https://launchpad.net/ubuntu/+source/python-cobra/0.18.0-3/+build/19294005
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux bos02-arm64-041 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64
Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2.
Syncing the system clock with the buildd NTP service...
12 May 17:30:19 ntpdate[1921]: adjust time server 10.211.37.1 offset 0.002510 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19294005 --image-type chroot /home/buildd/filecache-default/a77e1afdcf3761e08e999e63510e3d2f5c5a8a8d
Creating target for build PACKAGEBUILD-19294005
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19294005
Starting target for build PACKAGEBUILD-19294005
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19294005 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe'
Overriding sources.list in build-PACKAGEBUILD-19294005
RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19294005
Updating target for build PACKAGEBUILD-19294005
Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB]
Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB]
Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB]
Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB]
Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [935 kB]
Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB]
Get:7 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [8419 kB]
Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5174 kB]
Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf Packages [71.3 kB]
Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [36.8 kB]
Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf Packages [523 kB]
Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [327 kB]
Fetched 16.6 MB in 6s (2952 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  apt base-files cpp-9 dash debconf e2fsprogs g++-9 gcc-10-base gcc-9
  gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapt-pkg6.0 libasan5
  libatomic1 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1
  libcryptsetup12 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0
  libncurses6 libncursesw6 libperl5.30 libprocps8 libsqlite3-0 libss2
  libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1
  linux-libc-dev logsave make ncurses-base ncurses-bin perl perl-base
  perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd
  sysvinit-utils tzdata
55 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 41.4 MB of archives.
After this operation, 90.1 kB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcrypt-dev armhf 1:4.4.15-1ubuntu1 [120 kB]
Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcrypt1 armhf 1:4.4.15-1ubuntu1 [93.4 kB]
Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu7 [59.7 kB]
Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf libperl5.30 armhf 5.30.0-10 [3295 kB]
Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf perl armhf 5.30.0-10 [224 kB]
Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf perl-base armhf 5.30.0-10 [1408 kB]
Get:7 http://ftpmaster.internal/ubuntu groovy/main armhf perl-modules-5.30 all 5.30.0-10 [2738 kB]
Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf debconf all 1.5.74 [121 kB]
Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf dash armhf 0.5.10.2-7 [79.2 kB]
Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-bin armhf 6.2-1 [164 kB]
Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-base all 6.2-1 [18.7 kB]
Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf sysvinit-utils armhf 2.96-3ubuntu1 [19.1 kB]
Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libubsan1 armhf 10.1.0-1ubuntu1 [122 kB]
Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgomp1 armhf 10.1.0-1ubuntu1 [86.9 kB]
Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-10-base armhf 10.1.0-1ubuntu1 [19.3 kB]
Get:16 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgcc-s1 armhf 10.1.0-1ubuntu1 [36.3 kB]
Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcc1-0 armhf 10.1.0-1ubuntu1 [34.6 kB]
Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libatomic1 armhf 10.1.0-1ubuntu1 [7196 B]
Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libstdc++6 armhf 10.1.0-1ubuntu1 [440 kB]
Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-sysv armhf 245.5-2ubuntu1 [10.3 kB]
Get:21 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-timesyncd armhf 245.5-2ubuntu1 [27.9 kB]
Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libacl1 armhf 2.2.53-8 [16.0 kB]
Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf libcap2 armhf 1:2.33-1 [15.7 kB]
Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libcryptsetup12 armhf 2:2.3.1-1ubuntu1 [172 kB]
Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf libidn2-0 armhf 2.3.0-1 [49.9 kB]
Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf systemd armhf 245.5-2ubuntu1 [3644 kB]
Get:27 http://ftpmaster.internal/ubuntu groovy/main armhf libsystemd0 armhf 245.5-2ubuntu1 [249 kB]
Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf libudev1 armhf 245.5-2ubuntu1 [70.1 kB]
Get:29 http://ftpmaster.internal/ubuntu groovy/main armhf libapt-pkg6.0 armhf 2.1.1 [756 kB]
Get:30 http://ftpmaster.internal/ubuntu groovy/main armhf gpgv armhf 2.2.20-1ubuntu1 [170 kB]
Get:31 http://ftpmaster.internal/ubuntu groovy/main armhf apt armhf 2.1.1 [1245 kB]
Get:32 http://ftpmaster.internal/ubuntu groovy/main armhf logsave armhf 1.45.6-1ubuntu1 [9676 B]
Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf libext2fs2 armhf 1.45.6-1ubuntu1 [170 kB]
Get:34 http://ftpmaster.internal/ubuntu groovy/main armhf e2fsprogs armhf 1.45.6-1ubuntu1 [510 kB]
Get:35 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses6 armhf 6.2-1 [79.7 kB]
Get:36 http://ftpmaster.internal/ubuntu groovy/main armhf libncursesw6 armhf 6.2-1 [106 kB]
Get:37 http://ftpmaster.internal/ubuntu groovy/main armhf libtinfo6 armhf 6.2-1 [73.6 kB]
Get:38 http://ftpmaster.internal/ubuntu groovy/main armhf libcom-err2 armhf 1.45.6-1ubuntu1 [8708 B]
Get:39 http://ftpmaster.internal/ubuntu groovy/main armhf libprocps8 armhf 2:3.3.16-4ubuntu1 [29.9 kB]
Get:40 http://ftpmaster.internal/ubuntu groovy/main armhf libss2 armhf 1.45.6-1ubuntu1 [9384 B]
Get:41 http://ftpmaster.internal/ubuntu groovy/main armhf procps armhf 2:3.3.16-4ubuntu1 [222 kB]
Get:42 http://ftpmaster.internal/ubuntu groovy/main armhf libsqlite3-0 armhf 3.31.1-5 [467 kB]
Get:43 http://ftpmaster.internal/ubuntu groovy/main armhf tzdata all 2020a-0ubuntu1 [293 kB]
Get:44 http://ftpmaster.internal/ubuntu groovy/main armhf libasan5 armhf 9.3.0-12ubuntu1 [386 kB]
Get:45 http://ftpmaster.internal/ubuntu groovy/main armhf g++-9 armhf 9.3.0-12ubuntu1 [6690 kB]
Get:46 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-9 armhf 9.3.0-12ubuntu1 [6555 kB]
Get:47 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++-9-dev armhf 9.3.0-12ubuntu1 [1782 kB]
Get:48 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-9-dev armhf 9.3.0-12ubuntu1 [686 kB]
Get:49 http://ftpmaster.internal/ubuntu groovy/main armhf cpp-9 armhf 9.3.0-12ubuntu1 [5880 kB]
Get:50 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-9-base armhf 9.3.0-12ubuntu1 [19.5 kB]
Get:51 http://ftpmaster.internal/ubuntu groovy/main armhf gpg armhf 2.2.20-1ubuntu1 [427 kB]
Get:52 http://ftpmaster.internal/ubuntu groovy/main armhf gpgconf armhf 2.2.20-1ubuntu1 [107 kB]
Get:53 http://ftpmaster.internal/ubuntu groovy/main armhf gpg-agent armhf 2.2.20-1ubuntu1 [195 kB]
Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf linux-libc-dev armhf 5.4.0-29.33 [1081 kB]
Get:55 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf make armhf 4.2.1-2 [150 kB]
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Current default time zone: 'Etc/UTC'
Local time is now:      Tue May 12 17:30:52 UTC 2020.
Universal Time is now:  Tue May 12 17:30:52 UTC 2020.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Installing new version of config file /etc/mke2fs.conf ...
Setting up libasan5:armhf (9.3.0-12ubuntu1) ...
Setting up perl (5.30.0-10) ...
Setting up procps (2:3.3.16-4ubuntu1) ...
Installing new version of config file /etc/sysctl.conf ...
Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ...
Setting up cpp-9 (9.3.0-12ubuntu1) ...
Setting up libgcc-9-dev:armhf (9.3.0-12ubuntu1) ...
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Setting up libstdc++-9-dev:armhf (9.3.0-12ubuntu1) ...
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Initializing machine ID from KVM UUID.
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Processing triggers for libc-bin (2.31-0ubuntu9) ...
RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19294005 armhf groovy-proposed -c chroot:build-PACKAGEBUILD-19294005 --arch=armhf --dist=groovy-proposed --nolog python-cobra_0.18.0-3.dsc
Initiating build PACKAGEBUILD-19294005 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 armv7l
sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-041.buildd

