https://launchpad.net/ubuntu/+source/python-cobra/0.18.1-1/+build/19785188 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-009 4.15.0-109-generic #110-Ubuntu SMP Tue Jun 23 02:40:18 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32. Syncing the system clock with the buildd NTP service... 8 Aug 17:11:49 ntpdate[1609]: adjust time server 10.211.37.1 offset 0.005687 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19785188 --image-type chroot /home/buildd/filecache-default/6f3c84eb9e6a781060c5439a51cfc1d7c8c4fc5d Creating target for build PACKAGEBUILD-19785188 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19785188 Starting target for build PACKAGEBUILD-19785188 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19785188 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19785188 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19785188 Updating target for build PACKAGEBUILD-19785188 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [937 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [8515 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5252 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf Packages [139 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [68.2 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf Packages [454 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [306 kB] Fetched 16.7 MB in 6s (2644 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libjson-c4 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libjson-c5 The following packages will be upgraded: apt base-files bsdutils build-essential ca-certificates coreutils dpkg dpkg-dev libapt-pkg6.0 libaudit-common libaudit1 libblkid1 libcap2 libcryptsetup12 libdpkg-perl libgmp10 liblzma5 libmount1 libmpc3 libmpfr6 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsystemd0 libudev1 libuuid1 libzstd1 linux-libc-dev mount systemd systemd-sysv systemd-timesyncd util-linux xz-utils 35 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 1753 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu10 [59.9 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf bsdutils armhf 1:2.36-2ubuntu1 [78.7 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf libselinux1 armhf 3.1-2 [60.4 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf coreutils armhf 8.32-3ubuntu1 [1207 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dpkg armhf 1.20.5ubuntu1 [1127 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf util-linux armhf 2.36-2ubuntu1 [1003 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main armhf liblzma5 armhf 5.2.4-1ubuntu1 [83.6 kB] Get:8 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd-sysv armhf 246-2ubuntu1 [10.3 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd-timesyncd armhf 246-2ubuntu1 [27.8 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libaudit-common all 1:2.8.5-3ubuntu1 [4076 B] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libaudit1 armhf 1:2.8.5-3ubuntu1 [36.0 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcap2 armhf 1:2.42-2 [15.3 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libjson-c5 armhf 0.15-1 [27.2 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libblkid1 armhf 2.36-2ubuntu1 [119 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libuuid1 armhf 2.36-2ubuntu1 [20.5 kB] Get:16 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcryptsetup12 armhf 2:2.3.3-1ubuntu4 [172 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libmount1 armhf 2.36-2ubuntu1 [133 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf mount armhf 2.36-2ubuntu1 [113 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd armhf 246-2ubuntu1 [3964 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsystemd0 armhf 246-2ubuntu1 [248 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libudev1 armhf 246-2ubuntu1 [60.0 kB] Get:22 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libzstd1 armhf 1.4.5+dfsg-4 [254 kB] Get:23 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libapt-pkg6.0 armhf 2.1.7ubuntu1 [773 kB] Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf apt armhf 2.1.7ubuntu1 [1253 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf libsemanage-common all 3.1-1 [10.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf libsemanage1 armhf 3.1-1 [75.0 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsmartcols1 armhf 2.36-2ubuntu1 [84.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgmp10 armhf 2:6.2.0+dfsg-6ubuntu1 [188 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main armhf ca-certificates all 20200601 [147 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main armhf xz-utils armhf 5.2.4-1ubuntu1 [80.9 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dpkg-dev all 1.20.5ubuntu1 [758 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libdpkg-perl all 1.20.5ubuntu1 [231 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf build-essential armhf 12.8ubuntu3 [4636 B] Get:34 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libmpfr6 armhf 4.1.0-3 [199 kB] Get:35 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf linux-libc-dev armhf 5.8.0-12.13 [1087 kB] Get:36 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libmpc3 armhf 1.2.0~rc1-1 [36.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 1s (21.9 MB/s) (Reading database ... 12533 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19785188 armhf groovy-proposed -c chroot:build-PACKAGEBUILD-19785188 --arch=armhf --dist=groovy-proposed --nolog python-cobra_0.18.1-1.dsc Initiating build PACKAGEBUILD-19785188 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-109-generic #110-Ubuntu SMP Tue Jun 23 02:40:18 UTC 2020 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-009.buildd +==============================================================================+ | python-cobra 0.18.1-1 (armhf) Sat, 08 Aug 2020 17:12:32 +0000 | +==============================================================================+ Package: python-cobra Version: 0.18.1-1 Source Version: 0.18.1-1 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19785188/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-cobra_0.18.1-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-cobra-YztmQA/python-cobra-0.18.1' with '<>' I: NOTICE: Log filtering will replace 'build/python-cobra-YztmQA' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-nMDJyf/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-nMDJyf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nMDJyf/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-nMDJyf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nMDJyf/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-nMDJyf/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (40.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libjson-c4 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-nMDJyf/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (64.0 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12651 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<>/resolver-nMDJyf/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-nMDJyf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nMDJyf/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-nMDJyf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nMDJyf/apt_archive ./ Sources [677 B] Get:5 copy:/<>/resolver-nMDJyf/apt_archive ./ Packages [750 B] Fetched 2390 B in 0s (62.2 kB/s) Reading package lists... Reading package lists... Install python-cobra build dependencies (apt-based resolver) ------------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libjson-c4 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libklu1 liblapack-dev liblapack3 liblcms2-2 libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librbio2 libsbml5 libsigsegv2 libsliplu1 libspqr2 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5 libtiff5 libtool libuchardet0 libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 man-db mime-support node-jquery po-debconf python-matplotlib-data python-pip-whl python3 python3-all python3-all-dev python3-atomicwrites python3-attr python3-certifi python3-chardet python3-cpuinfo python3-cycler python3-dateutil python3-depinfo python3-dev python3-distutils python3-future python3-idna python3-importlib-metadata python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pipdeptree python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-setuptools python3-simplejson python3-six python3-swiglpk python3-sympy python3-tabulate python3-tz python3-urllib3 python3-wcwidth python3-wheel python3-zipp python3.8 python3.8-dev python3.8-minimal swig swig4.0 ttf-bitstream-vera zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev libjs-jquery-ui-docs liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc python-cycler-doc python-future-doc python-jsonschema-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-scipy python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-numpy-dbg python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg subversion python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc python3.8-venv python3.8-doc binfmt-support swig-doc swig-examples swig4.0-examples swig4.0-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python3-tk python3-scipy python3-numexpr python3-tables python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-olefile python3-elasticsearch python3-freezegun python3-pygal The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libklu1 liblapack-dev liblapack3 liblcms2-2 libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librbio2 libsbml5 libsigsegv2 libsliplu1 libspqr2 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5 libtiff5 libtool libuchardet0 libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 man-db mime-support node-jquery po-debconf python-matplotlib-data python-pip-whl python3 python3-all python3-all-dev python3-atomicwrites python3-attr python3-certifi python3-chardet python3-cpuinfo python3-cycler python3-dateutil python3-depinfo python3-dev python3-distutils python3-future python3-idna python3-importlib-metadata python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pipdeptree python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-setuptools python3-simplejson python3-six python3-swiglpk python3-sympy python3-tabulate python3-tz python3-urllib3 python3-wcwidth python3-wheel python3-zipp python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-python-cobra-dummy swig swig4.0 ttf-bitstream-vera zlib1g-dev 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 75.9 MB of archives. After this operation, 408 MB of additional disk space will be used. 