https://launchpad.net/ubuntu/+source/python-pybedtools/0.9.0-1build1/+build/23249356 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-072 5.11.0-1029-generic #32~20.04.1-Ubuntu SMP Fri Jan 28 13:38:22 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_209~536~ubuntu20.04.1 python3-lpbuildd_209~536~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 17 Mar 16:44:49 ntpdate[2010379]: adjust time server 10.211.37.1 offset -0.000580 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23249356 --image-type chroot /home/buildd/filecache-default/03bec7884d85d5bd8bcd177f093129b6620b2195 Creating target for build PACKAGEBUILD-23249356 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23249356 Starting target for build PACKAGEBUILD-23249356 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23249356 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23249356 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23249356 Updating target for build PACKAGEBUILD-23249356 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main riscv64 Packages [1298 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe riscv64 Packages [12.9 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5644 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 Packages [70.5 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [33.8 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 Packages [346 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [186 kB] Fetched 21.6 MB in 33s (646 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: gcc-12-base libperl5.34 libsemanage2 libsepol2 libssl3 perl-modules-5.34 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-riscv64-linux-gnu bsdutils bzip2 ca-certificates coreutils cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libprocps8 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata usrmerge util-linux zlib1g 131 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 89.8 MB of archives. After this operation, 53.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcrypt-dev riscv64 1:4.4.27-1 [249 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main riscv64 libc6-dev riscv64 2.35-0ubuntu3 [3236 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main riscv64 libc-dev-bin riscv64 2.35-0ubuntu3 [18.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main riscv64 libaudit-common all 1:3.0.7-1 [4782 B] Get:5 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcap-ng0 riscv64 0.7.9-2.2build3 [10.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main riscv64 libaudit1 riscv64 1:3.0.7-1 [45.5 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main riscv64 perl-modules-5.34 all 5.34.0-3ubuntu1 [2975 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main riscv64 libperl5.34 riscv64 5.34.0-3ubuntu1 [4206 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main riscv64 perl riscv64 5.34.0-3ubuntu1 [232 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main riscv64 perl-base riscv64 5.34.0-3ubuntu1 [1639 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main riscv64 bzip2 riscv64 1.0.8-5 [33.9 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbz2-1.0 riscv64 1.0.8-5 [36.2 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgdbm6 riscv64 1.23-1 [29.9 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgdbm-compat4 riscv64 1.23-1 [5860 B] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 zlib1g riscv64 1:1.2.11.dfsg-2ubuntu8 [55.8 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main riscv64 debconf all 1.5.79ubuntu1 [126 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpam0g riscv64 1.4.0-11ubuntu1 [56.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcrypt1 riscv64 1:4.4.27-1 [97.4 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 linux-libc-dev riscv64 5.15.0-23.23 [1280 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main riscv64 libc6 riscv64 2.35-0ubuntu3 [2640 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main riscv64 libc-bin riscv64 2.35-0ubuntu3 [561 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main riscv64 gcc-12-base riscv64 12-20220313-1ubuntu1 [18.9 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcc-s1 riscv64 12-20220313-1ubuntu1 [44.1 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main riscv64 base-files riscv64 12ubuntu2 [62.9 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main riscv64 debianutils riscv64 5.5-1ubuntu1 [105 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main riscv64 bash riscv64 5.1-6ubuntu1 [647 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main riscv64 bsdutils riscv64 1:2.37.2-4ubuntu3 [91.4 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main riscv64 coreutils riscv64 8.32-4.1ubuntu1 [1318 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgpg-error0 riscv64 1.43-3 [63.8 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcrypt20 riscv64 1.9.4-3ubuntu2 [498 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main riscv64 libstdc++6 riscv64 12-20220313-1ubuntu1 [690 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main riscv64 libssl3 riscv64 3.0.1-0ubuntu1 [1449 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main riscv64 libargon2-1 riscv64 0~20171227-0.3 [19.7 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main riscv64 libblkid1 riscv64 2.37.2-4ubuntu3 [149 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre2-8-0 riscv64 10.39-3 [136 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main riscv64 libselinux1 riscv64 3.3-1build1 [71.0 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main riscv64 libudev1 riscv64 249.11-0ubuntu1 [70.3 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdevmapper1.02.1 riscv64 2:1.02.175-2.1ubuntu4 [131 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main riscv64 libuuid1 riscv64 2.37.2-4ubuntu3 [27.3 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcryptsetup12 riscv64 2:2.4.3-1ubuntu1 [184 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgmp10 riscv64 2:6.2.1+dfsg-3ubuntu1 [245 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main riscv64 libunistring2 riscv64 1.0-1 [540 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main riscv64 libidn2-0 riscv64 2.3.2-2 [67.5 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main riscv64 libffi8 riscv64 3.4.2-4 [20.4 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main riscv64 libp11-kit0 riscv64 0.24.0-6 [203 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtasn1-6 riscv64 4.18.0-4 [38.9 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgnutls30 riscv64 3.7.3-4ubuntu1 [870 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main riscv64 systemd-sysv riscv64 249.11-0ubuntu1 [10.