https://launchpad.net/ubuntu/+source/python-csb/1.2.5+dfsg-5/+build/17882529 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-024 4.4.0-165-generic #193-Ubuntu SMP Tue Sep 17 17:42:52 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_178 python-lpbuildd_178 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Oct 19:29:26 ntpdate[1920]: adjust time server 10.211.37.1 offset 0.027507 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17882529 --image-type chroot /home/buildd/filecache-default/6814d4bbdedc39163e5a7d0f0a1f6a039f04bcb5 Creating target for build PACKAGEBUILD-17882529 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17882529 Starting target for build PACKAGEBUILD-17882529 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17882529 'deb http://ftpmaster.internal/ubuntu eoan main universe' 'deb http://ftpmaster.internal/ubuntu eoan-security main universe' 'deb http://ftpmaster.internal/ubuntu eoan-updates main universe' 'deb http://ftpmaster.internal/ubuntu eoan-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-17882529 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17882529 Updating target for build PACKAGEBUILD-17882529 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu eoan-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main amd64 Packages [969 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [505 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/universe amd64 Packages [8817 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5212 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 Packages [26.2 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main Translation-en [11.2 kB] Get:11 http://ftpmaster.internal/ubuntu eoan-proposed/universe amd64 Packages [115 kB] Get:12 http://ftpmaster.internal/ubuntu eoan-proposed/universe Translation-en [60.4 kB] Fetched 16.2 MB in 2s (6671 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libidn11 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: logsave The following packages will be upgraded: apt binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp cpp-9 dpkg dpkg-dev e2fsprogs fakeroot g++ g++-9 gcc gcc-9 gcc-9-base grep libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libidn2-0 libip4tc2 libisl21 libitm1 liblsan0 libp11-kit0 libperl5.28 libquadmath0 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan1 libudev1 linux-libc-dev login passwd perl perl-base perl-modules-5.28 systemd systemd-sysv tzdata 64 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 66.8 MB of archives. After this operation, 1850 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main amd64 coreutils amd64 8.30-3ubuntu2 [1249 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main amd64 dpkg amd64 1.19.7ubuntu2 [1130 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main amd64 grep amd64 3.3-1build1 [148 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main amd64 login amd64 1:4.5-1.1ubuntu4 [264 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main amd64 libperl5.28 amd64 5.28.1-6build1 [3818 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main amd64 perl amd64 5.28.1-6build1 [204 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main amd64 perl-base amd64 5.28.1-6build1 [1510 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main amd64 perl-modules-5.28 all 5.28.1-6build1 [2812 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6-dev amd64 2.30-0ubuntu2 [2548 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-dev-bin amd64 2.30-0ubuntu2 [71.6 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main amd64 linux-libc-dev amd64 5.3.0-18.19 [1065 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6 amd64 2.30-0ubuntu2 [2725 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-bin amd64 2.30-0ubuntu2 [634 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main amd64 libcc1-0 amd64 9.2.1-9ubuntu2 [49.1 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils-x86-64-linux-gnu amd64 2.33-2ubuntu1 [1639 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main amd64 libbinutils amd64 2.33-2ubuntu1 [474 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils-common amd64 2.33-2ubuntu1 [203 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils amd64 2.33-2ubuntu1 [3400 B] Get:19 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc-9-base amd64 9.2.1-9ubuntu2 [19.3 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcc1 amd64 1:9.2.1-9ubuntu2 [40.8 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main amd64 libgomp1 amd64 9.2.1-9ubuntu2 [89.3 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main amd64 libitm1 amd64 9.2.1-9ubuntu2 [28.2 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main amd64 libatomic1 amd64 9.2.1-9ubuntu2 [9220 B] Get:24 http://ftpmaster.internal/ubuntu eoan/main amd64 libasan5 amd64 9.2.1-9ubuntu2 [395 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main amd64 liblsan0 amd64 9.2.1-9ubuntu2 [139 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main amd64 libtsan0 amd64 9.2.1-9ubuntu2 [301 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main amd64 libubsan1 amd64 9.2.1-9ubuntu2 [130 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main amd64 libquadmath0 amd64 9.2.1-9ubuntu2 [146 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main amd64 g++-9 amd64 9.2.1-9ubuntu2 [10.2 MB] Get:30 http://ftpmaster.internal/ubuntu eoan/main amd64 libstdc++-9-dev amd64 9.2.1-9ubuntu2 [1707 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcc-9-dev amd64 9.2.1-9ubuntu2 [2359 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc-9 amd64 9.2.1-9ubuntu2 [9763 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main amd64 cpp-9 amd64 9.2.1-9ubuntu2 [8957 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main amd64 libstdc++6 amd64 9.2.1-9ubuntu2 [511 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main amd64 libisl21 amd64 0.21-2 [576 kB] Get:36 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 systemd-sysv amd64 242-7ubuntu3 [9364 B] Get:37 http://ftpmaster.internal/ubuntu eoan/main amd64 libapparmor1 amd64 2.13.3-5ubuntu1 [35.5 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main amd64 libidn2-0 amd64 2.2.0-2 [50.4 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main amd64 libp11-kit0 amd64 0.23.17-2 [188 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main amd64 libtasn1-6 amd64 4.14-3 [37.8 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main amd64 libgnutls30 amd64 3.6.9-5ubuntu1 [792 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main amd64 libip4tc2 amd64 1.8.3-2ubuntu5 [20.4 kB] Get:43 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 systemd amd64 242-7ubuntu3 [3435 kB] Get:44 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 libsystemd0 amd64 242-7ubuntu3 [261 kB] Get:45 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 libudev1 amd64 242-7ubuntu3 [76.4 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main amd64 libapt-pkg5.90 amd64 1.9.4 [847 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main amd64 apt amd64 1.9.4 [1279 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main amd64 libext2fs2 amd64 1.45.3-4ubuntu2 [181 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main amd64 e2fsprogs amd64 1.45.3-4ubuntu2 [526 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main amd64 logsave amd64 1.45.3-4ubuntu2 [9836 B] Get:51 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcrypt20 amd64 1.8.4-5ubuntu2 [419 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main amd64 passwd amd64 1:4.5-1.1ubuntu4 [815 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main amd64 libcom-err2 amd64 1.45.3-4ubuntu2 [9160 B] Get:54 http://ftpmaster.internal/ubuntu eoan/main amd64 libss2 amd64 1.45.3-4ubuntu2 [11.3 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-2ubuntu6 [127 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main amd64 libsqlite3-0 amd64 3.29.0-2 [536 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main amd64 tzdata all 2019c-3 [208 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main amd64 g++ amd64 4:9.2.1-3.1ubuntu1 [1612 B] Get:59 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc amd64 4:9.2.1-3.1ubuntu1 [5216 B] Get:60 http://ftpmaster.internal/ubuntu eoan/main amd64 cpp amd64 4:9.2.1-3.1ubuntu1 [27.6 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main amd64 dpkg-dev all 1.19.7ubuntu2 [679 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main amd64 libdpkg-perl all 1.19.7ubuntu2 [230 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main amd64 build-essential amd64 12.8ubuntu1 [4624 B] Get:64 http://ftpmaster.internal/ubuntu eoan/main amd64 libfakeroot amd64 1.24-1 [25.7 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main amd64 fakeroot amd64 1.24-1 [62.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.8 MB in 1s (70.9 MB/s) (Reading database ... 12730 files and directories currently installed.) 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Setting up binutils (2.33-2ubuntu1) ... Setting up libgcc-9-dev:amd64 (9.2.1-9ubuntu2) ... Setting up perl (5.28.1-6build1) ... Setting up libdpkg-perl (1.19.7ubuntu2) ... Setting up cpp (4:9.2.1-3.1ubuntu1) ... Setting up libc6-dev:amd64 (2.30-0ubuntu2) ... Setting up gcc-9 (9.2.1-9ubuntu2) ... Setting up libstdc++-9-dev:amd64 (9.2.1-9ubuntu2) ... Setting up gcc (4:9.2.1-3.1ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu2) ... Setting up g++-9 (9.2.1-9ubuntu2) ... Setting up g++ (4:9.2.1-3.1ubuntu1) ... Setting up build-essential (12.8ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17882529 amd64 eoan-proposed -c chroot:build-PACKAGEBUILD-17882529 --arch=amd64 --dist=eoan-proposed --nolog -A python-csb_1.2.5+dfsg-5.dsc Initiating build PACKAGEBUILD-17882529 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-165-generic #193-Ubuntu SMP Tue Sep 17 17:42:52 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-024.buildd +==============================================================================+ | python-csb 1.2.5+dfsg-5 (amd64) 12 Oct 2019 19:29 | +==============================================================================+ Package: python-csb Version: 1.2.5+dfsg-5 Source Version: 1.2.5+dfsg-5 Distribution: eoan-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/python-csb-hqf_xD/python-csb-1.2.