+==============================================================================+
| python-cobra 0.18.0-3 (armhf)                              12 May 2020 17:30 |
+==============================================================================+

Package: python-cobra
Version: 0.18.0-3
Source Version: 0.18.0-3
Distribution: groovy-proposed
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/python-cobra-LXBjlq/python-cobra-0.18.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-LXBjlq' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19294005/chroot-autobuild' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

python-cobra_0.18.0-3.dsc exists in .; copying to chroot

Check architectures
-------------------


Check dependencies
------------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
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Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: debhelper-compat (= 12), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib
Filtered Build-Depends: debhelper-compat (= 12), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-Q5u_Me/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
Ign:1 copy:/<<BUILDDIR>>/resolver-Q5u_Me/apt_archive ./ InRelease
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+------------------------------------------------------------------------------+
| Install python-cobra build dependencies (apt-based resolver)                 |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
  gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
  libblas-dev libblas3 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3
  libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1
  libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5
  libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3
  libicu66 libjs-jquery libjs-jquery-ui libklu1 liblapack-dev liblapack3
  libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libmpdec2
  libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib
  librbio2 libsbml5 libsigsegv2 libspqr2 libsub-override-perl
  libsuitesparse-dev libsuitesparseconfig5 libtool libuchardet0 libumfpack5
  libxml2 m4 man-db mime-support node-jquery po-debconf python-matplotlib-data
  python-pip-whl python3 python3-all python3-all-dev python3-atomicwrites
  python3-attr python3-certifi python3-chardet python3-cpuinfo python3-cycler
  python3-dateutil python3-depinfo python3-dev python3-distutils
  python3-future python3-idna python3-importlib-metadata python3-jsonschema
  python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
  python3-more-itertools python3-mpmath python3-numpy python3-optlang
  python3-packaging python3-pandas python3-pandas-lib python3-pip
  python3-pipdeptree python3-pkg-resources python3-pluggy python3-py
  python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark
  python3-requests python3-ruamel.yaml python3-sbml5 python3-setuptools
  python3-simplejson python3-six python3-swiglpk python3-sympy
  python3-tabulate python3-tz python3-urllib3 python3-wcwidth python3-wheel
  python3-zipp python3.8 python3.8-dev python3.8-minimal swig swig4.0
  ttf-bitstream-vera zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
  groff liblapack-doc libiodbc2-dev default-libmysqlclient-dev gmp-doc
  libgmp10-doc libmpfr-dev libjs-jquery-ui-docs libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
  python-cycler-doc python-future-doc python-jsonschema-doc dvipng ffmpeg
  gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common
  python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
  python3-gobject python3-nose python3-pyqt5 python3-scipy python3-sip
  python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
  python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-numpy-dbg
  python-pandas-doc python3-statsmodels subversion python-pyparsing-doc
  python3-cryptography python3-openssl python3-socks python-requests-doc
  python-setuptools-doc texlive-fonts-extra python-sympy-doc python3.8-venv
  python3.8-doc binfmt-support swig-doc swig-examples swig4.0-examples
  swig4.0-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl
  python3-pil python3-tk python3-scipy python3-numexpr python3-tables
  python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib
  python3-lxml python3-elasticsearch python3-freezegun python3-pygal ipython3
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
  gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
  libblas-dev libblas3 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3
  libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1
  libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5
  libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3
  libicu66 libjs-jquery libjs-jquery-ui libklu1 liblapack-dev liblapack3
  libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libmpdec2
  libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib
  librbio2 libsbml5 libsigsegv2 libspqr2 libsub-override-perl
  libsuitesparse-dev libsuitesparseconfig5 libtool libuchardet0 libumfpack5
  libxml2 m4 man-db mime-support node-jquery po-debconf python-matplotlib-data
  python-pip-whl python3 python3-all python3-all-dev python3-atomicwrites
  python3-attr python3-certifi python3-chardet python3-cpuinfo python3-cycler
  python3-dateutil python3-depinfo python3-dev python3-distutils
  python3-future python3-idna python3-importlib-metadata python3-jsonschema
  python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
  python3-more-itertools python3-mpmath python3-numpy python3-optlang
  python3-packaging python3-pandas python3-pandas-lib python3-pip
  python3-pipdeptree python3-pkg-resources python3-pluggy python3-py
  python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark
  python3-requests python3-ruamel.yaml python3-sbml5 python3-setuptools
  python3-simplejson python3-six python3-swiglpk python3-sympy
  python3-tabulate python3-tz python3-urllib3 python3-wcwidth python3-wheel
  python3-zipp python3.8 python3.8-dev python3.8-minimal
  sbuild-build-depends-python-cobra-dummy swig swig4.0 ttf-bitstream-vera
  zlib1g-dev
0 upgraded, 140 newly installed, 0 to remove and 0 not upgraded.
Need to get 74.5 MB of archives.
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Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libpython3.8-minimal armhf 3.8.2-1ubuntu1.1 [697 kB]
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Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf mime-support all 3.64ubuntu1 [30.6 kB]
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Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libuchardet0 armhf 0.0.6-3build1 [62.4 kB]
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Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB]
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Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf file armhf 1:5.38-4 [22.4 kB]
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Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libglib2.0-0 armhf 2.64.2-1 [1123 kB]
Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf libicu66 armhf 66.1-2ubuntu2 [8222 kB]
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Get:81 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf node-jquery all 3.5.1+dfsg-3 [309 kB]
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Get:92 http://ftpmaster.internal/ubuntu groovy/main armhf python3-all armhf 3.8.2-0ubuntu2 [1100 B]
Get:93 http://ftpmaster.internal/ubuntu groovy/main armhf python3.8-dev armhf 3.8.2-1ubuntu1.1 [515 kB]
Get:94 http://ftpmaster.internal/ubuntu groovy/main armhf python3-dev armhf 3.8.2-0ubuntu2 [1212 B]
Get:95 http://ftpmaster.internal/ubuntu groovy/main armhf python3-all-dev armhf 3.8.2-0ubuntu2 [1112 B]
Get:96 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-atomicwrites all 1.3.0-1 [10.0 kB]
Get:97 http://ftpmaster.internal/ubuntu groovy/main armhf python3-attr all 19.3.0-4 [33.9 kB]