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main riscv64 systemd-timesyncd riscv64 249.11-0ubuntu1 [28.9 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main riscv64 libacl1 riscv64 2.3.1-1 [15.3 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main riscv64 libapparmor1 riscv64 3.0.4-2ubuntu2 [34.2 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main riscv64 libip4tc2 riscv64 1.8.7-1ubuntu4 [18.1 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main riscv64 libzstd1 riscv64 1.4.8+dfsg-3 [370 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkmod2 riscv64 29-1ubuntu1 [42.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmount1 riscv64 2.37.2-4ubuntu3 [157 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main riscv64 libseccomp2 riscv64 2.5.3-2ubuntu1 [45.1 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main riscv64 login riscv64 1:4.8.1-2ubuntu2 [184 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main riscv64 util-linux riscv64 2.37.2-4ubuntu3 [1124 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main riscv64 mount riscv64 2.37.2-4ubuntu3 [129 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main riscv64 systemd riscv64 249.11-0ubuntu1 [4145 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsystemd0 riscv64 249.11-0ubuntu1 [292 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxxhash0 riscv64 0.8.1-1 [31.9 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main riscv64 libapt-pkg6.0 riscv64 2.4.1 [916 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main riscv64 dpkg riscv64 1.21.1ubuntu1 [1214 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main riscv64 dash riscv64 0.5.11+git20210903+057cd650a4ed-3 [86.3 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main riscv64 grep riscv64 3.7-1 [151 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main riscv64 libncurses6 riscv64 6.3-2 [93.6 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main riscv64 libncursesw6 riscv64 6.3-2 [128 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtinfo6 riscv64 6.3-2 [96.1 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main riscv64 ncurses-bin riscv64 6.3-2 [176 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main riscv64 sed riscv64 4.8-1ubuntu1 [187 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main riscv64 init-system-helpers all 1.62 [38.5 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main riscv64 ncurses-base all 6.3-2 [20.1 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main riscv64 sysvinit-utils riscv64 3.01-1ubuntu1 [20.8 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpgv riscv64 2.2.27-3ubuntu1 [195 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main riscv64 apt riscv64 2.4.1 [1338 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsepol2 riscv64 3.3-1 [254 kB] Get:78 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsemanage-common all 3.3-1build2 [9874 B] Get:79 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsemanage2 riscv64 3.3-1build2 [83.9 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main riscv64 passwd riscv64 1:4.8.1-2ubuntu2 [736 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpam-modules-bin riscv64 1.4.0-11ubuntu1 [36.9 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpam-modules riscv64 1.4.0-11ubuntu1 [265 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main riscv64 logsave riscv64 1.46.5-2ubuntu1 [10.1 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main riscv64 libext2fs2 riscv64 1.46.5-2ubuntu1 [196 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main riscv64 e2fsprogs riscv64 1.46.5-2ubuntu1 [554 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main riscv64 init riscv64 1.62 [5414 B] Get:87 http://ftpmaster.internal/ubuntu jammy/main riscv64 libattr1 riscv64 1:2.5.1-1 [12.7 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcom-err2 riscv64 1.46.5-2ubuntu1 [8838 B] Get:89 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdebconfclient0 riscv64 0.261ubuntu1 [6560 B] Get:90 http://ftpmaster.internal/ubuntu jammy/main riscv64 libk5crypto3 riscv64 1.19.2-2 [102 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkrb5support0 riscv64 1.19.2-2 [30.7 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkrb5-3 riscv64 1.19.2-2 [337 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgssapi-krb5-2 riscv64 1.19.2-2 [127 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkeyutils1 riscv64 1.6.1-2ubuntu3 [9204 B] Get:95 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpam-runtime all 1.4.0-11ubuntu1 [40.2 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsmartcols1 riscv64 2.37.2-4ubuntu3 [103 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgomp1 riscv64 12-20220313-1ubuntu1 [111 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main riscv64 libatomic1 riscv64 12-20220313-1ubuntu1 [7864 B] Get:99 http://ftpmaster.internal/ubuntu jammy/main riscv64 libasan6 riscv64 11.2.0-18ubuntu1 [2106 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main riscv64 g++-11 riscv64 11.2.0-18ubuntu1 [9289 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main riscv64 gcc-11 riscv64 11.2.0-18ubuntu1 [15.9 MB] Get:102 http://ftpmaster.internal/ubuntu jammy/main riscv64 libstdc++-11-dev riscv64 11.2.0-18ubuntu1 [4757 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcc-11-dev riscv64 11.2.0-18ubuntu1 [2392 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main riscv64 libisl23 riscv64 0.24-2 [593 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmpc3 riscv64 1.2.1-1 [44.4 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcc1-0 riscv64 12-20220313-1ubuntu1 [43.6 kB] Get:107 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libctf0 riscv64 2.38-3ubuntu1 [97.9 kB] Get:108 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libctf-nobfd0 riscv64 2.38-3ubuntu1 [99.7 kB] Get:109 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.38-3ubuntu1 [927 kB] Get:110 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libbinutils riscv64 2.38-3ubuntu1 [492 kB] Get:111 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 binutils riscv64 2.38-3ubuntu1 [3096 B] Get:112 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 binutils-common riscv64 2.38-3ubuntu1 [213 kB] Get:113 http://ftpmaster.internal/ubuntu jammy/main riscv64 cpp-11 riscv64 11.2.0-18ubuntu1 [7984 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main riscv64 gcc-11-base riscv64 11.2.0-18ubuntu1 [21.1 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main riscv64 libprocps8 riscv64 2:3.3.17-6ubuntu2 [32.7 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main riscv64 libss2 riscv64 1.46.5-2ubuntu1 [10.7 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main riscv64 mawk riscv64 1.3.4.20200120-3 [95.0 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main riscv64 procps riscv64 2:3.3.17-6ubuntu2 [372 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main riscv64 sensible-utils all 0.0.17 [20.1 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main riscv64 usrmerge all 25ubuntu2 [54.7 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main riscv64 