio/pairwise2.py to pairwise2.cpython-312.pyc running install_egg_info Copying biopython.egg-info to /<>/debian/tmp/usr/lib/python3.12/dist-packages/biopython-1.81.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:310: /usr/bin/python3 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /<>/debian/tmp/usr/lib/python3.11 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.11/build/BioSQL/DBUtils.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.11/build/BioSQL/BioSeqDatabase.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.11/build/BioSQL/BioSeq.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.11/build/BioSQL/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.11/build/BioSQL/Loader.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/DBUtils.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/Loader.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/BioSeq.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/BioSeqDatabase.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/other_trees.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages copying /<>/.pybuild/cpython3_3.11/build/tree1.nwk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_bigmaf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/README.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/triple_sff.idx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/paired.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/greek.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_model.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_NCBI_BLAST_tools.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Wise.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_fasta_m10.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Raf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.11/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.11/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Wise creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00165.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00432.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00107.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00488.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00159.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00546.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.11/build/Tests/CDAO/test.cdao -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_Dice.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Phylo_CDAO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_internal_coords.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Phylo_NeXML.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_GenBank.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_SASA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/common_BioSQL_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Des.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.11/build/Tests/BioSQL/cor6_6.db -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.11/build/Tests/.coveragerc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Compass.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-b.xdna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-a.xdna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-c.xprt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_bigpsl.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_NMR.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_CEAligner.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Dialign_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/PhyloXML/apaf.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/PhyloXML/distribution.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/PhyloXML/example.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/PhyloXML/made_up.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/PhyloXML/bcl_2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.11/build/Tests/ExtendedPhylip/primates.phyx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.11/build/Tests/test_KGML_graphics.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-d.dna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-e.dna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.11/build/Tests/SnapGene/pFA-KanMX4.dna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-f.dna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.11/build/Tests/test_GraphicsGeneral.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/requires_internet.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/clusterbuster.pfm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/minimal_test.meme -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/fourcolumns.pfm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/meme.adh.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/fourrows.pfm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/SRF.pfm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/alignace.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/meme.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/clusterbuster.pfm.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/transfac.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/abdb.xms -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/REB1.pfm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/MA0056.1.transfac -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/Arnt.sites -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.11/build/Tests/test_KeyWList.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_DSSP.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_tab.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Phylo.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/bug2453.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/unfinished.idx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_test.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/length_coords_mismatch.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/bundle_without_target.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/bundle_without_target.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/humor.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/cnksr3.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_test.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/corrupt.idx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/wrong_version.idx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/MAF/invalid.idx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.11/build/Tests/test_HMMGeneral.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_Disordered.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_EMBL_unittest.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_UniProt_GOA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_bigbed.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/wnts.xml.bgz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mock_disco.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/README.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mock_wait.html -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mock_orchid.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mock_pcr.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/wnts.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mirna.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mock_short_result.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mirna.tab -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mock_short_empty.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/mock_actin.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PAML_baseml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_pairwise_aligner.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Pathway.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_KGML_nographics.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_TCoffee_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_PDBParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Nexus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Insdc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_nexus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_AbiIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_File.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.11/build/Tests/UniGene/Hs.2.data -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.11/build/Tests/UniGene/Eca.1.2425.data -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.11/build/Tests/UniGene/Mdm_partial.data -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.11/build/Tests/test_GraphicsChromosome.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_human_sample.gpi -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.11/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.11/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_yeast.gaf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_KDTree.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/canFam2.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/equCab1.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/mm9.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/simple_short.xmfa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_PdbIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_GenomeDiagram.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_features.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Entrez_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Blast_Record.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_ExPASy.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/pig.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/ecoli.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/bsubtilis.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/hg38.chrom.sizes -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/bsubtilis.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/cow.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/pig.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/ecoli.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/Align/cow.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Mafft_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/bad_results.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/gen_results.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/longnames.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/alignment.phylip -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/lysin.trees -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/bad.tree -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/species.tree -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/README.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad1.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad3.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad2.ctl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/species.tree -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.11/build/Tests/test_codonalign.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_sam.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_Superimposer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.11/build/Tests/Enzymes/lipoprotein.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.11/build/Tests/Enzymes/valine.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.11/build/Tests/Enzymes/lactate.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.11/build/Tests/Enzymes/proline.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.11/build/Tests/NBRF/DMA_nuc.pir -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.11/build/Tests/NBRF/clustalw.pir -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.11/build/Tests/NBRF/B_nuc.pir -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.11/build/Tests/NBRF/DMB_prot.pir -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.11/build/Tests/NBRF/Cw_prot.pir -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Tutorial.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_mysql_connector.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_prosite.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/pairwise2_testCases.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_geo.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Phylo_matplotlib.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PAML_codeml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.11/build/Tests/msf/W_prot.msf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.11/build/Tests/msf/DOA_prot.msf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.11/build/Tests/test_kNN.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqUtils.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/map00950.rea -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/ko03070.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.irregular -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.4letter -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/map03070.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/ko00010.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/compound.sample -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/ko01100.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/map01100.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/ko00253.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/compound.irregular -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.sample -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/gene.sample -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.new -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDBList.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/out.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/test.fsa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/fake.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/3100.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/empty.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/no_smpl1.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/test_data -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/310.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/Abi/3730.ab1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Cla.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/InterProScan copying /<>/.pybuild/cpython3_3.11/build/Tests/InterProScan/test_001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/InterProScan copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_hhr.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_NCBITextParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PQR.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Chi2.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_QualityIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Astral.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.11/build/Tests/Cluster/cyano.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.11/build/Tests/Cluster/README -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_pairwise2_no_C.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.11/build/Tests/Phd/phd1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.11/build/Tests/Phd/phd2 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.11/build/Tests/Phd/phd_454 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.11/build/Tests/Phd/phd_solexa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.11/build/Tests/test_LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/tmpdirprankmsa8eyqdR copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Emboss.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/seq_tests_common.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Clustalw_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam4.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam1.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam7.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam3.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam3.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam2.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam5.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/globins45.ali -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/simple.sth -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/example.sth -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam9.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath2.sth -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam6.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam8.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/funny.sth -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam1.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam4.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath3.sth -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam5.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath1.sth -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam2.seed.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/README.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/raftest.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/testDom.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Uniprot.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_align.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta4.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta7.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta6.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta3.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta9.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta8.