Get:98 http://ftpmaster.internal/ubuntu groovy/main armhf python3-certifi all 2020.4.5.1-1 [151 kB]
Get:99 http://ftpmaster.internal/ubuntu groovy/main armhf python3-chardet all 3.0.4-7 [80.2 kB]
Get:100 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-cpuinfo all 5.0.0-2 [17.3 kB]
Get:101 http://ftpmaster.internal/ubuntu groovy/main armhf python3-six all 1.14.0-3 [12.1 kB]
Get:102 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-cycler all 0.10.0-3 [8132 B]
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Get:106 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pip all 20.1-2 [247 kB]
Get:107 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pipdeptree armhf 0.13.2-1build1 [13.9 kB]
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Get:110 http://ftpmaster.internal/ubuntu groovy/main armhf python3-idna all 2.9-1 [35.0 kB]
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Get:114 http://ftpmaster.internal/ubuntu groovy/main armhf python3-pyrsistent armhf 0.15.5-1build1 [49.5 kB]
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Get:116 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-kiwisolver armhf 1.0.1-3build1 [54.6 kB]
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Get:118 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf python3-numpy armhf 1:1.18.4-1 [3093 kB]
Get:119 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-matplotlib armhf 3.1.2-1ubuntu4 [4391 kB]
Get:120 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-mpmath all 1.1.0-2 [400 kB]
Get:121 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-swiglpk armhf 4.65.0-2build1 [56.9 kB]
Get:122 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-sympy all 1.5.1-2.1 [3798 kB]
Get:123 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-optlang all 1.4.4-2 [67.8 kB]
Get:124 http://ftpmaster.internal/ubuntu groovy/main armhf python3-packaging all 20.3-1.2 [26.9 kB]
Get:125 http://ftpmaster.internal/ubuntu groovy/main armhf python3-tz all 2019.3-2 [24.5 kB]
Get:126 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pandas-lib armhf 0.25.3+dfsg2-2 [4095 kB]
Get:127 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pandas all 0.25.3+dfsg2-2 [1967 kB]
Get:128 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pluggy all 0.13.0-4 [18.5 kB]
Get:129 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-py all 1.8.1-2 [65.4 kB]
Get:130 http://ftpmaster.internal/ubuntu groovy/main armhf python3-wcwidth all 0.1.9+dfsg1-1 [17.7 kB]
Get:131 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pytest all 4.6.9-3 [178 kB]
Get:132 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pytest-benchmark all 3.2.2-2 [41.7 kB]
Get:133 http://ftpmaster.internal/ubuntu groovy/main armhf python3-urllib3 all 1.25.9-1 [88.8 kB]
Get:134 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf python3-requests all 2.23.0+dfsg-2 [50.9 kB]
Get:135 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-ruamel.yaml armhf 0.15.89-3build1 [210 kB]
Get:136 http://ftpmaster.internal/ubuntu groovy/universe armhf swig4.0 armhf 4.0.1-5build1 [1030 kB]
Get:137 http://ftpmaster.internal/ubuntu groovy/universe armhf swig all 4.0.1-5build1 [5528 B]
Get:138 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-sbml5 armhf 5.18.0+dfsg-2 [2863 kB]
Get:139 http://ftpmaster.internal/ubuntu groovy/main armhf python3-simplejson armhf 3.17.0-1 [48.5 kB]
Get:140 http://ftpmaster.internal/ubuntu groovy/main armhf python3-tabulate all 0.8.6-0ubuntu2 [31.7 kB]
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/usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:892: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if other is 0:
/usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:986: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if other is 0:
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Setting up gettext (0.19.8.1-10build1) ...
Setting up python3-setuptools (46.1.3-1) ...
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Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer.
Setting up python3-sbml5 (5.18.0+dfsg-2) ...
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update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
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/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
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Setting up python3-matplotlib (3.1.2-1ubuntu4) ...
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Setting up debhelper (13ubuntu1) ...
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Processing triggers for libc-bin (2.31-0ubuntu9) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-177-generic arm64 (armv7l)
Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-12ubuntu1 gcc-9_9.3.0-12ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-12ubuntu1 libstdc++6_10.1.0-1ubuntu1 linux-libc-dev_5.4.0-29.33
Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-arm-linux-gnueabihf_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-12ubuntu1 cython3_0.29.14-0.1ubuntu3 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9 file_1:5.38-4 findutils_4.7.0-1ubuntu1 fonts-lyx_2.3.4.2-2 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-12ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10.1.0-1ubuntu1 gcc-9_9.3.0-12ubuntu1 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python3-idna_2.9-1 python3-importlib-metadata_1.6.0-1 python3-jsonschema_3.2.0-0ubuntu2 python3-kiwisolver_1.0.1-3build1 python3-lib2to3_3.8.2-1ubuntu1 python3-matplotlib_3.1.2-1ubuntu4 python3-minimal_3.8.2-0ubuntu2 python3-more-itertools_4.2.0-2 python3-mpmath_1.1.0-2 python3-numpy_1:1.18.4-1 python3-optlang_1.4.4-2 python3-packaging_20.3-1.2 python3-pandas_0.25.3+dfsg2-2 python3-pandas-lib_0.25.3+dfsg2-2 python3-pip_20.1-2 python3-pipdeptree_0.13.2-1build1 python3-pkg-resources_46.1.3-1 python3-pluggy_0.13.0-4 python3-py_1.8.1-2 python3-pyparsing_2.4.7-1 python3-pyrsistent_0.15.5-1build1 python3-pytest_4.6.9-3 python3-pytest-benchmark_3.2.2-2 python3-requests_2.23.0+dfsg-2 python3-ruamel.yaml_0.15.89-3build1 python3-sbml5_5.18.0+dfsg-2 python3-setuptools_46.1.3-1 python3-simplejson_3.17.0-1 python3-six_1.14.0-3 python3-swiglpk_4.65.0-2build1 python3-sympy_1.5.1-2.1 python3-tabulate_0.8.6-0ubuntu2 python3-tz_2019.3-2 python3-urllib3_1.25.9-1 python3-wcwidth_0.1.9+dfsg1-1 python3-wheel_0.34.2-1 python3-zipp_1.0.0-2 python3.8_3.8.2-1ubuntu1.1 python3.8-dev_3.8.2-1ubuntu1.1 python3.8-minimal_3.8.2-1ubuntu1.1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5build1 swig4.0_4.0.1-5build1 systemd_245.5-2ubuntu1 systemd-sysv_245.5-2ubuntu1 systemd-timesyncd_245.5-2ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 ttf-bitstream-vera_1.10-8 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Tue May 12 07:53:23 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.18.0-3.dsc
dpkg-source: info: extracting python-cobra in python-cobra-0.18.0
dpkg-source: info: unpacking python-cobra_0.18.0.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.18.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19294005
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19294005
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-19294005
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.18.0-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.8 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_core_reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_annotation_format.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_annotation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_notes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/test_reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/test_model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/test_metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build; python3.8 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.8.2, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
plugins: benchmark-3.2.2
collected 295 items

