https://launchpad.net/ubuntu/+source/python-pymummer/0.10.3-2/+build/16244751 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-011 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 Jan 17:16:09 ntpdate[1826]: adjust time server 10.211.37.1 offset 0.002487 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16244751 /home/buildd/filecache-default/020b0022f770b890c357907d03d82568c584d50e Creating target for build PACKAGEBUILD-16244751 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16244751 Starting target for build PACKAGEBUILD-16244751 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16244751 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16244751 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16244751 Updating target for build PACKAGEBUILD-16244751 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1007 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [8940 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5169 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [115 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [50.2 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [452 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [232 kB] Fetched 16.9 MB in 8s (2212 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-x86-64-linux-gnu cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 liblz4-1 libmpx2 libpng16-16 libquadmath0 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sed tar tzdata 49 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB of archives. After this operation, 123 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 tar amd64 1.30+dfsg-4 [242 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu2 [1101 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dash amd64 0.5.10.2-4 [85.8 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.7-1 [190 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgnutls30 amd64 3.6.5-2ubuntu1 [759 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libubsan1 amd64 8.2.0-13ubuntu1 [121 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libtsan0 amd64 8.2.0-13ubuntu1 [288 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8-base amd64 8.2.0-13ubuntu1 [18.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc1 amd64 1:8.2.0-13ubuntu1 [40.8 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgomp1 amd64 8.2.0-13ubuntu1 [76.5 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libitm1 amd64 8.2.0-13ubuntu1 [28.1 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libatomic1 amd64 8.2.0-13ubuntu1 [9056 B] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libasan5 amd64 8.2.0-13ubuntu1 [364 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblsan0 amd64 8.2.0-13ubuntu1 [132 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libmpx2 amd64 8.2.0-13ubuntu1 [11.7 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libquadmath0 amd64 8.2.0-13ubuntu1 [134 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 cpp-8 amd64 8.2.0-13ubuntu1 [7221 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcc1-0 amd64 8.2.0-13ubuntu1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 g++-8 amd64 8.2.0-13ubuntu1 [8113 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8 amd64 8.2.0-13ubuntu1 [8004 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc-8-dev amd64 8.2.0-13ubuntu1 [2304 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++-8-dev amd64 8.2.0-13ubuntu1 [1538 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++6 amd64 8.2.0-13ubuntu1 [398 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libbinutils amd64 2.31.1-11ubuntu1 [484 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-common amd64 2.31.1-11ubuntu1 [194 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils amd64 2.31.1-11ubuntu1 [3396 B] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-11ubuntu1 [1829 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblz4-1 amd64 1.8.3-1ubuntu1 [71.7 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 libzstd1 amd64 1.3.8+dfsg-3 [226 kB] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libapt-pkg5.0 amd64 1.8.0~alpha3 [816 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 apt amd64 1.8.0~alpha3 [1165 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libext2fs2 amd64 1.44.5-1 [159 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 e2fsprogs amd64 1.44.5-1 [514 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 init amd64 1.56+nmu1 [6080 B] Get:36 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgpg-error0 amd64 1.33-3 [57.4 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage-common all 2.8-2 [7016 B] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage1 amd64 2.8-2 [85.2 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 libcom-err2 amd64 1.44.5-1 [9372 B] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libss2 amd64 1.44.5-1 [11.1 kB] Get:41 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-1 [530 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018i-1 [189 kB] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpng16-16 amd64 1.6.36-2 [179 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 e2fslibs amd64 1.44.5-1 [2704 B] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libassuan0 amd64 2.5.2-1 [35.1 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 