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groovy/universe armhf python3-depinfo armhf 1.5.3-1 [5572 B] Get:122 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf python3-future all 0.18.2-4 [336 kB] Get:123 http://ftpmaster.internal/ubuntu groovy/main armhf python3-idna all 2.10-1 [35.2 kB] Get:124 http://ftpmaster.internal/ubuntu groovy/main armhf python3-more-itertools all 4.2.0-3 [39.8 kB] Get:125 http://ftpmaster.internal/ubuntu groovy/main armhf python3-zipp all 1.0.0-3 [5440 B] Get:126 http://ftpmaster.internal/ubuntu groovy/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:127 http://ftpmaster.internal/ubuntu groovy/main armhf python3-pyrsistent armhf 0.15.5-1build1 [49.5 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/main armhf python3-jsonschema all 3.2.0-0ubuntu2 [43.1 kB] Get:129 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-kiwisolver armhf 1.0.1-3build1 [54.6 kB] Get:130 http://ftpmaster.internal/ubuntu groovy/main armhf python3-pyparsing all 2.4.7-1 [61.4 kB] Get:131 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0.25.3+dfsg2-3 [4095 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pandas all 0.25.3+dfsg2-3 [1967 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pluggy all 0.13.0-5 [18.6 kB] Get:143 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-py all 1.8.1-4 [65.2 kB] Get:144 http://ftpmaster.internal/ubuntu groovy/main armhf python3-wcwidth all 0.1.9+dfsg1-2 [17.7 kB] Get:145 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pytest all 4.6.11-1 [178 kB] Get:146 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pytest-benchmark all 3.2.2-2 [41.7 kB] Get:147 http://ftpmaster.internal/ubuntu groovy/main armhf python3-urllib3 all 1.25.9-1 [88.8 kB] Get:148 http://ftpmaster.internal/ubuntu groovy/main armhf python3-requests all 2.23.0+dfsg-2 [50.9 kB] Get:149 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-ruamel.yaml.clib armhf 0.2.0-3 [123 kB] Get:150 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-ruamel.yaml all 0.16.10-2 [94.8 kB] Get:151 http://ftpmaster.internal/ubuntu groovy/universe armhf swig4.0 armhf 4.0.1-5build1 [1030 kB] Get:152 http://ftpmaster.internal/ubuntu groovy/universe armhf swig all 4.0.1-5build1 [5528 B] Get:153 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-sbml5 armhf 5.18.0+dfsg-2 [2863 kB] Get:154 http://ftpmaster.internal/ubuntu groovy/main armhf python3-simplejson armhf 3.17.0-1 [48.5 kB] Get:155 http://ftpmaster.internal/ubuntu groovy/main armhf python3-tabulate all 0.8.6-0ubuntu2 [31.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 75.9 MB in 7s (11.6 MB/s) Selecting previously unselected package libpython3.8-minimal:armhf. (Reading database ... 12651 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.5-2_armhf.deb ... Unpacking libpython3.8-minimal:armhf (3.8.5-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.9-1build1_armhf.deb ... Unpacking libexpat1:armhf (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.5-2_armhf.deb ... Unpacking python3.8-minimal (3.8.5-2) ... Setting up libpython3.8-minimal:armhf (3.8.5-2) ... Setting up libexpat1:armhf (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 12942 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.8.2-0ubuntu2_armhf.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package mime-support. 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Unpacking sbuild-build-depends-python-cobra-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up liblcms2-2:armhf (2.9-4) ... Setting up libgraphblas3:armhf (1:5.8.1+dfsg-1) ... Setting up libxau6:armhf (1:1.0.9-0ubuntu1) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.64ubuntu1) ... Setting up bsdextrautils (2.36-2ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-3ubuntu1) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.64.4-1) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.5.2-1) ... Setting up libdebhelper-perl (13.2ubuntu1) ... Setting up libbrotli1:armhf (1.0.7-7) ... Setting up libldl2:armhf (1:5.8.1+dfsg-1) ... Setting up libmagic1:armhf (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up libmetis5:armhf (5.1.0.dfsg-7) ... Setting up file (1:5.38-5) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up libbtf1:armhf (1:5.8.1+dfsg-1) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libgmpxx4ldbl:armhf (2:6.2.0+dfsg-6ubuntu1) ... Setting up libexpat1-dev:armhf (2.2.9-1build1) ... Setting up libfreetype6:armhf (2.10.2+dfsg-3) ... Setting up libsigsegv2:armhf (2.12-2build1) ... Setting up libimagequant0:armhf (2.12.2-1.1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up libjpeg-turbo8:armhf (2.0.3-0ubuntu2) ... Setting up libltdl7:armhf (2.4.6-14) ... Setting up libgfortran5:armhf (10.2.0-3ubuntu1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up python-pip-whl (20.1.1-2) ... Setting up libcxsparse3:armhf (1:5.8.1+dfsg-1) ... Setting up swig4.0 (4.0.1-5build1) ... Setting up libpython3.8-stdlib:armhf (3.8.5-2) ... Setting up python3.8 (3.8.5-2) ... Setting up python-matplotlib-data (3.3.0-3) ... Setting up libwebpmux3:armhf (0.6.1-2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.180-1) ... Setting up libxml2:armhf (2.9.10+dfsg-5build1) ... Setting up libsuitesparseconfig5:armhf (1:5.8.1+dfsg-1) ... Setting up libblas-dev:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up node-jquery (3.5.1+dfsg-4) ... Setting up librbio2:armhf (1:5.8.1+dfsg-1) ... Setting up libpython3-stdlib:armhf (3.8.2-0ubuntu2) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libamd2:armhf (1:5.8.1+dfsg-1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-2) ... Setting up swig (4.0.1-5build1) ... Setting up libgmp-dev:armhf (2:6.2.0+dfsg-6ubuntu1) ... Setting up libcolamd2:armhf (1:5.8.1+dfsg-1) ... Setting up libtool (2.4.6-14) ... Setting up libwebpdemux2:armhf (0.6.1-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-tz (2020.1-2) ... Setting up python3-atomicwrites (1.4.0-1) ... Setting up libsliplu1:armhf (1:5.8.1+dfsg-1) ... Setting up python3-six (1.15.0-1) ... Setting up python3-simplejson (3.17.0-1) ... Setting up libcamd2:armhf (1:5.8.1+dfsg-1) ... Setting up libmongoose2:armhf (1:5.8.1+dfsg-1) ... Setting up python3-wcwidth (0.1.9+dfsg1-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.4.5.1-1) ... Setting up libglpk40:armhf (4.65-2) ... Setting up libsbml5 (5.18.0+dfsg-2) ... Setting up libpython3.8:armhf (3.8.5-2) ... Setting up python3-cycler (0.10.0-3) ... Setting up liblapack-dev:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-1ubuntu1) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up python3-cpuinfo (5.0.0-2) ... Setting up autoconf (2.69-11.1) ... Setting up python3-urllib3 (1.25.9-1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up python3-pyrsistent:armhf (0.15.5-1build1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libklu1:armhf (1:5.8.1+dfsg-1) ... Setting up libccolamd2:armhf (1:5.8.1+dfsg-1) ... Setting up python3-dateutil (2.8.1-4) ... Setting up libtiff5:armhf (4.1.0+git191117-2build1) ... Setting up libjs-jquery (3.5.1+dfsg-4) ... Setting up python3-mpmath (1.1.0-2) ... /usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:892: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: /usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:986: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: Setting up python3-lib2to3 (3.8.5-1) ... Setting up python3-swiglpk (4.65.0-2build1) ... Setting up libcholmod3:armhf (1:5.8.1+dfsg-1) ... Setting up python3-pkg-resources (46.1.3-1) ... Setting up automake (1:1.16.2-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.5-1) ... Setting up dh-python (4.20200804ubuntu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-sympy (1.6.1-1) ... Setting up python3-attr (19.3.0-5) ... Setting up libspqr2:armhf (1:5.8.1+dfsg-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up python3-setuptools (46.1.3-1) ... Setting up python3-py (1.8.1-4) ... Setting up python3-ruamel.yaml.clib (0.2.0-3) ... Setting up python3-tabulate (0.8.6-0ubuntu2) ... Setting up python3-all (3.8.2-0ubuntu2) ... Setting up python3-zipp (1.0.0-3) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-sbml5 (5.18.