openssl riscv64 3.0.1-0ubuntu1 [1141 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main riscv64 ca-certificates all 20211016 [148 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main riscv64 readline-common all 8.1.2-1 [53.5 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main riscv64 libreadline8 riscv64 8.1.2-1 [130 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsqlite3-0 riscv64 3.37.2-2 [559 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main riscv64 tzdata all 2021e-1ubuntu1 [343 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main riscv64 dpkg-dev all 1.21.1ubuntu1 [922 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdpkg-perl all 1.21.1ubuntu1 [236 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main riscv64 make riscv64 4.3-4.1build1 [165 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main riscv64 lto-disabled-list all 23 [12.5 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfakeroot riscv64 1.28-1ubuntu1 [28.0 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main riscv64 fakeroot riscv64 1.28-1ubuntu1 [68.1 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpg riscv64 2.2.27-3ubuntu1 [488 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpgconf riscv64 2.2.27-3ubuntu1 [115 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpg-agent riscv64 2.2.27-3ubuntu1 [231 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main riscv64 lockfile-progs riscv64 0.1.19 [9330 B] Get:137 http://ftpmaster.internal/ubuntu jammy/main riscv64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23249356 riscv64 jammy-proposed -c chroot:build-PACKAGEBUILD-23249356 --arch=riscv64 --dist=jammy-proposed --nolog python-pybedtools_0.9.0-1build1.dsc Initiating build PACKAGEBUILD-23249356 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.11.0-1029-generic #32~20.04.1-Ubuntu SMP Fri Jan 28 13:38:22 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-072.buildd +==============================================================================+ | python-pybedtools 0.9.0-1build1 (riscv64) Thu, 17 Mar 2022 16:55:13 +0000 | +==============================================================================+ Package: python-pybedtools Version: 0.9.0-1build1 Source Version: 0.9.0-1build1 Distribution: jammy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23249356/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/python-pybedtools-ll62kg/resolver-XzZe24' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-pybedtools_0.9.0-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-pybedtools-ll62kg/python-pybedtools-0.9.0' with '<>' I: NOTICE: Log filtering will replace 'build/python-pybedtools-ll62kg' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [474 B] Get:5 copy:/<>/apt_archive ./ Packages [560 B] Fetched 1991 B in 0s (4019 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bedtools blt bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu70 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-brotli python3-certifi python3-chardet python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-fonttools python3-fs python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-toml python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zipp python3.10 python3.10-dev python3.10-minimal r-base-core sgml-base sphinx-common tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils xml-core zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit python3-build python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-venv python-attr-doc python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-nose-doc gfortran python-numpy-doc python-pandas-doc python3-statsmodels python-pil-doc python-psutil-doc subversion python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended texlive-plain-generic texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-bs4 python3-html5lib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables python3-olefile r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bedtools blt bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu70 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-brotli python3-certifi python3-chardet python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-fonttools python3-fs python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-toml python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zipp python3.10 python3.10-dev python3.10-minimal r-base-core sbuild-build-depends-main-dummy sgml-base sphinx-common tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils xml-core zip zlib1g-dev 0 upgraded, 203 newly installed, 0 to remove and 0 not upgraded. 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0.29.28-1ubuntu1 [2260 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdebhelper-perl all 13.6ubuntu1 [67.2 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtool all 2.4.6-15build1 [164 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:66 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:68 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdw1 riscv64 0.186-1 [228 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main riscv64 debugedit riscv64 1:5.0-4 [49.8 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main riscv64 dwz riscv64 0.14-1build1 [105 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main riscv64 gettext riscv64 0.21-4ubuntu3 [769 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main riscv64 debhelper all 13.6ubuntu1 [923 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-lib2to3 all 3.10.3-0ubuntu2 [76.1 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-distutils all 3.10.3-0ubuntu2 [138 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/universe riscv64 dh-python all 5.20220215 [104 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main riscv64 xml-core all 0.18+nmu1 [21.6 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main riscv64 docutils-common all 0.17.1+dfsg-2 [117 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main riscv64 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Get:128 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsm6 riscv64 2:1.2.3-1build1 [15.4 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjbig0 riscv64 2.1-3.1build2 [27.4 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main riscv64 libwebp7 riscv64 1.2.2-2 [162 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtiff5 riscv64 4.3.0-6 [165 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main riscv64 libwebpdemux2 riscv64 1.2.2-2 [9062 B] Get:133 http://ftpmaster.internal/ubuntu jammy/main riscv64 libwebpmux3 riscv64 1.2.2-2 [18.2 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxslt1.1 riscv64 1.1.34-4build1 [146 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxt6 riscv64 1:1.2.1-1 [150 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main riscv64 python-babel-localedata all 2.8.0+dfsg.1-7 [4982 kB] Get:137 