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta2.out -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.11/build/Tests/NMR/noed.xpk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.11/build/Tests/NMR/out_example.xpk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SwissProt.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_KEGG.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Xdna.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CodonUsage copying /<>/.pybuild/cpython3_3.11/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CodonUsage copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Phd.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_vectors.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl1.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/pro2.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/pro1.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/pro4.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl3.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/drosophilla.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_pro.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl2.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/pro5.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl5.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_id -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/pro3.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/adh.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl4.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_nucl.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.11/build/Tests/test_translate.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Gck.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/interlaced.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/reference_dna2.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/six.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/three.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/random.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/horses.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/hennigian.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/five.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/one.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/four.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/horses.tree -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/reference_dna.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/sequential2.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/sequential.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/two.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/Phylip/interlaced2.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.11/build/Tests/test_phyml_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.11/build/Tests/phenotype/Plate.json -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlate_2.json -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.11/build/Tests/phenotype/BadPlate.json -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.11/build/Tests/phenotype/Plates.csv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.11/build/Tests/phenotype/Plate_2.json -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlate.json -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlates.csv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary7.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/biosample.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/nucleotide2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/journals.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink8.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink4.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/nucleotide1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch4.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/epost2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch6.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/efetch_pmc.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed7.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary6.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/epost1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/efetch_schemas.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink6.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch8.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/ncbi_mim.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink3.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/taxonomy.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary4.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed3.html -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/egquery2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed4.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/espell.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo3.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/epost3.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink7.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed6.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch5.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed5.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/protein.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/egquery1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary5.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink5.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo4.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/elink2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary8.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch7.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch3.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary3.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary9.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Dom.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_motifs.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/DD231055_edited.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/xx_after_co.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/Human_contigs.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/DD231055_edited2.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/embl_with_0_line.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/101ma_no_coords.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/U87107.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/DS830848.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/RepBase23.02.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/location_wrap.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/SC10H5.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/A04195.imgt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/TRBG361.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/patents.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/AAA03323.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/epo_prt_selection.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.11/build/Tests/EMBL/AE017046.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/FSSP copying /<>/.pybuild/cpython3_3.11/build/Tests/FSSP/1cnv.fssp -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/FSSP copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Ace.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_Alignment.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_write.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/biosql.ini.appveyor -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_maf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_bed.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_Selection.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_dual.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/GSM645.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_family.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/GSM691.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_series.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/GSM804.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/GSM700.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/GSE16.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_platform.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_affy.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SffIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Hie.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Prank_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_PDBIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/common_BioSQL.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_phenotype_fit.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_RCSBFormats.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/run_tests.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_fasta.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_BWA_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_seq.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Enzyme.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/example_dos.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq.gz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/tricky.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/example_dos.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_space.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_long_qual.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_double_qual.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_diff_ids.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_escape.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_double_seq.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/example.qual -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/example.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_tab.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_faked.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_93.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_tabs.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_null.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_no_qual.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_short_qual.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_example.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_del.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_faked.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_vtab.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_faked.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_spaces.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/zero_length.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.11/build/Tests/search_tests_common.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_TogoWS.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Residues.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_KGML_graphics_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/codonposset.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/int_node_labels.nwk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/bats.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/test.new -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/test_Nexus_input.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_QCSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_prodoc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Probcons_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_UniGene.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/biosql.ini.sample -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_align_substitution_matrices.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_write.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_NACCESS.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_exonerate.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/4CUP.mmtf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1LCD.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/7CFN.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/4Q9R_min.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.xyzr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1LCD.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2XHE.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2OFG.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/4CUP.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/3JQH.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/Wilke_RASA.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/disordered.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/Ahmad_RASA.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG_noheader.dssp -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1SSU_mod.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1SSU_mod.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/d256ba_.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/Sander_RASA.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/occupancy.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/4ZHL.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1MOM_min.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/a_structure.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/ions.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/4ZHL.mmtf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/lib_10_z_5.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/alignment_file.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.asa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.rsa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.dssp -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1AS5.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/Miller_RASA.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/6WQA.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2XHE.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/header.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/2n0n_M1.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/7CFN_aligned.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/a_structure.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1A7G.cif -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/7DDO.pdb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.mmtf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blat_psl.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_CAPS.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_pairwise2.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.11/build/Tests/Gck/artificial.gck -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/upgma.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/nj.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/test.log -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/trees.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/majority_ref.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/msa.phy -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/pars3.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/nj_min.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/strict_refs.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/adam_refs.tre -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_stockholm.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.long.2bit -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.littleendian.2bit -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.bigendian.2bit -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/meta_types.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/edgelabels.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/meta_taxa.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/nexml.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/characters.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/timetree.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/treebase-record.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/sets.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/trees.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/tolweb.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/trees-uris.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/phenoscape.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.11/build/Tests/NeXML/taxa.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/KF527485.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/EU851978_output.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/pBAD30.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.tsv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/HM138502.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/one_of.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/KF527485_output.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NT_019265.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/iro.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/noref.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_product.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_version.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/no_end_marker.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_accession.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/protein_refseq.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.fna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/negative_location.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/gbvrl1_start.seq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/cor6_6.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.faa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/tsa_acropora.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/arab1.