cobra/test/test_manipulation.py ...........                              [  3%]
cobra/test/test_medium.py .................                              [  9%]
cobra/test/test_core/test_configuration.py ......                        [ 11%]
cobra/test/test_core/test_core_reaction.py ......ss..................... [ 21%]
...................x....                                                 [ 29%]
cobra/test/test_core/test_dictlist.py ......................             [ 36%]
cobra/test/test_core/test_gene.py .                                      [ 37%]
cobra/test/test_core/test_group.py ..                                    [ 37%]
cobra/test/test_core/test_metabolite.py ...ss.ss.                        [ 41%]
cobra/test/test_core/test_model.py ..................................... [ 53%]
............................s..s.ss.                                     [ 65%]
cobra/test/test_core/test_solution.py .ss                                [ 66%]
cobra/test/test_core/test_summary/test_metabolite_summary.py ........    [ 69%]
cobra/test/test_core/test_summary/test_model_summary.py ..........       [ 72%]
cobra/test/test_core/test_summary/test_reaction_summary.py ss..          [ 74%]
cobra/test/test_io/test_annotation.py ..                                 [ 74%]
cobra/test/test_io/test_annotation_format.py ..                          [ 75%]
cobra/test/test_io/test_io_order.py ...........................          [ 84%]
cobra/test/test_io/test_json.py x.x                                      [ 85%]
cobra/test/test_io/test_mat.py ss                                        [ 86%]
cobra/test/test_io/test_notes.py .                                       [ 86%]
cobra/test/test_io/test_pickle.py .s.s                                   [ 88%]
cobra/test/test_io/test_sbml.py ............xxxx.x.x..s..........        [ 99%]
cobra/test/test_io/test_yaml.py .x                                       [100%]