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 python-matplotlib-data all 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jammy/main riscv64 python3-certifi all 2020.6.20-1 [150 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-chardet all 4.0.0-1 [98.0 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-cycler all 0.11.0-1 [8156 B] Get:150 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-six all 1.16.0-3 [12.5 kB] Get:151 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-dateutil all 2.8.1-6 [78.4 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:153 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-roman all 3.3-1 [10.6 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-docutils all 0.17.1+dfsg-2 [387 kB] Get:155 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-numpy riscv64 1:1.21.5-1build1 [3003 kB] Get:156 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 python3-scipy riscv64 1.8.0-1exp2build1 [14.6 MB] 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kB] Get:176 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-pil riscv64 9.0.1-1 [421 kB] Get:177 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-tk riscv64 3.10.3-0ubuntu2 [99.3 kB] Get:178 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-pil.imagetk riscv64 9.0.1-1 [9032 B] Get:179 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-pyparsing all 2.4.7-1 [61.4 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-packaging all 21.3-1 [30.7 kB] Get:181 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 python3-matplotlib riscv64 3.5.1-2build1 [5632 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-nose all 1.3.7-8 [117 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/main riscv64 sphinx-common all 4.3.2-1 [680 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-alabaster all 0.7.12-1 [17.8 kB] Get:185 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-pygments all 2.11.2+dfsg-2 [750 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-urllib3 all 1.26.5-1~exp1 [96.4 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-requests all 2.25.1+dfsg-2 [47.9 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-snowballstemmer all 2.2.0-1 [60.1 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-sphinx all 4.3.2-1 [541 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-numpydoc all 1.2-1 [43.5 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-pandas-lib riscv64 1.3.5+dfsg-3 [3613 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-pandas all 1.3.5+dfsg-3 [2680 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-pluggy all 0.13.0-7.1 [19.0 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-psutil riscv64 5.9.0-1 [156 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-py all 1.10.0-1 [71.9 kB] Get:196 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 python3-pysam riscv64 0.17.0+ds-2build1 [1649 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-toml all 0.10.2-1 [16.5 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-pytest all 6.2.5-1ubuntu2 [214 kB] Get:199 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-setuptools all 59.6.0-1.2 [339 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/main riscv64 zip riscv64 3.0-12build1 [168 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/main riscv64 unzip riscv64 6.0-26ubuntu2 [165 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/main riscv64 xdg-utils all 1.1.3-4.1ubuntu1 [62.2 kB] Get:203 http://ftpmaster.internal/ubuntu jammy/universe riscv64 r-base-core riscv64 4.1.2-1ubuntu2 [25.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 143 MB in 27s (5312 kB/s) Selecting previously unselected package libpython3.10-minimal:riscv64. 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No schema files found: doing nothing. Setting up fonts-lyx (2.3.6-1) ... Setting up unzip (6.0-26ubuntu2) ... Setting up libdebhelper-perl (13.6ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build4) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:riscv64 (1.43.0-1build2) ... Setting up libmagic1:riscv64 (1:5.41-2) ... Setting up libdeflate0:riscv64 (1.10-1ubuntu1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libqhull-r8.0:riscv64 (2020.2-4) ... Setting up file (1:5.41-2) ... Setting up libjbig0:riscv64 (2.1-3.1build2) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libsasl2-modules-db:riscv64 (2.1.27+dfsg2-3ubuntu1) ... Setting up unicode-data (14.0.0-1.1) ... Setting up zip (3.0-12build1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:riscv64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libexpat1-dev:riscv64 (2.4.7-1) ... Setting up libfreetype6:riscv64 (2.11.1+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libsigsegv2:riscv64 (2.13-1ubuntu2) ... Setting up libfribidi0:riscv64 (1.0.8-2ubuntu2) ... Setting up libimagequant0:riscv64 (2.17.0-1) ... Setting up libtcl8.6:riscv64 (8.6.12+dfsg-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:riscv64 (2.1.2-0ubuntu1) ... Setting up libsasl2-2:riscv64 (2.1.27+dfsg2-3ubuntu1) ... Setting up libssh-4:riscv64 (0.9.6-2) ... Setting up libgfortran5:riscv64 (12-20220313-1ubuntu1) ... Setting up libwebp7:riscv64 (1.2.2-2) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu8) ... Setting up libmd0:riscv64 (1.0.4-1) ... Setting up libuchardet0:riscv64 (0.0.7-1build1) ... Setting up libmpdec3:riscv64 (2.5.1-2build1) ... Setting up libopenjp2-7:riscv64 (2.4.0-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:riscv64 (2.7.4-1ubuntu3) ... Setting up libthai-data (0.1.29-1) ... Setting up sgml-base (1.30) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up python-matplotlib-data (3.5.1-2build1) ... Setting up libwebpmux3:riscv64 (1.2.2-2) ... Setting up libbsd0:riscv64 (0.11.5-1) ... Setting up libelf1:riscv64 (0.186-1) ... Setting up xdg-utils (1.1.3-4.1ubuntu1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up bedtools (2.30.0+dfsg-2) ... Setting up libjs-underscore (1.13.2~dfsg-2) ... Setting up libicu70:riscv64 (70.1-2) ... Setting up libjpeg8:riscv64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libpaper1:riscv64 (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:riscv64 (2:1.0.10-1build1) ... Setting up libdw1:riscv64 (0.186-1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu4) ... Setting up liblapack3:riscv64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libxcb1:riscv64 (1.14-3ubuntu2) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:riscv64 (1.14-3ubuntu2) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libwebpdemux2:riscv64 (1.2.2-2) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:riscv64 (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up libldap-2.5-0:riscv64 (2.5.11+dfsg-1~exp1ubuntu3) ... Setting up libpython3.10-stdlib:riscv64 (3.10.3-1) ... Setting up libthai0:riscv64 (0.1.29-1) ... Setting up libjs-jquery-ui (1.13.1+dfsg-1) ... Setting up libraqm0:riscv64 (0.7.0-4ubuntu1) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-8) ... Setting up xml-core (0.18+nmu1) ... Setting up debugedit (1:5.0-4) ... Setting up libcurl4:riscv64 (7.81.0-1) ... Setting up libx11-6:riscv64 (2:1.7.2-2) ... Setting up libtiff5:riscv64 (4.3.0-6) ... Setting up libfontconfig1:riscv64 (2.13.1-4.2ubuntu4) ... Setting up libsm6:riscv64 (2:1.2.3-1build1) ... Setting up libxml2:riscv64 (2.9.13+dfsg-1) ... Setting up libpython3-stdlib:riscv64 (3.10.1-0ubuntu2) ... Setting up liblbfgsb0:riscv64 (3.0+dfsg.3-10) ... Setting up automake (1:1.16.5-1.1ubuntu4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.10:riscv64 (3.10.3-1) ... Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up gettext (0.21-4ubuntu3) ... Setting up python3.10 (3.10.3-1) ... Setting up libxrender1:riscv64 (1:0.9.10-1build3) ... Setting up libpango-1.0-0:riscv64 (1.50.4+ds-1) ... Setting up libxext6:riscv64 (2:1.3.4-1) ... Setting up libcurl3-gnutls:riscv64 (7.81.0-1) ... Setting up python3 (3.10.1-0ubuntu2) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (2.0.1-2) ... Setting up libcairo2:riscv64 (1.16.0-5ubuntu2) ... Setting up python3-psutil (5.9.0-1) ... Setting up python3-tz (2021.3-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.16.0-3) ... Setting up dh-autoreconf (20) ... Setting up python3-roman (3.3-1) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.2.0-1) ... Setting up python3-brotli (1.0.9-2build4) ... Setting up sphinx-common (4.3.2-1) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.3.2-1) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.28-1ubuntu1) ... Setting up libpython3.10-dev:riscv64 (3.10.3-1) ... Setting up libxt6:riscv64 (1:1.2.1-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3.10-dev (3.10.3-1) ... Setting up libxslt1.1:riscv64 (1.1.34-4build1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up libxss1:riscv64 (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:riscv64 (1.50.4+ds-1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.10.3-0ubuntu2) ... Setting up python3-appdirs (1.4.4-2) ... Setting up libpangocairo-1.0-0:riscv64 (1.50.4+ds-1) ... Setting up python3-imagesize (1.3.0-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.3-0ubuntu2) ... Setting up dh-python (5.20220215) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.9-1) ... Setting up python3-attr (21.2.0-1) ... Setting up libxft2:riscv64 (2.3.3-0ubuntu4) ... Setting up libhts3:riscv64 (1.13+ds-2build1) ... Setting up python3-pysam (0.17.0+ds-2build1) ... Setting up libpython3-dev:riscv64 (3.10.1-0ubuntu2) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up python3-py (1.10.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (3.1.3+dfsg-1build2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-unicodedata2 (14.0.0+ds-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:riscv64 (8.6.12-1) ... Setting up python3-all (3.10.1-0ubuntu2) ... Setting up python3-yaml (5.4.1-1build1) ... Setting up debhelper (13.6ubuntu1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-nose (1.3.7-8) ... Setting up python3-fs (2.4.12-1) ... Setting up python3-jinja2 (3.0.3-1) ... Setting up python3-pygments (2.11.2+dfsg-2) ... Setting up python3-packaging (21.3-1) ... Setting up python3-chardet (4.0.0-1) ... Setting up libpython3-all-dev:riscv64 (3.10.1-0ubuntu2) ... Setting up python3-dev (3.10.1-0ubuntu2) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.1.2-1ubuntu2) ... Creating config file /etc/R/Renviron with new version Setting up python3-numpy (1:1.21.5-1build1) ... Setting up python3-lxml:riscv64 (4.8.0-1build1) ... Setting up python3-all-dev (3.10.1-0ubuntu2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build1) ... Setting up python3-scipy (1.8.0-1exp2build1) ... Setting up python3-importlib-metadata (4.6.4-1) ... Setting up blt (2.5.3+dfsg-4.1build1) ... Setting up python3-pandas-lib:riscv64 (1.3.5+dfsg-3) ... Setting up python3-tk:riscv64 (3.10.3-0ubuntu2) ... Setting up python3-pandas (1.3.5+dfsg-3) ... Setting up python3-pluggy (0.13.0-7.1) ... Setting up python3-pytest (6.2.5-1ubuntu2) ... Setting up python3-pil.imagetk:riscv64 (9.0.1-1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-fonttools (4.29.1-2build1) ... Setting up python3-pil:riscv64 (9.0.1-1) ... Setting up python3-matplotlib (3.5.1-2build1) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.17.1+dfsg-2) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.17.1+dfsg-2) ... Setting up python3-sphinx (4.3.2-1) ... Setting up python3-numpydoc (1.2-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.11.0-1029-generic #32~20.04.1-Ubuntu SMP Fri Jan 28 13:38:22 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.38-3ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-18ubuntu1 gcc-11_11.2.0-18ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.2.0-18ubuntu1 libstdc++6_12-20220313-1ubuntu1 linux-libc-dev_5.15.0-23.23 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.4.1 autoconf_2.71-2 automake_1:1.16.5-1.1ubuntu4 autopoint_0.21-4ubuntu3 autotools-dev_20220109.1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-6ubuntu1 bedtools_2.30.0+dfsg-2 binutils_2.38-3ubuntu1 binutils-common_2.38-3ubuntu1 binutils-riscv64-linux-gnu_2.38-3ubuntu1 blt_2.5.3+dfsg-4.1build1 bsdextrautils_2.37.2-4ubuntu3 bsdutils_1:2.37.2-4ubuntu3 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-18ubuntu1 cython3_0.29.28-1ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79ubuntu1 debhelper_13.6ubuntu1 debianutils_5.5-1ubuntu1 debugedit_1:5.0-4 dh-autoreconf_20 dh-python_5.20220215 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu1 docutils-common_0.17.1+dfsg-2 dpkg_1.21.1ubuntu1 dpkg-dev_1.21.1ubuntu1 dwz_0.14-1build1 e2fsprogs_1.46.5-2ubuntu1 fakeroot_1.28-1ubuntu1 file_1:5.41-2 findutils_4.8.0-1ubuntu2 fontconfig_2.13.1-4.2ubuntu4 fontconfig-config_2.13.1-4.2ubuntu4 fonts-dejavu-core_2.37-2build1 fonts-lyx_2.3.6-1 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-18ubuntu1 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Uploaders: Michael R. Crusoe , Steffen Moeller Homepage: https://daler.github.io/pybedtools/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pybedtools Vcs-Git: https://salsa.debian.org/med-team/python-pybedtools.