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/origin_line.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/tls_KDHP01000000.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_structured_comment.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/EU851978.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/protein_refseq2.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/1MRR_A.gp -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/blank_seq.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/GU949562.1.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.faa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/dbsource_wrap.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/no_origin_no_end.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/DS830848.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/pri1.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.ffn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/HM138502_output.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/GenBank/extra_keywords.gb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.11/build/Tests/test_NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.11/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.11/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.11/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.11/build/Tests/Nib/test_even.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.11/build/Tests/Nib/test_even_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.11/build/Tests/Nib/test_even_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output005.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output010.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output015.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/phlox.nu -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/tc_out.msf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/sweetpea.nu -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output009.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/centaurea.nu -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output001.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/aster.pro -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output011.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/rosemary.pro -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/dups.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/aster_no_wrap.pro -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/rose.pro -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/f001 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_m8CC.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output006.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output007.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_lib.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_lib.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output004.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/f002 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output012.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/flowers.pro.gz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output016.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/f003 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/lavender.nu -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_m8CC.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_m8CB.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output002.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output013.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output014.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_m8CB.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/loveliesbleeding.pro -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output008.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/lupine.nu -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/README -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/fa01 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/output003.m10 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/elderberry.nu -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.11/build/Tests/Fasta/wisteria.nu -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.11/build/Tests/NeuralNetwork/repeat.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.11/build/Tests/NeuralNetwork/enolase.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.11/build/Tests/output.best.nex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_mauve.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_emboss.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Consensus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Muscle_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_SeqXML.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.11/build/Tests/SubsMat/aaDistrib.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.11/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.11/build/Tests/SubsMat/protein_freq.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.11/build/Tests/SubsMat/protein_count.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.11/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.11/build/Tests/SubsMat/redAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.11/build/Tests/Affy/affy_v3_example.CEL -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.11/build/Tests/Affy/affy_v4_example.CEL -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.11/build/Tests/test_NCBI_qblast.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/cds_forward.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/water.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/NirK_full.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse1.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse2.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_overhang.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/bac_find.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/matcher_pair.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse4.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_nobrief_multiple.pair -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/no_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/matcher_simple.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/needle.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/water2.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse3.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/cds_reverse.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/alignret.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_asis.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/short.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/internal_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/NirK.primer3 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/Emboss/bac_find.psearch -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIFIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.11/build/Tests/Ace/seq.cap.ace -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.11/build/Tests/Ace/consed_sample.ace -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.11/build/Tests/Ace/contig1.ace -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Phylo_networkx.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_MauveIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_ClustalOmega_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_CodonTable.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/README.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cigar_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_cigar_fshifts2.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome_cigar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_tabular.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Saf copying /<>/.pybuild/cpython3_3.11/build/Tests/Saf/saf1.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Saf copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_NibIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/promals3d.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/temp horses.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/hedgehog.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/protein.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.a2m -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.a2m -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.a2m -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.a2m -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.a2m -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.11/build/Tests/Clustalw/odd_consensus.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.11/build/Tests/Registry/EDD_RAT.dat -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.11/build/Tests/Registry/bt001 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.11/build/Tests/Registry/seqs.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.11/build/Tests/test_HMMCasino.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result3.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result1.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result2.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.11/build/Tests/Compass/comtest2 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.11/build/Tests/Compass/comtest1 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_msf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/scatter_test_1.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/spiral_test.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_colors.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_circular.svg -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/simple_bar.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_linear.svg -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.eps -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_linear.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/scatter_test_7.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_circular.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/multi_bar.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_original.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_widths.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/square_test.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_original.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/README -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.svg -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/line_graph_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/random_organism.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/line_graph.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_clustal.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_SMCRA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_motifs_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_phylip.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/README.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/allx.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.11/build/Tests/test_GraphicsDistribution.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Application.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_phenotype.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_MafIO_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_a2m.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_legacy.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PQR copying /<>/.pybuild/cpython3_3.11/build/Tests/PQR/1A80.pqr -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PQR copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_SnapGene.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PAML_yn00.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Medline.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_KEGG_online.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed9.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed6.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_002.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_001.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed6.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/fasta_34.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed8.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed3.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bigPsl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/README.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed5.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_003.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed4.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/hg38.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/balAcu1.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed4.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed5.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bigbed_extended.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed7.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed7.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed3.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed9.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_35_001.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bigbedtest.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed8.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_002.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_004.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed12.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bigbedtest.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/bed12.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.psl.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/rna.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_005.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_35_002.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/mirna.pslx -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/dna.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.bb -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/CAG33136.1.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.bed -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SVDSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Restriction.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_convert.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_bgzf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P68308.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P04439.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P62258.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P60137.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.rdf -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/keywlist2.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp013 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P0A186.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/keywlist.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp015 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13639.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13639.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q7Z739.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P0CK95.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/F2CXE6.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13454.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P97881.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/O23729.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/H2CNN8.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp012 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni003 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P39896.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp016 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/R5HY77.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni001 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/F2CXE6.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P60904.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni002 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/H2CNN8.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P16235.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.list -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/P84001.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/README -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Tests/SwissProt/O95832.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/c3space.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/big.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/c2space.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/c2line.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/c3line.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo2.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/README -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo3.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo.gen -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.11/build/Tests/test_EmbossPrimer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Restriction.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_SMCRA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Application.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Pathway.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BWA_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TCoffee_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Emboss.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_nographics.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_motifs.