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-csb-hqf_xD' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17882529/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-csb_1.2.5+dfsg-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Xqux2i/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Xqux2i/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Xqux2i/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Xqux2i/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Xqux2i/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Xqux2i/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (284 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libidn11 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Xqux2i/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12746 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools dpkg-deb: building package 'sbuild-build-depends-python-csb-dummy' in '/<>/resolver-XcKmfv/apt_archive/sbuild-build-depends-python-csb-dummy.deb'. Ign:1 copy:/<>/resolver-XcKmfv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-XcKmfv/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-XcKmfv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-XcKmfv/apt_archive ./ Sources [252 B] Get:5 copy:/<>/resolver-XcKmfv/apt_archive ./ Packages [567 B] Fetched 2938 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install python-csb build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libidn11 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libicu63 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python-matplotlib-data python3 python3-all python3-cycler python3-dateutil python3-decorator python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-numpy python3-pkg-resources python3-pyparsing python3-scipy python3-setuptools python3-six python3.7 python3.7-minimal ttf-bitstream-vera Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt4 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python-pyparsing-doc python-scipy-doc python-setuptools-doc python3.7-venv python3.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python3-pil python3-tk The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libicu63 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python-matplotlib-data python3 python3-all python3-cycler python3-dateutil python3-decorator python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-numpy python3-pkg-resources python3-pyparsing python3-scipy python3-setuptools python3-six python3.7 python3.7-minimal sbuild-build-depends-python-csb-dummy ttf-bitstream-vera 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 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Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:amd64 (3.7.5-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-7) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.5~rc1-2) ... Setting up gettext (0.19.8.1-9) ... Setting up python3 (3.7.5-1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... 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Processing triggers for libc-bin (2.30-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-165-generic amd64 (x86_64) Toolchain package versions: binutils_2.33-2ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-9ubuntu2 gcc-9_9.2.1-9ubuntu2 libc6-dev_2.30-0ubuntu2 libstdc++-9-dev_9.2.1-9ubuntu2 libstdc++6_9.2.1-9ubuntu2 linux-libc-dev_5.3.0-18.19 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.4 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu6 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.33-2ubuntu1 binutils-common_2.33-2ubuntu1 binutils-x86-64-linux-gnu_2.33-2ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.6-9.2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-9ubuntu2 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1ubuntu2 debianutils_4.8.6.3 dh-autoreconf_19 dh-python_4.20190722ubuntu1 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-1 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu2 file_1:5.37-5 findutils_4.6.0+git+20190209-2ubuntu1 fonts-lyx_2.3.3-2 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-9ubuntu2 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-9ubuntu2 gcc-9-base_9.2.1-9ubuntu2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1build1 groff-base_1.22.4-3 gzip_1.10-0ubuntu3 hostname_3.22 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapparmor1_2.13.3-5ubuntu1 libapt-pkg5.90_1.9.4 libarchive-zip-perl_1.65-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-9ubuntu2 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-9ubuntu2 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2ubuntu1 libaudit1_1:2.8.5-2ubuntu1 libbinutils_2.33-2ubuntu1 libblas3_3.8.0-2 libblkid1_2.34-0.1ubuntu2 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.30-0ubuntu2 libc-dev-bin_2.30-0ubuntu2 libc6_2.30-0ubuntu2 libc6-dev_2.30-0ubuntu2 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.2.1-9ubuntu2 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.0-3ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdebhelper-perl_12.6.1ubuntu2 libdevmapper1.02.1_2:1.02.155-2ubuntu6 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libexpat1_2.2.7-2 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.0-1 libfreetype6_2.9.1-4 libgcc-9-dev_9.2.1-9ubuntu2 libgcc1_1:9.2.1-9ubuntu2 libgcrypt20_1.8.4-5ubuntu2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-9ubuntu2 libglib2.0-0_2.62.1-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5ubuntu1 libgomp1_9.2.1-9ubuntu2 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libitm1_9.2.1-9ubuntu2 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libjson-c4_0.13.1+dfsg-4 libkmod2_26-1ubuntu1 liblapack3_3.8.0-2 liblbfgsb0_3.0+dfsg.3-7 liblockfile-bin_1.15-1 liblockfile1_1.15-1 liblsan0_9.2.1-9ubuntu2 liblz4-1_1.9.1-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1ubuntu2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1ubuntu1 libncursesw6_6.1+20190803-1ubuntu1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpython3-stdlib_3.7.5-1 libpython3.7-minimal_3.7.5~rc1-2 libpython3.7-stdlib_3.7.5~rc1-2 libquadmath0_9.2.1-9ubuntu2 libreadline8_8.0-3 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu2 libsqlite3-0_3.29.0-2 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-9ubuntu2 libstdc++6_9.2.1-9ubuntu2 libsub-override-perl_0.09-2 libsystemd0_242-7ubuntu3 libtasn1-6_4.14-3 libtinfo6_6.1+20190803-1ubuntu1 libtool_2.4.6-11 libtsan0_9.2.1-9ubuntu2 libubsan1_9.2.1-9ubuntu2 libuchardet0_0.0.6-3 libudev1_242-7ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.0-18.19 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.0.1ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17ubuntu3 mime-support_3.63ubuntu1 mount_2.34-0.1ubuntu2 ncurses-base_6.1+20190803-1ubuntu1 ncurses-bin_6.1+20190803-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.28.1-6build1 perl-base_5.28.1-6build1 perl-modules-5.28_5.28.1-6build1 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python-matplotlib-data_3.0.2-2 python3_3.7.5-1 python3-all_3.7.5-1 python3-cycler_0.10.0-1 python3-dateutil_2.7.3-3 python3-decorator_4.3.0-1.1 python3-distutils_3.7.5~rc1-1 python3-kiwisolver_1.0.1-2build2 python3-lib2to3_3.7.5~rc1-1 python3-matplotlib_3.0.2-2 python3-minimal_3.7.5-1 python3-numpy_1:1.16.2-1ubuntu1 python3-pkg-resources_41.1.0-1 python3-pyparsing_2.2.0+dfsg1-2 python3-scipy_1.2.2-4 python3-setuptools_41.1.0-1 python3-six_1.12.0-2build1 python3.7_3.7.5~rc1-2 python3.7-minimal_3.7.5~rc1-2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-csb-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_242-7ubuntu3 systemd-sysv_242-7ubuntu3 sysvinit-utils_2.95-5ubuntu2 tar_1.30+dfsg-6 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Oct 3 12:07:20 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-csb_1.2.5+dfsg-5.dsc dpkg-source: info: extracting python-csb in python-csb-1.2.5+dfsg dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz dpkg-source: info: unpacking python-csb_1.2.5+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_online_tests.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying fix_setup.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17882529 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17882529 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17882529 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config Warning: 'classifiers' should be a list, got type 'tuple' running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb copying csb/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb copying csb/build.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io copying csb/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io copying csb/io/tsv.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io copying csb/io/plots.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio copying csb/bio/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech copying csb/statmech/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech copying csb/statmech/wham.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test copying csb/test/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test copying csb/test/app.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/maxent.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/rand.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/ars.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric copying csb/numeric/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric copying csb/numeric/integrators.