https://launchpad.net/ubuntu/+source/python-skbio/0.5.5-4/+build/18744266 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-065 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:42:38 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Feb 23:13:52 ntpdate[1941]: adjust time server 10.211.37.1 offset -0.004749 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18744266 --image-type chroot /home/buildd/filecache-default/9d93b4075e16ce7cfbdf01f21507152b0a173b17 Creating target for build PACKAGEBUILD-18744266 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18744266 Starting target for build PACKAGEBUILD-18744266 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18744266 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18744266 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18744266 Updating target for build PACKAGEBUILD-18744266 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 Packages [951 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [505 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe arm64 Packages [8452 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5149 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 Packages [109 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [53.4 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 Packages [497 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [274 kB] Fetched 16.7 MB in 7s (2309 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base procps sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux 111 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 59.6 MB of archives. After this operation, 40.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main arm64 libc6-dev arm64 2.30-0ubuntu3 [2091 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main arm64 libc-dev-bin arm64 2.30-0ubuntu3 [64.1 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 linux-libc-dev arm64 5.4.0-15.18 [1126 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main arm64 gcc-10-base arm64 10-20200211-1ubuntu1 [18.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 libgmp10 arm64 2:6.2.0+dfsg-3 [217 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main arm64 libisl22 arm64 0.22.1-1 [537 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main arm64 libcc1-0 arm64 10-20200211-1ubuntu1 [37.2 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main arm64 libctf-nobfd0 arm64 2.34-1ubuntu1 [43.2 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main arm64 libctf0 arm64 2.34-1ubuntu1 [43.0 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main arm64 binutils-aarch64-linux-gnu arm64 2.34-1ubuntu1 [1986 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main arm64 libbinutils arm64 2.34-1ubuntu1 [474 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main arm64 binutils-common arm64 2.34-1ubuntu1 [206 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main arm64 binutils arm64 2.34-1ubuntu1 [3352 B] Get:14 http://ftpmaster.internal/ubuntu focal/main arm64 libstdc++-9-dev arm64 9.2.1-28ubuntu1 [1674 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main arm64 g++-9 arm64 9.2.1-28ubuntu1 [6812 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main arm64 gcc-9 arm64 9.2.1-28ubuntu1 [6673 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main arm64 cpp-9 arm64 9.2.1-28ubuntu1 [5960 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main arm64 libubsan1 arm64 10-20200211-1ubuntu1 [127 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main arm64 libtsan0 arm64 10-20200211-1ubuntu1 [303 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main arm64 liblsan0 arm64 10-20200211-1ubuntu1 [130 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main arm64 libitm1 arm64 10-20200211-1ubuntu1 [23.7 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main arm64 libgomp1 arm64 10-20200211-1ubuntu1 [91.9 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main arm64 gcc-9-base arm64 9.2.1-28ubuntu1 [19.0 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main arm64 libatomic1 arm64 10-20200211-1ubuntu1 [9208 B] Get:25 http://ftpmaster.internal/ubuntu focal/main arm64 libasan5 arm64 9.2.1-28ubuntu1 [365 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main arm64 libgcc-9-dev arm64 9.2.1-28ubuntu1 [916 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main arm64 libgcc-s1 arm64 10-20200211-1ubuntu1 [34.7 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main arm64 libgcc1 arm64 1:10-20200211-1ubuntu1 [34.6 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main arm64 libstdc++6 arm64 10-20200211-1ubuntu1 [463 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main arm64 libc6 arm64 2.30-0ubuntu3 [2273 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main arm64 base-files arm64 11ubuntu2 [60.0 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main arm64 debianutils arm64 4.9.1 [85.6 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main arm64 bash arm64 5.0-5ubuntu1 [603 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main arm64 bsdutils arm64 1:2.34-0.1ubuntu7 [60.6 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main arm64 findutils arm64 4.7.0-1ubuntu1 [320 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main arm64 grep arm64 3.4-1 [143 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main arm64 gzip arm64 1.10-0ubuntu4 [93.0 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main arm64 hostname arm64 3.23 [11.1 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main arm64 login arm64 1:4.8.1-1ubuntu1 [218 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main arm64 ncurses-bin arm64 6.1+20191019-1ubuntu1 [166 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main arm64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main arm64 libperl5.30 arm64 5.30.0-9 [3764 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main arm64 perl arm64 5.30.0-9 [224 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main arm64 perl-base arm64 5.30.0-9 [1389 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main arm64 bzip2 arm64 1.0.8-2 [33.0 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main arm64 libbz2-1.0 arm64 1.0.8-2 [32.9 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main arm64 libblkid1 arm64 2.34-0.1ubuntu7 [129 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main arm64 libuuid1 arm64 2.34-0.1ubuntu7 [19.8 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main arm64 libfdisk1 arm64 2.34-0.1ubuntu7 [160 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre2-8-0 arm64 10.34-7 [170 kB] Get:51 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libselinux1 arm64 3.0-1build1 [65.0 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main arm64 libmount1 arm64 2.34-0.1ubuntu7 [140 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main arm64 libncurses6 arm64 6.1+20191019-1ubuntu1 [91.8 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main arm64 libtinfo6 arm64 6.1+20191019-1ubuntu1 [80.4 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main arm64 libncursesw6 arm64 6.1+20191019-1ubuntu1 [120 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main arm64 libsmartcols1 arm64 2.34-0.1ubuntu7 [93.4 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main arm64 fdisk arm64 2.34-0.1ubuntu7 [114 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main arm64 util-linux arm64 2.34-0.1ubuntu7 [981 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main arm64 libdebconfclient0 arm64 0.251ubuntu1 [6076 B] Get:60 http://ftpmaster.internal/ubuntu focal/main arm64 base-passwd arm64 3.5.47 [47.0 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main arm64 libc-bin arm64 2.30-0ubuntu3 [502 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main arm64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main arm64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main arm64 sysvinit-utils arm64 2.96-2.1ubuntu1 [20.4 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main arm64 libgpg-error0 arm64 1.37-1 [55.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main arm64 libgcrypt20 arm64 1.8.5-3ubuntu1 [350 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main arm64 liblz4-1 arm64 1.9.2-2 [52.7 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main arm64 systemd-sysv arm64 244.2-1ubuntu1 [9368 B] Get:69 http://ftpmaster.internal/ubuntu focal/main arm64 libacl1 arm64 2.2.53-5ubuntu1 [17.7 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main arm64 libapparmor1 arm64 2.13.3-7ubuntu2 [33.0 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main arm64 libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:72 http://ftpmaster.internal/ubuntu focal/main arm64 libcap-ng0 arm64 0.7.9-2.1build1 [10.5 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main arm64 libaudit1 arm64 1:2.8.5-2ubuntu6 [38.2 kB] Get:74 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libcap2 arm64 1:2.32-1 [15.5 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main arm64 libudev1 arm64 244.2-1ubuntu1 [71.1 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main arm64 libdevmapper1.02.1 arm64 2:1.02.167-1ubuntu1 [110 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main arm64 libjson-c4 arm64 0.13.1+dfsg-7 [28.0 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main arm64 libssl1.1 arm64 1.1.1d-2ubuntu3 [1153 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main arm64 libcryptsetup12 arm64 2:2.2.2-3ubuntu1 [166 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main arm64 libnettle7 arm64 3.5.1+really3.5.1-2 [124 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main arm64 libhogweed5 arm64 3.5.1+really3.5.1-2 [134 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main arm64 libffi7 arm64 3.3-3 [17.1 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main arm64 libp11-kit0 arm64 0.23.20-1build1 [178 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main arm64 libtasn1-6 arm64 4.16.0-2 [36.5 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main arm64 libgnutls30 arm64 3.6.11.1-2ubuntu2 [720 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main arm64 libip4tc2 arm64 1.8.4-3ubuntu1 [18.4 kB] Get:87 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libkmod2 arm64 27-1ubuntu1 [40.8 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main arm64 libpam0g arm64 1.3.1-5ubuntu4 [53.9 kB] Get:89 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libseccomp2 arm64 2.4.2-2ubuntu3 [39.7 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main arm64 mount arm64 2.34-0.1ubuntu7 [112 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main arm64 systemd arm64 244.2-1ubuntu1 [3385 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main arm64 libsystemd0 arm64 244.2-1ubuntu1 [240 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main arm64 libzstd1 arm64 1.4.4+dfsg-3 [216 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main arm64 libapt-pkg5.90 arm64 1.9.10 [778 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main arm64 gpgv arm64 2.2.17-3ubuntu1 [183 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main arm64 ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main arm64 apt arm64 1.9.10 [1231 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main arm64 libpam-modules-bin arm64 1.3.1-5ubuntu4 [35.8 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main arm64 libpam-modules arm64 1.3.1-5ubuntu4 [242 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main arm64 logsave arm64 1.45.5-2ubuntu1 [10.1 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main arm64 libext2fs2 arm64 1.45.5-2ubuntu1 [177 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main arm64 e2fsprogs arm64 1.45.5-2ubuntu1 [504 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main arm64 libattr1 arm64 1:2.4.48-5 [12.5 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main arm64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main arm64 libsepol1 arm64 3.0-1 [231 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main arm64 libsemanage-common all 3.0-1build1 [9876 B] Get:107 http://ftpmaster.internal/ubuntu focal/main arm64 libsemanage1 arm64 3.0-1build1 [79.4 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main arm64 passwd arm64 1:4.8.1-1ubuntu1 [771 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main arm64 libcom-err2 arm64 1.45.5-2ubuntu1 [9228 B] Get:110 http://ftpmaster.internal/ubuntu focal/main arm64 libss2 arm64 1.45.5-2ubuntu1 [10.7 kB] Get:111 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libprocps8 arm64 2:3.3.16-1ubuntu1 [31.9 kB] Get:112 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 procps arm64 2:3.3.16-1ubuntu1 [229 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main arm64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main arm64 libsqlite3-0 arm64 3.31.1-1ubuntu1 [507 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main arm64 openssl arm64 1.1.1d-2ubuntu3 [597 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main arm64 libpng16-16 arm64 1.6.37-2 [174 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main arm64 libassuan0 arm64 2.5.3-7ubuntu2 [33.1 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main arm64 gpg arm64 2.2.17-3ubuntu1 [437 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main arm64 gpgconf arm64 2.2.17-3ubuntu1 [117 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main arm64 gpg-agent arm64 2.2.17-3ubuntu1 [216 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main arm64 liblockfile-bin arm64 1.16-1.1 [11.3 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main arm64 liblockfile1 arm64 1.16-1.1 [6440 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.6 MB in 3s (22.7 MB/s) (Reading database ... 12731 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_arm64.deb ... Unpacking libc6-dev:arm64 (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_arm64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-15.18_arm64.deb ... Unpacking linux-libc-dev:arm64 (5.4.0-15.18) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:arm64. Preparing to unpack .../gcc-10-base_10-20200211-1ubuntu1_arm64.deb ... Unpacking gcc-10-base:arm64 (10-20200211-1ubuntu1) ... Setting up gcc-10-base:arm64 (10-20200211-1ubuntu1) ... (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-3_arm64.deb ... Unpacking libgmp10:arm64 (2:6.2.0+dfsg-3) over (2:6.1.2+dfsg-4) ... Setting up libgmp10:arm64 (2:6.2.0+dfsg-3) ... Selecting previously unselected package libisl22:arm64. 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Setting up mount (2.34-0.1ubuntu7) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:arm64 (5.30.0-9) ... Setting up libisl22:arm64 (0.22.1-1) ... Setting up liblockfile1:arm64 (1.16-1.1) ... Setting up libjson-c4:arm64 (0.13.1+dfsg-7) ... Setting up libbinutils:arm64 (2.34-1ubuntu1) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up openssl (1.1.1d-2ubuntu3) ... Setting up libcc1-0:arm64 (10-20200211-1ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up liblsan0:arm64 (10-20200211-1ubuntu1) ... Setting up libprocps8:arm64 (2:3.3.16-1ubuntu1) ... Setting up libitm1:arm64 (10-20200211-1ubuntu1) ... Setting up libkmod2:arm64 (27-1ubuntu1) ... Setting up gcc-9-base:arm64 (9.2.1-28ubuntu1) ... Setting up libtsan0:arm64 (10-20200211-1ubuntu1) ... Setting up libctf0:arm64 (2.34-1ubuntu1) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up binutils-aarch64-linux-gnu (2.34-1ubuntu1) ... Setting up e2fsprogs (1.45.5-2ubuntu1) ... Setting up binutils (2.34-1ubuntu1) ... Setting up libasan5:arm64 (9.2.1-28ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up procps (2:3.3.16-1ubuntu1) ... Removing obsolete conffile /etc/sysctl.d/protect-links.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up cpp-9 (9.2.1-28ubuntu1) ... Setting up libc6-dev:arm64 (2.30-0ubuntu3) ... Setting up libcryptsetup12:arm64 (2:2.2.2-3ubuntu1) ... Setting up systemd (244.2-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up libgcc-9-dev:arm64 (9.2.1-28ubuntu1) ... Setting up gcc-9 (9.2.1-28ubuntu1) ... Setting up systemd-sysv (244.2-1ubuntu1) ... Setting up libstdc++-9-dev:arm64 (9.2.1-28ubuntu1) ... Setting up g++-9 (9.2.1-28ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18744266 arm64 focal-proposed -c chroot:build-PACKAGEBUILD-18744266 --arch=arm64 --dist=focal-proposed --nolog python-skbio_0.5.5-4.dsc Initiating build PACKAGEBUILD-18744266 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:42:38 UTC 2020 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-065.buildd +==============================================================================+ | python-skbio 0.5.5-4 (arm64) 21 Feb 2020 23:14 | +==============================================================================+ Package: python-skbio Version: 0.5.5-4 Source Version: 0.5.5-4 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/python-skbio-R64P81/python-skbio-0.5.5' with '<>' I: NOTICE: Log filtering will replace 'build/python-skbio-R64P81' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18744266/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-skbio_0.5.5-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-_E6FQz/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-_E6FQz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-_E6FQz/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-_E6FQz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-_E6FQz/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-_E6FQz/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (87.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-_E6FQz/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (73.6 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14674 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, ipython3, python3-all-dev, python3-bz2file, python3-cachecontrol, python3-contextlib2, python3-decorator, python3-future, python3-hdmedians, python3-lockfile, python3-matplotlib, python3-natsort, python3-nose, python3-numpy (>= 1:1.9.2), python3-numpydoc, python3-pandas (>= 0.19.2), python3-scipy (>= 1.3.3), python3-setuptools, python3-sklearn, python3-sphinx, python3-sphinx-bootstrap-theme, libssw-dev Filtered Build-Depends: debhelper-compat (= 12), dh-python, ipython3, python3-all-dev, python3-bz2file, python3-cachecontrol, python3-contextlib2, python3-decorator, python3-future, python3-hdmedians, python3-lockfile, python3-matplotlib, python3-natsort, python3-nose, python3-numpy (>= 1:1.9.2), python3-numpydoc, python3-pandas (>= 0.19.2), python3-scipy (>= 1.3.3), python3-setuptools, python3-sklearn, python3-sphinx, python3-sphinx-bootstrap-theme, libssw-dev dpkg-deb: building package 'sbuild-build-depends-python-skbio-dummy' in '/<>/resolver-WQ3Ect/apt_archive/sbuild-build-depends-python-skbio-dummy.deb'. Ign:1 copy:/<>/resolver-WQ3Ect/apt_archive ./ InRelease Get:2 copy:/<>/resolver-WQ3Ect/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-WQ3Ect/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-WQ3Ect/apt_archive ./ Sources [377 B] Get:5 copy:/<>/resolver-WQ3Ect/apt_archive ./ Packages [708 B] Fetched 3204 B in 0s (94.1 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install python-skbio build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fonts-lyx gettext gettext-base groff-base intltool-debian ipython3 libarchive-zip-perl libatlas3-base libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libicu65 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-babel python3-backcall python3-bz2file python3-cachecontrol python3-certifi python3-chardet python3-contextlib2 python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-future python3-hdmedians python3-idna python3-imagesize python3-ipython python3-ipython-genutils python3-jedi python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-markupsafe python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-sklearn python3-sklearn-lib python3-sphinx python3-sphinx-bootstrap-theme python3-traitlets python3-tz python3-urllib3 python3-wcwidth python3.8 python3.8-dev python3.8-minimal sgml-base sphinx-common ttf-bitstream-vera xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-future-doc python-jinja2-doc python-lockfile-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pandas-doc python3-statsmodels python-pexpect-doc python-pygments-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-scipy-doc python-setuptools-doc python3-dap python-sklearn-doc imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme python3-stemmer sphinx-doc texlive-fonts-recommended texlive-plain-generic python3.8-venv python3.8-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl libpaper-utils python3-pil python3-pytest python3-simplejson python3-psutil python3-tk python-natsort-doc python3-numexpr python3-tables python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fonts-lyx gettext gettext-base groff-base intltool-debian ipython3 libarchive-zip-perl libatlas3-base libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libicu65 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-babel python3-backcall python3-bz2file python3-cachecontrol python3-certifi python3-chardet python3-contextlib2 python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-future python3-hdmedians python3-idna python3-imagesize python3-ipython python3-ipython-genutils python3-jedi python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-markupsafe python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-sklearn python3-sklearn-lib python3-sphinx python3-sphinx-bootstrap-theme python3-traitlets python3-tz python3-urllib3 python3-wcwidth python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-python-skbio-dummy sgml-base sphinx-common ttf-bitstream-vera xml-core zlib1g-dev 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 76.3 MB of archives. After this operation, 348 MB of additional disk space will be used. Get:1 copy:/<>/resolver-WQ3Ect/apt_archive ./ sbuild-build-depends-python-skbio-dummy 0.invalid.0 [1032 B] Get:2 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libpython3.8-minimal arm64 3.8.2~rc2-2 [702 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main arm64 libexpat1 arm64 2.2.9-1 [61.3 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3.8-minimal arm64 3.8.2~rc2-2 [1827 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 python3-minimal arm64 3.8.0-3ubuntu1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main arm64 mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main arm64 libmpdec2 arm64 2.4.2-2 [74.0 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libpython3.8-stdlib arm64 3.8.2~rc2-2 [1642 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3.8 arm64 3.8.2~rc2-2 [363 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main arm64 libpython3-stdlib arm64 3.8.0-3ubuntu1 [6872 B] Get:11 http://ftpmaster.internal/ubuntu focal/main arm64 python3 arm64 3.8.0-3ubuntu1 [47.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main arm64 groff-base arm64 1.22.4-4 [815 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main arm64 libpipeline1 arm64 1.5.2-2build1 [26.1 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main arm64 man-db arm64 2.9.0-2 [1097 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main arm64 sgml-base all 1.29.1 [12.4 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main arm64 libmagic-mgc arm64 1:5.38-4 [218 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main arm64 libmagic1 arm64 1:5.38-4 [71.7 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main arm64 file arm64 1:5.38-4 [23.3 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main arm64 libelf1 arm64 0.176-1.1build1 [44.2 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libglib2.0-0 arm64 2.63.5-2 [1196 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libicu65 arm64 65.1-1ubuntu1 [8340 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libxml2 arm64 2.9.10+dfsg-1ubuntu2 [569 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main arm64 python3-pkg-resources all 44.0.0-1 [100 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main arm64 python3-six all 1.14.0-2 [12.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main arm64 gettext-base arm64 0.19.8.1-10 [48.4 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main arm64 m4 arm64 1.4.18-4 [194 kB] Get:31 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libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main arm64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:43 http://ftpmaster.internal/ubuntu focal/main arm64 dwz arm64 0.13-5 [134 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main arm64 libcroco3 arm64 0.6.13-1 [77.1 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main arm64 gettext arm64 0.19.8.1-10 [851 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main arm64 po-debconf all 1.0.21 [233 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main arm64 debhelper all 12.9ubuntu1 [869 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main arm64 python3-lib2to3 all 3.8.0-1 [75.6 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main arm64 python3-distutils all 3.8.0-1 [142 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main arm64 dh-python all 4.20191017ubuntu5 [88.0 kB] 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Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../058-libgfortran5_10-20200211-1ubuntu1_arm64.deb ... Unpacking libgfortran5:arm64 (10-20200211-1ubuntu1) ... Selecting previously unselected package libatlas3-base:arm64. Preparing to unpack .../059-libatlas3-base_3.10.3-8ubuntu5_arm64.deb ... Unpacking libatlas3-base:arm64 (3.10.3-8ubuntu5) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../060-libblas3_3.9.0-1_arm64.deb ... Unpacking libblas3:arm64 (3.9.0-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../061-libexpat1-dev_2.2.9-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.2.9-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../062-libfreetype6_2.10.1-2_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.1-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../063-libjs-jquery_3.3.1~dfsg-3_all.deb ... 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Selecting previously unselected package python-babel-localedata. Preparing to unpack .../075-python-babel-localedata_2.6.0+dfsg.1-1ubuntu1_all.deb ... Unpacking python-babel-localedata (2.6.0+dfsg.1-1ubuntu1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../076-ttf-bitstream-vera_1.10-8_all.deb ... Unpacking ttf-bitstream-vera (1.10-8) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../077-python-matplotlib-data_3.1.2-1ubuntu3_all.deb ... Unpacking python-matplotlib-data (3.1.2-1ubuntu3) ... Selecting previously unselected package python3-all. Preparing to unpack .../078-python3-all_3.8.0-3ubuntu1_arm64.deb ... Unpacking python3-all (3.8.0-3ubuntu1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../079-zlib1g-dev_1%3a1.2.11.dfsg-1ubuntu3_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-1ubuntu3) ... Selecting previously unselected package python3.8-dev. 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Selecting previously unselected package python3-lockfile. Preparing to unpack .../092-python3-lockfile_1%3a0.12.2-2ubuntu2_all.deb ... Unpacking python3-lockfile (1:0.12.2-2ubuntu2) ... Selecting previously unselected package python3-cachecontrol. Preparing to unpack .../093-python3-cachecontrol_0.12.6-1ubuntu1_all.deb ... Unpacking python3-cachecontrol (0.12.6-1ubuntu1) ... Selecting previously unselected package python3-contextlib2. Preparing to unpack .../094-python3-contextlib2_0.5.5-3build1_all.deb ... Unpacking python3-contextlib2 (0.5.5-3build1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../095-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../096-python3-dateutil_2.7.3-3ubuntu1_all.deb ... Unpacking python3-dateutil (2.7.3-3ubuntu1) ... Selecting previously unselected package python3-roman. 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Unpacking python3-imagesize (1.2.0-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../103-python3-markupsafe_1.1.0-1build2_arm64.deb ... Unpacking python3-markupsafe (1.1.0-1build2) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../104-python3-jinja2_2.10.1-1ubuntu1_all.deb ... Unpacking python3-jinja2 (2.10.1-1ubuntu1) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../105-python3-joblib_0.14.0-3_all.deb ... Unpacking python3-joblib (0.14.0-3) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../106-python3-kiwisolver_1.0.1-3build1_arm64.deb ... Unpacking python3-kiwisolver (1.0.1-3build1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../107-python3-pyparsing_2.4.6-1_all.deb ... Unpacking python3-pyparsing (2.4.6-1) ... Selecting previously unselected package python3-matplotlib. 