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ColorSpiral.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Probcons_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_phylip.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_bgzf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDBList.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_CAPS.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Cluster.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_legacy.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_seq.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBIXML.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Fasttree_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SwissProt.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Affy.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Prank_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Dom.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Exposure.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_translate.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_EMBL_unittest.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Residues.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez_parser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/common_BioSQL.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_model.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PhyloXML.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KeyWList.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Scop.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_EmbossPrimer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_Alignment.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_align_substitution_matrices.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigbed.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_clustal.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_hhr.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_UniProt_GOA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise_aligner.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_internal_coords.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/search_tests_common.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SffIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqRecord.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_networkx.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NMR.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_HMMCasino.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_vectors.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_a2m.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NaiveBayes.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_convert.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SVDSuperimposer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GenBank.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Astral.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Nexus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise2.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_fasta.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Wise.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Uniprot.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqFeature.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_baseml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phenotype.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_geo.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Selection.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_LogisticRegression.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_yn00.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_codeml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Compass.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_write.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBITextParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_graphics_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ExPASy.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsGeneral.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_prodoc.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TreeConstruction.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Blast_Record.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsChromosome.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/seq_tests_common.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_prosite.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_UniGene.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Raf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Clustalw_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsDistribution.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ProtParam.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Dice.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Chi2.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_nexus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_exonerate.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phd.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_write.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Mafft_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_graphics.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Des.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PQR.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignInfo.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bed.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_kNN.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Gck.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_cellosaurus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Tutorial.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_HMMGeneral.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KEGG.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/common_BioSQL_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_tabular.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PSEA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_stockholm.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_DSSP.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/requires_internet.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Medline.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_MafIO_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Muscle_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_KDTree.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GenomeDiagram.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Seq_objs.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_NeXML.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_align.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_features.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KEGG_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_emboss.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phenotype_fit.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigpsl.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_MarkovModel.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise2_no_C.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Superimposer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Hie.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phyml_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_QCSuperimposer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_sam.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Ace.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Cla.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_NACCESS.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_samtools_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_codonalign.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigmaf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_msf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_CEAligner.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_maf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqUtils.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_CodonTable.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Enzyme.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_RCSBFormats.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_mauve.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_CDAO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PDBParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/pairwise2_testCases.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PDBIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TogoWS.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_psl.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBI_qblast.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Disordered.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_File.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_motifs_online.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Dialign_tool.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Consensus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_SASA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/pvuii.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/foki.htm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/crei.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/cac81.htm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/bamii.htm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/taqi.htm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/cac81.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/taqi.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/bamii.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/foki.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/crei.htm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/Rebase/pvuii.htm -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Fasttree_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Cluster.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_header.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/bam1.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_header.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/bam2.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/readme.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/bam1_sorted.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/sam1.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.fa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/sam2.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.sam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/bam2_sorted.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_refresh.bam -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Entrez_parser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.11/build/Tests/GFF/multi.fna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802x.fna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802.fna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802lc.fna -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001422.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/tmpdirprankmsa1tdJWi copying /<>/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.11/build/Tests/SeqXML/corrupt_example2.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.11/build/Tests/SeqXML/global_species_example.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.11/build/Tests/SeqXML/rna_example.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.11/build/Tests/SeqXML/corrupt_example1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.11/build/Tests/SeqXML/dna_example.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.11/build/Tests/SeqXML/protein_example.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Scop.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Entrez.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Seq_objs.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_PSEA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_pairwise_alignment_map.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Affy.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_ProtParam.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_PDB_Exposure.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_samtools_tool.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/test_Align_psl.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/Tests/output.best.fas -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /<>/.pybuild/cpython3_3.11/build/tree1.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_graphics.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_searchio.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pdb.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_testing.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_searchio.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_appendix.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_learning.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cluster.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_testing.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cluster.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pdb.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_appendix.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_align.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seqio.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_motifs.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seqio.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phylo.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_entrez.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_graphics.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_contributing.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_popgen.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_entrez.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_popgen.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_kegg.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_kegg.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_blast.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_align.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_learning.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_contributing.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_blast.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phylo.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_introduction.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_introduction.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_motifs.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/ec_5.4.2.2.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/www_blast.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/fasta_iterator.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/ACT_example.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/clustal_run.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/Plates.csv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/simple.dnd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/fasta_dictionary.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/nmr/noed.xpk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/nmr/simplepredict.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.dnd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/PF05371_seed.sth -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/beta.faa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/swissprot.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/my_blat.psl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/alpha.faa -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/m_cold.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/my_blast.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.gz -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.11/build/Doc/Tutorial.tex -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc copying /<>/.pybuild/cpython3_3.11/build/other_trees.xml -> /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.11/build/Bio/Wise/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.11/build/Bio/Wise/psw.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.11/build/Bio/Wise/dnal.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Wise/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Wise/__pycache__/psw.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Wise/__pycache__/dnal.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/hit.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/_base.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/hsp.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/query.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/hit.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/_base.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/query.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlatIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/_utils.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/FastaIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/BlatIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/_utils.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application copying /<>/.pybuild/cpython3_3.11/build/Bio/Application/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Application/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/pfm.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/alignace.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/db.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__pycache__/db.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/xms.