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev Package-List: pybedtools-bin deb python optional arch=all python-pybedtools-doc deb doc optional arch=all python3-pybedtools deb python optional arch=any Checksums-Sha1: ca9bfd341bff054241f8ef7bf2d49ca09eadfa43 12497249 python-pybedtools_0.9.0.orig.tar.gz 6800e0826687e5e0373ab960f81900c64b9384f9 29156 python-pybedtools_0.9.0-1build1.debian.tar.xz Checksums-Sha256: d0ea55325ba4cb5bd6da9d497f27f6af5aa7ae65f5b97053514ab05ff3cd532d 12497249 python-pybedtools_0.9.0.orig.tar.gz 93362bfc379c7739cb2b23a826fde3dce7c8d93a4304b4103cbf5af608d9d88c 29156 python-pybedtools_0.9.0-1build1.debian.tar.xz Files: b7ef52fdb2fde7ec2ed3bf7e7ae181e3 12497249 python-pybedtools_0.9.0.orig.tar.gz 0e488366d48f58092d6ef4a04692b651 29156 python-pybedtools_0.9.0-1build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmIyWrkACgkQr8/sjmac 4cK/nRAAtU0tAK0Hi2g+dwomlfFwBuMqFVdEIO4jrFWMX6P6y4aNPqUk9Bm/yUMu +Z5r7tqVMS787ZoyVl/hhAjx54SyVmOXYbXeNoQuy5S72+RkB6RSrV44bP4CTStk QV6ydkLyT5QASJWk5BNTX6N/BqZMk+RNy/zvlZB3uaV61tj0Knx3gTH0Aazu99ug N8vUhzH1GKqZgucta1ckM0iA5b7QL8Y341KVA64PztGxu+kr2PvkkSYyKk0OhJpC hrCqxP7ffLi3KDaXXrqO+FTlDCA8CZsw2cHFzr1kSEts7Xkd6Iksa/lnTD+QVDHZ e5wW1VawcXrrTUXJyTH8NZuq824fJ9QrYGQPHVU0sLecufw1k/B02s5nWYP3t7IA x4KQ2iDDRWBkQLY/QXSjYGQR/VbfYZ+EyW3W+Ef5SnMS7m2xYYTI30Hkl/xfFBmu ZPBLuiHmuLNVU48NJxVRQHnmBtOwYbKYs3ZKFi0lplqRk3dtfMvKh3a2cl9J2JCj jgcve+q175HO1d79b3tkIZfp9727804PzKVmqnnIHxWr7MqNK5Rvcco04w6N4iPu GcXmeUJA0APOMVcbu5xWIf7Q1+MvCLaJZ5YprElxy2ZlyjfejAcHynkDKlOCXO2E qsL9rz5kYzlwBYNuTJr0ZoVYXSHUBYddvYFUcmyVnUSlBUwbPME= =sV8G -----END PGP SIGNATURE----- gpgv: Signature made Wed Mar 16 21:46:33 2022 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./python-pybedtools_0.9.0-1build1.dsc dpkg-source: info: extracting python-pybedtools in /<> dpkg-source: info: unpacking python-pybedtools_0.9.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.9.0-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch dpkg-source: info: applying add_missing_shebang.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23249356 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23249356 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23249356 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.9.0-1build1 dpkg-buildpackage: info: source distribution jammy dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm # dh_auto_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' python3 setup.py cythonize running cythonize /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx dh_auto_build I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/settings.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/stats.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/logger.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/paths.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/genomepy_integration.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_pathlib.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_1.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/_Window.pyx -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/cbedtools.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/featurefuncs.pyx -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/test/data/hg19.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.vcf.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.out.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/genome.fa -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.cram -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/gchart-expected.png -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test running build_ext building 'pybedtools.cbedtools' extension creating build creating build/temp.linux-riscv64-3.10 creating build/temp.linux-riscv64-3.10/pybedtools creating build/temp.linux-riscv64-3.10/pybedtools/include riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/cbedtools.cpp -o build/temp.linux-riscv64-3.10/pybedtools/cbedtools.o In file included from pybedtools/cbedtools.cpp:737: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-3.10/pybedtools/cbedtools.o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-riscv64-linux-gnu.so building 'pybedtools.featurefuncs' extension riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/featurefuncs.cpp -o build/temp.linux-riscv64-3.10/pybedtools/featurefuncs.o In file included from pybedtools/featurefuncs.cpp:737: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-3.10/pybedtools/featurefuncs.o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-riscv64-linux-gnu.so python3 setup.py develop --user running develop /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:158: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. warnings.warn( /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/cbedtools.cpp -o build/temp.linux-riscv64-3.10/pybedtools/cbedtools.o In file included from pybedtools/cbedtools.cpp:737: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-3.10/pybedtools/cbedtools.o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/pybedtools/cbedtools.cpython-310-riscv64-linux-gnu.so building 'pybedtools.featurefuncs' extension riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/featurefuncs.cpp -o build/temp.linux-riscv64-3.10/pybedtools/featurefuncs.o In file included from pybedtools/featurefuncs.cpp:737: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/include/bedFile.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/include/fileType.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o riscv64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.10 -I/usr/local/include/python3.10 -c pybedtools/include/gzstream.cpp -o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-3.10/pybedtools/featurefuncs.o build/temp.linux-riscv64-3.10/pybedtools/include/bedFile.o build/temp.linux-riscv64-3.10/pybedtools/include/fileType.o build/temp.linux-riscv64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/pybedtools/featurefuncs.cpython-310-riscv64-linux-gnu.so Creating /<>/fakehome/.local/lib/python3.10/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.9.0 to easy-install.pth file Installed /<> Processing dependencies for pybedtools==0.9.0 Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.17.0 Best match: pysam 0.17.0 Adding pysam 0.17.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.9.0 python3 setup.py build_sphinx running build_sphinx Running Sphinx v4.3.2 making output directory... done [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst [autosummary] generating autosummary for: /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /<>/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /<>/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /<>/docs/source/pybedtools.featurefuncs.add_color.rst, /<>/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /<>/docs/source/pybedtools.featurefuncs.extend_fields.rst, /<>/docs/source/pybedtools.featurefuncs.five_prime.rst, /<>/docs/source/pybedtools.featurefuncs.greater_than.rst, /<>/docs/source/pybedtools.featurefuncs.less_than.rst, /<>/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /<>/docs/source/pybedtools.featurefuncs.three_prime.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: [new config] 157 added, 0 changed, 0 removed reading sources... 