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Selecting previously unselected package python3-sphinx. Preparing to unpack .../114-python3-sphinx_1.8.5-5_all.deb ... Unpacking python3-sphinx (1.8.5-5) ... Selecting previously unselected package python3-numpydoc. Preparing to unpack .../115-python3-numpydoc_0.7.0-2_all.deb ... Unpacking python3-numpydoc (0.7.0-2) ... Selecting previously unselected package python3-pandas-lib. Preparing to unpack .../116-python3-pandas-lib_0.25.3+dfsg-4build1_arm64.deb ... Unpacking python3-pandas-lib (0.25.3+dfsg-4build1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../117-python3-pandas_0.25.3+dfsg-4build1_all.deb ... Unpacking python3-pandas (0.25.3+dfsg-4build1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../118-python3-setuptools_44.0.0-1_all.deb ... Unpacking python3-setuptools (44.0.0-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../119-python3-scipy_1.3.3-3build1_arm64.deb ... Unpacking python3-scipy (1.3.3-3build1) ... Selecting previously unselected package python3-sklearn-lib. Preparing to unpack .../120-python3-sklearn-lib_0.20.3+dfsg-0ubuntu3_arm64.deb ... Unpacking python3-sklearn-lib (0.20.3+dfsg-0ubuntu3) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../121-python3-sklearn_0.20.3+dfsg-0ubuntu3_all.deb ... Unpacking python3-sklearn (0.20.3+dfsg-0ubuntu3) ... Selecting previously unselected package python3-sphinx-bootstrap-theme. Preparing to unpack .../122-python3-sphinx-bootstrap-theme_0.6.5-2_all.deb ... Unpacking python3-sphinx-bootstrap-theme (0.6.5-2) ... Selecting previously unselected package sbuild-build-depends-python-skbio-dummy. Preparing to unpack .../123-sbuild-build-depends-python-skbio-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-python-skbio-dummy (0.invalid.0) ... Setting up libpipeline1:arm64 (1.5.2-2build1) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.64ubuntu1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:arm64 (2.63.5-2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.4.2-2) ... Setting up libdebhelper-perl (12.9ubuntu1) ... Setting up libicu65:arm64 (65.1-1ubuntu1) ... Setting up libmagic1:arm64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:arm64 (3.9.0-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.2.9-1) ... Setting up libfreetype6:arm64 (2.10.1-2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libgfortran5:arm64 (10-20200211-1ubuntu1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.29.1) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libpython3.8-stdlib:arm64 (3.8.2~rc2-2) ... Setting up python3.8 (3.8.2~rc2-2) ... Setting up python-matplotlib-data (3.1.2-1ubuntu3) ... Setting up libbsd0:arm64 (0.10.0-1) ... Setting up libelf1:arm64 (0.176-1.1build1) ... Setting up libssw0:arm64 (1.1-9) ... Setting up libxml2:arm64 (2.9.10+dfsg-1ubuntu2) ... Setting up libpython3-stdlib:arm64 (3.8.0-3ubuntu1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up liblapack3:arm64 (3.9.0-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libatlas3-base:arm64 (3.10.3-8ubuntu5) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libssw-dev:arm64 (1.1-9) ... Setting up libtool (2.4.6-13) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.0-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-contextlib2 (0.5.5-3build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-markupsafe (1.1.0-1build2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-tz (2019.3-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-natsort (7.0.0-0ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-bz2file (0.98-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-six (1.14.0-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-roman (2.0.0-3build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-decorator (4.3.0-1.1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-jinja2 (2.10.1-1ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-pygments (2.3.1+dfsg-1ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up python3-wcwidth (0.1.8+dfsg1-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-pyparsing (2.4.6-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-certifi (2019.11.28-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8:arm64 (3.8.2~rc2-2) ... Setting up python3-cycler (0.10.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up python3-idna (2.6-2build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up cython3 (0.29.14-0.1ubuntu3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libcroco3:arm64 (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-5) ... Setting up python3-pickleshare (0.7.5-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up autoconf (2.69-11.1) ... Setting up python3-urllib3 (1.24.1-1ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up xml-core (0.18+nmu1) ... Setting up python3-dateutil (2.7.3-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-msgpack (0.5.6-3build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-lib2to3 (3.8.0-1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-7) ... Setting up python3-imagesize (1.2.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-ptyprocess (0.6.0-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-pkg-resources (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-prompt-toolkit (2.0.10-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu5) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-lockfile (1:0.12.2-2ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up gettext (0.19.8.1-10) ... Setting up python3-setuptools (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-backcall (0.1.0-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-joblib (0.14.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-parso (0.5.2-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-babel (2.6.0+dfsg.1-1ubuntu1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-ipython-genutils (0.2.0-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-alabaster (0.7.8-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-all (3.8.0-3ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-nose (1.3.7-5) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-packaging (20.1-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-chardet (3.0.4-4build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8-dev:arm64 (3.8.2~rc2-2) ... Setting up python3-sphinx-bootstrap-theme (0.6.5-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-pexpect (4.6.0-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up sphinx-common (1.8.5-5) ... Setting up python3-requests (2.22.0-2build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-kiwisolver (1.0.1-3build1) ... Setting up python3-numpy (1:1.17.4-5ubuntu3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3.8-dev (3.8.2~rc2-2) ... Setting up python3-hdmedians (0.13~git20171027.8e0e9e3-1build3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-traitlets (4.3.3-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-cachecontrol (0.12.6-1ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-future (0.18.2-1) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-matplotlib (3.1.2-1ubuntu3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-scipy (1.3.3-3build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3-dev:arm64 (3.8.0-3ubuntu1) ... Setting up python3-jedi (0.15.2-1ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up po-debconf (1.0.21) ... Setting up python3-pandas-lib (0.25.3+dfsg-4build1) ... Setting up python3-sklearn-lib (0.20.3+dfsg-0ubuntu3) ... Setting up python3-pandas (0.25.3+dfsg-4build1) ... /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3-all-dev:arm64 (3.8.0-3ubuntu1) ... Setting up python3-ipython (7.12.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-dev (3.8.0-3ubuntu1) ... Setting up python3-sklearn (0.20.3+dfsg-0ubuntu3) ... /usr/lib/python3/dist-packages/sklearn/datasets/lfw.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? if img.ndim is 0: /usr/lib/python3/dist-packages/sklearn/model_selection/tests/test_search.py:887: SyntaxWarning: "is not" with a literal. Did you mean "!="? if k is not 'rank_test_score') /usr/lib/python3/dist-packages/sklearn/model_selection/tests/test_search.py:890: SyntaxWarning: "is not" with a literal. Did you mean "!="? k is not 'rank_test_score') /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up ipython3 (7.12.0-1) ... Setting up python3-all-dev (3.8.0-3ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for sgml-base (1.29.1) ... Setting up docutils-common (0.16+dfsg-1) ... Processing triggers for sgml-base (1.29.1) ... Setting up python3-docutils (0.16+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-sphinx (1.8.5-5) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-numpydoc (0.7.0-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up sbuild-build-depends-python-skbio-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-174-generic arm64 (aarch64) Toolchain package versions: binutils_2.34-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-28ubuntu1 gcc-9_9.2.1-28ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 linux-libc-dev_5.4.0-15.18 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.10 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.34-1ubuntu1 binutils-aarch64-linux-gnu_2.34-1ubuntu1 binutils-common_2.34-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu7 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-28ubuntu1 cython3_0.29.14-0.1ubuntu3 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017ubuntu5 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 docutils-common_0.16+dfsg-1 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu7 file_1:5.38-4 findutils_4.7.0-1ubuntu1 fonts-lyx_2.3.4.2-2 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-28ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200211-1ubuntu1 gcc-9_9.2.1-28ubuntu1 gcc-9-base_9.2.1-28ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 ipython3_7.12.0-1 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu2 libapt-pkg5.90_1.9.10 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-28ubuntu1 libassuan0_2.5.3-7ubuntu2 libatlas3-base_3.10.3-8ubuntu5 libatomic1_10-20200211-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-1ubuntu1 libblas3_3.9.0-1 libblkid1_2.34-0.1ubuntu7 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200211-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-3ubuntu1 libctf-nobfd0_2.34-1ubuntu1 libctf0_2.34-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu7 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-28ubuntu1 libgcc-s1_10-20200211-1ubuntu1 libgcc1_1:10-20200211-1ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200211-1ubuntu1 libglib2.0-0_2.63.5-2 libgmp10_2:6.2.0+dfsg-3 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200211-1ubuntu1 libgpg-error0_1.37-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu65_65.1-1ubuntu1 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu1 libisl21_0.21-2 libisl22_0.22.1-1 libitm1_10-20200211-1ubuntu1 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.8.5-5 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu1 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200211-1ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu7 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu1 libpython3-all-dev_3.8.0-3ubuntu1 libpython3-dev_3.8.0-3ubuntu1 libpython3-stdlib_3.8.0-3ubuntu1 libpython3.8_3.8.2~rc2-2 libpython3.8-dev_3.8.2~rc2-2 libpython3.8-minimal_3.8.2~rc2-2 libpython3.8-stdlib_3.8.2~rc2-2 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu3 libselinux1_3.0-1build1 libsemanage-common_3.0-1build1 libsemanage1_3.0-1build1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu7 libsqlite3-0_3.31.1-1ubuntu1 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu3 libssw-dev_1.1-9 libssw0_1.1-9 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.2-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-13 libtsan0_10-20200211-1ubuntu1 libubsan1_10-20200211-1ubuntu1 libuchardet0_0.0.6-3 libudev1_244.2-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu7 libxml2_2.9.10+dfsg-1ubuntu2 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-15.18 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu1 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu7 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu1 python-babel-localedata_2.6.0+dfsg.1-1ubuntu1 python-matplotlib-data_3.1.2-1ubuntu3 python3_3.8.0-3ubuntu1 python3-alabaster_0.7.8-1build1 python3-all_3.8.0-3ubuntu1 python3-all-dev_3.8.0-3ubuntu1 python3-babel_2.6.0+dfsg.1-1ubuntu1 python3-backcall_0.1.0-2 python3-bz2file_0.98-3 python3-cachecontrol_0.12.6-1ubuntu1 python3-certifi_2019.11.28-1 python3-chardet_3.0.4-4build1 python3-contextlib2_0.5.5-3build1 python3-cycler_0.10.0-3 python3-dateutil_2.7.3-3ubuntu1 python3-decorator_4.3.0-1.1build1 python3-dev_3.8.0-3ubuntu1 python3-distutils_3.8.0-1 python3-docutils_0.16+dfsg-1 python3-future_0.18.2-1 python3-hdmedians_0.13~git20171027.8e0e9e3-1build3 python3-idna_2.6-2build1 python3-imagesize_1.2.0-1 python3-ipython_7.12.0-1 python3-ipython-genutils_0.2.0-1build1 python3-jedi_0.15.2-1ubuntu1 python3-jinja2_2.10.1-1ubuntu1 python3-joblib_0.14.0-3 python3-kiwisolver_1.0.1-3build1 python3-lib2to3_3.8.0-1 python3-lockfile_1:0.12.2-2ubuntu2 python3-markupsafe_1.1.0-1build2 python3-matplotlib_3.1.2-1ubuntu3 python3-minimal_3.8.0-3ubuntu1 python3-msgpack_0.5.6-3build1 python3-natsort_7.0.0-0ubuntu1 python3-nose_1.3.7-5 python3-numpy_1:1.17.4-5ubuntu3 python3-numpydoc_0.7.0-2 python3-packaging_20.1-1 python3-pandas_0.25.3+dfsg-4build1 python3-pandas-lib_0.25.3+dfsg-4build1 python3-parso_0.5.2-1 python3-pexpect_4.6.0-1build1 python3-pickleshare_0.7.5-1build1 python3-pkg-resources_44.0.0-1 python3-prompt-toolkit_2.0.10-2 python3-ptyprocess_0.6.0-1build1 python3-pygments_2.3.1+dfsg-1ubuntu2 python3-pyparsing_2.4.6-1 python3-requests_2.22.0-2build1 python3-roman_2.0.0-3build1 python3-scipy_1.3.3-3build1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3-sklearn_0.20.3+dfsg-0ubuntu3 python3-sklearn-lib_0.20.3+dfsg-0ubuntu3 python3-sphinx_1.8.5-5 python3-sphinx-bootstrap-theme_0.6.5-2 python3-traitlets_4.3.3-2 python3-tz_2019.3-1 python3-urllib3_1.24.1-1ubuntu2 python3-wcwidth_0.1.8+dfsg1-3 python3.8_3.8.2~rc2-2 python3.8-dev_3.8.2~rc2-2 python3.8-minimal_3.8.2~rc2-2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-skbio-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.29.1 sphinx-common_1.8.5-5 systemd_244.2-1ubuntu1 systemd-sysv_244.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-6 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu7 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Feb 21 15:04:46 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-skbio_0.5.5-4.dsc dpkg-source: info: extracting python-skbio in python-skbio-0.5.5 dpkg-source: info: unpacking python-skbio_0.5.5.orig.tar.gz dpkg-source: info: unpacking python-skbio_0.5.5-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax-path dpkg-source: info: applying 0002-use-libsww-as-library-not-embedded-src.patch dpkg-source: info: applying 0003-Cherry-pick-upstream-fix-for-numpy-transition.patch dpkg-source: info: applying no_privacy_breach_logo.patch dpkg-source: info: applying 6497020.patch dpkg-source: info: applying 9c061da7e2746aee403b41621f71b118ce5c52f8.patch dpkg-source: info: applying ignore_failing_patches.patch dpkg-source: info: applying simde dpkg-source: info: applying pandas_1_0_1 Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18744266 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18744266 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18744266 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-skbio dpkg-buildpackage: info: source version 0.5.5-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if [ "`find . -name "*.pyo"`" = "" ] ; then echo no need to clean up ; else dh_auto_clean; fi no need to clean up make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean find ./skbio -name '*.so' -delete rm -rf .eggs make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8_skbio/build/benchmarks copying benchmarks/benchmarks.py -> /<>/.pybuild/cpython3_3.8_skbio/build/benchmarks copying benchmarks/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/benchmarks creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio copying skbio/test.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio copying skbio/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio copying skbio/_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio copying skbio/workflow.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_nucleotide_mixin.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_rna.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_genetic_code.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_protein.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_dna.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_repr.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/distance.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_sequence.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence copying skbio/sequence/_grammared_sequence.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree copying skbio/tree/_majority_rule.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree copying skbio/tree/_tree.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree copying skbio/tree/_nj.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree copying skbio/tree/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree copying skbio/tree/_exception.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata copying skbio/metadata/_mixin.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata copying skbio/metadata/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata copying skbio/metadata/_repr.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata copying skbio/metadata/_testing.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata copying skbio/metadata/_interval.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats copying skbio/stats/power.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats copying skbio/stats/_subsample.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats copying skbio/stats/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats copying skbio/stats/_misc.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats copying skbio/stats/composition.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats copying skbio/stats/gradient.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util copying skbio/util/_decorator.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util copying skbio/util/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util copying skbio/util/_misc.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util copying skbio/util/_exception.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util copying skbio/util/_testing.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util copying skbio/util/_warning.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io copying skbio/io/_fileobject.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io copying skbio/io/registry.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io copying skbio/io/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io copying skbio/io/_exception.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io copying skbio/io/_iosources.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io copying skbio/io/_warning.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io copying skbio/io/util.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests copying skbio/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests copying skbio/tests/test_workflow.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests copying skbio/tests/test_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment copying skbio/alignment/_indexing.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment copying skbio/alignment/_tabular_msa.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment copying skbio/alignment/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment copying skbio/alignment/_pairwise.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment copying skbio/alignment/_repr.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity copying skbio/diversity/_block.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity copying skbio/diversity/_driver.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity copying skbio/diversity/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity copying skbio/diversity/_util.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_genetic_code.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_grammared_sequence.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_protein.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_distance.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_rna.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_dna.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_nucleotide_sequences.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_sequence.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_majority_rule.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_nj.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests copying skbio/tree/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_tree.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_interval.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_intersection.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_mixin.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_correspondence_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_ordination_results.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_principal_coordinate_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_utils.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_redundancy_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve copying skbio/stats/evolve/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve copying skbio/stats/evolve/_hommola.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance copying skbio/stats/distance/_bioenv.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance copying skbio/stats/distance/_permanova.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance copying skbio/stats/distance/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance copying skbio/stats/distance/_permdisp.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance copying skbio/stats/distance/_anosim.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance copying skbio/stats/distance/_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance copying skbio/stats/distance/_mantel.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_subsample.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_power.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests copying skbio/stats/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_composition.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_misc.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_gradient.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_util.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_ordination_results.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests copying skbio/stats/evolve/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests copying skbio/stats/evolve/tests/test_hommola.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_permdisp.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_permanova.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_bioenv.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_mantel.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_anosim.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests copying skbio/util/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests copying skbio/util/tests/test_decorator.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests copying skbio/util/tests/test_misc.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests copying skbio/util/tests/test_testing.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/blast7.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/fastq.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/clustal.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/gff3.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/ordination.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/genbank.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/stockholm.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/qseq.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/_blast.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/lsmat.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/embl.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/_sequence_feature_vocabulary.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/emptyfile.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/blast6.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/fasta.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/newick.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format copying skbio/io/format/phylip.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests copying skbio/io/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests copying skbio/io/tests/test_iosources.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests copying skbio/io/tests/test_util.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests copying skbio/io/tests/test_registry.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_phylip.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_embl.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_lsmat.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_stockholm.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_emptyfile.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_fasta.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_gff3.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_qseq.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_blast7.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_genbank.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_clustal.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_fastq.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_ordination.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_newick.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_blast6.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_lib copying skbio/alignment/_lib/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_lib creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/test_pairwise.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/test_tabular_msa.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/test_ssw.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_lladser.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_ace.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_gini.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_chao1.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_faith_pd.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta copying skbio/diversity/beta/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta copying skbio/diversity/beta/_unifrac.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/test_block.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/test_util.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/test_driver.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_lladser.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_ace.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_faith_pd.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_gini.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_chao1.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_base.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests copying skbio/diversity/beta/tests/__init__.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests copying skbio/diversity/beta/tests/test_unifrac.py -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_real_out -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_w_msg_out -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_data_raw -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_no_data_raw -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_out -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_wo_msg_out -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_wo_msg_raw -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_real_raw -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_raw -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_no_data_out -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_data_out -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_w_msg_raw -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_X -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/varespec.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_X -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_Y -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/varechem.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_skbio -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_Y -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/L&L_CA_data -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/df.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm_reordered.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm4.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm3.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm2.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/df_extra_column.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/real_file_2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/big5_file.bz2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/example_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/real_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/example_file.bz2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/example_file.gz -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/big5_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/big5_file.gz -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_msa -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_dna -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_and_blast7_default -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blanks_end_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_x -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_default_multi_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error22 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_10_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_single_seq_sanger -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_single_record -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_5 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/empty -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_lower -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error17 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_multi_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_multi_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_multi_record -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/tsv_8_fields -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_short_qual.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_escape.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_blank_lines -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record_upper -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_no_data -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_double_seq.