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/meme.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/minimal.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/applications/_xxmotif.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/matrix.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/thresholds.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/transfac.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/mast.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/pfm.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/xms.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/thresholds.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/matrix.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/minimal.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/clusterbuster.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/meme.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/alignace.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/transfac.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/mast.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.11/build/Bio/motifs/clusterbuster.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/ParseBlastTable.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/NCBIWWW.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/Applications.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/Record.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/NCBIWWW.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/NCBIXML.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/Applications.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Blast/Record.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.11/build/Bio/kNN.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene copying /<>/.pybuild/cpython3_3.11/build/Bio/UniGene/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/UniGene/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS copying /<>/.pybuild/cpython3_3.11/build/Bio/TogoWS/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/TogoWS/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.11/build/Bio/UniProt/GOA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.11/build/Bio/UniProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/UniProt/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/UniProt/__pycache__/GOA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/tabular.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/bigmaf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/a2m.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/interfaces.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/_aligners.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/mauve.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/msf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/sam.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/hhr.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/stockholm.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/fasta.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/maf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/bigpsl.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/phylip.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_TCoffee.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Mafft.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Prank.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Dialign.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Clustalw.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Probcons.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Muscle.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Prank.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_MSAProbs.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/exonerate.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MEGABLAST -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/FENG -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLASTN -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/HOXD70 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/RAO -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/TRANS -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/STR -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/JONES -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLASTP -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/nexus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/bigbed.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/psl.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/clustal.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/phylip.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/sam.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/psl.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/clustal.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/AlignInfo.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/fasta.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/tabular.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigmaf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigbed.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/emboss.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/stockholm.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/maf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bed.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/interfaces.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/mauve.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/a2m.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/exonerate.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/nexus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/msf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/hhr.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigpsl.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/emboss.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.11/build/Bio/Align/bed.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/codeml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_paml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/baseml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/yn00.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/chi2.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/NeXML.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/CDAO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/NeXMLIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/NewickIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Raxml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Phyml.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/_io.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Consensus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/CDAOIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PhyloXMLIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/_utils.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/Newick.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/BaseTree.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/_cdao_owl.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/PhyloXML.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NexusIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NeXML.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NewickIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/CDAO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/Newick.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_utils.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_io.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/Consensus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/CDAOIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/BaseTree.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Phylo/PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.11/build/Bio/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/StockholmIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/MauveIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/MsfIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/FastaIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/NexusIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/Interfaces.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MsfIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MauveIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MafIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/AlignIO/MafIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer copying /<>/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Map/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Map/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/REST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/KEGG/__pycache__/REST.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/cpairwise2module.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /<>/.pybuild/cpython3_3.11/build/Bio/bgzf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.11/build/Bio/Cluster/cluster.h -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.11/build/Bio/Cluster/cluster.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.11/build/Bio/Cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.11/build/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Cluster/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Cluster/clustermodule.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/Prodoc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/Prosite.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/ScanProsite.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Prodoc.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Prosite.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Enzyme.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/ExPASy/Enzyme.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.11/build/Bio/LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/Dom.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/Raf.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/Cla.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/Des.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/Residues.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Cla.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Des.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Dom.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Raf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Hie.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Residues.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SCOP/Hie.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/ProtParam.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/CheckSum.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/ProtParamData.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/lcc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/CodonUsage.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/lcc.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/MeltingTemp.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.11/build/Bio/NMR/NOEtools.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.11/build/Bio/NMR/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/xpktools.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/NOEtools.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/NMR/xpktools.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/codonalignment.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/codonseq.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/codonalignment.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/codonseq.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.11/build/Bio/phenotype/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.11/build/Bio/phenotype/phen_micro.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/pm_fitting.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/phen_micro.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/phenotype/pm_fitting.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/XSDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/XSDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/phrase.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/references.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-references1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isodia.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/chars.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/section.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-section1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isopub.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/elink.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/math.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/link.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-math1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/format.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/epost.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-list1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/list.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-common1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isobox.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/modules.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esummary_gene.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-display1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/display.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/para.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-para1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-format1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/notat.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isonum.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isotech.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/common.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-link1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xhtml-table-1.mod -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/Parser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/__pycache__/Parser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Entrez/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/Trainer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/DynamicProgramming.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/Utilities.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/Trainer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/Utilities.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/MarkovModel.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/PDBData.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/SCOPData.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/IUPACData.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/CodonTable.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/SCOPData.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/IUPACData.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/CodonTable.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/PDBData.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo copying /<>/.pybuild/cpython3_3.11/build/Bio/Geo/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Geo/__pycache__/Record.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Geo/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Geo/Record.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet copying /<>/.pybuild/cpython3_3.11/build/Bio/Alphabet/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/Trees.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/Nodes.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/StandardData.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Nodes.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/StandardData.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Trees.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Nexus.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Nexus/Nexus.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/PDBList.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Dice.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/internal_coords.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/HSExposure.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmcifio.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Atom.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/NeighborSearch.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/AbstractPropertyMap.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/vectors.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/SCADIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Entity.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/ccealignmodule.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/cealign.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/StructureBuilder.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/qcprot.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Chain.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/PSEA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Model.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Superimposer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/ic_rebuild.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/PICIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/ResidueDepth.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/DSSP.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/SASA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/ic_data.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/NACCESS.