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[100%] tutorial-contents /<>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history..decorated:9: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history..decorated:28: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history..decorated:20: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history..decorated:16: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/default-arguments.rst:35: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/topical-design-principles.rst:120: WARNING: unknown option: mergeBed -i /<>/docs/source/topical-design-principles.rst:127: WARNING: unknown option: -i generating indices... genindex py-modindex done highlighting module code... [ 7%] pybedtools highlighting module code... [ 15%] pybedtools.bedtool highlighting module code... [ 23%] pybedtools.cbedtools highlighting module code... [ 30%] pybedtools.contrib.bigbed highlighting module code... [ 38%] pybedtools.contrib.bigwig highlighting module code... [ 46%] pybedtools.contrib.intersection_matrix highlighting module code... [ 53%] pybedtools.contrib.long_range_interaction highlighting module code... [ 61%] pybedtools.contrib.plotting highlighting module code... [ 69%] pybedtools.contrib.venn_maker highlighting module code... [ 76%] pybedtools.featurefuncs highlighting module code... [ 84%] pybedtools.filenames highlighting module code... [ 92%] pybedtools.helpers highlighting module code... [100%] pybedtools.parallel writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 9 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3 setup.py install --root /<>/debian/python3-pybedtools running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/debian/python3-pybedtools creating /<>/debian/python3-pybedtools/usr creating /<>/debian/python3-pybedtools/usr/lib creating /<>/debian/python3-pybedtools/usr/lib/python3.10 creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/version.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pxd -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/filenames.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/settings.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/bedtool.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/parallel.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/genome_registry.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-riscv64-linux-gnu.so -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/stats.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/genomepy_integration.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_iter.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_len_leak.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/tfuncs.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/regression_tests.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg19.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/m1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/d.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/v.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/164.gtf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.links.html -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/reads.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.igv_script -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/genome.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/exons.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/y.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.cram -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.fastq -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/c.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_pathlib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_contrib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cases.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/mpl-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_1.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/gchart-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_issues.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/plotting.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigwig.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigbed.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-riscv64-linux-gnu.so -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/logger.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/_Window.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/paths.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/version.py to version.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/filenames.py to filenames.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/settings.py to settings.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/bedtool.py to bedtool.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/parallel.py to parallel.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/stats.py to stats.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_1.py to test_1.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/helpers.py to helpers.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/logger.py to logger.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/paths.py to paths.cpython-310.pyc running install_egg_info Copying pybedtools.egg-info to /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools-0.9.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/python3-pybedtools/usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-310-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 cfc2e2d8d267d47292d4bb6a8d8efaca139a691d debugedit: debian/python3-pybedtools/usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-310-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5f1184422314dc3b187cf7589e10f03829522df7 dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-pybedtools-dbgsym (in debian/.debhelper/python3-pybedtools/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python3-pybedtools (in debian/python3-pybedtools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-pybedtools/dbgsym-root/DEBIAN/control, package python3-pybedtools-dbgsym, directory debian/.debhelper/python3-pybedtools/dbgsym-root dpkg-deb: building package 'python3-pybedtools-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-pybedtools/python3-pybedtools-dbgsym_0.9.0-1build1_riscv64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " Renaming python3-pybedtools-dbgsym_0.9.0-1build1_riscv64.deb to python3-pybedtools-dbgsym_0.9.0-1build1_riscv64.ddeb pkgstripfiles: processing control file: debian/python3-pybedtools/DEBIAN/control, package python3-pybedtools, directory debian/python3-pybedtools pkgstripfiles: Truncating usr/share/doc/python3-pybedtools/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package python3-pybedtools ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value oo pkgstripfiles: PNG optimization (2/0) for package python3-pybedtools took 89 s dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.9.0-1build1_riscv64.deb'. dpkg-genbuildinfo --build=any -O../python-pybedtools_0.9.0-1build1_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../python-pybedtools_0.9.0-1build1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) 