libcomerr2 amd64 1.44.5-1 [2700 B] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-9.10 [1041 kB] 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Current default time zone: 'Etc/UTC' Local time is now: Mon Jan 7 17:16:49 UTC 2019. Universal Time is now: Mon Jan 7 17:16:49 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up libtsan0:amd64 (8.2.0-13ubuntu1) ... Setting up linux-libc-dev:amd64 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up liblsan0:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-common:amd64 (2.31.1-11ubuntu1) ... Setting up libmpx2:amd64 (8.2.0-13ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:amd64 (1.44.5-1) ... Setting up libasan5:amd64 (8.2.0-13ubuntu1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libitm1:amd64 (8.2.0-13ubuntu1) ... Setting up libubsan1:amd64 (8.2.0-13ubuntu1) ... Setting up libbinutils:amd64 (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16244751 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-16244751 --arch=amd64 --dist=disco-proposed --nolog -A python-pymummer_0.10.3-2.dsc Initiating build PACKAGEBUILD-16244751 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-011.buildd +==============================================================================+ | python-pymummer 0.10.3-2 (amd64) 07 Jan 2019 17:16 | +==============================================================================+ Package: python-pymummer Version: 0.10.3-2 Source Version: 0.10.3-2 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/python-pymummer-AsdxPh/python-pymummer-0.10.3' with '<>' I: NOTICE: Log filtering will replace 'build/python-pymummer-AsdxPh' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16244751/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-pymummer_0.10.3-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-m6UoQb/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-m6UoQb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-m6UoQb/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-m6UoQb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-m6UoQb/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-m6UoQb/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (144 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-m6UoQb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-python, python3-all, python3-setuptools, fastaq (>= 3.10.0), mummer, python3-nose Filtered Build-Depends: debhelper (>= 11~), dh-python, python3-all, python3-setuptools, fastaq (>= 3.10.0), mummer, python3-nose dpkg-deb: building package 'sbuild-build-depends-python-pymummer-dummy' in '/<>/resolver-NghvYv/apt_archive/sbuild-build-depends-python-pymummer-dummy.deb'. Ign:1 copy:/<>/resolver-NghvYv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NghvYv/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-NghvYv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NghvYv/apt_archive ./ Sources [255 B] Get:5 copy:/<>/resolver-NghvYv/apt_archive ./ Packages [575 B] Fetched 2949 B in 0s (218 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install python-pymummer build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz fastaq file gawk gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts2 libhx509-5-heimdal libicu63 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db mime-support mummer po-debconf python3 python3-all python3-distutils python3-lib2to3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.7 python3.7-minimal samtools Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-nose-doc python-setuptools-doc python3.7-venv python3.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python cwltool The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz fastaq file gawk gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts2 libhx509-5-heimdal libicu63 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db mime-support mummer po-debconf python3 python3-all python3-distutils python3-lib2to3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.7 python3.7-minimal samtools sbuild-build-depends-python-pymummer-dummy 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 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Setting up libglib2.0-0:amd64 (2.58.1-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up gawk (1:4.2.1+dfsg-1) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up libcroco3:amd64 (0.6.12-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libkeyutils1:amd64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libk5crypto3:amd64 (1.16.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.2-1) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-9) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up groff-base (1.22.4-2) ... Setting up mummer (3.23+dfsg-4) ... Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up python3.7 (3.7.2-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:amd64 (3.7.1-1ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up python3-pkg-resources (40.6.