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core copying csb/core/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/csfrag.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/bfit.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/buildhmm.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/embd.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/bfite.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/precision.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/promix.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/hhfrag.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/helloworld.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/hhsearch.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt writing manifest file 'csb.egg-info/SOURCES.txt' reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/out.clans -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/test.fa -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/test.hhm -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data creating /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources debian/rules override_dh_auto_test make[1]: Entering directory '/<>/python-csb-1.2.5+dfsg' LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ cd {build_dir}; \ PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2' I: pybuild base:217: set -e; \ cd /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build; \ PYTHONPATH=/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build PYTHONWARNINGS=d python3.7 csb/test/app.py --generated-resources /tmp --verbosity 2 /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:162: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py:210: DeprecationWarning: invalid escape sequence \d m = re.search('(\d+)\D+(\d+)', line).groups() /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py:260: DeprecationWarning: invalid escape sequence \s seq = re.sub('\s+', '', ''.join(lines[1:])) /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py:307: DeprecationWarning: invalid escape sequence \- pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__init__.py:2129: DeprecationWarning: invalid escape sequence \s string = ''.join(re.split('\s+', string)) /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__init__.py:2131: DeprecationWarning: invalid escape sequence \s conf_string = ''.join(re.split('\s+', conf_string)) /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__init__.py:566: DeprecationWarning: invalid escape sequence \w self._residues += re.sub('([^\w\-\.])+', '', string) /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:1222: DeprecationWarning: invalid escape sequence \d res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'> Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__init__.py:347: DeprecationWarning: invalid escape sequence \s """ /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence \s re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence \s re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence \s re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence \s re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence \s input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence \d residues = re.compile('(\d+)\s*residues\s\|') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:33: DeprecationWarning: invalid escape sequence \s ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:34: DeprecationWarning: invalid escape sequence \s '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:35: DeprecationWarning: invalid escape sequence \s '%\s*gener\s*(\d+\.\d+)%\s*disall') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:36: DeprecationWarning: invalid escape sequence \s labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:37: DeprecationWarning: invalid escape sequence \s labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:38: DeprecationWarning: invalid escape sequence \s bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:39: DeprecationWarning: invalid escape sequence \s g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence \s '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') testWrite (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp39u7ikqb' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testGzipFail (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLock (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLockGzip (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testRecusionLimit (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testSimple (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testAllMarkers (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testDel (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testRead (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testReadAll (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testStartMarker (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testContextManager (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWrite (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvbikm_2g' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7op0nrk9' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbvg_r_n_' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testContextManager (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testFlush (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testWrite (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testExitCode (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestShell) ... ok testSTDERR (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestShell) ... ok testSTDOUT (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestShell) ... ok testArrayCompatibility (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testDataAccess (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testDump (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5z6c173f' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testIteration (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testSQLDataAccess (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testScalar (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testSelect (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testUpdate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testWhere (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testAutoCleanup (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testCallForwarding (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testClose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testContextManager (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testMultipleHandles (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk15nvvce' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testClose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testContextManager (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testRmsdMirrorImage (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testCenterOfMass (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDeg (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistance (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistanceMatrix (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFindPairs (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFit (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFitWellordered (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testInertiaTensor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRad (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRadiusOfGyration (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsdCur (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testScaleAndFit (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testSecondMoments (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmScore (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmSuperimpose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTorsionRmsd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFormat (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testMatches (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testRows (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testSize (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testToString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testAdd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testColumns (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testFormat (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testGapAt (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testIndexer (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowColumns (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowMap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowResidues (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRows (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSize (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testAlphabet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testDump (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpg5b78qkk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi0vjn6__' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testHeader (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testId (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIndexeres (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testStrip (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testToString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testAlphabet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testDump (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpazops3qh' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpof1rv27c' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testHeader (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testId (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIndexeres (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testStrip (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testToString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testAlphabet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testDump (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxownqii0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxr6qxtvs' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testHeader (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testId (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIndexeres (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testStrip (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testToString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testAdd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testColumns (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testFormat (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testGapAt (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testIndexer (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowColumns (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowMap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowResidues (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRows (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSize (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testToFASTA (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqjpkf4rm' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpce8osqbp' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testEnd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testGaps (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdenticals (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdentity (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIsEmpty (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQstart (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQuery (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testScore (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStart (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStr (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testSubject (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testAlign (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testEmptyAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testScore (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok testAlign (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testEmptyAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testScore (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok testCreate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testGuess (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadFile (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadShifts (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testGuess (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadFile (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadShifts (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprlkgl4ew' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmps461gtxf' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp20xft_fk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpewtm4sho' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqu6k57ft' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpv7z1pegk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testReadFASTA (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testStrict (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testCreate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok testParseString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadJunk (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testAddAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcerp8si3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprqwxuch2' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testReadFASTA (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testParseFile (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testRead (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testMakeEntry (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testParseFile (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok testLargeHitlist (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) ... ok testFormatStructure (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplknq2lhm' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseProbability (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseRedundantA3M (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp31pyd49a' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok testRead (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testReadFile (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testBuild (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok testRead (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok testClansEntryAddingAndSorting (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansEntrySortingWithCustomKeyFunction (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansInit (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testDuplicateEntryError (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testGetEntry (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testColorInit (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testColorSetter (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithCorrectInput (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithWrongInput (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testToClansColor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testWrittenIsIdenticalToOriginal (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> self._clans_instance.filename)).read().split('\n', 1)[1] ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testInstatiation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testUnknownParamFail (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testParseFile (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParser) ... ok testPrematureGetter (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParser) ... ok testAddingAndRemovingSeqgroups (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAddingClansEntries (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAppendingSeqgroupsFromOtherInstance (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testInit (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testRemovingClansEntries (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testCommaSplitting (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) ... ok testMap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok testModifiedResidueMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testFind (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testGet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testRemove (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testAccession (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testChain (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testEntryID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFormat (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFactory (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok testMap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testModifiedResidueMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testAdd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testFind (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testGet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testRemove (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok runTest (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok testFileName (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testGuessSequenceType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testModels (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseBiomolecule (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseHetMolecules (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseModels (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidueSafe (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseStructure (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testHetMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) ... ok testNonStandardResidueMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) ... ok testCombinedMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFastMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFileName (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testGuessSequenceType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMapper (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testModels (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseModels (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidueSafe (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseStructure (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testRobustMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok testModifiedResidueMapping (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) ... ok testAccession (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testChain (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testEntryID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testFormat (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testAccession (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testChain (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testEntryID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFormat (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFactory (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReadRawHeader (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReconstructHeader (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testWriteDensity (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testAnchoredAround (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBackbone (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testEnd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testOverlap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQEnd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQStart (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSD (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSDTo (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSourceID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testStart (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsionAt (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testCount (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testMean (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrink (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrinkOne (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testAccession (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testEnd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testFomObject (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQEnd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQStart (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testResidues (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testScore (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSourceID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testStart (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testTorsion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testDump (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmper3zh6eg' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testIndexer (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMarkUnconfident (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testRead (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSort (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSources (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testStartingAt (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMakeChopped (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeCombined (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFiltered (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFragset (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMix (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testAccession (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testEntryID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFilter (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromProfile (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testMatches (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testResidues (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testAssignments (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testClosest (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testFilter (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testLongest (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testNative (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testPrecision (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testCompute (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testComputeSingle (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testFlatTorsionMap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testGetAngles (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testAppendAtom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testApplyTransformation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testClone (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testListCoordinates (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... skipped 'may fail on slower machines' testApplyTransformation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testItems (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testListCoordinates (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testElement (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testName (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testResidue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testSerialNumber (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testSorting (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testVector (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testAccession (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlign (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlphabet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testClone (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testComputeTorsion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testContains (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testEntryID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFind (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFromSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testHeader (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testId (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testListCoordinates (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testRMSD (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSecStructure (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSequence (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSuperimpose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMScore (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMSuperimpose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testElement (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testFind (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testIteration (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testName (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testResidue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testSerialNumber (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testSorting (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testVector (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testComponents (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testFirstModel (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testItems (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testToPDB (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testFactory (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testHasStructure (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testId (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testInsertionCode (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testIsModified (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testItems (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testLabel (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testSequenceNumber (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testTorsion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testAccession (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFirstChain (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFromChain (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testItems (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToPDB (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpppswvpxa' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvwcxuzb0' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testIndexer (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testNeff (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testRank (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testResidue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testAlignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testEquals (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIncludes (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testSurpasses (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testSort (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testAllLayers (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testChain (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConvertScores (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEmissionSimilarity (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEnd (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testID (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testLayers (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testName (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testScoreUnits (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSegment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStart (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStartInsertion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStructure (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSubregion (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testToHMM (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok testToHMM (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok runTest (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok testBackground (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testEmission (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testSilent (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testTransitions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testType (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testConnected (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testFactory (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testGetAtoms (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testLabel (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testNegative (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testPositive (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testScore (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testAtomContacts (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testAtoms (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testChain (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCompare (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnect (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnected (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContacts (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContains (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCutoff (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testPosition (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testResidueContacts (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromAtom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromShift (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromString (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testGetAtom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testMatch (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testParse (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testConnectedDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testElement (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testGet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasConnectedDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasElement (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testIntensity (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testNumDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testConnect (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testConnectedDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testElement (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasConnectedDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasElement (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testLen (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMaxIntensity (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMinIntensity (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumProtonDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testProtonDimensions (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testFactory (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testNonparametricWHAM (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testWHAM (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testBoltzmann (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testComposite (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testTsallis (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testConformerMixture (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSegmentMixture (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testMaxent (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' testSampleFromHistogram (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedGamma (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedNormal (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testGamma (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testGammaMAP (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testInvGamma (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testInvGammaMAP (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testAutorcorrelation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircmean (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircvar (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCumulative (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testEntropy (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testKurtosis (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testSkewness (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testNormal (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok testAcceptSwap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testSwap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testAcceptProposal (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testAcceptanceRate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testEnergy (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testLastMoveAccepted (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testSample (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testTemperature (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testUpdateStatistics (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testCalcPacc (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testHamiltonian (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testPropose (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__init__.py:1019: RuntimeWarning: covariance is not symmetric positive-semidefinite. cov=self._mass_matrix) /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__init__.py:320: RuntimeWarning: covariance is not symmetric positive-semidefinite. cov=covariance_matrix) ok testHMCPropagator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCPropagatorMM (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testNCMCPropagator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCStepRENS (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testMDRENS (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testReplicaExchangeMC (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testThermostattedMDRensMM (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testProposeWithMomentum (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testProposeWithoutMomentum (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testHMCPropagation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testNonequilibriumStepPropagator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testPlainMDPropagation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonian (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonianPerturbation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testStep (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testCalcPaccSwap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testProposeSwap (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testFiveReplicas (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__init__.py:867: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. for t2 in trajs2]) ok testFiveReplicasOffset (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testFourReplicas (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testTwoReplicas (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testSet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testIsVirtual (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testSet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testBindTo (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testConstrucor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testFindBaseParameter (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testIsVirtual (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testName (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testSet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testValue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testAssignment (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testParameterChaining (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testProperties (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testParameterValidation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testLogProb (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameterEstimation (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testCaching (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testDihedralAngles (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.MathRegressions) ... ok testDegree2Radian (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testDihedralAngles (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testExp (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testFromPolar (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testLog (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testPolar (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testRadian2Degree (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testRotationMatrix (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testLogTrapezoidal (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLogTrapezoidal2D (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testSimpson2D (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLeapFrog (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testVelocityVerlet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testFastLeapFrog (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testLeapFrog (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testVelocityVerlet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testBool (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testIndices (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testUpdate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok runTest (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDeepCopy) ... /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. self.assertNotEquals(id(obj), id(copy)) ok testAppend (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testBool (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testGetitem (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testLength (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testRemove (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testSet (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testUpdate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testComparison (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testConstructor (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testCreate (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testInOperator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testIsMember (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testIterator (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testMembers (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testMutability (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testNames (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testParseName (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testParseValue (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testRepr (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testSerialization (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testStr (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testValues (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok runTest (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestIterable) ... ok runTest (<>/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestOrderedDict) ... ok ---------------------------------------------------------------------- Ran 697 tests in 72.074s OK (skipped=6) make[1]: Leaving directory '/<>/python-csb-1.2.5+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/python-csb-1.2.5+dfsg/debian/python3-csb Warning: 'classifiers' should be a list, got type 'tuple' running install running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' running install_lib creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7 creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/__pycache__ creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/__pycache__/tsv.