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/PDBIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Residue.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBList.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Selection.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Residue.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/internal_coords.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Model.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Chain.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/MMCIFParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Superimposer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/SASA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Entity.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/StructureBuilder.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PSEA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ResidueDepth.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/cealign.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBExceptions.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Dice.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/NeighborSearch.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PICIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/qcprot.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ic_rebuild.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/HSExposure.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/FragmentMapper.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/NACCESS.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Structure.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/vectors.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/mmcifio.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ic_data.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/DSSP.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Polypeptide.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/SCADIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/StructureAlignment.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Atom.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/mmtfio.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Structure.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/PDBParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/PDBExceptions.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.11/build/Bio/PDB/Selection.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/Scanner.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/utils.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/Record.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/utils.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/Scanner.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/GenBank/Record.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_bwa.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_samtools.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Ace.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/Phd.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/Ace.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/Phd.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.11/build/Bio/Affy/CelFile.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.11/build/Bio/Affy/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Affy/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Affy/__pycache__/CelFile.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/Primer3.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/PrimerSearch.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/Applications.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/Primer3.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/Applications.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /<>/.pybuild/cpython3_3.11/build/Bio/NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /<>/.pybuild/cpython3_3.11/build/Bio/_utils.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /<>/.pybuild/cpython3_3.11/build/Bio/Seq.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline copying /<>/.pybuild/cpython3_3.11/build/Bio/Medline/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Medline/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass copying /<>/.pybuild/cpython3_3.11/build/Bio/Compass/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Compass/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/Comparative.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/Distribution.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/KGML_vis.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/DisplayRepresentation.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/KGML_vis.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/Distribution.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/Comparative.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Graphics/BasicChromosome.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS copying /<>/.pybuild/cpython3_3.11/build/Bio/CAPS/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/CAPS/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/SeqXmlIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/PhdIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.c -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/PdbIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/AceIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/SffIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/SnapGeneIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/GckIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/SwissIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/PirIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/NibIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/_index.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/TabIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/UniprotIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/IgIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/QualityIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/FastaIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SwissIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/IgIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SffIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/_index.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PhdIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PdbIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/NibIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/GckIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/AceIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/TabIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PirIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/Interfaces.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/QualityIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/AbiIO.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/AbiIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/XdnaIO.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Bio/SwissProt/KeyWList.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.11/build/Bio/SwissProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SwissProt/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/SwissProt/__pycache__/KeyWList.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/PrintFormat.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/Restriction.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/PrintFormat.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/Restriction.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/FileParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/Controller.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/EasyController.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/bgzf.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/kNN.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/SeqRecord.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/pairwise2.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/_utils.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/Seq.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/LogisticRegression.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/MaxEntropy.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/NaiveBayes.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/File.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/MarkovModel.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/__pycache__/SeqFeature.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/File.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /<>/.pybuild/cpython3_3.11/build/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/Graph.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/Pathway/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/Bio/MaxEntropy.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /<>/.pybuild/cpython3_3.11/build/Bio/pairwise2.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.config creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/matplotlib creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache/matplotlib copying /<>/.pybuild/cpython3_3.11/build/home/.cache/matplotlib/fontlist-v330.json -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache/matplotlib creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/methods creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/mcoffee creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/plugins creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/plugins/linux creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/cache byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/Loader.py to Loader.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigmaf.py to test_Align_bigmaf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Wise.py to test_Wise.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Compass.py to test_Compass.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigpsl.py to test_Align_bigpsl.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NMR.py to test_NMR.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_CEAligner.py to test_PDB_CEAligner.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/requires_internet.py to requires_internet.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigbed.py to test_Align_bigbed.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_nexus.py to test_Align_nexus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_File.py to test_File.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_sam.py to test_Align_sam.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_prosite.py to test_prosite.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_geo.py to test_geo.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_kNN.py to test_kNN.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_hhr.py to test_Align_hhr.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PQR.py to test_PQR.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_align.py to test_align.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phd.py to test_Phd.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_translate.py to test_translate.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_motifs.py to test_motifs.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Ace.py to test_Ace.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_Alignment.py to test_Align_Alignment.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_maf.py to test_Align_maf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bed.py to test_Align_bed.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Selection.py to test_PDB_Selection.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/run_tests.py to run_tests.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_fasta.py to test_Align_fasta.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_seq.py to test_seq.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_QCSuperimposer.py to test_PDB_QCSuperimposer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_exonerate.py to test_Align_exonerate.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_stockholm.py to test_Align_stockholm.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_mauve.py to test_Align_mauve.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_emboss.py to test_Align_emboss.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_tabular.py to test_Align_tabular.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_msf.py to test_Align_msf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_clustal.py to test_Align_clustal.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_phylip.py to test_Align_phylip.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Application.py to test_Application.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_a2m.py to test_Align_a2m.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Medline.py to test_Medline.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PSEA.py to test_PDB_PSEA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Affy.py to test_Affy.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_psl.py to test_Align_psl.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/psw.py to psw.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/dnal.py to dnal.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_index.py to _index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/pfm.py to pfm.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/alignace.py to alignace.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/xms.py to xms.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/meme.py to meme.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/minimal.py to minimal.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/matrix.py to matrix.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/transfac.py to transfac.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/mast.py to mast.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/Applications.py to Applications.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/Record.py to Record.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/kNN.py to kNN.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/tabular.py to tabular.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigmaf.py to bigmaf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/a2m.py to a2m.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/interfaces.py to interfaces.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/mauve.py to mauve.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/msf.py to msf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/sam.py to sam.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/hhr.py to hhr.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/stockholm.py to stockholm.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/fasta.py to fasta.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/maf.py to maf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigpsl.py to bigpsl.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/phylip.py to phylip.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/exonerate.py to exonerate.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/nexus.py to nexus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigbed.py to bigbed.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/psl.py to psl.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/clustal.py to clustal.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/emboss.py to emboss.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bed.py to bed.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_io.py to _io.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/REST.py to REST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/bgzf.py to bgzf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Des.py to Des.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/PDBData.py to PDBData.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/Record.py to Record.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Dice.py to Dice.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Atom.py to Atom.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/vectors.py to vectors.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Entity.py to Entity.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/cealign.py to cealign.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/qcprot.py to qcprot.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Chain.py to Chain.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Model.py to Model.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/SASA.py to SASA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Residue.py to Residue.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Structure.py to Structure.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Selection.py to Selection.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/utils.py to utils.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/Record.py to Record.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/_utils.py to _utils.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Seq.py to Seq.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/_index.py to _index.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/File.py to File.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/Bio/pairwise2.py to pairwise2.cpython-311.pyc running install_egg_info Copying biopython.egg-info to /<>/debian/tmp/usr/lib/python3.11/dist-packages/biopython-1.81.