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-pil:armhf (7.2.0-1) ... Setting up python3-packaging (20.4-1) ... Setting up python3-chardet (3.0.4-7) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libumfpack5:armhf (1:5.8.1+dfsg-1) ... Setting up libpython3.8-dev:armhf (3.8.5-2) ... Setting up python3-requests (2.23.0+dfsg-2) ... Setting up python3-kiwisolver (1.0.1-3build1) ... Setting up python3-pip (20.1.1-2) ... Setting up python3-numpy (1:1.18.4-1ubuntu1) ... Setting up python3.8-dev (3.8.5-2) ... Setting up python3-ruamel.yaml (0.16.10-2) ... Setting up python3-future (0.18.2-4) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-pipdeptree (0.13.2-1build1) ... Setting up python3-optlang (1.4.4-2) ... /usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": /usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": /usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": Setting up python3-matplotlib (3.3.0-3) ... Setting up libpython3-dev:armhf (3.8.2-0ubuntu2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up libsuitesparse-dev:armhf (1:5.8.1+dfsg-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-pandas-lib (0.25.3+dfsg2-3) ... Setting up python3-pandas (0.25.3+dfsg2-3) ... Setting up python3-jsonschema (3.2.0-0ubuntu2) ... Setting up libpython3-all-dev:armhf (3.8.2-0ubuntu2) ... Setting up libglpk-dev:armhf (4.65-2) ... Setting up python3-dev (3.8.2-0ubuntu2) ... Setting up python3-depinfo (1.5.3-1) ... Setting up python3-pluggy (0.13.0-5) ... Setting up python3-all-dev (3.8.2-0ubuntu2) ... Setting up python3-pytest (4.6.11-1) ... Setting up python3-pytest-benchmark (3.2.2-2) ... Setting up debhelper (13.2ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-109-generic arm64 (armv7l) Toolchain package versions: binutils_2.35-1ubuntu1 dpkg-dev_1.20.5ubuntu1 g++-10_10.2.0-3ubuntu1 gcc-10_10.2.0-3ubuntu1 libc6-dev_2.31-0ubuntu10 libstdc++-10-dev_10.2.0-3ubuntu1 libstdc++6_10.2.0-3ubuntu1 linux-libc-dev_5.8.0-12.13 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.7ubuntu1 autoconf_2.69-11.1 automake_1:1.16.2-3ubuntu2 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu10 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.35-1ubuntu1 binutils-arm-linux-gnueabihf_2.35-1ubuntu1 binutils-common_2.35-1ubuntu1 bsdextrautils_2.36-2ubuntu1 bsdutils_1:2.36-2ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 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mime-support_3.64ubuntu1 mount_2.36-2ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 node-jquery_3.5.1+dfsg-4 openssl_1.1.1f-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu1 python-matplotlib-data_3.3.0-3 python-pip-whl_20.1.1-2 python3_3.8.2-0ubuntu2 python3-all_3.8.2-0ubuntu2 python3-all-dev_3.8.2-0ubuntu2 python3-atomicwrites_1.4.0-1 python3-attr_19.3.0-5 python3-certifi_2020.4.5.1-1 python3-chardet_3.0.4-7 python3-cpuinfo_5.0.0-2 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-4 python3-depinfo_1.5.3-1 python3-dev_3.8.2-0ubuntu2 python3-distutils_3.8.5-1 python3-future_0.18.2-4 python3-idna_2.10-1 python3-importlib-metadata_1.6.0-2 python3-jsonschema_3.2.0-0ubuntu2 python3-kiwisolver_1.0.1-3build1 python3-lib2to3_3.8.5-1 python3-matplotlib_3.3.0-3 python3-minimal_3.8.2-0ubuntu2 python3-more-itertools_4.2.0-3 python3-mpmath_1.1.0-2 python3-numpy_1:1.18.4-1ubuntu1 python3-optlang_1.4.4-2 python3-packaging_20.4-1 python3-pandas_0.25.3+dfsg2-3 python3-pandas-lib_0.25.3+dfsg2-3 python3-pil_7.2.0-1 python3-pip_20.1.1-2 python3-pipdeptree_0.13.2-1build1 python3-pkg-resources_46.1.3-1 python3-pluggy_0.13.0-5 python3-py_1.8.1-4 python3-pyparsing_2.4.7-1 python3-pyrsistent_0.15.5-1build1 python3-pytest_4.6.11-1 python3-pytest-benchmark_3.2.2-2 python3-requests_2.23.0+dfsg-2 python3-ruamel.yaml_0.16.10-2 python3-ruamel.yaml.clib_0.2.0-3 python3-sbml5_5.18.0+dfsg-2 python3-setuptools_46.1.3-1 python3-simplejson_3.17.0-1 python3-six_1.15.0-1 python3-swiglpk_4.65.0-2build1 python3-sympy_1.6.1-1 python3-tabulate_0.8.6-0ubuntu2 python3-tz_2020.1-2 python3-urllib3_1.25.9-1 python3-wcwidth_0.1.9+dfsg1-2 python3-wheel_0.34.2-1 python3-zipp_1.0.0-3 python3.8_3.8.5-2 python3.8-dev_3.8.5-2 python3.8-minimal_3.8.5-2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.7-1build1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5build1 swig4.0_4.0.1-5build1 systemd_246-2ubuntu1 systemd-sysv_246-2ubuntu1 systemd-timesyncd_246-2ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 ttf-bitstream-vera_1.10-8 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-2ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Aug 8 10:32:28 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-cobra_0.18.1-1.dsc dpkg-source: info: extracting python-cobra in /<> dpkg-source: info: unpacking python-cobra_0.18.1.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.18.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19785188 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19785188 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19785188 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.18.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.8_cobra/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra copying cobra/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra copying cobra/exceptions.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling copying cobra/sampling/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling copying cobra/sampling/achr.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling copying cobra/sampling/optgp.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling copying cobra/sampling/sampling.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling copying cobra/sampling/hr_sampler.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/reaction.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/singleton.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/species.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/formula.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/gene.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/group.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/configuration.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/model.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/solution.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/metabolite.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/object.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core copying cobra/core/dictlist.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test copying cobra/test/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test copying cobra/test/test_medium.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test copying cobra/test/test_manipulation.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test copying cobra/test/conftest.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io copying cobra/io/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io copying cobra/io/dict.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io copying cobra/io/json.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io copying cobra/io/yaml.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io copying cobra/io/sbml.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io copying cobra/io/mat.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation copying cobra/manipulation/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation copying cobra/manipulation/validate.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation copying cobra/manipulation/delete.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation copying cobra/manipulation/modify.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation copying cobra/manipulation/annotate.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util copying cobra/util/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util copying cobra/util/array.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util copying cobra/util/util.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util copying cobra/util/solver.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util copying cobra/util/context.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium copying cobra/medium/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium copying cobra/medium/annotations.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium copying cobra/medium/boundary_types.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium copying cobra/medium/minimal_medium.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/reaction.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/parsimonious.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/variability.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/room.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/deletion.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/fastcc.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/loopless.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/moma.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/gapfilling.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/helpers.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/geometric.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/phenotype_phase_plane.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary copying cobra/core/summary/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary copying cobra/core/summary/reaction_summary.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary copying cobra/core/summary/metabolite_summary.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary copying cobra/core/summary/model_summary.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary copying cobra/core/summary/summary.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_group.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_core_reaction.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_metabolite.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_solution.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_configuration.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_dictlist.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/conftest.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_model.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core copying cobra/test/test_core/test_gene.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_annotation.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_json.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_mat.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_io_order.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_notes.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_yaml.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_pickle.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_annotation_format.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_sbml.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io copying cobra/test/test_io/conftest.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary copying cobra/test/test_core/test_summary/__init__.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary copying cobra/test/test_core/test_summary/test_model_summary.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary copying cobra/test/test_core/test_summary/test_reaction_summary.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary copying cobra/test/test_core/test_summary/test_metabolite_summary.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary creating /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/salmonella.genes -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc2.