=============================== warnings summary ===============================
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3
  /usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working

/usr/share/python-wheels/toml-0.10.0-py2.py3-none-any.whl/toml/decoder.py:47
/usr/share/python-wheels/toml-0.10.0-py2.py3-none-any.whl/toml/decoder.py:47
  /usr/share/python-wheels/toml-0.10.0-py2.py3-none-any.whl/toml/decoder.py:47 DeprecationWarning: invalid escape sequence \.

cobra/core/dictlist.py:213
  cobra/core/dictlist.py:213 SyntaxWarning: "is" with a literal. Did you mean "=="?

cobra/core/gene.py:249
  cobra/core/gene.py:249 DeprecationWarning: invalid escape sequence \(

cobra/core/gene.py:268
  cobra/core/gene.py:268 DeprecationWarning: invalid escape sequence \(

cobra/core/reaction.py:40
  cobra/core/reaction.py:40 DeprecationWarning: invalid escape sequence \s

cobra/flux_analysis/gapfilling.py:13
  cobra/flux_analysis/gapfilling.py:13 DeprecationWarning: invalid escape sequence \s

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_escape_ids
  /usr/lib/python3/dist-packages/optlang/interface.py:1358 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_gene_knock_out
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_make_lhs_irreversible_reversible
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_context
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_from_other_model
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_cobra_reaction
  cobra/core/model.py:524 DeprecationWarning: add_reaction deprecated. Use add_reactions instead

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
  cobra/core/model.py:287 DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_1
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -9. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of 2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -10. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -11. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_2
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_make_irreversible_irreversible_to_the_other_side
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PFK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_knockout
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of 8.39. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALDt' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACKr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACONTa' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACONTb' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ADK1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'AKGDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'AKGt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ALCD2x' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ATPS4r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'CO2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'CS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'CYTBD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'D_LACt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ENO' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ETOHt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_ac_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_acald_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_akg_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_co2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_for_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_fru_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_fum_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_h_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_o2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_pi_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_succ_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FBA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FBP' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FORt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FORti' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FRD7' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FRUpts2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FUM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FUMt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'G6PDH2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GAPD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLCpts' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLNS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLNabc' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUDy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUN' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUSy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GND' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'H2Ot' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ICDHyr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ICL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'LDH_D' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'MALS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'MALt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'MDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ME1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ME2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'NADH16' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'NADTRHD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'NH4t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'O2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PFK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PFL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PIt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PPC' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PPCK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PPS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PTAr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PYK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PYRt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'RPE' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'RPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCCt3' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCDi' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCOAS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TALA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'THD2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TKT1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TKT2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
  cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALDt' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACKr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACONTa' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACONTb' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ADK1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'AKGDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'AKGt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ALCD2x' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of -91.61. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ATPS4r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'CO2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'CS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'CYTBD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'D_LACt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ENO' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ETOHt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_ac_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_acald_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_akg_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_co2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_for_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_fru_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_fum_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of -110.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_h_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_o2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_pi_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_succ_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FBA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FBP' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FORt2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FORti' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FRD7' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FRUpts2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FUM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FUMt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'G6PDH2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GAPD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLCpts' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLNS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLNabc' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUDy' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUN' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUSy' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GND' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'H2Ot' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ICDHyr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ICL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'LDH_D' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'MALS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'MALt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'MDH' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ME1' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ME2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'NADH16' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'NADTRHD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'NH4t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'O2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PFL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGK' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PIt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PPC' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PPCK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PPS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PTAr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PYK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PYRt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'RPE' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'RPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCCt3' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCDi' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCOAS' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TALA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'THD2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TKT1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TKT2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
  cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete
  cobra/core/reaction.py:598 DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements
  cobra/core/group.py:110 UserWarning: need to pass in a list

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements
  cobra/core/gene.py:237 UserWarning: Use cobra.manipulation.remove_genes instead

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models
  cobra/core/model.py:307 DeprecationWarning: use model.merge instead

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models
  cobra/core/model.py:317 DeprecationWarning: use model.merge instead

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table_previous_solution[optlang-glpk-q8_c]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table[optlang-glpk-q8_c-False]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table[optlang-glpk-q8_c-True]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table_with_fva[optlang-glpk-0.99-fdp_c]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_previous_solution[optlang-glpk-False]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_previous_solution[optlang-glpk-True]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table[optlang-glpk-False]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table[optlang-glpk-True]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_with_fva[optlang-glpk-0.95]
  cobra/core/summary/summary.py:206 UserWarning: Setting float_format to anything other than None will cause nan to be present in the output.