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/<>' dh_install -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython//usr/lib/python3.11/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.11/dist-packages/Bio debian/tmp/usr/lib/python3.11/dist-packages/biopython-1.81.egg-info debian/python3-biopython//usr/lib/python3.11/dist-packages/ install -m0755 -d debian/python3-biopython//usr/lib/python3.12/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.12/dist-packages/Bio debian/tmp/usr/lib/python3.12/dist-packages/biopython-1.81.egg-info debian/python3-biopython//usr/lib/python3.12/dist-packages/ dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython install -p -m0644 debian/.debhelper/generated/python3-biopython/dh_installchangelogs.dch.trimmed debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-biopython/dh_installchangelogs.news.trimmed debian/python3-biopython/usr/share/doc/python3-biopython/NEWS.Debian dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20231204 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:149: skipping package: python-biopython-doc D: dh_python3 debhelper:183: source=python-biopython, binary packages=['python3-biopython'] D: dh_python3 dh_python3:204: processing package python3-biopython... D: dh_python3 fs:50: moving files from debian/python3-biopython/usr/lib/python3.11/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-biopython/usr/lib/python3.12/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:348: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.81.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.81.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.11'), Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:281: D={'python3 (<< 3.13)', 'python3-numpy', 'python3:any', 'python3 (>= 3.11~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/w3c-sgml-lib/schema/dtd/XX-MathML2-20031104/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-biopython chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/<>' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug chmod 0644 -- debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9efbae184ef6219d1e8b815d1e80adb9f7720d93 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/fbae184ef6219d1e8b815d1e80adb9f7720d93.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/fbae184ef6219d1e8b815d1e80adb9f7720d93.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripe1769s debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripe1769s cat '/tmp/qsxNFOQ8iX/stripe1769s' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripe1769s debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/fbae184ef6219d1e8b815d1e80adb9f7720d93.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy37H4Ts chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy37H4Ts cat '/tmp/qsxNFOQ8iX/objcopy37H4Ts' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopy37H4Ts debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 bb1f08ba7674e55a52399af5a07e63ad2522088b install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bb objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bb/1f08ba7674e55a52399af5a07e63ad2522088b.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bb/1f08ba7674e55a52399af5a07e63ad2522088b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripVllnFd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripVllnFd cat '/tmp/qsxNFOQ8iX/stripVllnFd' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripVllnFd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bb/1f08ba7674e55a52399af5a07e63ad2522088b.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopympo6ZF chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopympo6ZF cat '/tmp/qsxNFOQ8iX/objcopympo6ZF' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopympo6ZF debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 86ef9f40e06dd9bfd5e0b8b86003d0fa23595a9a install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86/ef9f40e06dd9bfd5e0b8b86003d0fa23595a9a.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86/ef9f40e06dd9bfd5e0b8b86003d0fa23595a9a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripPtiMVE debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripPtiMVE cat '/tmp/qsxNFOQ8iX/stripPtiMVE' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripPtiMVE debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86/ef9f40e06dd9bfd5e0b8b86003d0fa23595a9a.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyxKB4xe chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyxKB4xe cat '/tmp/qsxNFOQ8iX/objcopyxKB4xe' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyxKB4xe debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9c898543b82d31304635b618909a603b76cedc6f install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9c/898543b82d31304635b618909a603b76cedc6f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9c/898543b82d31304635b618909a603b76cedc6f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/strip_xBW6M debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/strip_xBW6M cat '/tmp/qsxNFOQ8iX/strip_xBW6M' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/strip_xBW6M debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9c/898543b82d31304635b618909a603b76cedc6f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyeGx__T chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyeGx__T cat '/tmp/qsxNFOQ8iX/objcopyeGx__T' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyeGx__T debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5536aef0db9773abf30fc8b89b5f6855d8702ea5 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/55/36aef0db9773abf30fc8b89b5f6855d8702ea5.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/55/36aef0db9773abf30fc8b89b5f6855d8702ea5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripRmCVjJ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripRmCVjJ cat '/tmp/qsxNFOQ8iX/stripRmCVjJ' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripRmCVjJ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/55/36aef0db9773abf30fc8b89b5f6855d8702ea5.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyJqpHTg chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyJqpHTg cat '/tmp/qsxNFOQ8iX/objcopyJqpHTg' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyJqpHTg debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9527edcf8a0ab52cdfe98683fcee68afbdccee8d install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/95/27edcf8a0ab52cdfe98683fcee68afbdccee8d.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/95/27edcf8a0ab52cdfe98683fcee68afbdccee8d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripZ9ATwc debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripZ9ATwc cat '/tmp/qsxNFOQ8iX/stripZ9ATwc' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripZ9ATwc debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/95/27edcf8a0ab52cdfe98683fcee68afbdccee8d.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopygmLZln chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopygmLZln cat '/tmp/qsxNFOQ8iX/objcopygmLZln' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopygmLZln debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 811850e8511c9a14f27e123482d3a26010b68332 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/81/1850e8511c9a14f27e123482d3a26010b68332.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/81/1850e8511c9a14f27e123482d3a26010b68332.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripX1cFoe debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripX1cFoe cat '/tmp/qsxNFOQ8iX/stripX1cFoe' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripX1cFoe debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/81/1850e8511c9a14f27e123482d3a26010b68332.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyX8u7gP chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyX8u7gP cat '/tmp/qsxNFOQ8iX/objcopyX8u7gP' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyX8u7gP debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5148c1712fb7eb45d026fcddbe7b826f6674a86d install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/51/48c1712fb7eb45d026fcddbe7b826f6674a86d.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/51/48c1712fb7eb45d026fcddbe7b826f6674a86d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripxxKGDf debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripxxKGDf cat '/tmp/qsxNFOQ8iX/stripxxKGDf' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripxxKGDf debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/51/48c1712fb7eb45d026fcddbe7b826f6674a86d.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy40uB5y chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy40uB5y cat '/tmp/qsxNFOQ8iX/objcopy40uB5y' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopy40uB5y debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 72032e96f0928ba7955c01c5597eeb054c301f65 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/72/032e96f0928ba7955c01c5597eeb054c301f65.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/72/032e96f0928ba7955c01c5597eeb054c301f65.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripoP_GUa debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripoP_GUa cat '/tmp/qsxNFOQ8iX/stripoP_GUa' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripoP_GUa debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/72/032e96f0928ba7955c01c5597eeb054c301f65.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyhLp2E8 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyhLp2E8 cat '/tmp/qsxNFOQ8iX/objcopyhLp2E8' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyhLp2E8 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 bfaa5f712c869192cdca43b9ef25963c81e5410a install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/aa5f712c869192cdca43b9ef25963c81e5410a.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/aa5f712c869192cdca43b9ef25963c81e5410a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/strip1mF0Gl debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/strip1mF0Gl cat '/tmp/qsxNFOQ8iX/strip1mF0Gl' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/strip1mF0Gl debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bf/aa5f712c869192cdca43b9ef25963c81e5410a.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopys_2ufQ chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopys_2ufQ cat '/tmp/qsxNFOQ8iX/objcopys_2ufQ' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopys_2ufQ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 eb1024929c93e83b2012275509df6f2e8376573f install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb/1024929c93e83b2012275509df6f2e8376573f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb/1024929c93e83b2012275509df6f2e8376573f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripJEmdol debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripJEmdol cat '/tmp/qsxNFOQ8iX/stripJEmdol' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripJEmdol debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb/1024929c93e83b2012275509df6f2e8376573f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyDqtOyo chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyDqtOyo cat '/tmp/qsxNFOQ8iX/objcopyDqtOyo' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyDqtOyo debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 2436136d192bcc744856b11608835a316271df7d install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/36136d192bcc744856b11608835a316271df7d.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/36136d192bcc744856b11608835a316271df7d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripq0ojdT debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripq0ojdT cat '/tmp/qsxNFOQ8iX/stripq0ojdT' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripq0ojdT debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/36136d192bcc744856b11608835a316271df7d.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyi5MRsq chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyi5MRsq cat '/tmp/qsxNFOQ8iX/objcopyi5MRsq' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyi5MRsq debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 1202942ea215291076704797427b67a1e01aa743 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/12 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/12/02942ea215291076704797427b67a1e01aa743.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/12/02942ea215291076704797427b67a1e01aa743.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripyj5ES7 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripyj5ES7 cat '/tmp/qsxNFOQ8iX/stripyj5ES7' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripyj5ES7 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/12/02942ea215291076704797427b67a1e01aa743.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy9b0Ofp chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy9b0Ofp cat '/tmp/qsxNFOQ8iX/objcopy9b0Ofp' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopy9b0Ofp debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d880c4bbd49752f45bd41d8ff1e5adbc87760273 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d8 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d8/80c4bbd49752f45bd41d8ff1e5adbc87760273.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d8/80c4bbd49752f45bd41d8ff1e5adbc87760273.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripB3XHfE debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripB3XHfE cat '/tmp/qsxNFOQ8iX/stripB3XHfE' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripB3XHfE debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d8/80c4bbd49752f45bd41d8ff1e5adbc87760273.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyLraKE9 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyLraKE9 cat '/tmp/qsxNFOQ8iX/objcopyLraKE9' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyLraKE9 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 afd25560a08378bf3eb15c5d381c150604872bc6 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/af/d25560a08378bf3eb15c5d381c150604872bc6.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/af/d25560a08378bf3eb15c5d381c150604872bc6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripn04X5z debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripn04X5z cat '/tmp/qsxNFOQ8iX/stripn04X5z' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripn04X5z debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/af/d25560a08378bf3eb15c5d381c150604872bc6.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy43q03O chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopy43q03O cat '/tmp/qsxNFOQ8iX/objcopy43q03O' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopy43q03O debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 c727cf2f9a00cd2d6bbfbe21e0cdfb97135ffeb5 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c7/27cf2f9a00cd2d6bbfbe21e0cdfb97135ffeb5.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c7/27cf2f9a00cd2d6bbfbe21e0cdfb97135ffeb5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripUJ0Soy debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripUJ0Soy cat '/tmp/qsxNFOQ8iX/stripUJ0Soy' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripUJ0Soy debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c7/27cf2f9a00cd2d6bbfbe21e0cdfb97135ffeb5.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyo3eaFx chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyo3eaFx cat '/tmp/qsxNFOQ8iX/objcopyo3eaFx' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyo3eaFx debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 854b63562b0f0e20f8c0cca3b2eea4859c81ef85 install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85/4b63562b0f0e20f8c0cca3b2eea4859c81ef85.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85/4b63562b0f0e20f8c0cca3b2eea4859c81ef85.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/stripmIVcU9 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/stripmIVcU9 cat '/tmp/qsxNFOQ8iX/stripmIVcU9' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/stripmIVcU9 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85/4b63562b0f0e20f8c0cca3b2eea4859c81ef85.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyz4z0eX chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopyz4z0eX cat '/tmp/qsxNFOQ8iX/objcopyz4z0eX' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopyz4z0eX debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.81\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 05f796f80e421d93462fce79d3128ec221a6396c install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/05/f796f80e421d93462fce79d3128ec221a6396c.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/05/f796f80e421d93462fce79d3128ec221a6396c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/qsxNFOQ8iX/strip_RB4YP debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/strip_RB4YP cat '/tmp/qsxNFOQ8iX/strip_RB4YP' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/strip_RB4YP debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/05/f796f80e421d93462fce79d3128ec221a6396c.