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3.6.0+dfsg+~3.5.13-1), libjs-jquery-ui (= 1.13.1+dfsg-1), libjs-sphinxdoc (= 4.3.2-1), libjs-underscore (= 1.13.2~dfsg-2), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-2ubuntu3), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack3 (= 3.10.0-2ubuntu1), liblbfgsb0 (= 3.0+dfsg.3-10), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.11+dfsg-1~exp1ubuntu3), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmount1 (= 2.37.2-4ubuntu3), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libncursesw6 (= 6.3-2), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build2), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libopenjp2-7 (= 2.4.0-6), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11ubuntu1), libpam-modules-bin (= 1.4.0-11ubuntu1), libpam-runtime (= 1.4.0-11ubuntu1), libpam0g (= 1.4.0-11ubuntu1), libpango-1.0-0 (= 1.50.4+ds-1), 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1:1.2.3-1build1), libxt6 (= 1:1.2.1-1), libyaml-0-2 (= 0.2.2-1build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-23.23), login (= 1:4.8.1-2ubuntu2), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 23), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4.1build1), man-db (= 2.10.1-1), mawk (= 1.3.4.20200120-3), media-types (= 6.0.0), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), openssl (= 3.0.1-0ubuntu1), patch (= 2.7.6-7build1), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), python-babel-localedata (= 2.8.0+dfsg.1-7), python-matplotlib-data (= 3.5.1-2build1), python3 (= 3.10.1-0ubuntu2), python3-alabaster (= 0.7.12-1), python3-all (= 3.10.1-0ubuntu2), python3-all-dev (= 3.10.1-0ubuntu2), python3-appdirs (= 1.4.4-2), python3-attr (= 21.2.0-1), python3-babel (= 2.8.0+dfsg.1-7), python3-brotli (= 1.0.9-2build4), python3-certifi (= 2020.6.20-1), python3-chardet (= 4.0.0-1), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.10.1-0ubuntu2), python3-distutils (= 3.10.3-0ubuntu2), python3-docutils (= 0.17.1+dfsg-2), python3-fonttools (= 4.29.1-2build1), python3-fs (= 2.4.12-1), python3-idna (= 3.3-1), python3-imagesize (= 1.3.0-1), python3-importlib-metadata (= 4.6.4-1), python3-iniconfig (= 1.1.1-2), python3-jinja2 (= 3.0.3-1), python3-kiwisolver (= 1.3.2-1), python3-lib2to3 (= 3.10.3-0ubuntu2), python3-lxml (= 4.8.0-1build1), python3-lz4 (= 3.1.3+dfsg-1build2), python3-markupsafe (= 2.0.1-2), python3-matplotlib (= 3.5.1-2build1), python3-minimal (= 3.10.1-0ubuntu2), python3-more-itertools (= 8.10.0-2), python3-mpmath (= 1.2.1-2), python3-nose (= 1.3.7-8), python3-numpy (= 1:1.21.5-1build1), python3-numpydoc (= 1.2-1), python3-packaging (= 21.3-1), python3-pandas (= 1.3.5+dfsg-3), python3-pandas-lib (= 1.3.5+dfsg-3), python3-pil (= 9.0.1-1), python3-pil.imagetk (= 9.0.1-1), python3-pkg-resources (= 59.6.0-1.2), python3-pluggy (= 0.13.0-7.1), python3-psutil (= 5.9.0-1), python3-py (= 1.10.0-1), python3-pygments (= 2.11.2+dfsg-2), python3-pyparsing (= 2.4.7-1), python3-pysam (= 0.17.0+ds-2build1), python3-pytest (= 6.2.5-1ubuntu2), python3-requests (= 2.25.1+dfsg-2), python3-roman (= 3.3-1), python3-scipy (= 1.8.0-1exp2build1), python3-setuptools (= 59.6.0-1.2), python3-six (= 1.16.0-3), python3-snowballstemmer (= 2.2.0-1), python3-sphinx (= 4.3.2-1), python3-sympy (= 1.9-1), python3-tk (= 3.10.3-0ubuntu2), python3-toml (= 0.10.2-1), python3-tz (= 2021.3-1), python3-ufolib2 (= 0.13.1+dfsg1-1), python3-unicodedata2 (= 14.0.0+ds-8), python3-urllib3 (= 1.26.5-1~exp1), python3-yaml (= 5.4.1-1build1), python3-zipp (= 1.0.0-3), python3.10 (= 3.10.3-1), python3.10-dev (= 3.10.3-1), python3.10-minimal (= 3.10.3-1), r-base-core (= 4.1.2-1ubuntu2), readline-common (= 8.1.2-1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1ubuntu1), sensible-utils (= 0.0.17), sgml-base (= 1.30), sphinx-common (= 4.3.2-1), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build2), tk8.6-blt2.5 (= 2.5.3+dfsg-4.1build1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unicode-data (= 14.0.0-1.1), unzip (= 6.0-26ubuntu2), util-linux (= 2.37.2-4ubuntu3), x11-common (= 1:7.7+23ubuntu1), xdg-utils (= 1.1.3-4.1ubuntu1), xml-core (= 0.18+nmu1), xz-utils (= 5.2.5-2build1), zip (= 3.0-12build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu8), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu8) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1647467192" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-pybedtools_0.9.0-1build1_riscv64.deb -------------------------------------------- new Debian package, version 2.0. size 12251756 bytes: control archive=4495 bytes. 873 bytes, 18 lines control 12490 bytes, 128 lines md5sums 277 bytes, 12 lines * postinst #!/bin/sh 426 bytes, 12 lines * prerm #!/bin/sh Package: python3-pybedtools Source: python-pybedtools Version: 0.9.0-1build1 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 17023 Depends: python3 (<< 3.11), python3 (>= 3.10~), python3-pysam, python3-six, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Suggests: python-pybedtools-doc Section: python Priority: optional Homepage: https://daler.github.io/pybedtools/ Description: Python 3 wrapper around BEDTools for bioinformatics work The BEDTools suite of programs is widely used for genomic interval manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python. . This is the Python 3 version. drwxr-xr-x root/root 0 2022-03-16 21:46 ./ drwxr-xr-x root/root 0 2022-03-16 21:46 ./usr/ drwxr-xr-x root/root 0 2022-03-16 21:46 ./usr/lib/ drwxr-xr-x root/root 0 2022-03-16 21:46 ./usr/lib/python3/ drwxr-xr-x root/root 0 2022-03-16 21:46 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2022-03-16 21:46 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/ -rw-r--r-- root/root 3074 2022-03-16 21:46 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2022-03-16 21:46 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2022-03-16 21:46 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/not-zip-safe -rw-r--r-- root/root 0 2022-03-16 21:46 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/requires.txt -rw-r--r-- root/root 11 2022-03-16 21:46 ./usr/lib/python3/dist-packages/pybedtools-0.9.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2022-03-16 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python-pybedtools Package-Time: 2503 Source-Version: 0.9.0-1build1 Space: 98104 Status: successful Version: 0.9.0-1build1 -------------------------------------------------------------------------------- Finished at 2022-03-17T17:36:56Z Build needed 00:41:43, 98104k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23249356 Scanning for processes to kill in build PACKAGEBUILD-23249356 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23249356 Stopping target for build PACKAGEBUILD-23249356 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23249356 Removing build PACKAGEBUILD-23249356