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/salmonella.media -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/invalid0.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/fbc_ex2.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/invalid2.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini.yml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc2.xml.bz2 -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/annotation.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/validation.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini_cobra.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/iJO1366.xml.gz -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc1.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/textbook_fva.json -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini.pickle -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/textbook.xml.gz -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/iJO1366.pickle -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/salmonella.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/invalid_annotation_format.json -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini.json -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/textbook_pfba_fva.json -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/fbc_ex1.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/valid_annotation_format.json -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/example_notes.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/update_pickles.py -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/e_coli_core.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/invalid1.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc2.xml.gz -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/textbook_solution.pickle -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/mini.mat -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/raven.pickle -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/salmonella.pickle -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/raven.mat -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data copying cobra/test/data/valid_annotation_output.xml -> /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:217: cd /<>/.pybuild/cpython3_3.8_cobra/build; python3.8 -m pytest ============================= test session starts ============================== platform linux -- Python 3.8.5, pytest-4.6.11, py-1.8.1, pluggy-0.13.0 benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /<>, inifile: setup.cfg plugins: benchmark-3.2.2 collected 295 items cobra/test/test_manipulation.py ........... [ 3%] cobra/test/test_medium.py ................. [ 9%] cobra/test/test_core/test_configuration.py ...... [ 11%] cobra/test/test_core/test_core_reaction.py ......ss..................... [ 21%] ...................x.... [ 29%] cobra/test/test_core/test_dictlist.py ...................... [ 36%] cobra/test/test_core/test_gene.py . [ 37%] cobra/test/test_core/test_group.py .. [ 37%] cobra/test/test_core/test_metabolite.py ...ss.ss. [ 41%] cobra/test/test_core/test_model.py ..................................... [ 53%] ............................s..s.ss. [ 65%] cobra/test/test_core/test_solution.py .ss [ 66%] cobra/test/test_core/test_summary/test_metabolite_summary.py ........ [ 69%] cobra/test/test_core/test_summary/test_model_summary.py .......... [ 72%] cobra/test/test_core/test_summary/test_reaction_summary.py ss.. [ 74%] cobra/test/test_io/test_annotation.py .. [ 74%] cobra/test/test_io/test_annotation_format.py .. [ 75%] cobra/test/test_io/test_io_order.py ........................... [ 84%] cobra/test/test_io/test_json.py x.x [ 85%] cobra/test/test_io/test_mat.py ss [ 86%] cobra/test/test_io/test_notes.py . [ 86%] cobra/test/test_io/test_pickle.py .s.s [ 88%] cobra/test/test_io/test_sbml.py ............xxxx.x.x..s.......... [ 99%] cobra/test/test_io/test_yaml.py .x [100%] =============================== warnings summary =============================== /usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 /usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working cobra/core/dictlist.py:213 cobra/core/dictlist.py:213 SyntaxWarning: "is" with a literal. Did you mean "=="? cobra/core/gene.py:249 cobra/core/gene.py:249 DeprecationWarning: invalid escape sequence \( cobra/core/gene.py:268 cobra/core/gene.py:268 DeprecationWarning: invalid escape sequence \( cobra/core/reaction.py:40 cobra/core/reaction.py:40 DeprecationWarning: invalid escape sequence \s cobra/flux_analysis/gapfilling.py:13 cobra/flux_analysis/gapfilling.py:13 DeprecationWarning: invalid escape sequence \s .pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_escape_ids /usr/lib/python3/dist-packages/optlang/interface.py:1358 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working .pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation .pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation .pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type .pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand .pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_gene_knock_out .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_make_lhs_irreversible_reversible .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk] 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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_context .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_from_other_model .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_cobra_reaction cobra/core/model.py:524 DeprecationWarning: add_reaction deprecated. Use add_reactions instead .pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium cobra/core/model.py:287 DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_1 .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3 cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -9. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3 .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4 cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of 2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3 cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -10. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3 cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -11. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4 cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_2 .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_make_irreversible_irreversible_to_the_other_side .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PFK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_knockout cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of 8.39. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACALDt' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACKr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACONTa' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACONTb' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ACt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ADK1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'AKGDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'AKGt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ALCD2x' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ATPS4r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'CO2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'CS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'CYTBD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'D_LACt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ENO' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ETOHt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_ac_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_acald_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_akg_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_co2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_for_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_fru_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_fum_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_h_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_o2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_pi_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'EX_succ_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FBA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FBP' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FORt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FORti' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FRD7' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FRUpts2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FUM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'FUMt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'G6PDH2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GAPD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLCpts' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLNS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLNabc' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUDy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUN' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUSy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GLUt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'GND' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'H2Ot' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ICDHyr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ICL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'LDH_D' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'MALS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'MALt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'MDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ME1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'ME2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'NADH16' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'NADTRHD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'NH4t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'O2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PFK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PFL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PGM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PIt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PPC' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PPCK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PPS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PTAr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PYK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'PYRt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'RPE' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'RPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCCt3' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCDi' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'SUCOAS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TALA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'THD2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TKT1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TKT2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb cobra/core/reaction.py:241 DeprecationWarning: You are constraining the reaction 'TPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACALDt' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACKr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACONTa' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACONTb' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ACt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ADK1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'AKGDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'AKGt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ALCD2x' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of -91.61. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ATPS4r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'CO2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'CS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'CYTBD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'D_LACt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ENO' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ETOHt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_ac_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_acald_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_akg_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_co2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_for_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_fru_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_fum_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of -110.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_h_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_o2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_pi_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'EX_succ_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FBA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FBP' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FORt2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FORti' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FRD7' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FRUpts2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FUM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'FUMt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'G6PDH2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GAPD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLCpts' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLNS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLNabc' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUDy' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUN' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUSy' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GLUt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'GND' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'H2Ot' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ICDHyr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ICL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'LDH_D' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'MALS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'MALt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'MDH' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ME1' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'ME2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'NADH16' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'NADTRHD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'NH4t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'O2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PFL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGK' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PGM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PIt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PPC' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PPCK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PPS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PTAr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PYK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'PYRt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'RPE' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'RPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCCt3' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCDi' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'SUCOAS' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TALA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'THD2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TKT1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TKT2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub cobra/core/reaction.py:271 DeprecationWarning: You are constraining the reaction 'TPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete cobra/core/reaction.py:598 DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements cobra/core/group.py:110 UserWarning: need to pass in a list .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements cobra/core/gene.py:237 UserWarning: Use cobra.manipulation.remove_genes instead .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models cobra/core/model.py:307 DeprecationWarning: use model.merge instead .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models cobra/core/model.py:317 DeprecationWarning: use model.merge instead .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table_previous_solution[optlang-glpk-q8_c] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table[optlang-glpk-q8_c-False] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table[optlang-glpk-q8_c-True] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table_with_fva[optlang-glpk-0.99-fdp_c] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_previous_solution[optlang-glpk-False] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_previous_solution[optlang-glpk-True] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table[optlang-glpk-False] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table[optlang-glpk-True] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_with_fva[optlang-glpk-0.95] cobra/core/summary/summary.py:206 UserWarning: Setting float_format to anything other than None will cause nan to be present in the output. .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py::test_load_json_model .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py::test_read_pickle[load_function0] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Gz] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Gz] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Bz2] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Bz2] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[cobra] .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_filehandle .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_from_sbml_string .pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py::test_load_yaml_model cobra/util/solver.py:416 UserWarning: solver status is 'infeasible' -- Docs: https://docs.pytest.org/en/latest/warnings.html Computing stats ... 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group 1/1: ops: rounds (14/21) Computing stats ... group 1/1: ops: rounds (15/21) Computing stats ... group 1/1: ops: rounds (16/21) Computing stats ... group 1/1: ops: rounds (17/21) Computing stats ... group 1/1: ops: rounds (18/21) Computing stats ... group 1/1: ops: rounds (19/21) Computing stats ... group 1/1: ops: rounds (20/21) Computing stats ... group 1/1: ops: rounds (21/21) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/21) Computing stats ... group 1/1: ops: iterations (2/21) Computing stats ... group 1/1: ops: iterations (3/21) Computing stats ... group 1/1: ops: iterations (4/21) Computing stats ... group 1/1: ops: iterations (5/21) Computing stats ... group 1/1: ops: iterations (6/21) Computing stats ... group 1/1: ops: iterations (7/21) Computing stats ... group 1/1: ops: iterations (8/21) Computing stats ... group 1/1: ops: iterations (9/21) Computing stats ... group 1/1: ops: iterations (10/21) Computing stats ... group 1/1: ops: iterations (11/21) Computing stats ... group 1/1: ops: iterations (12/21) Computing stats ... group 1/1: ops: iterations (13/21) Computing stats ... group 1/1: ops: iterations (14/21) Computing stats ... group 1/1: ops: iterations (15/21) Computing stats ... group 1/1: ops: iterations (16/21) Computing stats ... group 1/1: ops: iterations (17/21) Computing stats ... group 1/1: ops: iterations (18/21) Computing stats ... group 1/1: ops: iterations (19/21) Computing stats ... group 1/1: ops: iterations (20/21) Computing stats ... group 1/1: ops: iterations (21/21) ------------------------------------------------------------------------------------------------------------------ benchmark: 21 tests ------------------------------------------------------------------------------------------------------------------- Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[cplex] 22.9600 (1.0) 86.3590 (1.0) 25.2469 (1.0) 5.3661 (1.0) 23.7800 (1.01) 0.8800 (1.69) 61;176 39,608.8032 (1.0) 1009 