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up python3-nose (1.3.7-4) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up python3-lib2to3 (3.7.2-2) ... Setting up python3-distutils (3.7.2-2) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-5ubuntu3) ... Setting up python3-setuptools (40.6.2-1) ... Setting up dh-python (3.20180927ubuntu2) ... Setting up libcurl3-gnutls:amd64 (7.61.0-1ubuntu2.2) ... Setting up python3-all (3.7.1-1ubuntu1) ... Setting up libhts2:amd64 (1.9-8) ... Setting up samtools (1.9-2) ... Setting up fastaq (3.17.0-2) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up sbuild-build-depends-python-pymummer-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc-8_8.2.0-13ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-x86-64-linux-gnu_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-13ubuntu1 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927ubuntu2 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fastaq_3.17.0-2 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-13ubuntu1 gawk_1:4.2.1+dfsg-1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-13ubuntu1 gcc-8-base_8.2.0-13ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-3 groff-base_1.22.4-2 gzip_1.6-5ubuntu2 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-13ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2.1 libassuan0_2.5.2-1 libatomic1_8.2.0-13ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-11ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-13ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl3-gnutls_7.61.0-1ubuntu2.2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-13ubuntu1 libgcc1_1:8.2.0-13ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-13ubuntu1 libgpg-error0_1.33-3 libgssapi-krb5-2_1.16.2-1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4.1~rc1-1 libhts2_1.9-8 libhx509-5-heimdal_7.5.0+dfsg-2.1 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-13ubuntu1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.16.2-1 libkrb5support0_1.16.2-1 libldap-2.4-2_2.4.46+dfsg-5ubuntu3 libldap-common_2.4.46+dfsg-5ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-13ubuntu1 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libmpx2_8.2.0-13ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libpython3-stdlib_3.7.1-1ubuntu1 libpython3.7-minimal_3.7.2-1 libpython3.7-stdlib_3.7.2-1 libquadmath0_8.2.0-13ubuntu1 libreadline7_7.0-5 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-13ubuntu1 libubsan1_8.2.0-13ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwind0-heimdal_7.5.0+dfsg-2.1 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 mummer_3.23+dfsg-4 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python3_3.7.1-1ubuntu1 python3-all_3.7.1-1ubuntu1 python3-distutils_3.7.2-2 python3-lib2to3_3.7.2-2 python3-minimal_3.7.1-1ubuntu1 python3-nose_1.3.7-4 python3-pkg-resources_40.6.2-1 python3-setuptools_40.6.2-1 python3.7_3.7.2-1 python3.7-minimal_3.7.2-1 readline-common_7.0-5 samtools_1.9-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pymummer-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jan 7 08:42:14 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pymummer_0.10.3-2.dsc dpkg-source: info: extracting python-pymummer in python-pymummer-0.10.3 dpkg-source: info: unpacking python-pymummer_0.10.3.orig.tar.gz dpkg-source: info: unpacking python-pymummer_0.10.3-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16244751 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16244751 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16244751 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-pymummer dpkg-buildpackage: info: source version 0.10.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running clean removing '/<>/.pybuild/cpython3_3.7_pymummer/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build LC_ALL=C.UTF-8 dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running build running build_py creating /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/coords_file.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/nucmer.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/alignment.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/variant.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/snp_file.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/syscall.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/snp.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer copying pymummer/__init__.py -> /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer debian/rules override_dh_auto_test make[1]: Entering directory '/<>' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} setup.py test" \ dh_auto_test I: pybuild base:217: python3.7 setup.py test Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running test running egg_info creating pymummer.egg-info writing pymummer.egg-info/PKG-INFO writing dependency_links to pymummer.egg-info/dependency_links.txt writing requirements to pymummer.egg-info/requires.txt writing top-level names to pymummer.egg-info/top_level.txt writing manifest file 'pymummer.egg-info/SOURCES.txt' reading manifest file 'pymummer.egg-info/SOURCES.txt' writing manifest file 'pymummer.egg-info/SOURCES.txt' running build_ext test_init_nucmer (alignment_test.TestNucmer) test __init__ nucmer ... ok test_init_promer (alignment_test.TestNucmer) test __init__ promer ... ok test_intersects_variant (alignment_test.TestNucmer) Test intersects_variant ... ok test_is_self_hit (alignment_test.TestNucmer) Test is_self_hit ... ok test_on_same_strand (alignment_test.TestNucmer) test on_same_strand ... ok test_qry_coords (alignment_test.TestNucmer) Test qry_coords ... ok test_qry_coords_from_ref_coord_test_bad_ref_coord (alignment_test.TestNucmer) Test qry_coords_from_ref_coord with bad ref coords ... ok test_qry_coords_from_ref_coord_test_different_strand (alignment_test.TestNucmer) Test qry_coords_from_ref_coord on different strand ... ok test_qry_coords_from_ref_coord_test_same_strand (alignment_test.TestNucmer) Test qry_coords_from_ref_coord on same strand ... ok test_qry_coords_from_ref_coord_when_variant_not_in_nucmer_match (alignment_test.TestNucmer) Test ref_coords_from_qry_coord when variant not in nucmer match ... ok test_ref_coords (alignment_test.TestNucmer) Test ref_coords ... ok test_ref_coords_from_qry_coord_test_same_strand (alignment_test.TestNucmer) Test ref_coords_from_qry_coord on same strand ... ok test_ref_coords_from_qry_coord_when_variant_not_in_nucmer_match (alignment_test.TestNucmer) Test ref_coords_from_qry_coord when variant not in nucmer match ... ok test_reverse_query (alignment_test.TestNucmer) Test reverse_query ... ok test_reverse_reference (alignment_test.TestNucmer) Test reverse_reference ... ok test_str (alignment_test.TestNucmer) Test __str__ ... ok test_swap (alignment_test.TestNucmer) test swap ... ok test_to_msp_crunch (alignment_test.TestNucmer) Test to_msp_crunch ... ok test_convert_to_msp_crunch_no_offset (coords_file_test.TestCoordsFile) Test convert_to_msp_crunch with no offsets ... ok test_convert_to_msp_crunch_with_offset (coords_file_test.TestCoordsFile) Test convert_to_msp_crunch with offsets ... ok test_coords_file (coords_file_test.TestCoordsFile) test coords_file ... ok test_delta_filter_command (nucmer_test.TestRunner) test _delta_filter_command ... ok test_nucmer_command (nucmer_test.TestRunner) test _nucmer_command ... ok test_run_nucmer (nucmer_test.TestRunner) test run_nucmer ... ok test_show_coords_command (nucmer_test.TestRunner) test _show_coords_command ... ok test_show_snps_command (nucmer_test.TestRunner) test _show_snps_command ... ok test_write_script_no_snps (nucmer_test.TestRunner) test _write_script no snps ... ok test_write_script_with_snps (nucmer_test.TestRunner) test _write_script with snps ... ok test_get_all_variants (snp_file_test.TestUtils) Test load all variants from file ... ok test_snp_file (snp_file_test.TestUtils) test coords_file ... ok test_str_no_c_option (snp_test.TestSnp) Test __str__ with format with no -C option ... ok test_str_with_c_option (snp_test.TestSnp) Test __str__ with format with -C option ... ok test_run_fail (syscall_test.TestSyscall) Test that run raises error when command fails ... The following command failed with exit code 127 notacommandandthrowerror The output was: /bin/sh: 1: notacommandandthrowerror: not found ok test_run_ok (syscall_test.TestSyscall) Test run is ok on command that works ... ok test_init (variant_test.TestVariant) Test init gets correct variant type ... ok test_update_indel_deletion (variant_test.TestVariant) Test update_indel extends deletions correctly ... ok test_update_indel_insertion (variant_test.TestVariant) Test update_indel extends insertions correctly ... ok test_update_indel_no_change (variant_test.TestVariant) Test update_indel does nothing in the right cases ... ok ---------------------------------------------------------------------- Ran 38 tests in 0.189s OK make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-pymummer Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running install running build running build_py running install_lib creating /<>/debian/python3-pymummer/usr creating /<>/debian/python3-pymummer/usr/lib creating /<>/debian/python3-pymummer/usr/lib/python3.7 creating /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages creating /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/coords_file.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/nucmer.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/alignment.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/variant.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/snp_file.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/syscall.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/snp.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer copying /<>/.pybuild/cpython3_3.7_pymummer/build/pymummer/__init__.py -> /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/coords_file.py to coords_file.cpython-37.pyc byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/nucmer.py to nucmer.cpython-37.pyc byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/alignment.py to alignment.cpython-37.pyc byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/variant.py to variant.cpython-37.pyc byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/snp_file.py to snp_file.cpython-37.pyc byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/syscall.py to syscall.cpython-37.pyc byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/snp.py to snp.cpython-37.pyc byte-compiling /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer/__init__.py to __init__.cpython-37.pyc running install_egg_info running egg_info writing pymummer.egg-info/PKG-INFO writing dependency_links to pymummer.egg-info/dependency_links.txt writing requirements to pymummer.egg-info/requires.txt writing top-level names to pymummer.egg-info/top_level.txt reading manifest file 'pymummer.egg-info/SOURCES.txt' writing manifest file 'pymummer.egg-info/SOURCES.txt' Copying pymummer.egg-info to /<>/debian/python3-pymummer/usr/lib/python3.7/dist-packages/pymummer-0.10.3.