.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py::test_load_json_model
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py::test_read_pickle[load_function0]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Gz]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Gz]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Bz2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Bz2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[cobra]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_filehandle
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_from_sbml_string
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py::test_load_yaml_model
  cobra/util/solver.py:416 UserWarning: solver status is 'infeasible'

-- Docs: https://docs.pytest.org/en/latest/warnings.html


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------------------------------------------------------------------------------------------------------------------ benchmark: 21 tests -------------------------------------------------------------------------------------------------------------------
Name (time in us)                                         Min                       Max                      Mean                  StdDev                    Median                     IQR            Outliers          OPS            Rounds  Iterations
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[gurobi]            21.3220 (1.0)             89.1480 (1.49)            23.7755 (1.06)           5.2844 (1.91)            22.0020 (1.0)            0.6800 (2.13)      107;200  42,060.0900 (0.94)       1083           1
test_subtract_metabolite_benchmark[cplex]             21.4420 (1.01)            60.0250 (1.0)             22.4581 (1.0)            2.7603 (1.0)             22.0420 (1.00)           0.3400 (1.06)        33;76  44,527.3795 (1.0)        1137           1
test_subtract_metabolite_benchmark[glpk]              21.8420 (1.02)            78.9460 (1.32)            22.9206 (1.02)           3.6900 (1.34)            22.4010 (1.02)           0.3200 (1.0)         23;69  43,628.8570 (0.98)       1040           1
test_change_objective_benchmark[gurobi]            1,208.7550 (56.69)        1,761.5400 (29.35)        1,268.6029 (56.49)         65.9420 (23.89)        1,232.0340 (56.00)         91.7010 (286.57)     156;27     788.2687 (0.02)       1206           1
test_change_objective_benchmark[cplex]             1,208.7910 (56.69)        1,732.3760 (28.86)        1,259.3226 (56.07)         57.4297 (20.81)        1,228.4710 (55.83)         87.4157 (273.17)     183;11     794.0777 (0.02)       1043           1
test_change_objective_benchmark[glpk]              1,208.8510 (56.70)        1,700.2740 (28.33)        1,258.7587 (56.05)         51.4564 (18.64)        1,231.1900 (55.96)         83.5348 (261.05)      271;9     794.4334 (0.02)       1201           1
test_add_remove_reaction_benchmark[glpk]           1,920.1020 (90.05)        2,348.4780 (39.12)        2,000.7272 (89.09)         49.7543 (18.03)        1,992.7870 (90.57)         36.5480 (114.21)      47;14     499.8183 (0.01)        329           1
test_add_remove_reaction_benchmark[gurobi]         1,939.9440 (90.98)        7,515.2360 (125.20)       2,017.1515 (89.82)        302.1486 (109.46)       1,989.8280 (90.44)         31.2620 (97.69)        3;16     495.7486 (0.01)        344           1
test_add_remove_reaction_benchmark[cplex]          1,945.9050 (91.26)        3,063.7990 (51.04)        2,036.3012 (90.67)         74.7413 (27.08)        2,022.7315 (91.93)         57.5250 (179.77)      31;12     491.0865 (0.01)        330           1
test_benchmark_medium_mip                         41,844.7620 (>1000.0)     51,263.1270 (854.03)      43,481.8021 (>1000.0)    2,857.5202 (>1000.0)     42,217.4595 (>1000.0)      817.2730 (>1000.0)       4;4      22.9981 (0.00)         24           1
test_benchmark_medium_linear                      43,621.0760 (>1000.0)     50,547.6360 (842.11)      45,595.4064 (>1000.0)    2,229.8243 (807.82)      44,416.0640 (>1000.0)    3,187.5440 (>1000.0)       4;0      21.9320 (0.00)         22           1
test_copy_benchmark[cplex]                        86,587.2080 (>1000.0)     93,981.6650 (>1000.0)     89,011.4081 (>1000.0)    2,596.7616 (940.76)      87,991.7495 (>1000.0)    4,237.7915 (>1000.0)       2;0      11.2345 (0.00)         12           1
test_copy_benchmark[glpk]                         87,706.0260 (>1000.0)     98,859.1460 (>1000.0)     90,716.7665 (>1000.0)    3,583.3687 (>1000.0)     88,890.6890 (>1000.0)    4,771.8175 (>1000.0)       2;0      11.0233 (0.00)         11           1
test_copy_benchmark[gurobi]                       89,864.0280 (>1000.0)     97,189.4820 (>1000.0)     92,364.1382 (>1000.0)    2,443.3751 (885.19)      91,981.3320 (>1000.0)    3,969.3273 (>1000.0)       4;0      10.8267 (0.00)         11           1
test_deepcopy_benchmark                          117,741.0300 (>1000.0)    129,801.5410 (>1000.0)    122,300.5477 (>1000.0)    3,650.9301 (>1000.0)    122,636.7820 (>1000.0)    4,741.2905 (>1000.0)       3;0       8.1766 (0.00)          9           1
test_add_metabolite_benchmark[gurobi]            473,503.7680 (>1000.0)    487,219.0690 (>1000.0)    479,422.0196 (>1000.0)    5,420.4971 (>1000.0)    480,549.7360 (>1000.0)    7,660.3365 (>1000.0)       2;0       2.0858 (0.00)          5           1
test_add_metabolite_benchmark[glpk]              474,917.2060 (>1000.0)    504,365.6180 (>1000.0)    483,362.8352 (>1000.0)   12,143.9398 (>1000.0)    479,176.7650 (>1000.0)   12,654.2402 (>1000.0)       1;0       2.0688 (0.00)          5           1
test_add_metabolite_benchmark[cplex]             476,836.8050 (>1000.0)    484,378.3620 (>1000.0)    480,675.6738 (>1000.0)    3,441.6755 (>1000.0)    479,020.4880 (>1000.0)    5,936.7183 (>1000.0)       3;0       2.0804 (0.00)          5           1
test_copy_benchmark_large_model[gurobi]        2,065,133.3600 (>1000.0)  3,221,185.8520 (>1000.0)  2,310,453.2098 (>1000.0)  509,264.8270 (>1000.0)  2,088,162.9290 (>1000.0)  303,829.4690 (>1000.0)       1;1       0.4328 (0.00)          5           1
test_copy_benchmark_large_model[cplex]         2,094,290.7750 (>1000.0)  3,052,013.7570 (>1000.0)  2,489,318.3588 (>1000.0)  470,857.6206 (>1000.0)  2,174,094.0720 (>1000.0)  824,144.0265 (>1000.0)       1;0       0.4017 (0.00)          5           1
test_copy_benchmark_large_model[glpk]          2,099,011.7510 (>1000.0)  2,773,060.1070 (>1000.0)  2,364,223.5176 (>1000.0)  328,635.4163 (>1000.0)  2,173,838.3850 (>1000.0)  589,021.4418 (>1000.0)       1;0       0.4230 (0.00)          5           1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Legend:
  Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
  OPS: Operations Per Second, computed as 1 / Mean
===== 266 passed, 19 skipped, 10 xfailed, 1263 warnings in 193.90 seconds ======
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra 
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/.benchmarks