1 test_subtract_metabolite_benchmark[gurobi] 23.0600 (1.00) 228.8770 (2.65) 25.2951 (1.00) 8.7822 (1.64) 23.6600 (1.0) 0.5200 (1.0) 30;141 39,533.4046 (1.00) 953 1 test_subtract_metabolite_benchmark[glpk] 24.1600 (1.05) 122.6790 (1.42) 32.4828 (1.29) 7.9256 (1.48) 32.3595 (1.37) 8.0400 (15.46) 41;19 30,785.4829 (0.78) 890 1 test_change_objective_benchmark[cplex] 1,264.0270 (55.05) 1,655.7820 (19.17) 1,330.5799 (52.70) 50.4865 (9.41) 1,327.8070 (56.12) 60.6890 (116.71) 210;28 751.5520 (0.02) 951 1 test_change_objective_benchmark[glpk] 1,269.3270 (55.28) 1,595.1240 (18.47) 1,336.1408 (52.92) 48.1368 (8.97) 1,334.7770 (56.41) 65.2000 (125.38) 346;26 748.4241 (0.02) 1080 1 test_change_objective_benchmark[gurobi] 1,283.3860 (55.90) 1,679.5230 (19.45) 1,399.2592 (55.42) 68.2734 (12.72) 1,388.3250 (58.68) 95.8142 (184.26) 324;14 714.6638 (0.02) 977 1 test_add_remove_reaction_benchmark[glpk] 2,010.4170 (87.56) 408,047.7600 (>1000.0) 3,710.6975 (146.98) 23,426.4731 (>1000.0) 2,241.9035 (94.76) 374.5765 (720.34) 1;6 269.4911 (0.01) 300 1 test_add_remove_reaction_benchmark[cplex] 2,046.8160 (89.15) 3,494.3200 (40.46) 2,463.9153 (97.59) 247.4163 (46.11) 2,526.8300 (106.80) 448.8350 (863.14) 113;1 405.8581 (0.01) 287 1 test_add_remove_reaction_benchmark[gurobi] 2,066.9350 (90.02) 3,493.0190 (40.45) 2,381.5992 (94.33) 220.2076 (41.04) 2,317.0730 (97.93) 359.9960 (692.30) 82;1 419.8859 (0.01) 256 1 test_benchmark_medium_mip 42,974.3390 (>1000.0) 53,852.6460 (623.59) 47,611.0129 (>1000.0) 3,505.7768 (653.32) 47,231.3260 (>1000.0) 5,666.5100 (>1000.0) 9;0 21.0035 (0.00) 22 1 test_benchmark_medium_linear 47,342.5040 (>1000.0) 57,073.6860 (660.89) 51,651.9735 (>1000.0) 3,431.1725 (639.41) 50,438.4070 (>1000.0) 6,383.0270 (>1000.0) 9;0 19.3603 (0.00) 21 1 test_copy_benchmark[gurobi] 97,799.0310 (>1000.0) 112,393.5440 (>1000.0) 103,737.7739 (>1000.0) 4,749.8336 (885.15) 103,367.2480 (>1000.0) 6,472.2450 (>1000.0) 3;0 9.6397 (0.00) 10 1 test_copy_benchmark[cplex] 99,033.9160 (>1000.0) 122,538.1640 (>1000.0) 108,169.5928 (>1000.0) 8,831.9861 (>1000.0) 104,154.8360 (>1000.0) 15,558.0695 (>1000.0) 3;0 9.2447 (0.00) 9 1 test_copy_benchmark[glpk] 100,527.9960 (>1000.0) 121,805.2700 (>1000.0) 110,029.9129 (>1000.0) 7,235.9845 (>1000.0) 110,028.9860 (>1000.0) 11,418.5475 (>1000.0) 3;0 9.0884 (0.00) 9 1 test_deepcopy_benchmark 133,939.4780 (>1000.0) 141,764.7150 (>1000.0) 136,688.6527 (>1000.0) 3,031.0762 (564.85) 135,651.7090 (>1000.0) 4,225.6465 (>1000.0) 2;0 7.3159 (0.00) 8 1 test_add_metabolite_benchmark[glpk] 490,265.4560 (>1000.0) 558,726.8410 (>1000.0) 529,207.1022 (>1000.0) 30,117.0679 (>1000.0) 546,371.2990 (>1000.0) 49,211.5460 (>1000.0) 1;0 1.8896 (0.00) 5 1 test_add_metabolite_benchmark[gurobi] 493,363.0020 (>1000.0) 566,712.4800 (>1000.0) 515,607.2886 (>1000.0) 30,245.5941 (>1000.0) 503,650.7700 (>1000.0) 35,662.1257 (>1000.0) 1;0 1.9395 (0.00) 5 1 test_add_metabolite_benchmark[cplex] 505,858.8910 (>1000.0) 530,942.6010 (>1000.0) 517,667.0274 (>1000.0) 9,787.8494 (>1000.0) 516,703.0770 (>1000.0) 14,918.9900 (>1000.0) 2;0 1.9317 (0.00) 5 1 test_copy_benchmark_large_model[glpk] 2,360,499.3850 (>1000.0) 3,053,286.2090 (>1000.0) 2,640,343.2322 (>1000.0) 351,899.3387 (>1000.0) 2,403,015.2520 (>1000.0) 629,085.3032 (>1000.0) 2;0 0.3787 (0.00) 5 1 test_copy_benchmark_large_model[gurobi] 2,370,918.7120 (>1000.0) 3,446,318.2500 (>1000.0) 2,602,335.4022 (>1000.0) 472,295.9588 (>1000.0) 2,384,199.9170 (>1000.0) 302,762.6780 (>1000.0) 1;1 0.3843 (0.00) 5 1 test_copy_benchmark_large_model[cplex] 2,415,720.0660 (>1000.0) 3,355,244.4670 (>1000.0) 2,652,983.6560 (>1000.0) 396,594.9056 (>1000.0) 2,471,215.9800 (>1000.0) 320,636.2660 (>1000.0) 1;1 0.3769 (0.00) 5 1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ===== 266 passed, 19 skipped, 10 xfailed, 1101 warnings in 222.04 seconds ====== create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-cobra running install running build running build_py running install_lib creating /<>/debian/python3-cobra creating /<>/debian/python3-cobra/usr creating /<>/debian/python3-cobra/usr/lib creating /<>/debian/python3-cobra/usr/lib/python3.8 creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/achr.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/optgp.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/sampling.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/hr_sampler.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/sampling.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/optgp.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/achr.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/singleton.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/species.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/formula.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/reaction_summary.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/metabolite_summary.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/model_summary.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/summary.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/summary.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/reaction_summary.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/metabolite_summary.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/model_summary.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/group.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/configuration.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/solution.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/metabolite.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/object.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/dictlist.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/gene.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/dictlist.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/reaction.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/singleton.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/object.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/formula.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/solution.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/group.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/species.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/configuration.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/metabolite.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/model.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_group.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_metabolite.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_solution.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_configuration.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_dictlist.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/conftest.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_reaction_summary.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_metabolite_summary.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_reaction_summary.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_model_summary.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_gene.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_configuration.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_core_reaction.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_dictlist.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_model.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_solution.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_gene.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_metabolite.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_group.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.genes -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.media -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid0.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex2.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid2.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.yml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/annotation.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/validation.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_cobra.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.xml.gz -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc1.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_fva.json -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.pickle -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook.xml.gz -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.pickle -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid_annotation_format.json -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.json -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex1.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_format.json -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/example_notes.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/update_pickles.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/e_coli_core.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid1.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_solution.pickle -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.mat -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.pickle -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.pickle -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.mat -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_output.xml -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/conftest.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_mat.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_io_order.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_notes.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation_format.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/conftest.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_mat.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_yaml.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_pickle.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_io_order.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_notes.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_json.