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild INFO: pkgstriptranslations version 143 pkgstriptranslations: processing python3-pymummer (in debian/python3-pymummer); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pymummer/DEBIAN/control, package python3-pymummer, directory debian/python3-pymummer pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pymummer ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pymummer' in '../python3-pymummer_0.10.3-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../python-pymummer_0.10.3-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190107-1717 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-pymummer_0.10.3-2_amd64.changes: --------------------------------------- Format: 1.8 Date: Mon, 07 Jan 2019 09:37:20 +0100 Source: python-pymummer Binary: python3-pymummer Architecture: all Version: 0.10.3-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: python3-pymummer - Python 3 interface to MUMmer Changes: python-pymummer (0.10.3-2) unstable; urgency=medium . * Team upload. * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target Checksums-Sha1: ded18c506de63df5c48891d74ab313d4b62349d3 6512 python-pymummer_0.10.3-2_amd64.buildinfo b12baa1dc4ca39de4519cc71fd9e49622d656a2d 9312 python3-pymummer_0.10.3-2_all.deb Checksums-Sha256: 99cd4fb465c1e4c4d16d7f2ecd6acf77eeff7919fa1b075a9a73968ae69dfb94 6512 python-pymummer_0.10.3-2_amd64.buildinfo d36683119f2af86eda39f8411fcbd016850cab31a816414d7fa475c7ed4ee0ed 9312 python3-pymummer_0.10.3-2_all.deb Files: d30d5c70780b5a2a58e69062a54446d0 6512 python optional python-pymummer_0.10.3-2_amd64.buildinfo 9708b92ab4d5976874b7e72e9ed5a629 9312 python optional python3-pymummer_0.10.3-2_all.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-pymummer_0.10.3-2_all.deb --------------------------------- new debian package, version 2.0. size 9312 bytes: control archive=1432 bytes. 571 bytes, 14 lines control 1323 bytes, 15 lines md5sums 258 bytes, 12 lines * postinst #!/bin/sh 407 bytes, 12 lines * prerm #!/bin/sh Package: python3-pymummer Source: python-pymummer Version: 0.10.3-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 47 Depends: fastaq (>= 3.10.0), python3:any, mummer Section: python Priority: optional Homepage: https://github.com/sanger-pathogens/pymummer Description: Python 3 interface to MUMmer pymummer is a Python wrapper for running the programs of the MUMmer sequence alignment suite and parsing their output. drwxr-xr-x root/root 0 2019-01-07 08:37 ./ drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/ drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/lib/python3/ drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/lib/python3/dist-packages/pymummer-0.10.3.egg-info/ -rw-r--r-- root/root 505 2019-01-07 08:37 ./usr/lib/python3/dist-packages/pymummer-0.10.3.egg-info/PKG-INFO -rw-r--r-- root/root 1 2019-01-07 08:37 ./usr/lib/python3/dist-packages/pymummer-0.10.3.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2019-01-07 08:37 ./usr/lib/python3/dist-packages/pymummer-0.10.3.egg-info/requires.txt -rw-r--r-- root/root 9 2019-01-07 08:37 ./usr/lib/python3/dist-packages/pymummer-0.10.3.egg-info/top_level.txt drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/lib/python3/dist-packages/pymummer/ -rw-r--r-- root/root 285 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/__init__.py -rw-r--r-- root/root 9674 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/alignment.py -rw-r--r-- root/root 1789 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/coords_file.py -rw-r--r-- root/root 4223 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/nucmer.py -rw-r--r-- root/root 1447 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/snp.py -rw-r--r-- root/root 522 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/snp_file.py -rw-r--r-- root/root 754 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/syscall.py -rw-r--r-- root/root 2683 2017-08-21 14:13 ./usr/lib/python3/dist-packages/pymummer/variant.py drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/share/ drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-07 08:37 ./usr/share/doc/python3-pymummer/ -rw-r--r-- root/root 2106 2017-08-21 14:13 ./usr/share/doc/python3-pymummer/README.md -rw-r--r-- root/root 592 2019-01-07 08:37 ./usr/share/doc/python3-pymummer/changelog.Debian.gz -rw-r--r-- root/root 1084 2019-01-07 08:37 ./usr/share/doc/python3-pymummer/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 664 Build-Time: 8 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 24 Job: python-pymummer_0.10.3-2.dsc Machine Architecture: amd64 Package: python-pymummer Package-Time: 33 Source-Version: 0.10.3-2 Space: 664 Status: successful Version: 0.10.3-2 -------------------------------------------------------------------------------- Finished at 20190107-1717 Build needed 00:00:33, 664k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16244751 Scanning for processes to kill in build PACKAGEBUILD-16244751