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/reaction_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/metabolite_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/model_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/species.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/solution.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/dictlist.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/group.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/reaction.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/gene.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/object.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/configuration.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/singleton.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/metabolite.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/model.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/formula.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/sampling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/achr.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/optgp.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/validate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/delete.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/modify.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/exceptions.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/annotations.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_group.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_solution.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_model.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_core_reaction.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_configuration.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_metabolite.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_gene.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_dictlist.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_reaction_summary.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_model_summary.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_metabolite_summary.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_medium.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation_format.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_yaml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_mat.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_pickle.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation_format.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_notes.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_json.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_io_order.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_sbml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_notes.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/context.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/util.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/solver.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/array.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/json.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/sbml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/mat.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/dict.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/yaml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/configuration.py to configuration.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/singleton.py to singleton.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/formula.py to formula.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/model.py to model.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/summary.py to summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/metabolite_summary.py to metabolite_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/model_summary.py to model_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/reaction_summary.py to reaction_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/solution.py to solution.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py to dictlist.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/object.py to object.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/metabolite.py to metabolite.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/gene.py to gene.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/group.py to group.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/species.py to species.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/optgp.py to optgp.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/achr.py to achr.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/sampling.py to sampling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/exceptions.py to exceptions.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/delete.py to delete.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/validate.py to validate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/modify.py to modify.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/annotations.py to annotations.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_solution.py to test_solution.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_configuration.py to test_configuration.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_dictlist.py to test_dictlist.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_reaction_summary.py to test_reaction_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_model_summary.py to test_model_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_metabolite_summary.py to test_metabolite_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_group.py to test_group.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_core_reaction.py to test_core_reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_metabolite.py to test_metabolite.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_gene.py to test_gene.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_model.py to test_model.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_medium.py to test_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_mat.py to test_mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_pickle.py to test_pickle.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation_format.py to test_annotation_format.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py to test_sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation.py to test_annotation.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_json.py to test_json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_notes.py to test_notes.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_yaml.py to test_yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_io_order.py to test_io_order.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/context.py to context.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/solver.py to solver.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/array.py to array.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/util.py to util.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/mat.py to mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/sbml.py to sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/dict.py to dict.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/json.py to json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/yaml.py to yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/room.py to room.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-38.pyc
running install_egg_info
running egg_info
creating cobra.egg-info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py:213: SyntaxWarning: "is" with a literal. Did you mean "=="?
/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py:225: SyntaxWarning: "is" with a literal. Did you mean "=="?
warning: no files found matching 'cobra'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra-0.18.0.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installinit -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_lintian -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
INFO: pkgstriptranslations version 144
pkgstriptranslations: processing python3-cobra (in debian/python3-cobra); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/python3-cobra/DEBIAN/control, package python3-cobra, directory debian/python3-cobra
pkgstripfiles: Truncating usr/share/doc/python3-cobra/changelog.Debian.gz to topmost ten records
pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-cobra ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.18.0-3_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mLaunchpad Build Daemon <buildd@bos02-arm64-041.buildd> >../python-cobra_0.18.0-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20200512-1736