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation_format.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_sbml.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_medium.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/dict.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/json.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/yaml.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/sbml.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/mat.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/dict.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/yaml.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/sbml.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/json.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/mat.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/exceptions.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/validate.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/delete.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/modify.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/annotate.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/modify.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/delete.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/validate.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/array.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/util.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/solver.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/context.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/array.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/util.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/context.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/solver.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/annotations.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/boundary_types.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/minimal_medium.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/annotations.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__init__.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/reaction.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/parsimonious.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/variability.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/room.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/deletion.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/fastcc.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/loopless.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/moma.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/gapfilling.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/helpers.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/geometric.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/exceptions.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__ copying /<>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__ creating /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/.benchmarks byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/achr.py to achr.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/optgp.py to optgp.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/sampling.py to sampling.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/reaction.py to reaction.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/singleton.py to singleton.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/species.py to species.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/formula.py to formula.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/gene.py to gene.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/reaction_summary.py to reaction_summary.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/metabolite_summary.py to metabolite_summary.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/model_summary.py to model_summary.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/summary.py to summary.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/group.py to group.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/configuration.py to configuration.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/model.py to model.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/solution.py to solution.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/metabolite.py to metabolite.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/object.py to object.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py to dictlist.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_medium.py to test_medium.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_group.py to test_group.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_core_reaction.py to test_core_reaction.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_metabolite.py to test_metabolite.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_solution.py to test_solution.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_configuration.py to test_configuration.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_dictlist.py to test_dictlist.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/conftest.py to conftest.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_model.py to test_model.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_model_summary.py to test_model_summary.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_reaction_summary.py to test_reaction_summary.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_metabolite_summary.py to test_metabolite_summary.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_gene.py to test_gene.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/conftest.py to conftest.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation.py to test_annotation.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_json.py to test_json.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_mat.py to test_mat.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_io_order.py to test_io_order.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_notes.py to test_notes.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_yaml.py to test_yaml.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_pickle.py to test_pickle.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation_format.py to test_annotation_format.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py to test_sbml.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/conftest.py to conftest.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/dict.py to dict.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/json.py to json.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/yaml.py to yaml.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/sbml.py to sbml.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/mat.py to mat.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/exceptions.py to exceptions.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/validate.py to validate.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/delete.py to delete.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/modify.py to modify.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/array.py to array.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/util.py to util.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/solver.py to solver.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/context.py to context.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/annotations.py to annotations.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/room.py to room.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-38.pyc byte-compiling /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-38.pyc running install_egg_info running egg_info creating cobra.egg-info writing cobra.egg-info/PKG-INFO writing dependency_links to cobra.egg-info/dependency_links.txt writing requirements to cobra.egg-info/requires.txt writing top-level names to cobra.egg-info/top_level.txt writing manifest file 'cobra.egg-info/SOURCES.txt' reading manifest file 'cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /usr/lib/python3.8/dist-packages/cobra/core/dictlist.py:213: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py:225: SyntaxWarning: "is" with a literal. Did you mean "=="? warning: no files found matching 'cobra' writing manifest file 'cobra.egg-info/SOURCES.txt' Copying cobra.egg-info to /<>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra-0.18.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install -X update_pickles.py --package=python-cobra-data dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 146 pkgstriptranslations: processing python3-cobra (in debian/python3-cobra); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-cobra/DEBIAN/control, package python3-cobra, directory debian/python3-cobra pkgstripfiles: Truncating usr/share/doc/python3-cobra/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-cobra ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.18.1-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../python-cobra_0.18.1-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-08-08T17:18:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-cobra_0.18.1-1_armhf.changes: ------------------------------------ Format: 1.8 Date: Sat, 08 Aug 2020 12:04:31 +0200 Source: python-cobra Binary: python3-cobra Architecture: armhf Version: 0.18.1-1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: python3-cobra - constraint-based modeling of biological networks with Python 3 Changes: python-cobra (0.18.1-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) Checksums-Sha1: d43808c19c903cf2ff58fb80210d2d0fa2ded353 8807 python-cobra_0.18.1-1_armhf.buildinfo 62db59fda1febe5576cb194618002635ac367149 126600 python3-cobra_0.18.1-1_armhf.deb Checksums-Sha256: 952fa01ccfc9dff2607792e0d607c9739db0baaeccbb0d2545f90c1f1fdb5b89 8807 python-cobra_0.18.1-1_armhf.buildinfo 2d6f78f5a6491db3125cf350497d090a91d09f86121397b82b3e7afcba2af8fa 126600 python3-cobra_0.18.1-1_armhf.deb Files: ceff1567f847d14dff565fcc73f682df 8807 python optional