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/tsv.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/plots.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/__pycache__ creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/alignment.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/mrc.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/dssp.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/mrc.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/fasta.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/whatif.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/cs.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/clans.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/hhpred.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/procheck.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/noe.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/psipred.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/dssp.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/svg.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/fasta.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/vasco.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/cs.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/clans.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/noe.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/rosetta.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/pseudocounts.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__pycache__/wham.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__pycache__/ensembles.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/wham.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/ensembles.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/build.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1nz9.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.a3m -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/out.clans -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1nz9A.frags -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.legacy.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/3shm_ca.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.hhm -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v3.str -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/3p1u.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.regular.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v2.str -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/mapping.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/struct.ali.mfasta -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2JZC.sum -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test.fa -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/ISL5.1.isl -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/pdbout.txt -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/standard.tsv -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test.hhm -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/mapping3.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified2.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/csb.tsv -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1C3W_10.mrc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test2.hhm -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/mapping2.pdb -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy2.peaks -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1b24a2.hhm -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy1.peaks -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Sparky.peaks -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.mfasta -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1ea0a1.hhr -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/app.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/__pycache__ creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/__pycache__ creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/__pycache__ creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/wham.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/ensembles.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/mixtures.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/maxent.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/rand.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/scalemixture.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/ars.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/integrators.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/mixtures.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/maxent.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/rand.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/maxent.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/scalemixture.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/mixtures.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/ars.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/rand.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/scalemixture.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/ars.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/singlechain.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/multichain.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/propagators.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/parameterized.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/__pycache__/integrators.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/integrators.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core/__pycache__/__init__.cpython-37.pyc -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core/__pycache__ copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core creating /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/csfrag.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/bfit.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/buildhmm.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/__init__.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/embd.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/bfite.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/precision.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/promix.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/hhfrag.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/helloworld.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /<>/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/hhsearch.py -> /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/tsv.py to tsv.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/plots.py to plots.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/mrc.py to mrc.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/psipred.py to psipred.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/dssp.py to dssp.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/procheck.py to procheck.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/svg.py to svg.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/fasta.py to fasta.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/vasco.py to vasco.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/cs.py to cs.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/clans.py to clans.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/noe.py to noe.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/whatif.py to whatif.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/wham.py to wham.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/build.py to build.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/app.py to app.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/maxent.py to maxent.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/rand.py to rand.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/ars.py to ars.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/integrators.py to integrators.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/csfrag.py to csfrag.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/bfit.py to bfit.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/embd.py to embd.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/bfite.py to bfite.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/precision.py to precision.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/promix.py to promix.