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-cobra_0.18.0-3_armhf.changes:
------------------------------------

Format: 1.8
Date: Tue, 12 May 2020 08:20:18 +0200
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.18.0-3
Distribution: groovy-proposed
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@bos02-arm64-041.buildd>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 python3-cobra - constraint-based modeling of biological networks with Python 3
Closes: 958538
Changes:
 python-cobra (0.18.0-3) unstable; urgency=medium
 .
   * Team upload
   * Use strong Depends instead of Recommends for several dependent modules
     Closes: #958538
Checksums-Sha1:
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 f3dea4b5dc6f1f71bfa7550c68763b6ca2044153 126748 python3-cobra_0.18.0-3_armhf.deb
Checksums-Sha256:
 1fea33fc4011486f665b37a573c0592330068cef6ec4de4d53eb6a5dbeb231ae 8450 python-cobra_0.18.0-3_armhf.buildinfo
 8b060af5201e11cbbdc9a8c8471c35e753a9ce7d33df6467483b10332458e7dd 126748 python3-cobra_0.18.0-3_armhf.deb
Files:
 cb5fb743f58c8cbf6b205f82e5662bbd 8450 python optional python-cobra_0.18.0-3_armhf.buildinfo
 cf5f04b601393939222ae2480886909c 126748 python optional python3-cobra_0.18.0-3_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-cobra_0.18.0-3_armhf.deb
--------------------------------

 new debian package, version 2.0.
 size 126748 bytes: control archive=3764 bytes.
    1163 bytes,    20 lines      control              
    8890 bytes,    95 lines      md5sums              
     251 bytes,    12 lines   *  postinst             #!/bin/sh
     400 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra
 Version: 0.18.0-3
 Architecture: armhf
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 707
 Depends: python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-pandas (>= 0.17.0), python3-ruamel.yaml, python3-sbml5, python3-six, python3-swiglpk, python3:any, python-cobra-data (= 0.18.0-3), python3-simplejson, python3-tabulate
 Suggests: python3-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: https://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks with Python 3
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.

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drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/
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-rw-r--r-- root/root         1 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra-0.18.0.egg-info/dependency_links.txt
-rw-r--r-- root/root        28 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra-0.18.0.egg-info/requires.txt
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drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root      1365 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/core/
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-rw-r--r-- root/root      9964 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/gene.py
-rw-r--r-- root/root      3622 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/group.py
-rw-r--r-- root/root     10589 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/metabolite.py
-rw-r--r-- root/root     50747 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/model.py
-rw-r--r-- root/root      1641 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/object.py
-rw-r--r-- root/root     43633 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/reaction.py
-rw-r--r-- root/root       528 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/singleton.py
-rw-r--r-- root/root      8450 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/solution.py
-rw-r--r-- root/root      1337 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/species.py
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-rw-r--r-- root/root      5375 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/summary/metabolite_summary.py
-rw-r--r-- root/root      7983 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/summary/model_summary.py
-rw-r--r-- root/root      2698 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/summary/reaction_summary.py
-rw-r--r-- root/root      7254 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/core/summary/summary.py
-rw-r--r-- root/root       777 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/exceptions.py
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root       781 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root     12947 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/deletion.py
-rw-r--r-- root/root      5899 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/fastcc.py
-rw-r--r-- root/root     13305 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root      4849 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/geometric.py
-rw-r--r-- root/root       576 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/helpers.py
-rw-r--r-- root/root      9591 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
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-rw-r--r-- root/root     10265 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root      8020 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root      5020 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/room.py
-rw-r--r-- root/root     14027 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/io/
-rw-r--r-- root/root       429 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/io/__init__.py
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-rw-r--r-- root/root      3303 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/io/yaml.py
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/manipulation/
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-rw-r--r-- root/root       872 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
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drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/medium/
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drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/sampling/
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-rw-r--r-- root/root     20325 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/sampling/hr_sampler.py
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drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/test/
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lrwxrwxrwx root/root         0 2020-05-12 06:20 ./usr/lib/python3/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
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-rw-r--r-- root/root     18395 2020-03-23 21:08 ./usr/lib/python3/dist-packages/cobra/util/solver.py
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drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/share/
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/share/doc/python3-cobra/
-rw-r--r-- root/root      2065 2020-03-23 21:08 ./usr/share/doc/python3-cobra/README.rst.gz
-rw-r--r-- root/root      1555 2020-05-12 06:20 ./usr/share/doc/python3-cobra/changelog.Debian.gz
-rw-r--r-- root/root      2071 2020-05-12 06:20 ./usr/share/doc/python3-cobra/copyright
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/share/lintian/
drwxr-xr-x root/root         0 2020-05-12 06:20 ./usr/share/lintian/overrides/
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 26628
Build-Time: 211
Distribution: groovy-proposed
Host Architecture: armhf
Install-Time: 94
Job: python-cobra_0.18.0-3.dsc
Machine Architecture: arm64
Package: python-cobra
Package-Time: 307
Source-Version: 0.18.0-3
Space: 26628
Status: successful
Version: 0.18.0-3
--------------------------------------------------------------------------------
Finished at 20200512-1736
Build needed 00:05:07, 26628k disc space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19294005
Scanning for processes to kill in build PACKAGEBUILD-19294005