python-cobra_0.18.1-1_armhf.buildinfo 8890a81565dbbed55ffb0c3b2ccb173f 126600 python optional python3-cobra_0.18.1-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-cobra Binary: python3-cobra Architecture: armhf Version: 0.18.1-1 Checksums-Md5: 8890a81565dbbed55ffb0c3b2ccb173f 126600 python3-cobra_0.18.1-1_armhf.deb Checksums-Sha1: 62db59fda1febe5576cb194618002635ac367149 126600 python3-cobra_0.18.1-1_armhf.deb Checksums-Sha256: 2d6f78f5a6491db3125cf350497d090a91d09f86121397b82b3e7afcba2af8fa 126600 python3-cobra_0.18.1-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Sat, 08 Aug 2020 17:18:44 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-3ubuntu2), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu10), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu2), binutils (= 2.35-1ubuntu1), binutils-arm-linux-gnueabihf (= 2.35-1ubuntu1), binutils-common (= 2.35-1ubuntu1), bsdextrautils (= 2.36-2ubuntu1), bsdutils (= 1:2.36-2ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), ca-certificates (= 20200601), coreutils (= 8.32-3ubuntu1), cpp (= 4:10.1.0-1ubuntu1), cpp-10 (= 10.2.0-3ubuntu1), cython3 (= 0.29.21-1ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2ubuntu1), debianutils (= 4.11), dh-autoreconf (= 19), dh-python (= 4.20200804ubuntu1), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3build1), dpkg (= 1.20.5ubuntu1), dpkg-dev (= 1.20.5ubuntu1), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu1), fonts-lyx (= 2.3.5.2-1), g++ (= 4:10.1.0-1ubuntu1), g++-10 (= 10.2.0-3ubuntu1), gcc (= 4:10.1.0-1ubuntu1), gcc-10 (= 10.2.0-3ubuntu1), gcc-10-base (= 10.2.0-3ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libamd2 (= 1:5.8.1+dfsg-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-3ubuntu1), libatomic1 (= 10.2.0-3ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu1), libaudit1 (= 1:2.8.5-3ubuntu1), libbinutils (= 2.35-1ubuntu1), libblas-dev (= 3.9.0-3), libblas3 (= 3.9.0-3), libblkid1 (= 2.36-2ubuntu1), libbrotli1 (= 1.0.7-7), libbsd0 (= 0.10.0-1), libbtf1 (= 1:5.8.1+dfsg-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.31-0ubuntu10), libc-dev-bin (= 2.31-0ubuntu10), libc6 (= 2.31-0ubuntu10), libc6-dev (= 2.31-0ubuntu10), libcamd2 (= 1:5.8.1+dfsg-1), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-3ubuntu1), libccolamd2 (= 1:5.8.1+dfsg-1), libcholmod3 (= 1:5.8.1+dfsg-1), libcolamd2 (= 1:5.8.1+dfsg-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1ubuntu1), libcrypt1 (= 1:4.4.16-1ubuntu1), libctf-nobfd0 (= 2.35-1ubuntu1), libctf0 (= 2.35-1ubuntu1), libcxsparse3 (= 1:5.8.1+dfsg-1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.252ubuntu1), libdebhelper-perl (= 13.2ubuntu1), libdpkg-perl (= 1.20.5ubuntu1), libelf1 (= 0.180-1), libexpat1 (= 2.2.9-1build1), libexpat1-dev (= 2.2.9-1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libfreetype6 (= 2.10.2+dfsg-3), libgcc-10-dev (= 10.2.0-3ubuntu1), libgcc-s1 (= 10.2.0-3ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgfortran5 (= 10.2.0-3ubuntu1), libglib2.0-0 (= 2.64.4-1), libglpk-dev (= 4.65-2), libglpk40 (= 4.65-2), libgmp-dev (= 2:6.2.0+dfsg-6ubuntu1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgmpxx4ldbl (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 10.2.0-3ubuntu1), libgpg-error0 (= 1.38-2), libgraphblas3 (= 1:5.8.1+dfsg-1), libicu67 (= 67.1-3ubuntu1), libimagequant0 (= 2.12.2-1.1), libisl22 (= 0.22.1-1), libjbig0 (= 2.1-3.1build1), libjpeg-turbo8 (= 2.0.3-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg-4), libjs-jquery-ui (= 1.12.1+dfsg-5), libklu1 (= 1:5.8.1+dfsg-1), liblapack-dev (= 3.9.0-3), liblapack3 (= 3.9.0-3), liblcms2-2 (= 2.9-4), libldl2 (= 1:5.8.1+dfsg-1), libltdl7 (= 2.4.6-14), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmetis5 (= 5.1.0.dfsg-7), libmongoose2 (= 1:5.8.1+dfsg-1), libmount1 (= 2.36-2ubuntu1), libmpc3 (= 1.2.0~rc1-1), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2-1), libpam-modules (= 1.3.1-5ubuntu5), libpam-modules-bin (= 1.3.1-5ubuntu5), libpam-runtime (= 1.3.1-5ubuntu5), libpam0g (= 1.3.1-5ubuntu5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.2-2build1), libpng16-16 (= 1.6.37-2), libpython3-all-dev (= 3.8.2-0ubuntu2), libpython3-dev (= 3.8.2-0ubuntu2), libpython3-stdlib (= 3.8.2-0ubuntu2), libpython3.8 (= 3.8.5-2), libpython3.8-dev (= 3.8.5-2), libpython3.8-minimal (= 3.8.5-2), libpython3.8-stdlib (= 3.8.5-2), librbio2 (= 1:5.8.1+dfsg-1), libreadline8 (= 8.0-4), libsbml5 (= 5.18.0+dfsg-2), libseccomp2 (= 2.4.3-1ubuntu4), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2build1), libsliplu1 (= 1:5.8.1+dfsg-1), libsmartcols1 (= 2.36-2ubuntu1), libspqr2 (= 1:5.8.1+dfsg-1), libsqlite3-0 (= 3.32.3-1), libssl1.1 (= 1.1.1f-1ubuntu3), libstdc++-10-dev (= 10.2.0-3ubuntu1), libstdc++6 (= 10.2.0-3ubuntu1), libsub-override-perl (= 0.09-2), libsuitesparse-dev (= 1:5.8.1+dfsg-1), libsuitesparseconfig5 (= 1:5.8.1+dfsg-1), libsystemd0 (= 246-2ubuntu1), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-3ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246-2ubuntu1), libumfpack5 (= 1:5.8.1+dfsg-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-2ubuntu1), libwebp6 (= 0.6.1-2), libwebpdemux2 (= 0.6.1-2), libwebpmux3 (= 0.6.1-2), libxau6 (= 1:1.0.9-0ubuntu1), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxml2 (= 2.9.10+dfsg-5build1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-12.13), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), mime-support (= 3.64ubuntu1), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), node-jquery (= 3.5.1+dfsg-4), openssl (= 1.1.1f-1ubuntu3), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), python-matplotlib-data (= 3.3.0-3), python-pip-whl (= 20.1.1-2), python3 (= 3.8.2-0ubuntu2), python3-all (= 3.8.2-0ubuntu2), python3-all-dev (= 3.8.2-0ubuntu2), python3-atomicwrites (= 1.4.0-1), python3-attr (= 19.3.0-5), python3-certifi (= 2020.4.5.1-1), python3-chardet (= 3.0.4-7), python3-cpuinfo (= 5.0.0-2), python3-cycler (= 0.10.0-3), python3-dateutil (= 2.8.1-4), python3-depinfo (= 1.5.3-1), python3-dev (= 3.8.2-0ubuntu2), python3-distutils (= 3.8.5-1), python3-future (= 0.18.2-4), python3-idna (= 2.10-1), python3-importlib-metadata (= 1.6.0-2), python3-jsonschema (= 3.2.0-0ubuntu2), python3-kiwisolver (= 1.0.1-3build1), python3-lib2to3 (= 3.8.5-1), python3-matplotlib (= 3.3.0-3), python3-minimal (= 3.8.2-0ubuntu2), python3-more-itertools (= 4.2.0-3), python3-mpmath (= 1.1.0-2), python3-numpy (= 1:1.18.4-1ubuntu1), python3-optlang (= 1.4.4-2), python3-packaging (= 20.4-1), python3-pandas (= 0.25.3+dfsg2-3), python3-pandas-lib (= 0.25.3+dfsg2-3), python3-pil (= 7.2.0-1), python3-pip (= 20.1.1-2), python3-pipdeptree (= 0.13.2-1build1), python3-pkg-resources (= 46.1.3-1), python3-pluggy (= 0.13.0-5), python3-py (= 1.8.1-4), python3-pyparsing (= 2.4.7-1), python3-pyrsistent (= 0.15.5-1build1), python3-pytest (= 4.6.11-1), python3-pytest-benchmark (= 3.2.2-2), python3-requests (= 2.23.0+dfsg-2), python3-ruamel.yaml (= 0.16.10-2), python3-ruamel.yaml.clib (= 0.2.0-3), python3-sbml5 (= 5.18.0+dfsg-2), python3-setuptools (= 46.1.3-1), python3-simplejson (= 3.17.0-1), python3-six (= 1.15.0-1), python3-swiglpk (= 4.65.0-2build1), python3-sympy (= 1.6.1-1), python3-tabulate (= 0.8.6-0ubuntu2), python3-tz (= 2020.1-2), python3-urllib3 (= 1.25.9-1), python3-wcwidth (= 0.1.9+dfsg1-2), python3-wheel (= 0.34.2-1), python3-zipp (= 1.0.0-3), python3.8 (= 3.8.5-2), python3.8-dev (= 3.8.5-2), python3.8-minimal (= 3.8.5-2), readline-common (= 8.0-4), sed (= 4.7-1build1), sensible-utils (= 0.0.12+nmu1), swig (= 4.0.1-5build1), swig4.0 (= 4.0.1-5build1), sysvinit-utils (= 2.96-3ubuntu1), tar (= 1.30+dfsg-7), ttf-bitstream-vera (= 1.10-8), tzdata (= 2020a-0ubuntu1), util-linux (= 2.36-2ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1596881071" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-cobra_0.18.1-1_armhf.deb -------------------------------- new Debian package, version 2.0. size 126600 bytes: control archive=3764 bytes. 1163 bytes, 20 lines control 8890 bytes, 95 lines md5sums 251 bytes, 12 lines * postinst #!/bin/sh 400 bytes, 12 lines * prerm #!/bin/sh Package: python3-cobra Source: python-cobra Version: 0.18.1-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 707 Depends: python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-pandas (>= 0.17.0), python3-ruamel.yaml, python3-sbml5, python3-six, python3-swiglpk, python3:any, python-cobra-data (= 0.18.1-1), python3-simplejson, python3-tabulate Suggests: python3-matplotlib, qsopt-ex Section: python Priority: optional Homepage: https://opencobra.github.io/cobrapy/ Description: constraint-based modeling of biological networks with Python 3 COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accommodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux balance analysis, flux variability analysis, and gene deletion analyses. drwxr-xr-x root/root 0 2020-08-08 10:04 ./ drwxr-xr-x root/root 0 2020-08-08 10:04 ./usr/ drwxr-xr-x root/root 0 2020-08-08 10:04 ./usr/lib/ drwxr-xr-x root/root 0 2020-08-08 10:04 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-08-08 10:04 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2020-08-08 10:04 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/ -rw-r--r-- root/root 11635 2020-08-08 10:04 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/PKG-INFO -rw-r--r-- root/root 1 2020-08-08 10:04 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/dependency_links.txt -rw-r--r-- root/root 28 2020-08-08 10:04 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/requires.txt -rw-r--r-- root/root 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Build Type: any Build-Space: n/a Build-Time: 244 Distribution: groovy-proposed Host Architecture: armhf Install-Time: 125 Job: python-cobra_0.18.1-1.dsc Machine Architecture: arm64 Package: python-cobra Package-Time: 373 Source-Version: 0.18.1-1 Space: n/a Status: successful Version: 0.18.1-1 -------------------------------------------------------------------------------- Finished at 2020-08-08T17:18:45Z Build needed 00:06:13, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19785188 Scanning for processes to kill in build PACKAGEBUILD-19785188