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopygFHFvY chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so /tmp/qsxNFOQ8iX/objcopygFHFvY cat '/tmp/qsxNFOQ8iX/objcopygFHFvY' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so' chmod --reference /tmp/qsxNFOQ8iX/objcopygFHFvY debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym install -m0755 -d debian/.debhelper/python3-biopython dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=05f796f80e421d93462fce79d3128ec221a6396c 1202942ea215291076704797427b67a1e01aa743 2436136d192bcc744856b11608835a316271df7d 5148c1712fb7eb45d026fcddbe7b826f6674a86d 5536aef0db9773abf30fc8b89b5f6855d8702ea5 72032e96f0928ba7955c01c5597eeb054c301f65 811850e8511c9a14f27e123482d3a26010b68332 854b63562b0f0e20f8c0cca3b2eea4859c81ef85 86ef9f40e06dd9bfd5e0b8b86003d0fa23595a9a 9527edcf8a0ab52cdfe98683fcee68afbdccee8d 9c898543b82d31304635b618909a603b76cedc6f 9efbae184ef6219d1e8b815d1e80adb9f7720d93 afd25560a08378bf3eb15c5d381c150604872bc6 bb1f08ba7674e55a52399af5a07e63ad2522088b bfaa5f712c869192cdca43b9ef25963c81e5410a c727cf2f9a00cd2d6bbfbe21e0cdfb97135ffeb5 d880c4bbd49752f45bd41d8ff1e5adbc87760273 eb1024929c93e83b2012275509df6f2e8376573f" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root debian/.debhelper/scratch-space/build-python3-biopython INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-biopython (in debian/python3-biopython); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython-dbgsym (in debian/.debhelper/python3-biopython/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-biopython/DEBIAN/control, package python3-biopython, directory debian/python3-biopython pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.81+dfsg-3_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control, package python3-biopython-dbgsym, directory debian/.debhelper/python3-biopython/dbgsym-root dpkg-deb: building package 'python3-biopython-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.81+dfsg-3_arm64.deb'. Renaming python3-biopython-dbgsym_1.81+dfsg-3_arm64.deb to python3-biopython-dbgsym_1.81+dfsg-3_arm64.ddeb mv debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.81\+dfsg-3_arm64.deb ../python3-biopython-dbgsym_1.81\+dfsg-3_arm64.ddeb dpkg-genbuildinfo --build=any -O../python-biopython_1.81+dfsg-3_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../python-biopython_1.81+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-19T23:37:50Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-biopython_1.81+dfsg-3_arm64.changes: ------------------------------------------- Format: 1.8 Date: Tue, 19 Dec 2023 15:06:46 +0100 Source: python-biopython Binary: python3-biopython Built-For-Profiles: noudeb Architecture: arm64 Version: 1.81+dfsg-3 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: python3-biopython - Python3 library for bioinformatics Closes: 1058967 Changes: python-biopython (1.81+dfsg-3) unstable; urgency=medium . * d/control: remove dependency on python3-unittest2. (Closes: #1058967) Checksums-Sha1: 32c9900c5a98852acb2287d17669e8ab3f2b3ec2 14171 python-biopython_1.81+dfsg-3_arm64.buildinfo d2d4755cd133c02955ec18910886a31c0c0cbb95 608878 python3-biopython-dbgsym_1.81+dfsg-3_arm64.ddeb 5bdb7d485322e5a5cc4d1ad15f956cd5fa422df8 1664004 python3-biopython_1.81+dfsg-3_arm64.deb Checksums-Sha256: fbe9ddb081aba55e2a1f2fc63f086d388e7a4e492b537093a3cafdfd660168dd 14171 python-biopython_1.81+dfsg-3_arm64.buildinfo 7edcfe913c583b0811a1958a9810fe41363db648e262cc96fa0e65adbdab1947 608878 python3-biopython-dbgsym_1.81+dfsg-3_arm64.ddeb 8e2abd6f93be28dc2bb7da1bbb2ff1bf141b86b8c62df69ca02e6aaacbc52ab0 1664004 python3-biopython_1.81+dfsg-3_arm64.deb Files: acc7836f75881cd15ac673dbb729ad76 14171 python optional python-biopython_1.81+dfsg-3_arm64.buildinfo 5527421bdac79b936c1c7b41ce0f10a5 608878 debug optional python3-biopython-dbgsym_1.81+dfsg-3_arm64.ddeb ed1704e61aed5ee44323323920aad7ca 1664004 python optional python3-biopython_1.81+dfsg-3_arm64.deb /<>/python-biopython_1.81+dfsg-3_arm64.changes.new could not be renamed to /<>/python-biopython_1.81+dfsg-3_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-biopython Binary: python3-biopython python3-biopython-dbgsym Architecture: arm64 Version: 1.81+dfsg-3 Checksums-Md5: 5527421bdac79b936c1c7b41ce0f10a5 608878 python3-biopython-dbgsym_1.81+dfsg-3_arm64.ddeb ed1704e61aed5ee44323323920aad7ca 1664004 python3-biopython_1.81+dfsg-3_arm64.deb Checksums-Sha1: d2d4755cd133c02955ec18910886a31c0c0cbb95 608878 python3-biopython-dbgsym_1.81+dfsg-3_arm64.ddeb 5bdb7d485322e5a5cc4d1ad15f956cd5fa422df8 1664004 python3-biopython_1.81+dfsg-3_arm64.deb Checksums-Sha256: 7edcfe913c583b0811a1958a9810fe41363db648e262cc96fa0e65adbdab1947 608878 python3-biopython-dbgsym_1.81+dfsg-3_arm64.ddeb 8e2abd6f93be28dc2bb7da1bbb2ff1bf141b86b8c62df69ca02e6aaacbc52ab0 1664004 python3-biopython_1.81+dfsg-3_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Tue, 19 Dec 2023 23:37:50 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-aarch64-linux-gnu (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), blt (= 2.5.3+dfsg-7), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bwa (= 0.7.17-7), bzip2 (= 1.0.8-5build1), clustalo (= 1.2.4-8), clustalw (= 2.1+lgpl-7), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20231204), dh-strip-nondeterminism (= 1.13.1-1), dialign (= 2.2.1-11), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dssp (= 4.2.2-2), dwz (= 0.15-1), emboss (= 6.6.0+dfsg-12ubuntu1), emboss-data (= 6.6.0+dfsg-12ubuntu1), emboss-lib (= 6.6.0+dfsg-12ubuntu1), fasttree (= 2.1.11-2), file (= 1:5.45-2), findutils (= 4.9.0-5), flex (= 2.6.4-8.2), fontconfig-config (= 2.14.2-6ubuntu1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-extra (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lmodern (= 2.005-1), fonts-lyx (= 2.3.7-1), fonts-urw-base35 (= 20200910-7), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), ghostscript (= 10.02.1~dfsg1-0ubuntu1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hevea (= 2.36-2), hicolor-icon-theme (= 0.17-2), hostname (= 3.23+nmu1ubuntu1), imagemagick (= 8:6.9.11.60+dfsg-1.6ubuntu1), imagemagick-6-common (= 8:6.9.11.60+dfsg-1.6ubuntu1), imagemagick-6.q16 (= 8:6.9.11.60+dfsg-1.6ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapache-pom-java (= 29-2), libarchive-zip-perl (= 1.68-1), libargtable2-0 (= 13-1.1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libavahi-client3 (= 0.8-13ubuntu2), libavahi-common-data (= 0.8-13ubuntu2), libavahi-common3 (= 0.8-13ubuntu2), libbinutils (= 2.41.50.20231214-1ubuntu1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.2-6ubuntu1), libboost-dev (= 1.83.0.1ubuntu2), libboost1.83-dev (= 1.83.0-1ubuntu3), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcifpp-data (= 5.0.7.1-3build1), libcifpp5 (= 5.0.7.1-3build1), libcom-err2 (= 1.47.0-2ubuntu1), libcommons-logging-java (= 1.2-4), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libcups2 (= 2.4.6-0ubuntu3), libcurl3-gnutls (= 8.4.0-2ubuntu1), libdav1d7 (= 1.3.0-2), libdb5.3 (= 5.3.28+dfsg2-4), libdbus-1-3 (= 1.14.10-1ubuntu1), libde265-0 (= 1.0.13-1), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.1ubuntu5), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libexpat1-dev (= 2.5.0-2), libffi8 (= 3.4.4-2), libfftw3-double3 (= 3.3.10-1ubuntu1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontbox-java (= 1:1.8.16-5), libfontconfig1 (= 2.14.2-6ubuntu1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.13.2+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgd3 (= 2.3.3-9ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgfortran5 (= 13.2.0-9ubuntu1), libglib2.0-0 (= 2.78.3-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgprofng0 (= 2.41.50.20231214-1ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgs-common (= 10.02.1~dfsg1-0ubuntu1), libgs10 (= 10.02.1~dfsg1-0ubuntu1), libgs10-common (= 10.02.1~dfsg1-0ubuntu1), libgssapi-krb5-2 (= 1.20.1-5build1), libharfbuzz0b (= 8.0.1-1build1), libheif-plugin-dav1d (= 1.17.4-1ubuntu1), libheif-plugin-libde265 (= 1.17.4-1ubuntu1), libheif1 (= 1.17.4-1ubuntu1), libhogweed6 (= 3.9.1-2), libhpdf-2.3.0 (= 2.3.0+dfsg-1build1), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.6.0-1), libhwasan0 (= 13.2.0-9ubuntu1), libice6 (= 2:1.0.10-1build2), libicu74 (= 74.2-1ubuntu1), libidn12 (= 1.41-1), libidn2-0 (= 2.3.4-1build1), libijs-0.35 (= 0.35-15.1), libimagequant0 (= 2.18.0-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjbig2dec0 (= 0.20-1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-sphinxdoc (= 7.2.6-3), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkpathsea6 (= 2023.20230311.66589-8build1), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblapack3 (= 3.11.0-2build1), liblbfgsb0 (= 3.0+dfsg.4-1), liblcms2-2 (= 2.14-2), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblerc4 (= 4.0.0+ds-4ubuntu1), liblmdb0 (= 0.9.31-1), liblqr-1-0 (= 0.4.2-2.1), liblsan0 (= 13.2.0-9ubuntu1), libltdl7 (= 2.4.7-7), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmagickcore-6.q16-6 (= 8:6.9.11.60+dfsg-1.6ubuntu1), libmagickwand-6.q16-6 (= 8:6.9.11.60+dfsg-1.6ubuntu1), libmbedcrypto7 (= 2.28.5-1), libmbedtls14 (= 2.28.5-1), libmbedx509-1 (= 2.28.5-1), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmysqlclient21 (= 8.0.35-1ubuntu2), libncurses6 (= 6.4+20231209-1), libncursesw6 (= 6.4+20231209-1), libnetpbm11 (= 2:11.04.05-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libopenblas-dev (= 0.3.25+ds-1), libopenblas-pthread-dev (= 0.3.25+ds-1), libopenblas0 (= 0.3.25+ds-1), libopenblas0-pthread (= 0.3.25+ds-1), libopenjp2-7 (= 2.5.0-2), libp11-kit0 (= 0.25.3-2ubuntu2), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libpcre2-8-0 (= 10.42-4ubuntu1), libpdfbox-java (= 1:1.8.16-5), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.40-2), libpotrace0 (= 1.16-2), libpq5 (= 16.1-1build1), libpsl5 (= 0.21.2-1build1), libptexenc1 (= 2023.20230311.66589-8build1), libpython3-all-dev (= 3.11.4-5ubuntu1), libpython3-dev (= 3.11.4-5ubuntu1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11 (= 3.11.7-2), libpython3.11-dev (= 3.11.7-2), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libpython3.12 (= 3.12.1-2), libpython3.12-dev (= 3.12.1-2), libpython3.12-minimal (= 3.12.1-2), libpython3.12-stdlib (= 3.12.1-2), libqhull-r8.0 (= 2020.2-6), libraqm0 (= 0.10.1-1), libreadline8 (= 8.2-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.39.2-6ubuntu1), libsqlite3-0 (= 3.44.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsynctex2 (= 2023.20230311.66589-8build1), libsystemd0 (= 255-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtcl8.6 (= 8.6.13+dfsg-2), libteckit0 (= 2.5.11+ds1-1), libtexlua53-5 (= 2023.20230311.66589-8build1), libtiff6 (= 4.5.1+git230720-1ubuntu1), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9ubuntu1), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libwebp7 (= 1.3.2-0.3), libwebpdemux2 (= 1.3.2-0.3), libwebpmux3 (= 1.3.2-0.3), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1build5), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxi6 (= 2:1.8-1build1), libxml2 (= 2.9.14+dfsg-1.3build3), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.17-1), libxrender1 (= 1:0.9.10-1.1), libxsimd-dev (= 10.0.0-3), libxslt1.1 (= 1.1.35-1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1.1), libzstd1 (= 1.5.5+dfsg2-2), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), mafft (= 7.505-1), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), mysql-common (= 5.8+1.1.0), ncbi-blast+ (= 2.12.0+ds-4), ncbi-data (= 6.1.20170106+dfsg1-10), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), netpbm (= 2:11.04.05-2), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), phylip (= 1:3.697+dfsg-3), po-debconf (= 1.0.21+nmu1), poppler-data (= 0.4.12-1), prank (= 0.0.170427+dfsg-3), preview-latex-style (= 13.2-1), probcons (= 1.12-14), python-matplotlib-data (= 3.6.3-1ubuntu3), python3 (= 3.11.4-5ubuntu1), python3-all (= 3.11.4-5ubuntu1), python3-all-dev (= 3.11.4-5ubuntu1), python3-appdirs (= 1.4.4-4), python3-attr (= 23.1.0-2), python3-beniget (= 0.4.1-3), python3-brotli (= 1.1.0-2), python3-cairo (= 1.25.1-1), python3-chardet (= 5.2.0+dfsg-1), python3-contourpy (= 1.0.7-1build2), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.2-3), python3-decorator (= 5.1.1-5), python3-dev (= 3.11.4-5ubuntu1), python3-distutils (= 3.11.5-1), python3-fonttools (= 4.46.0-1), python3-freetype (= 2.4.0-1), python3-fs (= 2.4.16-2), python3-gast (= 0.5.2-2), python3-isodate (= 0.6.1-1), python3-kiwisolver (= 1.4.4-1build2), python3-lib2to3 (= 3.11.5-1), python3-lxml (= 4.9.3-1build1), python3-lz4 (= 4.0.2+dfsg-1build2), python3-matplotlib (= 3.6.3-1ubuntu3), python3-minimal (= 3.11.4-5ubuntu1), python3-mmtf (= 1.1.3-1), python3-mpmath (= 1.2.1-2), python3-msgpack (= 1.0.3-3build1), python3-mysqldb (= 1.4.6-2build2), python3-networkx (= 2.8.8-1ubuntu1), python3-numpy (= 1:1.24.2-2), python3-packaging (= 23.2-1), python3-pil (= 10.1.0-1), python3-pil.imagetk (= 10.1.0-1), python3-pkg-resources (= 68.1.2-2), python3-ply (= 3.11-6), python3-psycopg2 (= 2.9.9-1), python3-pygments (= 2.15.1+dfsg-1), python3-pyparsing (= 3.1.1-1), python3-pythran (= 0.14.0+ds-4), python3-rdflib (= 6.1.1-2), python3-reportlab (= 4.0.8-1), python3-rlpycairo (= 0.3.0-3), python3-scipy (= 1.10.1-6), python3-setuptools (= 68.1.2-2), python3-six (= 1.16.0-4), python3-sympy (= 1.12-6), python3-tk (= 3.11.5-1), python3-tz (= 2023.3.post1-2), python3-ufolib2 (= 0.16.0+dfsg1-1), python3.11 (= 3.11.7-2), python3.11-dev (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), python3.12 (= 3.12.1-2), python3.12-dev (= 3.12.1-2), python3.12-minimal (= 3.12.1-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), samtools (= 1.19-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), t-coffee (= 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1), t1utils (= 1.41-4build2), tar (= 1.34+dfsg-1.2ubuntu2), tex-common (= 6.18), texlive-base (= 2023.20231207-1), texlive-binaries (= 2023.20230311.66589-8build1), texlive-fonts-recommended (= 2023.20231207-1), texlive-latex-base (= 2023.20231207-1), texlive-latex-extra (= 2023.20231207-3), texlive-latex-recommended (= 2023.20231207-1), texlive-pictures (= 2023.20231207-1), tk8.6-blt2.5 (= 2.5.3+dfsg-7), tzdata (= 2023c-9ubuntu1), ucf (= 3.0043+nmu1), unicode-data (= 15.1.0-1), util-linux (= 2.39.2-6ubuntu1), wise (= 2.4.1-23), wise-data (= 2.4.1-23), x11-common (= 1:7.7+23ubuntu2), xdg-utils (= 1.1.3-4.1ubuntu3), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702994806" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-biopython_1.81+dfsg-3_arm64.deb --------------------------------------- new Debian package, version 2.0. size 1664004 bytes: control archive=18417 bytes. 1533 bytes, 27 lines control 65003 bytes, 686 lines md5sums 281 bytes, 12 lines * postinst #!/bin/sh 394 bytes, 12 lines * prerm #!/bin/sh Package: python3-biopython Source: python-biopython Version: 1.81+dfsg-3 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 12592 Depends: python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3 (<< 3.13), python3 (>= 3.11~), python3:any, libc6 (>= 2.17), python3-reportlab (>= 4.0.4-1~), w3c-sgml-lib Recommends: python-biopython-doc (= 1.81+dfsg-3), ncbi-blast+ (>= 2.10.1-3) Suggests: python3-tk, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle3, phylip, phyml, prank, probcons, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-scipy, raxml, samtools, t-coffee, wise Breaks: ncbi-acc-download (<< 0.2.7-2~) Section: python Priority: optional Homepage: https://biopython.org Description: Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. drwxr-xr-x root/root 0 2023-12-19 14:06 ./ drwxr-xr-x root/root 0 2023-12-19 14:06 ./usr/ drwxr-xr-x root/root 0 2023-12-19 14:06 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-19 14:06 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-12-19 14:06 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-12-19 14:06 ./usr/lib/python3/dist-packages/Bio/ drwxr-xr-x root/root 0 2023-12-19 14:06 ./usr/lib/python3/dist-packages/Bio/Affy/ -rw-r--r-- root/root 23670 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Affy/CelFile.py -rw-r--r-- root/root 296 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Affy/__init__.py drwxr-xr-x root/root 0 2023-12-19 14:06 ./usr/lib/python3/dist-packages/Bio/Align/ -rw-r--r-- root/root 22468 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Align/AlignInfo.py drwxr-xr-x root/root 0 2023-12-19 14:06 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./usr/lib/python3/dist-packages/Bio/Align/Applications/_TCoffee.py -rw-r--r-- root/root 1193 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Align/Applications/__init__.py -rw-r--r-- root/root 139236 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Align/__init__.py -rw-r--r-- root/root 235898 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.c -rw-r--r-- root/root 203720 2023-12-19 14:06 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-aarch64-linux-gnu.so -rw-r--r-- root/root 203752 2023-12-19 14:06 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so -rw-r--r-- root/root 4531 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Align/a2m.py -rw-r--r-- root/root 9271 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Align/bed.py -rw-r--r-- root/root 26541 2023-02-13 03:07 ./usr/lib/python3/dist-packages/Bio/Align/bigbed.py -rw-r--r-- root/root 1834 2023-02-13 03:07 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2023-12-19 14:06 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 188 2023-12-19 14:06 ./usr/share/lintian/overrides/python3-biopython +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 592100 Build-Time: 894 Distribution: noble-proposed Host Architecture: arm64 Install-Time: 155 Job: python-biopython_1.81+dfsg-3.dsc Machine Architecture: arm64 Package: python-biopython Package-Time: 1051 Source-Version: 1.81+dfsg-3 Space: 592100 Status: successful Version: 1.81+dfsg-3 -------------------------------------------------------------------------------- Finished at 2023-12-19T23:37:50Z Build needed 00:17:31, 592100k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578503 Scanning for processes to kill in build PACKAGEBUILD-27578503