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/helloworld.py to helloworld.cpython-37.pyc byte-compiling /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-37.pyc running install_egg_info Copying csb.egg-info to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /<>/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin debian/rules override_dh_install make[1]: Entering directory '/<>/python-csb-1.2.5+dfsg' dh_install mkdir -p debian/csb/usr mv debian/python3-csb/usr/bin debian/csb/usr make[1]: Leaving directory '/<>/python-csb-1.2.5+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-csb (in debian/python3-csb); do_strip: , oemstrip: pkgstriptranslations: processing csb (in debian/csb); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-csb/DEBIAN/control, package python3-csb, directory debian/python3-csb pkgstripfiles: Truncating usr/share/doc/python3-csb/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-csb ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-5_all.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/csb/DEBIAN/control, package csb, directory debian/csb Searching for duplicated docs in dependency python3-csb... symlinking changelog.Debian.gz in csb to file in python3-csb pkgstripfiles: Running PNG optimization (using 4 cpus) for package csb ... pkgstripfiles: No PNG files. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-5_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../python-csb_1.2.5+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20191012-1931 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-csb_1.2.5+dfsg-5_amd64.changes: -------------------------------------- Format: 1.8 Date: Thu, 03 Oct 2019 14:01:27 +0200 Source: python-csb Binary: csb python3-csb Architecture: all Version: 1.2.5+dfsg-5 Distribution: eoan-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: csb - Computational Structural Biology Toolbox (CSB) python3-csb - Python framework for structural bioinformatics (Python3 version) Closes: 941643 Changes: python-csb (1.2.5+dfsg-5) unstable; urgency=medium . [ Matthias Klose ] * Stop running Python2 autopkg tests. Closes: #941643 . [ Andreas Tille ] * Set upstream metadata fields: Repository. Checksums-Sha1: eefa33ae962bef7360af295dfaa96dfecd813295 11328 csb_1.2.5+dfsg-5_all.deb 5f5c84beb2f3a0af551bc424996bccc65862bd85 6269 python-csb_1.2.5+dfsg-5_amd64.buildinfo 58f8b580c1f1dd8464dd4030aa72661cc2964788 2174984 python3-csb_1.2.5+dfsg-5_all.deb Checksums-Sha256: 7577d3f1937805a44f7977867f081a6c1cc24fc78ae4ba699947e7d7b0050cb9 11328 csb_1.2.5+dfsg-5_all.deb 4b5da5f0c60f56570b7de7925590d16b100ef10ff1a348f556204fc3451a44ca 6269 python-csb_1.2.5+dfsg-5_amd64.buildinfo c2f7fae3f965127d1279e92021c192ce7cf3742cc9aa6225ae542bca2ca89f14 2174984 python3-csb_1.2.5+dfsg-5_all.deb Files: f9329094f07bcc74695c3f4d49f2bba3 11328 science optional csb_1.2.5+dfsg-5_all.deb ffaea4dc994e12f835d5b75cf8668119 6269 science optional python-csb_1.2.5+dfsg-5_amd64.buildinfo 6b2f44dfe85eb86975f7508bf1221925 2174984 python optional python3-csb_1.2.5+dfsg-5_all.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ csb_1.2.5+dfsg-5_all.deb ------------------------ new debian package, version 2.0. size 11328 bytes: control archive=1320 bytes. 839 bytes, 20 lines control 1282 bytes, 21 lines md5sums Package: csb Source: python-csb Version: 1.2.5+dfsg-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 34 Depends: python3:any, python3-csb Section: science Priority: optional Homepage: https://github.com/csb-toolbox/CSB Description: Computational Structural Biology Toolbox (CSB) Computational Structural Biology Toolbox (CSB) is a Python class library for reading, storing and analyzing biomolecular structures in a variety of formats with rich support for statistical analyses. . CSB is designed for reusability and extensibility and comes with a clean, well-documented API following good object-oriented engineering practice. . This package contains some user executable tools. drwxr-xr-x root/root 0 2019-10-03 12:01 ./ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/bin/ -rwxr-xr-x root/root 372 2019-10-03 12:01 ./usr/bin/csb-bfit -rwxr-xr-x root/root 374 2019-10-03 12:01 ./usr/bin/csb-bfite -rwxr-xr-x root/root 380 2019-10-03 12:01 ./usr/bin/csb-buildhmm -rwxr-xr-x root/root 376 2019-10-03 12:01 ./usr/bin/csb-csfrag -rwxr-xr-x root/root 372 2019-10-03 12:01 ./usr/bin/csb-embd -rwxr-xr-x root/root 376 2019-10-03 12:01 ./usr/bin/csb-hhfrag -rwxr-xr-x root/root 380 2019-10-03 12:01 ./usr/bin/csb-hhsearch -rwxr-xr-x root/root 382 2019-10-03 12:01 ./usr/bin/csb-precision -rwxr-xr-x root/root 376 2019-10-03 12:01 ./usr/bin/csb-promix -rwxr-xr-x root/root 372 2019-10-03 12:01 ./usr/bin/csb-test drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/share/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/share/doc/csb/ lrwxrwxrwx root/root 0 2019-10-03 12:01 ./usr/share/doc/csb/changelog.Debian.gz -> ../python3-csb/changelog.Debian.gz -rw-r--r-- root/root 1634 2019-10-03 12:01 ./usr/share/doc/csb/copyright drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/share/man/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/share/man/man1/ -rw-r--r-- root/root 820 2019-10-03 12:01 ./usr/share/man/man1/csb-bfit.1.gz -rw-r--r-- root/root 749 2019-10-03 12:01 ./usr/share/man/man1/csb-bfite.1.gz -rw-r--r-- root/root 963 2019-10-03 12:01 ./usr/share/man/man1/csb-buildhmm.1.gz -rw-r--r-- root/root 770 2019-10-03 12:01 ./usr/share/man/man1/csb-csfrag.1.gz -rw-r--r-- root/root 716 2019-10-03 12:01 ./usr/share/man/man1/csb-embd.1.gz -rw-r--r-- root/root 1127 2019-10-03 12:01 ./usr/share/man/man1/csb-hhfrag.1.gz -rw-r--r-- root/root 551 2019-10-03 12:01 ./usr/share/man/man1/csb-hhsearch.1.gz -rw-r--r-- root/root 756 2019-10-03 12:01 ./usr/share/man/man1/csb-precision.1.gz -rw-r--r-- root/root 628 2019-10-03 12:01 ./usr/share/man/man1/csb-promix.1.gz -rw-r--r-- root/root 824 2019-10-03 12:01 ./usr/share/man/man1/csb-test.1.gz python3-csb_1.2.5+dfsg-5_all.deb -------------------------------- new debian package, version 2.0. size 2174984 bytes: control archive=4768 bytes. 897 bytes, 20 lines control 13074 bytes, 141 lines md5sums 248 bytes, 12 lines * postinst #!/bin/sh 397 bytes, 12 lines * prerm #!/bin/sh Package: python3-csb Source: python-csb Version: 1.2.5+dfsg-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8355 Depends: python3-matplotlib, python3-numpy, python3-scipy, python3:any Section: python Priority: optional Homepage: https://github.com/csb-toolbox/CSB Description: Python framework for structural bioinformatics (Python3 version) Computational Structural Biology Toolbox (CSB) is a Python class library for reading, storing and analyzing biomolecular structures in a variety of formats with rich support for statistical analyses. . CSB is designed for reusability and extensibility and comes with a clean, well-documented API following good object-oriented engineering practice. . This is the Python3 version of the package. drwxr-xr-x root/root 0 2019-10-03 12:01 ./ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/python3/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb-1.2.5.egg-info/ -rw-r--r-- root/root 6372 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb-1.2.5.egg-info/PKG-INFO -rw-r--r-- root/root 1 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb-1.2.5.egg-info/dependency_links.txt -rw-r--r-- root/root 358 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb-1.2.5.egg-info/entry_points.txt -rw-r--r-- root/root 7 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb-1.2.5.egg-info/requires.txt -rw-r--r-- root/root 4 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb-1.2.5.egg-info/top_level.txt drwxr-xr-x root/root 0 2019-10-03 12:01 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2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb/apps/hhsearch.py -rw-r--r-- root/root 12054 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/apps/precision.py -rw-r--r-- root/root 3456 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/apps/promix.py drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb/bio/ -rw-r--r-- root/root 49 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/__init__.py drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb/bio/fragments/ -rw-r--r-- root/root 57883 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/fragments/__init__.py -rw-r--r-- root/root 14544 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/fragments/rosetta.py drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb/bio/hmm/ -rw-r--r-- root/root 58897 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/hmm/__init__.py -rw-r--r-- root/root 16237 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/hmm/pseudocounts.py drwxr-xr-x root/root 0 2019-10-03 12:01 ./usr/lib/python3/dist-packages/csb/bio/io/ -rw-r--r-- root/root 730 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/__init__.py -rw-r--r-- root/root 62742 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/clans.py -rw-r--r-- root/root 6527 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/cs.py -rw-r--r-- root/root 4045 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/dssp.py -rw-r--r-- root/root 24015 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/fasta.py -rw-r--r-- root/root 33312 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/hhpred.py -rw-r--r-- root/root 9732 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/mrc.py -rw-r--r-- root/root 8633 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/noe.py -rw-r--r-- root/root 3052 2017-07-04 20:09 ./usr/lib/python3/dist-packages/csb/bio/io/procheck.py 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./usr/share/doc/python3-csb/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 30640 Build-Time: 84 Distribution: eoan-proposed Host Architecture: amd64 Install-Time: 17 Job: python-csb_1.2.5+dfsg-5.dsc Machine Architecture: amd64 Package: python-csb Package-Time: 102 Source-Version: 1.2.5+dfsg-5 Space: 30640 Status: successful Version: 1.2.5+dfsg-5 -------------------------------------------------------------------------------- Finished at 20191012-1931 Build needed 00:01:42, 30640k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17882529 Scanning for processes to kill in build PACKAGEBUILD-17882529