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_missing_locus_name -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error24 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_metadata_only -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_references -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive_mixed -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_legacy_format -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_mixed_nans -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_reference -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/whitespace_only -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blank_lines_between_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_data_type -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error5 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_minimal -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_default_single_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_tabs.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error23 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error6 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_dna_3_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_feature_level_record -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_spaces.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_diff_ids.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_simple -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error16 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example2_scores -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_reference_items -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_no_data -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_filter -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_long -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_footer -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_missing_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error13 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_short -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_tile -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_null.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error21 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_minimal -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error18 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_upper -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_blank_lines -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_no_qual.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error14 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error3 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_read -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_uniprot_record -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_single_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error11 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error15 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_all_data_types -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error20 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_2_seqs_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_space.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error12 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_missing_directive -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error9 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error4 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_constructed -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record_lower -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_gr -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/tsv_10_fields -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_y -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_data_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_multi_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_5 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_variable_length_ids -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_multi_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error19 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_lane -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_data_only -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_vtab.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_gc -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_no_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_column_types -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_nonstring_labels -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_multi_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_tab.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_single_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error10 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_long_qual.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_rna -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_1 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_multi_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_trees -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_single_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_between_records -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error8 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example3_scores -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_single_line -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_different_padding -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_del.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_minimal -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_gibberish -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error7 -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_two_chunks -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_double_qual.fastq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_seq -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data creating /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt running build_ext building 'skbio.metadata._intersection' extension creating build creating build/temp.linux-arm64-3.8 creating build/temp.linux-arm64-3.8/skbio creating build/temp.linux-arm64-3.8/skbio/metadata aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/metadata/_intersection.c -o build/temp.linux-arm64-3.8/skbio/metadata/_intersection.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 skbio/metadata/_intersection.c: In function ‘PyInit__intersection’: skbio/metadata/_intersection.c:8617:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] 8617 | __pyx_type_5skbio_8metadata_13_intersection_IntervalNode.tp_print = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.8/object.h:746, from /usr/include/python3.8/pytime.h:6, from /usr/include/python3.8/Python.h:85, from skbio/metadata/_intersection.c:4: /usr/include/python3.8/cpython/object.h:260:30: note: declared here 260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); | ^~~~~~~~ skbio/metadata/_intersection.c:8622:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] 8622 | __pyx_type_5skbio_8metadata_13_intersection_IntervalObj.tp_print = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.8/object.h:746, from /usr/include/python3.8/pytime.h:6, from /usr/include/python3.8/Python.h:85, from skbio/metadata/_intersection.c:4: /usr/include/python3.8/cpython/object.h:260:30: note: declared here 260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); | ^~~~~~~~ skbio/metadata/_intersection.c:8626:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] 8626 | __pyx_type_5skbio_8metadata_13_intersection_IntervalTree.tp_print = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.8/object.h:746, from /usr/include/python3.8/pytime.h:6, from /usr/include/python3.8/Python.h:85, from skbio/metadata/_intersection.c:4: /usr/include/python3.8/cpython/object.h:260:30: note: declared here 260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); | ^~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/skbio/metadata/_intersection.o -o /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/_intersection.cpython-38-aarch64-linux-gnu.so building 'skbio.stats.__subsample' extension creating build/temp.linux-arm64-3.8/skbio/stats aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/stats/__subsample.c -o build/temp.linux-arm64-3.8/skbio/stats/__subsample.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/stats/__subsample.c:250: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/stats/__subsample.c:250: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/skbio/stats/__subsample.o -o /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__subsample.cpython-38-aarch64-linux-gnu.so building 'skbio.alignment._ssw_wrapper' extension creating build/temp.linux-arm64-3.8/skbio/alignment aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-arm64-3.8/skbio/alignment/_ssw_wrapper.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/alignment/_ssw_wrapper.c:256: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from skbio/alignment/_lib/ssw.h:17, from skbio/alignment/_ssw_wrapper.c:258: skbio/alignment/_lib/../../../debian/include/simde/x86/sse2.h: In function ‘simde_mm_bsrli_si128’: skbio/alignment/_lib/../../../debian/include/simde/x86/sse2.h:808:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 808 | for (int i = 0 ; i < (sizeof(r_.i8) / sizeof(r_.i8[0])) ; i++) { | ^ skbio/alignment/_ssw_wrapper.c: In function ‘PyInit__ssw_wrapper’: skbio/alignment/_ssw_wrapper.c:10044:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] 10044 | __pyx_type_5skbio_9alignment_12_ssw_wrapper_AlignmentStructure.tp_print = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.8/object.h:746, from /usr/include/python3.8/pytime.h:6, from /usr/include/python3.8/Python.h:85, from skbio/alignment/_ssw_wrapper.c:17: /usr/include/python3.8/cpython/object.h:260:30: note: declared here 260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); | ^~~~~~~~ skbio/alignment/_ssw_wrapper.c:10053:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] 10053 | __pyx_type_5skbio_9alignment_12_ssw_wrapper_StripedSmithWaterman.tp_print = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.8/object.h:746, from /usr/include/python3.8/pytime.h:6, from /usr/include/python3.8/Python.h:85, from skbio/alignment/_ssw_wrapper.c:17: /usr/include/python3.8/cpython/object.h:260:30: note: declared here 260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); | ^~~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/alignment/_ssw_wrapper.c:256: At top level: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/skbio/alignment/_ssw_wrapper.o -lssw -o /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_ssw_wrapper.cpython-38-aarch64-linux-gnu.so building 'skbio.diversity._phylogenetic' extension creating build/temp.linux-arm64-3.8/skbio/diversity aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-arm64-3.8/skbio/diversity/_phylogenetic.o -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/diversity/_phylogenetic.c:242: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/diversity/_phylogenetic.c:242: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/skbio/diversity/_phylogenetic.o -o /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/_phylogenetic.cpython-38-aarch64-linux-gnu.so PYTHONPATH=/<>/.pybuild/cpython3_3.8_skbio/build \ http_proxy='127.0.0.1:9' \ python3 `which sphinx-build` -b html -d doc/build/doctrees doc/source doc/build/html Running Sphinx v1.8.5 making output directory... [autosummary] generating autosummary for: alignment.rst, diversity.rst, index.rst, io.rst, metadata.rst, sequence.rst, stats.rst, tree.rst, util.rst, workflow.rst [autosummary] generating autosummary for: /<>/doc/source/generated/skbio.alignment.AlignmentStructure.rst, /<>/doc/source/generated/skbio.alignment.StripedSmithWaterman.rst, /<>/doc/source/generated/skbio.alignment.TabularMSA.rst, /<>/doc/source/generated/skbio.alignment.global_pairwise_align.rst, /<>/doc/source/generated/skbio.alignment.global_pairwise_align_nucleotide.rst, /<>/doc/source/generated/skbio.alignment.global_pairwise_align_protein.rst, /<>/doc/source/generated/skbio.alignment.local_pairwise_align.rst, /<>/doc/source/generated/skbio.alignment.local_pairwise_align_nucleotide.rst, /<>/doc/source/generated/skbio.alignment.local_pairwise_align_protein.rst, /<>/doc/source/generated/skbio.alignment.local_pairwise_align_ssw.rst, ..., /<>/doc/source/generated/skbio.util.assert_data_frame_almost_equal.rst, /<>/doc/source/generated/skbio.util.assert_ordination_results_equal.rst, /<>/doc/source/generated/skbio.util.cardinal_to_ordinal.rst, /<>/doc/source/generated/skbio.util.classproperty.rst, /<>/doc/source/generated/skbio.util.find_duplicates.rst, /<>/doc/source/generated/skbio.util.get_data_path.rst, /<>/doc/source/generated/skbio.util.safe_md5.rst, /<>/doc/source/generated/skbio.workflow.Workflow.rst, /<>/doc/source/generated/skbio.workflow.method.rst, /<>/doc/source/generated/skbio.workflow.requires.rst [autosummary] generating autosummary for: /<>/doc/source/generated/generated/skbio.io.util.open.rst, /<>/doc/source/generated/generated/skbio.io.util.open_file.rst, /<>/doc/source/generated/generated/skbio.io.util.open_files.rst, /<>/doc/source/generated/skbio.alignment.AlignmentStructure.__init_subclass__.rst, /<>/doc/source/generated/skbio.alignment.AlignmentStructure.is_zero_based.rst, /<>/doc/source/generated/skbio.alignment.AlignmentStructure.set_zero_based.rst, /<>/doc/source/generated/skbio.alignment.StripedSmithWaterman.__init_subclass__.rst, /<>/doc/source/generated/skbio.alignment.TabularMSA.__bool__.rst, /<>/doc/source/generated/skbio.alignment.TabularMSA.__contains__.rst, /<>/doc/source/generated/skbio.alignment.TabularMSA.__copy__.rst, ..., /<>/doc/source/generated/skbio.util.classproperty.deleter.rst, /<>/doc/source/generated/skbio.util.classproperty.getter.rst, /<>/doc/source/generated/skbio.util.classproperty.setter.rst, /<>/doc/source/generated/skbio.workflow.Workflow.__call__.rst, /<>/doc/source/generated/skbio.workflow.Workflow.__init_subclass__.rst, /<>/doc/source/generated/skbio.workflow.Workflow.initialize_state.rst, /<>/doc/source/generated/skbio.workflow.method.__call__.rst, /<>/doc/source/generated/skbio.workflow.method.__init_subclass__.rst, /<>/doc/source/generated/skbio.workflow.requires.__call__.rst, /<>/doc/source/generated/skbio.workflow.requires.__init_subclass__.rst [autosummary] generating autosummary for: /<>/doc/source/generated/skbio.io.registry.Format.__init_subclass__.rst, /<>/doc/source/generated/skbio.io.registry.Format.reader.rst, /<>/doc/source/generated/skbio.io.registry.Format.sniffer.rst, /<>/doc/source/generated/skbio.io.registry.Format.writer.rst, /<>/doc/source/generated/skbio.io.registry.IORegistry.__init_subclass__.rst, /<>/doc/source/generated/skbio.io.registry.IORegistry.add_format.rst, /<>/doc/source/generated/skbio.io.registry.IORegistry.create_format.rst, /<>/doc/source/generated/skbio.io.registry.IORegistry.get_reader.rst, /<>/doc/source/generated/skbio.io.registry.IORegistry.get_sniffer.rst, /<>/doc/source/generated/skbio.io.registry.IORegistry.get_writer.rst, ..., /<>/doc/source/generated/skbio.stats.gradient.GroupResults.to_files.rst, /<>/doc/source/generated/skbio.stats.gradient.TrajectoryGradientANOVA.__init_subclass__.rst, /<>/doc/source/generated/skbio.stats.gradient.TrajectoryGradientANOVA.get_trajectories.rst, /<>/doc/source/generated/skbio.stats.gradient.WindowDifferenceGradientANOVA.__init_subclass__.rst, /<>/doc/source/generated/skbio.stats.gradient.WindowDifferenceGradientANOVA.get_trajectories.rst, /<>/doc/source/generated/skbio.stats.ordination.OrdinationResults.__init_subclass__.rst, /<>/doc/source/generated/skbio.stats.ordination.OrdinationResults.__str__.rst, /<>/doc/source/generated/skbio.stats.ordination.OrdinationResults.plot.rst, /<>/doc/source/generated/skbio.stats.ordination.OrdinationResults.read.rst, /<>/doc/source/generated/skbio.stats.ordination.OrdinationResults.write.rst loading intersphinx inventory from http://docs.python.org/dev/objects.inv... /usr/lib/python3/dist-packages/sklearn/externals/joblib.py:1: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://docs.python.org/dev/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.python.org/dev/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://docs.scipy.org/doc/numpy/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.scipy.org/doc/numpy/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://docs.scipy.org/doc/scipy/reference/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.scipy.org/doc/scipy/reference/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from http://matplotlib.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://matplotlib.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://matplotlib.org/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://pandas.pydata.org/pandas-docs/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from http://www.biom-format.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://www.biom-format.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://www.biom-format.org/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) building [mo]: targets for 0 po files that are out of date building [html]: targets for 13 source files that are out of date updating environment: 638 added, 0 changed, 0 removed reading sources... [ 0%] alignment reading sources... [ 0%] development/coding_guidelines reading sources... [ 0%] development/new_module reading sources... [ 0%] diversity reading sources... [ 0%] generated/generated/skbio.io.util.open reading sources... [ 0%] generated/generated/skbio.io.util.open_file reading sources... [ 1%] generated/generated/skbio.io.util.open_files reading sources... [ 1%] generated/skbio.alignment.AlignmentStructure reading sources... [ 1%] generated/skbio.alignment.AlignmentStructure.__init_subclass__ reading sources... [ 1%] generated/skbio.alignment.AlignmentStructure.is_zero_based reading sources... [ 1%] generated/skbio.alignment.AlignmentStructure.set_zero_based reading sources... [ 1%] generated/skbio.alignment.StripedSmithWaterman reading sources... [ 2%] generated/skbio.alignment.StripedSmithWaterman.__init_subclass__ reading sources... [ 2%] generated/skbio.alignment.TabularMSA reading sources... [ 2%] generated/skbio.alignment.TabularMSA.__bool__ reading sources... [ 2%] generated/skbio.alignment.TabularMSA.__contains__ reading sources... [ 2%] generated/skbio.alignment.TabularMSA.__copy__ reading sources... [ 2%] generated/skbio.alignment.TabularMSA.__deepcopy__ reading sources... [ 2%] generated/skbio.alignment.TabularMSA.__eq__ reading sources... [ 3%] generated/skbio.alignment.TabularMSA.__getitem__ reading sources... 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[ 5%] generated/skbio.alignment.TabularMSA.has_positional_metadata reading sources... [ 5%] generated/skbio.alignment.TabularMSA.iter_positions reading sources... [ 5%] generated/skbio.alignment.TabularMSA.join reading sources... [ 5%] generated/skbio.alignment.TabularMSA.read reading sources... [ 5%] generated/skbio.alignment.TabularMSA.reassign_index reading sources... [ 6%] generated/skbio.alignment.TabularMSA.sort reading sources... [ 6%] generated/skbio.alignment.TabularMSA.to_dict reading sources... [ 6%] generated/skbio.alignment.TabularMSA.write reading sources... [ 6%] generated/skbio.alignment.global_pairwise_align reading sources... [ 6%] generated/skbio.alignment.global_pairwise_align_nucleotide reading sources... [ 6%] generated/skbio.alignment.global_pairwise_align_protein reading sources... [ 7%] generated/skbio.alignment.local_pairwise_align reading sources... [ 7%] generated/skbio.alignment.local_pairwise_align_nucleotide reading sources... [ 7%] generated/skbio.alignment.local_pairwise_align_protein reading sources... [ 7%] generated/skbio.alignment.local_pairwise_align_ssw reading sources... [ 7%] generated/skbio.alignment.make_identity_substitution_matrix reading sources... [ 7%] generated/skbio.diversity.alpha reading sources... [ 7%] generated/skbio.diversity.alpha.ace reading sources... [ 8%] generated/skbio.diversity.alpha.berger_parker_d reading sources... [ 8%] generated/skbio.diversity.alpha.brillouin_d reading sources... [ 8%] generated/skbio.diversity.alpha.chao1 reading sources... [ 8%] generated/skbio.diversity.alpha.chao1_ci reading sources... [ 8%] generated/skbio.diversity.alpha.dominance reading sources... [ 8%] generated/skbio.diversity.alpha.doubles reading sources... [ 9%] generated/skbio.diversity.alpha.enspie reading sources... [ 9%] generated/skbio.diversity.alpha.esty_ci reading sources... [ 9%] generated/skbio.diversity.alpha.faith_pd reading sources... [ 9%] generated/skbio.diversity.alpha.fisher_alpha reading sources... [ 9%] generated/skbio.diversity.alpha.gini_index reading sources... [ 9%] generated/skbio.diversity.alpha.goods_coverage reading sources... [ 10%] generated/skbio.diversity.alpha.heip_e reading sources... [ 10%] generated/skbio.diversity.alpha.kempton_taylor_q reading sources... [ 10%] generated/skbio.diversity.alpha.lladser_ci reading sources... [ 10%] generated/skbio.diversity.alpha.lladser_pe reading sources... [ 10%] generated/skbio.diversity.alpha.margalef reading sources... [ 10%] generated/skbio.diversity.alpha.mcintosh_d reading sources... [ 10%] generated/skbio.diversity.alpha.mcintosh_e reading sources... [ 11%] generated/skbio.diversity.alpha.menhinick reading sources... [ 11%] generated/skbio.diversity.alpha.michaelis_menten_fit reading sources... [ 11%] generated/skbio.diversity.alpha.observed_otus reading sources... [ 11%] generated/skbio.diversity.alpha.osd reading sources... 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[ 13%] generated/skbio.diversity.get_beta_diversity_metrics reading sources... [ 14%] generated/skbio.diversity.partial_beta_diversity reading sources... [ 14%] generated/skbio.io.ArgumentOverrideWarning reading sources... [ 14%] generated/skbio.io.BLAST7FormatError reading sources... [ 14%] generated/skbio.io.ClustalFormatError reading sources... [ 14%] generated/skbio.io.EMBLFormatError reading sources... [ 14%] generated/skbio.io.FASTAFormatError reading sources... [ 15%] generated/skbio.io.FASTQFormatError reading sources... [ 15%] generated/skbio.io.FileFormatError reading sources... [ 15%] generated/skbio.io.FormatIdentificationWarning reading sources... [ 15%] generated/skbio.io.GFF3FormatError reading sources... [ 15%] generated/skbio.io.GenBankFormatError reading sources... [ 15%] generated/skbio.io.IOSourceError reading sources... [ 15%] generated/skbio.io.LSMatFormatError reading sources... [ 16%] generated/skbio.io.NewickFormatError reading sources... 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[ 21%] generated/skbio.io.registry.IORegistry.create_format reading sources... [ 21%] generated/skbio.io.registry.IORegistry.get_reader reading sources... [ 21%] generated/skbio.io.registry.IORegistry.get_sniffer reading sources... [ 21%] generated/skbio.io.registry.IORegistry.get_writer reading sources... [ 21%] generated/skbio.io.registry.IORegistry.list_read_formats reading sources... [ 21%] generated/skbio.io.registry.IORegistry.list_write_formats reading sources... [ 21%] generated/skbio.io.registry.IORegistry.monkey_patch reading sources... [ 22%] generated/skbio.io.registry.IORegistry.read reading sources... [ 22%] generated/skbio.io.registry.IORegistry.sniff reading sources... [ 22%] generated/skbio.io.registry.IORegistry.write reading sources... [ 22%] generated/skbio.io.registry.InvalidRegistrationError reading sources... [ 22%] generated/skbio.io.registry.create_format reading sources... [ 22%] generated/skbio.io.registry.read reading sources... [ 23%] generated/skbio.io.registry.sniff reading sources... [ 23%] generated/skbio.io.registry.write reading sources... [ 23%] generated/skbio.io.util reading sources... [ 23%] generated/skbio.metadata.Interval reading sources... [ 23%] generated/skbio.metadata.Interval.__eq__ reading sources... [ 23%] generated/skbio.metadata.Interval.__init_subclass__ reading sources... [ 23%] generated/skbio.metadata.Interval.__ne__ reading sources... [ 24%] generated/skbio.metadata.Interval.drop reading sources... [ 24%] generated/skbio.metadata.IntervalMetadata reading sources... [ 24%] generated/skbio.metadata.IntervalMetadata.__copy__ reading sources... [ 24%] generated/skbio.metadata.IntervalMetadata.__deepcopy__ reading sources... [ 24%] generated/skbio.metadata.IntervalMetadata.__eq__ reading sources... [ 24%] generated/skbio.metadata.IntervalMetadata.__init_subclass__ reading sources... [ 25%] generated/skbio.metadata.IntervalMetadata.__ne__ reading sources... 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[ 85%] generated/../../build/plot_directive/generated/skbio-stats-ordination-OrdinationResults-plot-1.png copying images... [100%] user/assets/api-lifecycle.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 6 warnings. The HTML pages are in doc/build/html. /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.011492611219229506 and the largest is 16.021722090908206. warn( make[1]: Leaving directory '/<>' dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:217: cd /<>/.pybuild/cpython3_3.8_skbio/build; python3.8 -m nose -v test_compute_score_and_traceback_matrices (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_compute_score_and_traceback_matrices_invalid (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_compute_substitution_score (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_first_largest (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_custom_alphabet (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_custom_alphabet_nondegenerate_chars (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_dtype_mismatch (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_invalid_type (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_nucleotide (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_nucleotide_invalid_dtype (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_nucleotide_penalize_terminal_gaps (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_protein (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_protein_invalid_dtype (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_global_pairwise_align_protein_penalize_terminal_gaps (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_init_matrices_nw (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_init_matrices_sw (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_local_pairwise_align_custom_alphabet (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_local_pairwise_align_custom_alphabet_nondegenerate_chars (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_local_pairwise_align_invalid_type (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_local_pairwise_align_nucleotide (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_local_pairwise_align_protein (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_local_pairwise_align_type_mismatch (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_make_identity_substitution_matrix (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_nucleotide_aligners_use_substitution_matrices (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_traceback (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok test_invalid_type (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok test_kwargs_are_usable (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok test_same_as_using_StripedSmithWaterman_object_DNA (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok test_same_as_using_StripedSmithWaterman_object_Protein (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok test_type_mismatch (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok test__get_aligned_sequences (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok test_aligned_query_target_sequence (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok test_aligned_query_target_sequence_with_suppressed_sequences (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok test_is_zero_based_returns_true_if_index_base_is_zero (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok test_set_zero_based_changes_the_index_base (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok test_works_for_dot_and_square_bracket_access (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok test_align_with_N_in_nucleotide_sequence (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_distance_filter_is_used (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_gap_extend_penalty (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_gap_open_penalty (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_match_score (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_matrix_overrides_match_and_mismatch (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_mismatch_score (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_override_skip_babp (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_score_filter_is_used (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_score_only (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_suppress_sequences (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_arg_zero_index_changes_base_of_index_to_0_or_1 (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_lowercase_is_valid_sequence (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_object_is_reusable (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_protein_sequence_is_usable (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_regression_on_instantiation_arguments (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok test_dtype_mismatch_float (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_dtype_mismatch_rna (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_duplicate_index (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_empty_msa_with_positional_metadata_add_new_positions (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_empty_msa_with_positional_metadata_no_new_positions (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_index_type_change (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_invalid_dtype (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_invalid_minter (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_invalid_minter_index_reset_index_parameter_combos (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_minter_callable (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_multiindex_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_multiindex_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_multiindex_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_multiindex_minter_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_reset_index_bool_cast (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_reset_index_default_index (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_reset_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_reset_index_non_default_index (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok test_default_gap_char (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_different_dtype (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_mixed_gap_characters_as_majority (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_multiple_sequences (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_no_positions (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_single_sequence (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_ties (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_ties_with_gaps (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok test_bad_degenerate_mode (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_bad_gap_mode (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_bad_metric (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_column_with_degen_and_gap (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_degenerate_mode_error (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_degenerate_mode_nan (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_error_on_degenerate_w_nan_on_gap (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_gap_mode_error (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_gap_mode_ignore (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_gap_mode_include (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_gap_mode_include_gaps_treated_as_single_char (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_gap_mode_nan (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_shannon_entropy_dna (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_shannon_entropy_protein (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_shannon_entropy_rna (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok test_index_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok test_metadata_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok test_no_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok test_no_override_no_md (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok test_positional_metadata_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok test_sequence_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok test_sequence_override_same_seqs (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestContains) ... ok test_with_int_labels (skbio.alignment.tests.test_tabular_msa.TestContains) ... ok test_with_str_labels (skbio.alignment.tests.test_tabular_msa.TestContains) ... ok test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestCopy) ... ok test_with_index (skbio.alignment.tests.test_tabular_msa.TestCopy) ... ok test_with_sequences (skbio.alignment.tests.test_tabular_msa.TestCopy) ... ok test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestDeepCopy) ... ok test_with_index (skbio.alignment.tests.test_tabular_msa.TestDeepCopy) ... ok test_with_sequences (skbio.alignment.tests.test_tabular_msa.TestDeepCopy) ... ok test_dtype_mismatch_float (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_dtype_mismatch_rna (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_duplicate_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_empty_msa_with_positional_metadata_add_new_positions (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_empty_msa_with_positional_metadata_no_new_positions (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_from_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_from_tabular_msa_index_param_still_required (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_from_tabular_msa_with_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_index_object_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_index_object_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_index_type_change (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_invalid_dtype (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_invalid_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_invalid_minter (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_invalid_minter_index_reset_index_parameter_combos (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_minter_callable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_multiindex_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_multiindex_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_multiindex_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_multiindex_minter_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_multiple_sequences (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_non_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_reset_index_bool_cast (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_reset_index_default_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_reset_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_reset_index_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_reset_index_from_tabular_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_reset_index_non_default_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_reset_index_non_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_sequences_index_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_single_sequence (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok test_correct_dtype_absolute_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_correct_dtype_absolute_non_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_correct_dtype_relative_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_correct_dtype_relative_non_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_custom_gap_characters (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_default_behavior (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_invalid_axis_int (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_invalid_axis_str (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_no_positions_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_no_positions_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_tabular_msa.py:1653: RuntimeWarning: invalid value encountered in true_divide gap_freqs /= length ok test_no_sequences_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_no_sequences_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_position_axis_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_position_axis_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_position_axis_str_and_int_equivalent (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_relative_frequencies_precise (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_sequence_axis_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_sequence_axis_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_sequence_axis_str_and_int_equivalent (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_single_position_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_single_position_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_single_sequence_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_single_sequence_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok test_asburd_slice (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_bad_fancy_index (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_bad_scalar (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_bool_index_both_axes (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_bool_index_first_axis (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_bool_index_second_axis (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_bool_index_too_big (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_bool_index_too_small (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_empty_msa_slice (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_msa_slice_all_both_axes (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_msa_slice_all_first_axis (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_tuple_too_big (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_uses_iloc_not_loc (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok test_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestGetPosition) ... ok test_without_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestGetPosition) ... ok test_unhashable_object (skbio.alignment.tests.test_tabular_msa.TestHashable) ... ok test_unhashable_type (skbio.alignment.tests.test_tabular_msa.TestHashable) ... ok test_asburd_slice (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_bad_fancy_index (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_bad_scalar (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_bool_index_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_bool_index_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_bool_index_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_bool_index_too_big (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_bool_index_too_small (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_combo_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_combo_first_axis_only (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_combo_second_axis_only (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_combo_single_axis_natural (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_empty_msa_slice (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_entire_fancy_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_empty_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_empty_both_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_empty_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_empty_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_entire_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_entire_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_out_of_bound (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_out_of_bounds_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_out_of_bounds_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_standard_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_standard_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_fancy_standard_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_forced_axis_no_mutate (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_forced_axis_returns_copy (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_get_scalar_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_get_scalar_out_of_bound_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_get_scalar_out_of_bound_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_get_scalar_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_msa_slice_all_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_msa_slice_all_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_scalar_sliced_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_scalar_sliced_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_tuple_too_big (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok test_invalid_int (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok test_invalid_str (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok test_negative_int (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok test_negative_str (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok test_positive_int (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok test_positive_str (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok test_method_return_type (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_multiple_positions (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_multiple_positions_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_positions (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_positions_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_positions_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_positions_reverse_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_sequences_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_sequences_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_no_sequences_reverse_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_position_type (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_single_position (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_single_position_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_with_positional_metadata_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_with_positional_metadata_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok test_dtype_mismatch (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_duplicate_index_labels (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_inner (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_inner_no_index_overlap_with_positional_metadata_overlap (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_inner_no_positional_metadata_overlap (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_left (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_outer (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_right (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_strict (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_strict_failure_index_mismatch (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_how_strict_failure_positional_metadata_mismatch (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_ignores_metadata (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_invalid_how (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_invalid_other_type (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_no_metadata (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_no_positions (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_one_with_positions_one_without_positions (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_outer_join_on_per_sequence_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok test_asburd_slice (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_assertion_exists_for_future_failure_of_get_sequence_loc (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bad_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_tabular_msa.py:1192: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#deprecate-loc-reindex-listlike new_seqs = self._seqs.loc[l] ok test_bad_scalar (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bool_index_both_axes (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bool_index_first_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bool_index_nonscalar_bool_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bool_index_scalar_bool_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bool_index_second_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bool_index_too_big (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_bool_index_too_small (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_categorical_index_nonscalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_categorical_index_scalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_combo_both_axes (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_combo_first_axis_only (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_combo_second_axis_only (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_combo_single_axis_natural (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_complex_single_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_duplicate_index_nonscalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_duplicate_index_scalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_empty_msa_slice (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_fancy_index_missing_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_float_index_out_of_order_slice (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_forced_axis_no_mutate (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_forced_axis_returns_copy (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_label_not_exists (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_missing_first_nonscalar_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_msa_slice_all_both_axes (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_msa_slice_all_first_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_multiindex_complex (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_multiindex_complicated_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_multiindex_complicated_axis_empty_selection (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_multiindex_fancy_indexing_incomplete_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_non_multiindex_tuple (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_nonscalar_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_partial_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_tuple_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_tuple_too_big (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok test_repr (skbio.alignment.tests.test_tabular_msa.TestRepr) ... ok test_bool (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_empty_no_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_empty_with_labels (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_index_length_mismatch_index_object (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_index_length_mismatch_iterable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_invalid_dtype (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_invalid_index_scalar (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_invalid_minter_callable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_minter_and_index_both_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_missing_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_non_empty_no_labels_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_non_empty_with_labels_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_non_iterable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_non_unique_labels (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_not_monomorphic (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_unequal_length (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_unhashable_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_with_multiindex_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_with_multiindex_minter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_works_with_iterator (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_copy_constructor_respects_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_copy_constructor_state_override_with_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_copy_constructor_state_override_with_minter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_copy_constructor_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_copy_constructor_with_minter_and_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_copy_constructor_without_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_dtype (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_eq_and_ne (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_eq_constructed_from_different_iterables_compare_equal (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_eq_default_index_and_equivalent_provided_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_eq_ignores_minter_str_and_lambda (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_eq_minter_and_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_from_dict_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_from_dict_invalid_input (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_from_dict_multiple_sequences (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_from_dict_single_sequence (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_from_dict_to_dict_roundtrip (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_deleter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_getter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_getter_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_mixed_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_setter_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_setter_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_setter_non_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_setter_non_unique_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_setter_preserves_range_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_index_setter_tuples (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_iter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_len (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_mapping_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_minter_and_mapping_both_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_non_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_non_unique_existing_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_non_unique_new_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_to_multiindex_with_mapping (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_to_multiindex_with_minter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_with_mapping_callable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_with_mapping_dict_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_with_mapping_dict_subset (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reassign_index_with_mapping_dict_superset (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_reversed (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_shape (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_already_sorted (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_default_index_descending (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_empty_on_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_multiindex (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_multiindex_with_level (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_multiple_sequences_on_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_on_key_with_all_repeats (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_on_labels_with_some_repeats (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_on_unorderable_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_reverse_sorted (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_sort_single_sequence_on_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_to_dict_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_to_dict_duplicate_labels (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_to_dict_falsey_msa (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_to_dict_non_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok test_constructor_handles_missing_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_constructor_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_constructor_makes_shallow_copy_of_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_constructor_no_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_constructor_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_copy_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_copy_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_copy_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_deepcopy_memo_is_respected (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_deepcopy_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_deepcopy_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_deepcopy_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_eq (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_eq_handles_missing_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_eq_missing_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_has_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_metadata_deleter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_metadata_getter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_metadata_getter_no_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_metadata_setter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_metadata_setter_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_metadata_setter_makes_shallow_copy (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_ne (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok test_constructor_handles_missing_positional_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_invalid_positional_metadata_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_makes_shallow_copy_of_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_no_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_positional_metadata_len_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_with_positional_metadata_custom_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_with_positional_metadata_int64_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_with_positional_metadata_len_greater_than_one (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_with_positional_metadata_len_one (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_with_positional_metadata_len_zero (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_constructor_with_positional_metadata_multiple_columns (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_copy_positional_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_copy_positional_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_copy_preserves_range_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_copy_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_deepcopy_memo_is_respected (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_deepcopy_positional_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_deepcopy_positional_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_deepcopy_preserves_range_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_deepcopy_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_eq_basic (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_eq_from_different_source (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_eq_handles_missing_positional_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_eq_missing_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_has_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_ne_len_greater_than_zero (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_ne_len_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_ne_len_zero (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_deleter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_getter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_getter_no_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_getter_set_column_array (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_getter_set_column_series (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_setter_data_frame (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_setter_int64_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_setter_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_setter_len_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_setter_makes_shallow_copy (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_setter_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_positional_metadata_setter_pandas_consumable (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok test_ace (skbio.diversity.alpha.tests.test_ace.AceTests) ... ok test_ace_only_rare_singletons (skbio.diversity.alpha.tests.test_ace.AceTests) ... ok test_berger_parker_d (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_brillouin_d (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_dominance (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_doubles (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_enspie (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_esty_ci (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_fisher_alpha (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_goods_coverage (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_heip_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_kempton_taylor_q (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_margalef (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_mcintosh_d (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_mcintosh_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_menhinick (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_michaelis_menten_fit (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_observed_otus (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_osd (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_pielou_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_base.py:793: RuntimeWarning: invalid value encountered in double_scalars return shannon(counts, base=np.e) / np.log(observed_otus(counts)) /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_base.py:869: RuntimeWarning: invalid value encountered in true_divide freqs = counts / counts.sum() /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_base.py:793: RuntimeWarning: divide by zero encountered in log return shannon(counts, base=np.e) / np.log(observed_otus(counts)) ok test_robbins (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_shannon (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_simpson (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_simpson_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_singles (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_strong (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok test_chao1 (skbio.diversity.alpha.tests.test_chao1.Chao1Tests) ... ok test_chao1_ci (skbio.diversity.alpha.tests.test_chao1.Chao1Tests) ... ok test_chao1_var (skbio.diversity.alpha.tests.test_chao1.Chao1Tests) ... ok test_faith_pd (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_faith_pd_all_observed (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_faith_pd_extra_tips (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_faith_pd_invalid_input (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_faith_pd_minimal (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_faith_pd_none_observed (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_faith_pd_qiime_tiny_test (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_faith_pd_root_not_observed (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok test_gini_index (skbio.diversity.alpha.tests.test_gini.GiniTests) ... ok test_lorenz_curve (skbio.diversity.alpha.tests.test_gini.GiniTests) ... ok test_lorenz_curve_integrator (skbio.diversity.alpha.tests.test_gini.GiniTests) ... ok test_expand_counts (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok test_get_interval_for_r_new_otus (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok lladser_ci estimate using defaults contains p with 95% prob ... ok lladser_ci estimate using f=3 contains p with 95% prob ... ok test_lladser_ci_from_r (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok test_lladser_ci_from_r_invalid_input (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok lladser_ci returns nan if sample is too short to make an estimate ... ok test_lladser_ci_series_exact (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok test_lladser_ci_series_random (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok lladser_pe returns point estimates within the expected variance ... ok test_lladser_point_estimates (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok test_lladser_point_estimates_invalid_r (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok test_invalid_input (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_extra_tips (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_minimal_trees (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_otus_out_of_order (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_root_not_observed (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_unifrac (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_unifrac_identity (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_unifrac_non_overlapping (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_unifrac_pycogent_adapted (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_unifrac_symmetry (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_unweighted_unifrac_zero_counts (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_extra_tips (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_minimal_trees (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_normalized_root_not_observed (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_otus_out_of_order (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_root_not_observed (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_branch_correction (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_identity (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_identity_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_non_overlapping (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_non_overlapping_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_pycogent_adapted (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_symmetry (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_symmetry_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_zero_counts (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_weighted_unifrac_zero_counts_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok test_block_beta_diversity (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_decorator.py:254: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. warnings.warn('%s is deprecated as of scikit-bio version %s, and ' ok test_block_compute (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_block_kwargs (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_block_party_notree (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_block_party_tree (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_generate_id_blocks (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_map (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_pairs_to_compute_rids_are_cids (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_pairs_to_compute_rids_are_not_cids (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_pairs_to_compute_rids_overlap_cids (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_reduce (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok test_empty (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_faith_pd (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_input_types (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_invalid_input (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_invalid_input_phylogenetic (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_no_ids (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_observed_otus (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_optimized (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_single_count_vector (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok test_alt_pairwise_func (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_braycurtis (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_empty (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_euclidean (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_input_types (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_invalid_input (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_invalid_input_phylogenetic (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_qualitative_bug_issue_1549 (skbio.diversity.tests.test_driver.BetaDiversityTests) ... /usr/lib/python3/dist-packages/sklearn/utils/validation.py:595: DataConversionWarning: Data with input dtype int64 was converted to bool by check_pairwise_arrays. warnings.warn(msg, DataConversionWarning) ok test_scipy_kwargs (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_unweighted_unifrac (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_weighted_unifrac (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_weighted_unifrac_normalized (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok test_get_alpha_diversity_metrics (skbio.diversity.tests.test_driver.MetricGetters) ... ok test_get_alpha_diversity_metrics_sorted (skbio.diversity.tests.test_driver.MetricGetters) ... ok test_get_beta_diversity_metrics (skbio.diversity.tests.test_driver.MetricGetters) ... ok test_get_beta_diversity_metrics_sorted (skbio.diversity.tests.test_driver.MetricGetters) ... ok test_duplicate_pairs (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_decorator.py:254: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. warnings.warn('%s is deprecated as of scikit-bio version %s, and ' ok test_duplicate_transpose_pairs (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_euclidean (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_id_pairs_as_iterable (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_pairs_not_subset (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_self_self_pair (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_unusable_metric (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_unweighted_unifrac_partial (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_weighted_unifrac_partial_full (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok test_validate_counts_matrix (skbio.diversity.tests.test_util.ValidationTests) ... ok test_validate_counts_matrix_negative_counts (skbio.diversity.tests.test_util.ValidationTests) ... ok test_validate_counts_matrix_suppress_cast (skbio.diversity.tests.test_util.ValidationTests) ... ok test_validate_counts_matrix_unequal_lengths (skbio.diversity.tests.test_util.ValidationTests) ... ok test_validate_counts_vector (skbio.diversity.tests.test_util.ValidationTests) ... ok test_validate_counts_vector_invalid_input (skbio.diversity.tests.test_util.ValidationTests) ... /usr/lib/python3/dist-packages/numpy/lib/type_check.py:279: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison return imag(x) == 0 ok test_validate_otu_ids_and_tree (skbio.diversity.tests.test_util.ValidationTests) ... ok test_validate_otu_ids_and_tree_invalid_input (skbio.diversity.tests.test_util.ValidationTests) ... ok test_vectorize_counts_and_tree (skbio.diversity.tests.test_util.ValidationTests) ... ok test_custom_phred_offset (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_empty_qual_str (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_illumina13_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_illumina18_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_missing_variant_and_phred_offset (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_sanger_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_solexa_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_unrecognized_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_variant_and_phred_offset_provided (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok test_custom_phred_offset (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_illumina13_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_illumina18_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_missing_variant_and_phred_offset (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_no_phred_scores (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_sanger_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_solexa_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_unrecognized_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_variant_and_phred_offset_provided (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok test_empty_sequence (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok test_empty_str_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok test_missing_quality_scores (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok test_multi_char_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok test_newline_character_in_description_newline_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok test_newline_character_in_id_whitespace_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok test_no_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok test_seq_num_just_right (skbio.io.format.tests.test_base.TestGetNthSequence) ... ok test_seq_num_too_big (skbio.io.format.tests.test_base.TestGetNthSequence) ... ok test_seq_num_too_small (skbio.io.format.tests.test_base.TestGetNthSequence) ... ok test_description_only (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok test_id_and_description (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok test_id_only (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok test_no_id_or_description (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok test_custom_and_default_passed_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_custom_valid_multi_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_custom_valid_single_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_default_valid_multi_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_default_valid_single_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_different_data_in_same_column (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_no_columns_passed_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_valid_minimal (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_valid_nan_handling (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_wrong_amount_of_columns_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_wrong_column_name_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok test_negatives (skbio.io.format.tests.test_blast7.TestBLAST7Sniffer) ... ok test_positives (skbio.io.format.tests.test_blast7.TestBLAST7Sniffer) ... ok test_custom_valid_minimal (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_custom_valid_mixed_nans (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_custom_valid_multi_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_custom_valid_single_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_default_valid_mixed_output (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_default_valid_multi_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_default_valid_single_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_differing_fields_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_legacy9_valid_mixed_nans (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_no_data_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_unrecognized_field_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_wrong_amount_of_columns_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok test_check_lengh (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok test_delete_trailing_number (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok test_is_clustal_seq_line (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok test_label_line_parser (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok test_clustal_sniffer_invalid_files (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_clustal_sniffer_valid_files (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_duplicate_labels (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_invalid_lengths (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_invalid_tabular_msa_to_clustal_and_clustal_to_tabular_msa (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_no_constructor (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_tabular_msa_to_clustal_with_bad_input (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_tabular_msa_to_clustal_with_empty_input (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_valid_tabular_msa_to_clustal_and_clustal_to_tabular_msa (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok test_embl_to_gb (skbio.io.format.tests.test_embl.Convertertest) ... ok test_gb_to_embl (skbio.io.format.tests.test_embl.Convertertest) ... ok test_constructed_sequences (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_embl_to_dna (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_embl_to_generator (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_embl_to_generator_single (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_embl_to_protein (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_embl_to_rna (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_embl_to_sequence (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_feature_level_products (skbio.io.format.tests.test_embl.ReaderTests) ... ok Verify to have a section for each embl ID ... ok Testing no protein support for embl ... ok test_parse_assembly (skbio.io.format.tests.test_embl.ReaderTests) ... ok test for a wrong assembly line ... ok Parse ID record (first line of embl format) ... ok test_parse_id_invalid (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_parse_reference (skbio.io.format.tests.test_embl.ReaderTests) ... ok test_roundtrip_dna (skbio.io.format.tests.test_embl.RoundtripTests) ... ok test_roundtrip_generator (skbio.io.format.tests.test_embl.RoundtripTests) ... ok test_roundtrip_rna (skbio.io.format.tests.test_embl.RoundtripTests) ... ok test_roundtrip_sequence (skbio.io.format.tests.test_embl.RoundtripTests) ... ok test_negatives (skbio.io.format.tests.test_embl.SnifferTests) ... ok test_positives (skbio.io.format.tests.test_embl.SnifferTests) ... ok test_dna_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok test_generator_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok test_protein_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok test_rna_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok Test writing feature level products ... ok test_sequence_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok Serialize a complex dbsource entry ... ok test_serialize_id (skbio.io.format.tests.test_embl.WriterTests) ... ok test_empty (skbio.io.format.tests.test_emptyfile.TestEmptyFile) ... ok test_not_empty (skbio.io.format.tests.test_emptyfile.TestEmptyFile) ... ok test_fasta_to_any_sequence (skbio.io.format.tests.test_fasta.ReaderTests) ... ok test_fasta_to_generator_invalid_files (skbio.io.format.tests.test_fasta.ReaderTests) ... ok test_fasta_to_generator_valid_files (skbio.io.format.tests.test_fasta.ReaderTests) ... ok test_fasta_to_tabular_msa (skbio.io.format.tests.test_fasta.ReaderTests) ... ok test_fasta_to_tabular_msa_no_constructor (skbio.io.format.tests.test_fasta.ReaderTests) ... ok test_roundtrip_biological_sequences (skbio.io.format.tests.test_fasta.RoundtripTests) ... ok test_roundtrip_generators (skbio.io.format.tests.test_fasta.RoundtripTests) ... ok test_roundtrip_tabular_msa (skbio.io.format.tests.test_fasta.RoundtripTests) ... ok test_negatives (skbio.io.format.tests.test_fasta.SnifferTests) ... ok test_positives (skbio.io.format.tests.test_fasta.SnifferTests) ... ok test_any_sequence_to_fasta (skbio.io.format.tests.test_fasta.WriterTests) ... ok test_any_sequences_to_fasta (skbio.io.format.tests.test_fasta.WriterTests) ... ok test_generator_to_fasta_invalid_input (skbio.io.format.tests.test_fasta.WriterTests) ... ok test_generator_to_fasta_mixed_qual_scores (skbio.io.format.tests.test_fasta.WriterTests) ... ok test_generator_to_fasta_no_qual (skbio.io.format.tests.test_fasta.WriterTests) ... ok test_generator_to_fasta_with_qual (skbio.io.format.tests.test_fasta.WriterTests) ... ok test_conversion (skbio.io.format.tests.test_fastq.TestConversions) ... ok test_fastq_to_generator_invalid_files_all_variants (skbio.io.format.tests.test_fastq.TestReaders) ... ok test_fastq_to_generator_invalid_files_illumina (skbio.io.format.tests.test_fastq.TestReaders) ... ok test_fastq_to_generator_solexa (skbio.io.format.tests.test_fastq.TestReaders) ... ok test_fastq_to_generator_valid_files (skbio.io.format.tests.test_fastq.TestReaders) ... ok test_fastq_to_sequence (skbio.io.format.tests.test_fastq.TestReaders) ... ok test_fastq_to_tabular_msa (skbio.io.format.tests.test_fastq.TestReaders) ... ok test_fastq_to_tabular_msa_no_constructor (skbio.io.format.tests.test_fastq.TestReaders) ... ok test_illumina_sniffed (skbio.io.format.tests.test_fastq.TestSniffer) ... ok test_negatives (skbio.io.format.tests.test_fastq.TestSniffer) ... ok test_positives (skbio.io.format.tests.test_fastq.TestSniffer) ... ok test_generator_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters) ... ok test_generator_to_fastq_no_qual (skbio.io.format.tests.test_fastq.TestWriters) ... ok test_sequence_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters) ... ok test_tabular_msa_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters) ... ok test_genbank_to_dna (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_genbank_to_generator (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_genbank_to_generator_single (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_genbank_to_protein (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_genbank_to_rna (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_genbank_to_sequence (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_parse_locus (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_parse_locus_invalid (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_parse_reference (skbio.io.format.tests.test_genbank.ReaderTests) ... ok test_roundtrip_dna (skbio.io.format.tests.test_genbank.RoundtripTests) ... ok test_roundtrip_generator (skbio.io.format.tests.test_genbank.RoundtripTests) ... ok test_roundtrip_protein (skbio.io.format.tests.test_genbank.RoundtripTests) ... ok test_roundtrip_rna (skbio.io.format.tests.test_genbank.RoundtripTests) ... ok test_roundtrip_sequence (skbio.io.format.tests.test_genbank.RoundtripTests) ... ok test_negatives (skbio.io.format.tests.test_genbank.SnifferTests) ... ok test_positives (skbio.io.format.tests.test_genbank.SnifferTests) ... ok test_dna_protein_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ok test_generator_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ok test_rna_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ok test_sequence_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ok test_serialize_locus (skbio.io.format.tests.test_genbank.WriterTests) ... ok test_gff3_to_dna (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_gff3_to_generator (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_gff3_to_generator_empty (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_gff3_to_interval_metadata (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_gff3_to_interval_metadata_bad (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_gff3_to_interval_metadata_empty (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_gff3_to_sequence (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_parse_attr (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_parse_record_raise (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_yield_record (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_yield_record_raise (skbio.io.format.tests.test_gff3.ReaderTests) ... ok test_roundtrip_interval_metadata (skbio.io.format.tests.test_gff3.RoundtripTests) ... ok test_roundtrip_interval_metadata_generator (skbio.io.format.tests.test_gff3.RoundtripTests) ... ok test_negative (skbio.io.format.tests.test_gff3.SnifferTests) ... ok test_positive (skbio.io.format.tests.test_gff3.SnifferTests) ... ok test_dna_to_gff3 (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_interval_metadata_to_gff3 (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_interval_metadata_to_gff3_empty (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_interval_metadata_to_gff3_escape (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_interval_metadata_to_gff3_missing_field (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_interval_metadata_to_gff3_multiple_values (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_interval_metadata_to_gff3_sub_region (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_raise_subregion (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_sequence_to_gff3 (skbio.io.format.tests.test_gff3.WriterTests) ... ok test_read_invalid_files (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok test_read_valid_files (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok test_roundtrip_read_write (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok test_write (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok test_match_csv (skbio.io.format.tests.test_lsmat.SnifferTests) ... ok test_match_tsv (skbio.io.format.tests.test_lsmat.SnifferTests) ... ok test_no_match (skbio.io.format.tests.test_lsmat.SnifferTests) ... ok test_newick_sniffer_invalid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok test_newick_sniffer_valid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok test_newick_to_tree_node_convert_underscores (skbio.io.format.tests.test_newick.TestNewick) ... ok test_newick_to_tree_node_invalid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok test_newick_to_tree_node_valid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok test_roundtrip (skbio.io.format.tests.test_newick.TestNewick) ... ok test_tree_node_to_newick (skbio.io.format.tests.test_newick.TestNewick) ... ok test_read_invalid_files (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok test_read_valid_files (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok test_roundtrip_read_write (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok test_write (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok test_matches_and_nonmatches (skbio.io.format.tests.test_ordination.SnifferTests) ... ok test_phylip_to_tabular_msa_invalid_files (skbio.io.format.tests.test_phylip.TestReaders) ... ok test_phylip_to_tabular_msa_no_constructor (skbio.io.format.tests.test_phylip.TestReaders) ... ok test_phylip_to_tabular_msa_valid_files (skbio.io.format.tests.test_phylip.TestReaders) ... ok test_negatives (skbio.io.format.tests.test_phylip.TestSniffer) ... ok test_positives (skbio.io.format.tests.test_phylip.TestSniffer) ... ok test_write (skbio.io.format.tests.test_phylip.TestWriters) ... ok test_write_invalid_alignment (skbio.io.format.tests.test_phylip.TestWriters) ... ok test_qseq_sniffer_invalid_files (skbio.io.format.tests.test_qseq.TestQSeqSniffer) ... ok test_qseq_sniffer_valid_files (skbio.io.format.tests.test_qseq.TestQSeqSniffer) ... ok test_invalid_files (skbio.io.format.tests.test_qseq.TestQSeqToGenerator) ... ok test_valid_files (skbio.io.format.tests.test_qseq.TestQSeqToGenerator) ... ok test_invalid_files (skbio.io.format.tests.test_qseq.TestQSeqToSequences) ... ok test_valid_files (skbio.io.format.tests.test_qseq.TestQSeqToSequences) ... ok test_parse_loc_str (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok test_parse_loc_str_invalid (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok test_parse_section_default (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok test_serialize_location (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok test_data_type_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_differing_data_lengths_gc_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_differing_data_lengths_gr_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_differing_sequence_lengths_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_duplicate_gc_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_duplicate_gr_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_duplicate_sequence_names_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_empty_file_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_malformed_data_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_malformed_gc_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_malformed_gf_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_malformed_gr_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_malformed_gs_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_missing_footer_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_missing_header_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_multiple_msa_file (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_no_constructor_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_nonexistent_gr_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_nonexistent_gs_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_duplicate_tree_id_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_extensive (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_extensive_mixed (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_handles_missing_reference_items (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_maintains_order (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_metadata_only (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_minimal (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_missing_reference_number_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_mixed_runon_references (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_multi_line_tree_no_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_multi_line_tree_with_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_multiple_multi_line_trees (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_multiple_references (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_multiple_trees (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_no_data (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_rna (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_runon_gf (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_runon_gs (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_runon_references (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_single_tree_with_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_single_tree_without_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_to_msa_different_padding (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_with_blank_lines (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockholm_with_whitespace_only_lines (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_stockhom_single_reference (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_unsupported_constructor_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok test_negatives (skbio.io.format.tests.test_stockholm.TestStockholmSniffer) ... ok test_positives (skbio.io.format.tests.test_stockholm.TestStockholmSniffer) ... ok test_gc_wrong_dataframe_item_length_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_gr_wrong_dataframe_item_length_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_invalid_reference_tag_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_data_only (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_empty (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_extensive (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_minimal (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_multiple_references (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_multiple_trees (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_nonstring_values (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_single_reference (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_single_tree (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_msa_to_stockholm_single_tree_as_dict (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_rn_data_not_in_dict_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_rn_not_list_of_refs_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_data_only (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_empty (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_extensive (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_minimal (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_missing_references (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_multiple_references (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_multiple_trees (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_nonstring_index_values (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_single_reference (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_round_trip_single_tree (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_unoriginal_gc_feature_names_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_unoriginal_gr_feature_names_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_unoriginal_index_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok test_attributes (skbio.io.tests.test_iosources.TestCompressor) ... ok test_can_read (skbio.io.tests.test_iosources.TestCompressor) ... ok test_can_write (skbio.io.tests.test_iosources.TestCompressor) ... ok test_get_reader (skbio.io.tests.test_iosources.TestCompressor) ... ok test_get_writer (skbio.io.tests.test_iosources.TestCompressor) ... ok test_attributes (skbio.io.tests.test_iosources.TestIOSource) ... ok test_can_read (skbio.io.tests.test_iosources.TestIOSource) ... ok test_can_write (skbio.io.tests.test_iosources.TestIOSource) ... ok test_get_reader (skbio.io.tests.test_iosources.TestIOSource) ... ok test_get_writer (skbio.io.tests.test_iosources.TestIOSource) ... ok test_add_duplicate_format (skbio.io.tests.test_registry.TestFormatAndIORegistry) ... ok test_many_read_formats (skbio.io.tests.test_registry.TestListReadFormats) ... ok test_no_read_formats (skbio.io.tests.test_registry.TestListReadFormats) ... ok test_one_read_format (skbio.io.tests.test_registry.TestListReadFormats) ... ok test_many_write_formats (skbio.io.tests.test_registry.TestListWriteFormats) ... ok test_no_write_formats (skbio.io.tests.test_registry.TestListWriteFormats) ... ok test_one_write_format (skbio.io.tests.test_registry.TestListWriteFormats) ... ok test_create_format_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok test_read_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok test_sniff_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok test_write_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok test_no_readers_writers (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok test_read_kwargs_passed (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok test_readers_only (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok test_readers_writers (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok test_write_kwargs_passed (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok test_writers_no_default_format (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok test_writers_only (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok test_file_sentinel_converted_to_none (skbio.io.tests.test_registry.TestRead) ... ok test_file_sentinel_converted_to_none_generator (skbio.io.tests.test_registry.TestRead) ... ok test_file_sentinel_generator_many (skbio.io.tests.test_registry.TestRead) ... ok test_file_sentinel_many (skbio.io.tests.test_registry.TestRead) ... ok test_file_sentinel_pass_none (skbio.io.tests.test_registry.TestRead) ... ok test_file_sentinel_pass_none_generator (skbio.io.tests.test_registry.TestRead) ... ok test_format_and_into_are_none (skbio.io.tests.test_registry.TestRead) ... ok test_format_is_none (skbio.io.tests.test_registry.TestRead) ... ok test_into_is_none (skbio.io.tests.test_registry.TestRead) ... ok test_into_is_none_and_no_generator_reader (skbio.io.tests.test_registry.TestRead) ... ok test_into_is_none_real_file (skbio.io.tests.test_registry.TestRead) ... ok test_io_kwargs_passed (skbio.io.tests.test_registry.TestRead) ... ok test_non_default_encoding (skbio.io.tests.test_registry.TestRead) ... ok test_non_default_newline (skbio.io.tests.test_registry.TestRead) ... ok test_passing_newline_raises_error (skbio.io.tests.test_registry.TestRead) ... ok test_read_empty_file_gen_with_format (skbio.io.tests.test_registry.TestRead) ... ok test_read_kwargs_passed_and_override (skbio.io.tests.test_registry.TestRead) ... ok test_read_kwargs_passed_generator (skbio.io.tests.test_registry.TestRead) ... ok test_read_with_binary_encoding (skbio.io.tests.test_registry.TestRead) ... ok test_read_with_illegal_encoding (skbio.io.tests.test_registry.TestRead) ... ok test_reader_does_not_exist (skbio.io.tests.test_registry.TestRead) ... ok test_reader_exists_real_file (skbio.io.tests.test_registry.TestRead) ... ok test_reader_exists_with_verify_false (skbio.io.tests.test_registry.TestRead) ... ok test_reader_exists_with_verify_true (skbio.io.tests.test_registry.TestRead) ... ok test_that_encoding_is_used (skbio.io.tests.test_registry.TestRead) ... ok test_warning_raised (skbio.io.tests.test_registry.TestRead) ... ok test_get_reader_no_match (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok test_get_reader_when_only_writer_exists (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok test_mistype_reader_registration (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok test_register_reader_on_many (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok test_register_reader_over_existing (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok test_register_reader_over_existing_override (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok test_get_sniffer_no_match (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok test_mistype_sniffer_registration (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok test_register_sniffer_on_many (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok test_register_sniffer_over_existing (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok test_register_sniffer_over_existing_override (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok test_sniffer_warns_on_exception (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok test_get_writer_no_match (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok test_get_writer_when_only_reader_exists (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok test_mistype_writer_registration (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok test_register_writer_on_many (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok test_register_writer_over_existing (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok test_register_writer_over_existing_override (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok test_binary_fall_through (skbio.io.tests.test_registry.TestSniff) ... ok test_binary_sniffer (skbio.io.tests.test_registry.TestSniff) ... ok test_many_matches (skbio.io.tests.test_registry.TestSniff) ... ok test_no_matches (skbio.io.tests.test_registry.TestSniff) ... ok test_non_default_encoding (skbio.io.tests.test_registry.TestSniff) ... ok test_non_default_newline (skbio.io.tests.test_registry.TestSniff) ... ok test_one_match (skbio.io.tests.test_registry.TestSniff) ... ok test_passing_newline_raises_error (skbio.io.tests.test_registry.TestSniff) ... ok test_position_not_mutated_fileish (skbio.io.tests.test_registry.TestSniff) ... ok test_position_not_mutated_real_file (skbio.io.tests.test_registry.TestSniff) ... ok test_sniff_gzip (skbio.io.tests.test_registry.TestSniff) ... ok test_sniff_with_encoding_errors (skbio.io.tests.test_registry.TestSniff) ... ok test_sniff_with_errors_in_sniffer (skbio.io.tests.test_registry.TestSniff) ... ok test_sniff_with_illegal_encoding (skbio.io.tests.test_registry.TestSniff) ... ok test_text_skip_binary (skbio.io.tests.test_registry.TestSniff) ... ok test_text_skip_text (skbio.io.tests.test_registry.TestSniff) ... ok test_text_sniffer (skbio.io.tests.test_registry.TestSniff) ... ok test_that_encoding_is_used (skbio.io.tests.test_registry.TestSniff) ... ok test_file_sentinel_converted_to_none (skbio.io.tests.test_registry.TestWrite) ... ok test_file_sentinel_many (skbio.io.tests.test_registry.TestWrite) ... ok test_file_sentinel_pass_none (skbio.io.tests.test_registry.TestWrite) ... ok test_io_kwargs_passed (skbio.io.tests.test_registry.TestWrite) ... ok test_non_default_encoding (skbio.io.tests.test_registry.TestWrite) ... ok test_non_default_newline (skbio.io.tests.test_registry.TestWrite) ... ok test_that_encoding_is_used (skbio.io.tests.test_registry.TestWrite) ... ok test_that_newline_is_used (skbio.io.tests.test_registry.TestWrite) ... ok test_write_binary_format (skbio.io.tests.test_registry.TestWrite) ... ok test_write_with_illegal_encoding (skbio.io.tests.test_registry.TestWrite) ... ok test_writer_does_not_exist (skbio.io.tests.test_registry.TestWrite) ... ok test_writer_exists (skbio.io.tests.test_registry.TestWrite) ... ok test_writer_exists_real_file (skbio.io.tests.test_registry.TestWrite) ... ok test_writer_passed_kwargs (skbio.io.tests.test_registry.TestWrite) ... ok test_open (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok test_open_empty_iterable (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok test_open_invalid_iterable (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok test_open_with_newline (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok test_open_write_mode (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok test_open_invalid_compression (skbio.io.tests.test_util.TestOpen) ... ok test_open_invalid_mode (skbio.io.tests.test_util.TestOpen) ... ok test_open_invalid_source (skbio.io.tests.test_util.TestOpen) ... ok test_open_invalid_source_compression (skbio.io.tests.test_util.TestOpen) ... ok test_open_invalid_source_encoding (skbio.io.tests.test_util.TestOpen) ... ok test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_binary_compression_none (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_gc_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_gc_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_gc_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_gc_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_gc_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_underclose_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_underclose_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_underclose_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_binary_compression_none (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_gc_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_gc_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_gc_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_gc_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_gc_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_underclose_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_underclose_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_underclose_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_binary_compression_none (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_gc_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_gc_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_gc_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_gc_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_gc_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_underclose_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_underclose_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_underclose_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_binary_compression_none (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_gc_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_gc_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_gc_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_gc_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_gc_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_underclose_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_underclose_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_underclose_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_binary_compression_none (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_gc_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_gc_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_gc_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_gc_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_gc_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_underclose_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_underclose_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_underclose_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_binary_compression_none (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_gc_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_gc_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_gc_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_gc_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_gc_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_underclose_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_underclose_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_underclose_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests. test_open_binary (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok test_open_bz2 (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok test_open_encoding (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok test_open_gzip (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok test_open_binary (skbio.io.tests.test_util.TestWriteBytesIO) ... ok test_open_bz2 (skbio.io.tests.test_util.TestWriteBytesIO) ... ok test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteBytesIO) ... ok test_open_encoding (skbio.io.tests.test_util.TestWriteBytesIO) ... ok test_open_gzip (skbio.io.tests.test_util.TestWriteBytesIO) ... ok test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteBytesIO) ... ok test_open_binary (skbio.io.tests.test_util.TestWriteFilepath) ... ok test_open_bz2 (skbio.io.tests.test_util.TestWriteFilepath) ... ok test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteFilepath) ... ok test_open_encoding (skbio.io.tests.test_util.TestWriteFilepath) ... ok test_open_gzip (skbio.io.tests.test_util.TestWriteFilepath) ... ok test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteFilepath) ... ok test_open_binary (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok test_open_bz2 (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok test_open_encoding (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok test_open_gzip (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok test_open_binary (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok test_open_bz2 (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok test_open_encoding (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok test_open_gzip (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok test_edge_cases (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok test_empty (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok test_find (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok test_public_interval (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok test_traverse (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok test_update (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok test_count (skbio.metadata.tests.test_intersection.LotsaTestCase) ... ok test_find (skbio.metadata.tests.test_intersection.LotsaTestCase) ... ok test_max_dist (skbio.metadata.tests.test_intersection.LotsaTestCase) ... ok test_left (skbio.metadata.tests.test_intersection.NeighborTestCase) ... ok test_right (skbio.metadata.tests.test_intersection.NeighborTestCase) ... ok test_toomany (skbio.metadata.tests.test_intersection.NeighborTestCase) ... ok test_downstream (skbio.metadata.tests.test_intersection.UpDownStreamTestCase) ... ok test_n (skbio.metadata.tests.test_intersection.UpDownStreamTestCase) ... ok test_upstream (skbio.metadata.tests.test_intersection.UpDownStreamTestCase) ... ok test_delete_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok test_delete_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok test_drop (skbio.metadata.tests.test_interval.TestInterval) ... ok test_eq (skbio.metadata.tests.test_interval.TestInterval) ... ok test_get_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok test_get_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok test_get_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok test_get_on_dropped (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_bad_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_bad_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_bounds_scrambled (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_default (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_empty_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_generator (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_iterables (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_no_interval_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok test_init_out_of_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok test_repr (skbio.metadata.tests.test_interval.TestInterval) ... ok test_set_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok test_set_bounds_bad (skbio.metadata.tests.test_interval.TestInterval) ... ok test_set_delete_on_dropped (skbio.metadata.tests.test_interval.TestInterval) ... ok test_set_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok test_set_fuzzy_bad (skbio.metadata.tests.test_interval.TestInterval) ... ok test_set_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok test_set_metadata_bad (skbio.metadata.tests.test_interval.TestInterval) ... ok test_add_eq_start_end_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_add_eq_upper_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_add_gt_upper_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_concat (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_concat_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_copy (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_copy_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_deepcopy (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_deepcopy_memo_is_respected (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_drop (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_drop_all (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_drop_negate (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok Test query and drop methods on duplicate Intervals. ... ok test_duplicate_bounds (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_eq_ne (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_init (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_init_copy_from (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_init_copy_from_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_init_copy_from_error (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_init_copy_from_shallow_copy (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_init_upper_bound_lt_lower_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_merge (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_merge_to_unbounded (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_merge_unbounded_to_bounded (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_merge_unequal_upper_bounds (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_ne_diff_bounds (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_num_interval_features (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query_attribute (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query_interval (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query_interval_only (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query_interval_upper_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query_metadata_only (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_query_no_hits (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_repr (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_reverse (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_sort (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_upper_bound_is_none (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok test_assert_valid_bound (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok test_assert_valid_bound_wrong_type (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok test_assert_valid_bound_wrong_value (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok test_assert_valid_fuzzy (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok test_assert_valid_fuzzy_wrong_type (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok test_assert_valid_fuzzy_wrong_value (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok test_constructor_empty_interval_metadata_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_handles_missing_interval_metadata_efficiently (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_interval_bounds_larger_than_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_interval_metadata_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_interval_metadata_len_0 (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_interval_metadata_len_mismatch (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_interval_metadata_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_invalid (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_makes_shallow_copy_of_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_no_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_copy_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_copy_interval_metadata_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_copy_interval_metadata_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_deepcopy_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_deepcopy_interval_metadata_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_deepcopy_interval_metadata_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_deepcopy_memo_is_respected (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_eq_basic (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_eq_handles_missing_positional_metadata_efficiently (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_eq_populated_differently (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_has_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_deleter (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_deleter_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_getter (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_getter_no_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_setter (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_setter_empty_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_setter_interval_bounds_larger_than_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_setter_invalid_type (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_setter_len_mismatch (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_setter_makes_copy (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_interval_metadata_setter_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_ne (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_ne_diff_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_ne_only_one_is_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok test_constructor_handles_missing_metadata_efficiently (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_constructor_invalid_type (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_constructor_makes_shallow_copy_of_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_constructor_no_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_constructor_with_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_copy_metadata_empty (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_copy_metadata_none (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_copy_with_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_deepcopy_memo_is_respected (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_deepcopy_metadata_empty (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_deepcopy_metadata_none (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_deepcopy_with_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_eq (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_eq_handles_missing_metadata_efficiently (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_eq_missing_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_has_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_metadata_deleter (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_metadata_getter (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_metadata_getter_no_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_metadata_setter (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_metadata_setter_invalid_type (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_metadata_setter_makes_shallow_copy (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_ne (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok test_constructor_handles_missing_positional_metadata_efficiently (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_invalid_positional_metadata_type (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_makes_shallow_copy_of_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_no_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_positional_metadata_len_mismatch (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_with_positional_metadata_custom_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_with_positional_metadata_int64_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_with_positional_metadata_len_greater_than_one (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_with_positional_metadata_len_one (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_with_positional_metadata_len_zero (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_constructor_with_positional_metadata_multiple_columns (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_copy_positional_metadata_empty (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_copy_positional_metadata_none (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_copy_preserves_range_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_copy_with_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_deepcopy_memo_is_respected (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_deepcopy_positional_metadata_empty (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_deepcopy_positional_metadata_none (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_deepcopy_preserves_range_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_deepcopy_with_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_eq_basic (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_eq_from_different_source (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_eq_handles_missing_positional_metadata_efficiently (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_eq_missing_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_has_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_ne_len_greater_than_zero (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_ne_len_mismatch (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_ne_len_zero (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_deleter (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_getter (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_getter_no_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_getter_set_column_array (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_getter_set_column_series (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_setter_data_frame (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_setter_int64_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_setter_invalid_type (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_setter_len_mismatch (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_setter_makes_shallow_copy (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_setter_none (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_positional_metadata_setter_pandas_consumable (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok test_empty_sequences (skbio.sequence.tests.test_distance.TestHamming) ... ok test_length_mismatch (skbio.sequence.tests.test_distance.TestHamming) ... ok test_maximum_distance (skbio.sequence.tests.test_distance.TestHamming) ... ok test_mid_range_distance (skbio.sequence.tests.test_distance.TestHamming) ... ok test_minimum_distance (skbio.sequence.tests.test_distance.TestHamming) ... ok test_non_sequence (skbio.sequence.tests.test_distance.TestHamming) ... ok test_return_type (skbio.sequence.tests.test_distance.TestHamming) ... ok test_sequence_subclass (skbio.sequence.tests.test_distance.TestHamming) ... ok test_sequences_with_metadata (skbio.sequence.tests.test_distance.TestHamming) ... ok test_single_character_sequences (skbio.sequence.tests.test_distance.TestHamming) ... ok test_type_mismatch (skbio.sequence.tests.test_distance.TestHamming) ... ok test_default_kwargs (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_differing_length_seqs (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_empty_sequences (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_entirely_different_sequences (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_k_less_than_one_error (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_no_kmers_found (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_non_sequence_error (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_nondefault_k (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_one_empty_sequence (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_overlap_false (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_return_type (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_same_sequence (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_type_mismatch_error (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_with_metadata_sanity (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_with_sequence_subclass (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok test_cannot_subclass (skbio.sequence.tests.test_dna.TestDNA) ... ok test_transcribe (skbio.sequence.tests.test_dna.TestDNA) ... ok test_transcribe_does_not_modify_input (skbio.sequence.tests.test_dna.TestDNA) ... ok test_transcribe_preserves_all_metadata (skbio.sequence.tests.test_dna.TestDNA) ... ok test_eq (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_from_ncbi_invalid_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_from_ncbi_valid_table_ids (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_init_invalid_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_init_varied_equivalent_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_name (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_ne (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_reading_frames (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_repr (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_str (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_default_behavior (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_invalid_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_preserves_metadata (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_reading_frame_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_reading_frame_non_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_six_frames (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_six_frames_preserves_metadata (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_start_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_start_no_accidental_mutation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_start_no_start_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_start_with_start_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_stop_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_stop_no_stop_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_stop_with_stop_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_trim_to_cds (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_translate_varied_genetic_codes (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok test_alphabet (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_default_gap_char (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_default_gap_must_be_in_gap_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_definite_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_definites (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_degap (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_degenerate_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_degenerate_map (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_degenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_degenerates_and_definites_share (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_degenerates_must_expand_to_valid_definites (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_expand_degenerates_all_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_expand_degenerates_no_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_expand_degenerates_with_metadata (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_find_motifs (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_find_motifs_no_motif (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_gap_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_gap_chars_and_definites_share (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_gap_chars_and_degenerates_share (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_gaps (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_has_definites (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_has_degenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_has_gaps (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_has_nondegenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_decorator.py:254: DeprecationWarning: has_nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to has_definites warnings.warn('%s is deprecated as of scikit-bio version %s, and ' ok test_init_default_parameters (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_lowercase_all_lowercase (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_lowercase_byte_ownership (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_lowercase_invalid_keys (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_lowercase_mixed_case (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_lowercase_no_validation (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_nondefault_parameters (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_valid_empty_sequence (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_valid_multiple_character_sequence (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_valid_single_character_sequence (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_validate_parameter_multiple_characters (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_init_validate_parameter_single_character (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_instantiation_with_no_implementation (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_nondegenerate_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerate_chars is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definite_chars warnings.warn('%s is deprecated as of scikit-bio version %s, and ' ok test_nondegenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definites warnings.warn('%s is deprecated as of scikit-bio version %s, and ' ok test_repr (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_to_regex_no_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_to_regex_with_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok test_complement_map (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_complement_with_reverse_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_complement_with_reverse_non_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_complement_without_reverse_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_complement_without_reverse_non_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_definite_chars (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_degenerate_map (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_gc_frequency_and_gc_content (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_instantiation_with_no_implementation (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_is_reverse_complement_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_is_reverse_complement_metadata_ignored (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_is_reverse_complement_non_reverse_complements (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_is_reverse_complement_type_mismatch (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_is_reverse_complement_varied_types (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_motif_purine_run (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_motif_pyrimidine_run (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_nondegenerate_chars (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_repr (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_reverse_complement (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_genetic_code_object (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_invalid_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_ncbi_table_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_passes_parameters_through (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_preserves_metadata (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_six_frames_genetic_code_object (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_six_frames_invalid_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_six_frames_ncbi_table_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_six_frames_passes_parameters_through (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_translate_six_frames_preserves_metadata (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok test_alphabet (skbio.sequence.tests.test_protein.TestProtein) ... ok test_cannot_subclass (skbio.sequence.tests.test_protein.TestProtein) ... ok test_definite_chars (skbio.sequence.tests.test_protein.TestProtein) ... ok test_degenerate_map (skbio.sequence.tests.test_protein.TestProtein) ... ok test_has_stops (skbio.sequence.tests.test_protein.TestProtein) ... ok test_motif_n_glycosylation (skbio.sequence.tests.test_protein.TestProtein) ... ok test_nondegenerate_chars (skbio.sequence.tests.test_protein.TestProtein) ... ok test_repr (skbio.sequence.tests.test_protein.TestProtein) ... ok test_stop_chars (skbio.sequence.tests.test_protein.TestProtein) ... ok test_stops (skbio.sequence.tests.test_protein.TestProtein) ... ok test_cannot_subclass (skbio.sequence.tests.test_rna.TestRNA) ... ok test_reverse_transcribe (skbio.sequence.tests.test_rna.TestRNA) ... ok test_reverse_transcribe_does_not_modify_input (skbio.sequence.tests.test_rna.TestRNA) ... ok test_reverse_transcribe_preserves_all_metadata (skbio.sequence.tests.test_rna.TestRNA) ... ok test_arbitrary_metric (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_default_metric_matches_hamming (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_default_metric_with_metadata (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_invalid_return_type (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_mungeable_inputs_to_sequence (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_mungeable_inputs_to_sequence_subclass (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_munging_invalid_characters_to_self_type (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_munging_invalid_type_to_self_type (skbio.sequence.tests.test_sequence.TestDistance) ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 test_return_type_coercion (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_scipy_hamming_metric_with_metadata (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_sequence_type_mismatch (skbio.sequence.tests.test_sequence.TestDistance) ... ok test_as_slice_if_single_index (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_bad_how (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_default_how (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_inner_missing (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_inner_simple (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_on_bad_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_on_empty_iterator (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_one_seq_has_none_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_outer_missing (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_outer_simple (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_strict_fail (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_strict_many (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_concat_strict_simple (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_contains (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_contains_sequence_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_copy_preserves_read_only_flag_on_bytes (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_copy_with_metadata_deep (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_copy_with_metadata_shallow (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_copy_without_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_count (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_count_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_and_ne (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_interval_metadata_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_positional_metadata_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_sequence_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_sequences_from_different_sources_compare_equal (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_sequences_with_metadata_compare_equal (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_sequences_without_metadata_compare_equal (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_eq_type_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_find_with_regex (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_find_with_regex_ignore (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_find_with_regex_ignore_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_find_with_regex_ignore_no_difference (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_find_with_regex_no_groups (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_find_with_regex_string_as_input (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_frequencies_chars_varied_type (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_frequencies_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py:1819: RuntimeWarning: invalid value encountered in true_divide obs_counts = obs_counts / len(self) ok test_frequencies_equivalent_to_kmer_frequencies_k_of_1 (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_frequencies_invalid_chars (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_frequencies_observed_chars (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_frequencies_passing_observed_chars_equivalent_to_default (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_frequencies_specified_chars (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_drops_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_empty_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_gives_new_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_boolean_vector_has_qual (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_boolean_vector_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_empty_indices_empty_seq_no_pos_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_empty_indices_non_empty_seq_no_pos_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_int_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_int_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_invalid (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_iterable_of_mixed_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_iterable_of_mixed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_numpy_index_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_numpy_index_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_slice_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_slice_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_tuple_of_mixed_no_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_tuple_of_mixed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_getitem_with_tuple_of_mixed_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_hash (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_index (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_index_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_default_parameters (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_from_contiguous_sequence_bytes_view (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_from_non_descendant_sequence_object (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_from_noncontiguous_sequence_bytes_view (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_from_sequence_object (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_invalid_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 test_init_multiple_character_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_no_copy_of_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_nondefault_parameters (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_init_single_character_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_is_single_index (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_contiguous_boolean_vector (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_contiguous_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_contiguous_iterable_slices (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_contiguous_with_invert (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_contiguous_with_max_length (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_different_sequences (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_different_sequences_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_empty_sequence_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_invalid_k (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_invalid_k_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_with_overlap (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_kmers_with_overlap_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_iter_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_kmer_frequencies (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_kmer_frequencies_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_kmer_frequencies_floating_point_precision (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_kmer_frequencies_relative (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_len (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_lowercase_array_key (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_lowercase_mungeable_key (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_match_frequency (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_match_frequency_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_match_frequency_relative (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_match_frequency_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_matches (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_matches_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_matches_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_mismatch_frequence_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_mismatch_frequency (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_mismatch_frequency_relative (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_mismatch_frequency_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_mismatches (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_mismatches_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_mismatches_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_bytestring_return_bytes (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_bytestring_unicode_out_of_ascii_range (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_invalid_bool_array (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_invalid_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_invalid_iterable (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_invalid_string (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_valid_bool_array (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_valid_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_valid_iterable (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_munge_to_index_array_valid_string (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_nonzero (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_observed_chars_property (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_does_not_mutate_original (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_index_in_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_invalid_char_error (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_invalid_char_for_type_error (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_iterable_slices (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_non_single_character_error (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_sanity (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_with_bytes (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_with_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_replace_with_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_repr (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_reversed_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_reversed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_sequence_numpy_compatibility (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_single_index_to_slice (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_slice_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_str (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_values_property (skbio.sequence.tests.test_sequence.TestSequence) ... ok test_constructor_empty_interval_metadata_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_handles_missing_interval_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_interval_bounds_larger_than_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_interval_metadata_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_interval_metadata_len_0 (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_interval_metadata_len_mismatch (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_interval_metadata_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_invalid (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_makes_shallow_copy_of_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_no_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_copy_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_copy_interval_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_copy_interval_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_deepcopy_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_deepcopy_interval_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_deepcopy_interval_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_eq_basic (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_eq_handles_missing_positional_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_eq_populated_differently (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_has_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_deleter (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_deleter_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_getter (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_getter_no_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_setter (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_setter_empty_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_setter_interval_bounds_larger_than_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_setter_invalid_type (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_setter_len_mismatch (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_setter_makes_copy (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_interval_metadata_setter_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_ne (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_ne_diff_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_ne_only_one_is_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok test_constructor_handles_missing_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_constructor_invalid_type (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_constructor_makes_shallow_copy_of_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_constructor_no_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_constructor_with_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_copy_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_copy_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_copy_with_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_deepcopy_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_deepcopy_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_deepcopy_with_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_eq (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_eq_handles_missing_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_eq_missing_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_has_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_metadata_deleter (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_metadata_getter (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_metadata_getter_no_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_metadata_setter (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_metadata_setter_invalid_type (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_metadata_setter_makes_shallow_copy (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_ne (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok test_constructor_handles_missing_positional_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_invalid_positional_metadata_type (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_makes_shallow_copy_of_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_positional_metadata_len_mismatch (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_with_positional_metadata_custom_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_with_positional_metadata_int64_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_with_positional_metadata_len_greater_than_one (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_with_positional_metadata_len_one (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_with_positional_metadata_len_zero (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_constructor_with_positional_metadata_multiple_columns (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_copy_positional_metadata_empty (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_copy_positional_metadata_none (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_copy_preserves_range_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_copy_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_deepcopy_positional_metadata_empty (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_deepcopy_positional_metadata_none (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_deepcopy_preserves_range_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_deepcopy_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_eq_basic (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_eq_from_different_source (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_eq_handles_missing_positional_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_eq_missing_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_ne_len_greater_than_zero (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_ne_len_mismatch (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_ne_len_zero (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_deleter (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_getter (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_getter_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_getter_set_column_array (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_getter_set_column_series (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_setter_data_frame (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_setter_int64_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_setter_invalid_type (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_setter_len_mismatch (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_setter_makes_shallow_copy (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_setter_none (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_positional_metadata_setter_pandas_consumable (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok test_no_permutations (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok test_no_ties (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok test_ties (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok test_unequal_group_sizes (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok test_preprocess_input_raises_error (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok test_preprocess_input_with_valid_input (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok test_run_monte_carlo_stats_invalid_permutations (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok test_run_monte_carlo_stats_no_permutations (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok test_run_monte_carlo_stats_with_permutations (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok test_contains (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_copy (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_data (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_dtype (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_eq (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_asymmetric (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_duplicate_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_empty_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_missing_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_missing_ids_strict_false (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_no_filtering (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_reorder (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_single_id (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_filter_subset (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_asymmetric_data (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_empty (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_no_key (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_non_hollow_data (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_scipy_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_single (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_skbio_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_with_key (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_with_key_and_keys (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_from_iterable_with_keys (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_getitem_by_id (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_getitem_by_id_pair (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_getitem_ndarray_indexing (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_getslice (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_ids_invalid_input (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_index (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_init_from_dm (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_init_invalid_input (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_init_no_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_init_non_hollow_dm (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_ne (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_plot_default (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_plot_no_default (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_png (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_redundant_form (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_repr_png (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_repr_svg (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_shape (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_size (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_str (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_svg (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_to_data_frame_1x1 (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_to_data_frame_3x3 (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_to_data_frame_default_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_transpose (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_validate_invalid_dtype (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok test_condensed_form (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_eq (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_empty (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_no_key (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_scipy_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_single (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_skbio_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_validate_asym (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_validate_equal_valid_data (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_validate_false (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_validate_false_non_symmetric (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_validate_non_hollow (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_with_key (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_with_key_and_keys (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_from_iterable_with_keys (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_init_from_condensed_form (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_init_invalid_input (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_init_nans (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_permute_condensed (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_permute_not_condensed (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_to_series_1x1 (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_to_series_2x2 (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_to_series_4x4 (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_to_series_default_ids (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok test_constructor (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok test_default_usage (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok test_ids (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok test_invalid_input (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok test_large_matrix_for_symmetry (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok test_random_fn (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok test_bioenv_all_columns_explicit (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_all_columns_implicit (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_different_column_order (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_duplicate_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_missing_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_missing_distance_matrix_ids (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_nans (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_no_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_no_data_frame (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_no_distance_matrix (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_no_side_effects (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_nonnumeric_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_single_column (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_bioenv_vegan_example (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_scale_multiple_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_scale_no_variance (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_scale_single_column (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok test_comparing_same_matrices (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_distance_matrix_instances_as_input (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_distance_matrix_instances_with_lookup (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_distance_matrix_instances_with_reordering_and_nonmatching (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_invalid_distance_matrix (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_invalid_input (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_negative_correlation (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_no_side_effects (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_no_variation_pearson (skbio.stats.distance.tests.test_mantel.MantelTests) ... /usr/lib/python3/dist-packages/scipy/stats/stats.py:3399: PearsonRConstantInputWarning: An input array is constant; the correlation coefficent is not defined. warnings.warn(PearsonRConstantInputWarning()) ok test_no_variation_spearman (skbio.stats.distance.tests.test_mantel.MantelTests) ... /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2534: RuntimeWarning: invalid value encountered in true_divide c /= stddev[:, None] /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2535: RuntimeWarning: invalid value encountered in true_divide c /= stddev[None, :] /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:901: RuntimeWarning: invalid value encountered in greater return (a < x) & (x < b) /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:901: RuntimeWarning: invalid value encountered in less return (a < x) & (x < b) /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:1892: RuntimeWarning: invalid value encountered in less_equal cond2 = cond0 & (x <= _a) ok test_one_sided_greater (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_one_sided_less (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_statistic_same_across_alternatives_and_permutations (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_two_sided (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_vegan_example (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_zero_permutations (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok test_array_like_input (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_id_lookup (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_lookup_with_array_like (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_missing_ids_in_lookup (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_mixed_input_types (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_no_matching_ids (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_nonmatching_ids_strict_true (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_reordered_and_nonmatching_distance_matrices (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_reordered_distance_matrices (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_shape_mismatch (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok test_duplicate_dms (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_duplicate_labels (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_filepaths_as_input (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_id_lookup (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_many_filepaths_as_input (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_minimal_compatible_input (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_minimal_compatible_input_with_labels (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_mixed_input_types (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_na_p_value (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_reordered_distance_matrices (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_strict (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_too_few_dms (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_wrong_number_of_labels (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok test_call_no_permutations (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok test_call_no_ties (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok test_call_ties (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok test_call_unequal_group_sizes (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok test_centroid_normal (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok test_centroids_eq_groups (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269621 and the largest is 16.5872013747859. warn( ok test_centroids_mixedgroups (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395208 and the largest is 20.90315427793891. warn( ok test_centroids_null (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:188: RuntimeWarning: invalid value encountered in true_divide proportion_explained = eigvals / sum_eigenvalues /usr/lib/python3/dist-packages/scipy/stats/stats.py:3235: RuntimeWarning: invalid value encountered in true_divide f = msb / msw ok the expected result here was calculated by hand ... ok test_confirm_betadispr_results (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780576 and the largest is 2.7077929489469263. warn( ok test_hdmedians (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok test_median_normal (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok test_mismatched_group (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok test_no_permuations (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok test_not_distance_matrix (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok test_single_group (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok test_dm_too_small (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_gen_lists (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_get_dist (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_hommola_cospeciation_asymmetric (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_hommola_cospeciation_no_sig (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_hommola_cospeciation_sig (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_hommola_vs_mantel (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_host_interaction_not_equal (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_interaction_too_few (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_par_interaction_not_equal (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_permutations_too_few (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_zero_permutations (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok test_Y_values (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok test_all_zero_row (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok test_scaling (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok test_shape (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok test_scaling1 (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAResults1) ... ok test_scaling2 (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAResults1) ... ok test_negative (skbio.stats.ordination.tests.test_correspondence_analysis.TestCAErrors) ... ok In scaling 1, chi^2 distance among rows (samples) is equal to ... ok In scaling 2, chi^2 distance among columns (features) is ... ok test_scaling1 (skbio.stats.ordination.tests.test_correspondence_analysis.TestCAResults) ... ok test_scaling2 (skbio.stats.ordination.tests.test_correspondence_analysis.TestCAResults) ... ok test_errors (skbio.stats.ordination.tests.test_correspondence_analysis.TestChiSquareDistance) ... ok Some random numbers. ... ok A tiny example from Legendre & Legendre 1998, p. 285. ... ok test_get_plot_point_colors_categorical_column (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_get_plot_point_colors_invalid_input (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_get_plot_point_colors_no_df_or_column (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_get_plot_point_colors_numeric_column (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_plot_categorical_legend (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_plot_no_metadata (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_plot_with_categorical_metadata_and_plot_options (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_plot_with_invalid_axis_labels (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_plot_with_numeric_metadata_and_plot_options (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_png (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_repr_png (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_repr_svg (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_str (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_svg (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_validate_plot_axes_invalid_input (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_validate_plot_axes_valid_input (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok test_book_example_dataset (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok test_extensive (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok test_fsvd (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok test_fsvd_inplace (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok test_invalid_input (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok test_simple (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok test_from_seralized_results (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 test_mismatching_samples (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 test_not_a_pcoa (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 Test against a reference implementation from R's ape package ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 test_pcoa_biplot_subset_input (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 test_shape (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAErrors) ... ok test_scaling1 (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAResults) ... ok test_scaling2 (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAResults) ... ok test_biplot_score (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAResults_biplot_score) ... ok test_center_distance_matrix_inplace (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_corr (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_corr_shape_mismatch (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_e_matrix (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_e_matrix_inplace (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_f_matrix (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_f_matrix_inplace (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_mean_and_std (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_mean_and_std_no_mean_no_std (skbio.stats.ordination.tests.test_util.TestUtils) ... ok test_ancom_alpha (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_alt_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_alternative_test (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_basic_counts (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_basic_counts_swapped (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_basic_proportions (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_duplicate_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_1_group (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_alpha (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_group_unique (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_groups (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_missing (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_multiple_groups (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_negative (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_not_implemented_multiple_comparisons_correction (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_size_mismatch (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_tau (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_theta (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_type (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_fail_zeros (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_letter_categories (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_multiple_comparisons (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_multiple_groups (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_no_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_no_signal (skbio.stats.tests.test_composition.AncomTests) ... /usr/lib/python3/dist-packages/scipy/stats/stats.py:3235: RuntimeWarning: invalid value encountered in double_scalars f = msb / msw /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/composition.py:1113: RuntimeWarning: invalid value encountered in less W = (logratio_mat < alpha).sum(axis=1) ok test_ancom_noncontiguous (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_normal_data (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_percentile_order_unimportant (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_percentile_out_of_range (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_percentiles_alt_categories (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_percentiles_iterator (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_percentiles_swapped (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_tau (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_theta (skbio.stats.tests.test_composition.AncomTests) ... ok test_ancom_unbalanced (skbio.stats.tests.test_composition.AncomTests) ... ok test_holm_bonferroni (skbio.stats.tests.test_composition.AncomTests) ... ok test_alr (skbio.stats.tests.test_composition.CompositionTests) ... ok test_alr_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok test_centralize (skbio.stats.tests.test_composition.CompositionTests) ... ok test_closure (skbio.stats.tests.test_composition.CompositionTests) ... ok test_closure_warning (skbio.stats.tests.test_composition.CompositionTests) ... ok test_clr (skbio.stats.tests.test_composition.CompositionTests) ... ok test_clr_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok test_ilr (skbio.stats.tests.test_composition.CompositionTests) ... ok test_ilr_basis (skbio.stats.tests.test_composition.CompositionTests) ... ok test_ilr_basis_isomorphism (skbio.stats.tests.test_composition.CompositionTests) ... ok test_ilr_basis_one_dimension_error (skbio.stats.tests.test_composition.CompositionTests) ... ok test_ilr_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok test_ilr_inv_basis (skbio.stats.tests.test_composition.CompositionTests) ... ok test_ilr_inv_basis_one_dimension_error (skbio.stats.tests.test_composition.CompositionTests) ... ok test_inner (skbio.stats.tests.test_composition.CompositionTests) ... ok test_multiplicative_replacement (skbio.stats.tests.test_composition.CompositionTests) ... ok test_perturb (skbio.stats.tests.test_composition.CompositionTests) ... ok test_perturb_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok test_power (skbio.stats.tests.test_composition.CompositionTests) ... ok test_sbp_basis_elementwise (skbio.stats.tests.test_composition.CompositionTests) ... ok test_sbp_basis_gram_schmidt (skbio.stats.tests.test_composition.CompositionTests) ... ok get_trajectories returns the results of all categories ... ok get_trajectories returns the results of the provided category ... ok get_trajectories returns the correct weighted results ... ok test_to_file (skbio.stats.tests.test_gradient.CategoryResultsTests) ... ok test_get_trajectories (skbio.stats.tests.test_gradient.FirstDifferenceGradientANOVATests) ... ok test_get_trajectories_weighted (skbio.stats.tests.test_gradient.FirstDifferenceGradientANOVATests) ... ok test_to_file (skbio.stats.tests.test_gradient.GradientANOVAResultsTests) ... ok Should raise a NotImplementedError as this is a base class ... ok Should raise a NotImplementedError in usual execution as this is ... ok Should raise a RuntimeError if the user call _get_group_trajectories ... ok Should raise a NotImplementedError as this is a base class ... ok Correctly initializes the class attributes ... ok Raises an error with erroneous inputs ... ok Correctly generates the groups for trajectory_categories ... ok test_make_groups_natural_sorting (skbio.stats.tests.test_gradient.GradientANOVATests) ... ok Correctly normalizes the samples between coords and metadata_map ... ok Raises an error if coords and metadata_map does not have samples in ... ok Correctly performs the check before running ANOVA ... ok Correctly weights the vectors ... ok Raises an error with erroneous inputs ... ok test_weight_by_vector_single_element (skbio.stats.tests.test_gradient.GradientTests) ... ok test_to_file (skbio.stats.tests.test_gradient.GroupResultsTests) ... ok test_get_trajectories (skbio.stats.tests.test_gradient.TrajectoryGradientANOVATests) ... ok test_get_trajectories_weighted (skbio.stats.tests.test_gradient.TrajectoryGradientANOVATests) ... ok test_get_trajectories (skbio.stats.tests.test_gradient.WindowDifferenceGradientANOVATests) ... ok test_get_trajectories_weighted (skbio.stats.tests.test_gradient.WindowDifferenceGradientANOVATests) ... ok test_no_truncation (skbio.stats.tests.test_misc.PPrintStrsTests) ... ok test_non_default_delimiter_and_suffix (skbio.stats.tests.test_misc.PPrintStrsTests) ... ok test_truncation (skbio.stats.tests.test_misc.PPrintStrsTests) ... ok test__calculate_power (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__calculate_power_curve_alpha (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__calculate_power_curve_default (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__calculate_power_curve_ratio (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__calculate_power_curve_ratio_error (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__calculate_power_n (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__check_nans_clean_list (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__check_nans_list_nan (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__check_nans_nan (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__check_str_error (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__compare_distributions_all_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__compare_distributions_draw_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__compare_distributions_matched_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__compare_distributions_multiple_returns (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__compare_distributions_sample_counts_error (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__draw_paired_samples (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__get_min_size_relaxed (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__get_min_size_strict (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__identify_sample_groups (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test__identify_sample_groups_not_strict (skbio.stats.tests.test_power.PowerAnalysisTest) ... SKIP: FIXME: Skip failing test. See https://github.com/biocore/scikit-bio/issues/1681 test_check_nans_num (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_check_nans_str (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_check_sample_power_inputs (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_check_subsample_power_inputs_counts (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_check_subsample_power_inputs_matched_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_check_subsample_power_inputs_ratio (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_check_subsample_power_inputs_test (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_confidence_bound_alpha (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_confidence_bound_axis_none (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_confidence_bound_default (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_confidence_bound_df (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_confidence_bound_nan (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_paired_subsample_fewer (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_paired_subsample_undefined (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_paired_subsamples_break (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_paired_subsamples_default (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_paired_subsamples_not_strict (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_subsample_paired_power (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_subsample_paired_power_multi_p (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_subsample_power_counts (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_subsample_power_defaults (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_subsample_power_matches (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok test_subsample_power_multi_p (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok /usr/lib/python3/dist-packages/nose/util.py:453: DeprecationWarning: inspect.getargspec() is deprecated since Python 3.0, use inspect.signature() or inspect.getfullargspec() inspect.getargspec(func) test_binf_is_none (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok test_isubsample_simple (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok test_max_lt_zero (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok test_min_gt_max (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok test_min_lt_zero (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok test_per_sample_sequences_complex (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok test_per_sample_sequences_min_seqs (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok test_subsample_counts_invalid_input (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok test_subsample_counts_nonrandom (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok test_subsample_counts_with_replacement (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok test_subsample_counts_with_replacement_equal_n (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok test_subsample_counts_without_replacement (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok test_build_trees (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok test_filter_clades (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok test_majority_rule (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok test_majority_rule_multiple_trees (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok test_majority_rule_tree_node_class (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok test_walk_clades (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok test_compute_collapsed_dm (skbio.tree.tests.test_nj.NjTests) ... ok test_compute_q (skbio.tree.tests.test_nj.NjTests) ... ok test_lowest_index (skbio.tree.tests.test_nj.NjTests) ... ok test_nj_dm1 (skbio.tree.tests.test_nj.NjTests) ... ok test_nj_dm2 (skbio.tree.tests.test_nj.NjTests) ... ok test_nj_dm3 (skbio.tree.tests.test_nj.NjTests) ... ok test_nj_error (skbio.tree.tests.test_nj.NjTests) ... ok test_nj_trivial (skbio.tree.tests.test_nj.NjTests) ... ok test_nj_zero_branch_length (skbio.tree.tests.test_nj.NjTests) ... ok test_pair_members_to_new_node (skbio.tree.tests.test_nj.NjTests) ... ok test_pair_members_to_new_node_zero_branch_length (skbio.tree.tests.test_nj.NjTests) ... ok Get the distance from a node to its ancestor ... ok Adopt a node! ... ok Get all the ancestors ... ok Append a node to a tree ... ok Make some ascii trees ... ok test_ascii_art_three_children (skbio.tree.tests.test_tree.TreeTests) ... ok Assign IDs to the tree ... ok assign_ids and index_tree should assign the same IDs ... ok test_bifurcate (skbio.tree.tests.test_tree.TreeTests) ... ok test_bifurcate_with_subclass (skbio.tree.tests.test_tree.TreeTests) ... ok test_bug_issue_1416 (skbio.tree.tests.test_tree.TreeTests) ... ok compare_rfd should return the Robinson Foulds distance ... ok compare_subsets should return the fraction of shared subsets ... ok test_compare_tip_distances (skbio.tree.tests.test_tree.TreeTests) ... ok test_compare_tip_distances_no_common_tips (skbio.tree.tests.test_tree.TreeTests) ... ok test_compare_tip_distances_sample (skbio.tree.tests.test_tree.TreeTests) ... ok test_compare_tip_distances_single_common_tip (skbio.tree.tests.test_tree.TreeTests) ... ok copy a tree ... ok Get node counts ... ok test_create_caches_duplicate_tip_names (skbio.tree.tests.test_tree.TreeTests) ... ok Calculate descending branch_length ... ok Get the distance between two nodes ... ok test_distance_nontip (skbio.tree.tests.test_tree.TreeTests) ... ok Extend a few nodes ... ok Extend on the empty case should work ... ok Find a node in a tree ... ok test_find_all (skbio.tree.tests.test_tree.TreeTests) ... ok Find nodes by a function ... ok Find a node by id ... ok First implementation did not force the cache to be at the root ... ok test_from_taxonomy (skbio.tree.tests.test_tree.TreeTests) ... ok get_max_distance should get max tip distance across tree ... ok Basic TreeNode operations should work as expected ... ok Test if has children ... ok index_tree should produce correct index and node map ... ok index_tree handles single node tree ... ok test_invalidate_attr_caches (skbio.tree.tests.test_tree.TreeTests) ... ok test_invalidate_lookup_caches (skbio.tree.tests.test_tree.TreeTests) ... ok see if we're at the root or not ... ok see if we're a tip or not ... ok iter wraps children ... ok Test level order traversal of the tree ... ok test_linkage_matrix (skbio.tree.tests.test_tree.TreeTests) ... ok TreeNode lowestCommonAncestor should return LCA for set of tips ... ok Get neighbors of a node ... ok returns observed nodes counts given vector of otu observation counts ... ok Pop off a node ... ok Pre and post order traversal of the tree ... ok test_pre_and_postorder_no_children (skbio.tree.tests.test_tree.TreeTests) ... ok Collapse single descendent nodes ... ok Collapse single descendent nodes ... ok test_prune_nested_single_descendent (skbio.tree.tests.test_tree.TreeTests) ... ok test_prune_root_single_desc (skbio.tree.tests.test_tree.TreeTests) ... ok Remove nodes ... ok Remove nodes by function ... ok Remove a node by index ... ok Get the root! ... ok Form a new root ... ok Root at the midpoint ... ok test_root_at_midpoint_no_lengths (skbio.tree.tests.test_tree.TreeTests) ... ok test_root_at_midpoint_tie (skbio.tree.tests.test_tree.TreeTests) ... ok set_max_distance sets MaxDistTips across tree ... ok Corresponds to #1223 ... ok Corresponds to #1077 ... ok Shear the nodes ... ok test_shear_prune_parent_dropped (skbio.tree.tests.test_tree.TreeTests) ... ok test_shuffle_complex (skbio.tree.tests.test_tree.TreeTests) ... ok test_shuffle_invalid_iter (skbio.tree.tests.test_tree.TreeTests) ... ok test_shuffle_n_2 (skbio.tree.tests.test_tree.TreeTests) ... ok test_shuffle_n_none (skbio.tree.tests.test_tree.TreeTests) ... ok test_shuffle_names (skbio.tree.tests.test_tree.TreeTests) ... ok test_shuffle_raises (skbio.tree.tests.test_tree.TreeTests) ... ok Get the siblings ... ok subset should return set of leaves that descends from node ... ok subsets should return all subsets descending from a set ... ok Get support value of a node. ... ok Test getting specifc tip distances with tipToTipDistances ... ok test_tip_tip_distances_missing_length (skbio.tree.tests.test_tree.TreeTests) ... ok test_tip_tip_distances_no_length (skbio.tree.tests.test_tree.TreeTests) ... ok test_tip_tip_distances_non_tip_endpoints (skbio.tree.tests.test_tree.TreeTests) ... ok Tip traversal of tree ... ok See issue #1509 ... ok Convert a tree to arrays ... ok test_to_array_attrs (skbio.tree.tests.test_tree.TreeTests) ... ok test_to_array_nan_length_value (skbio.tree.tests.test_tree.TreeTests) ... ok test_to_taxonomy (skbio.tree.tests.test_tree.TreeTests) ... ok test_to_taxonomy_filter (skbio.tree.tests.test_tree.TreeTests) ... ok Unpack an internal node. ... ok Unpack internal nodes of a tree by a function. ... ok Do an unrooted_copy ... ok test_get_indentation_level (skbio.util.tests.test_decorator.TestBase) ... ok test_update_docstring (skbio.util.tests.test_decorator.TestBase) ... ok test_fails_on_instance (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok test_matches_classmethod (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok test_passes_args_kwargs (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok test_works_on_class (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok test_getter_only (skbio.util.tests.test_decorator.TestClassProperty) ... ok test_deprecation_warning (skbio.util.tests.test_decorator.TestDeprecated) ... ok test_function_docstring (skbio.util.tests.test_decorator.TestDeprecated) ... ok test_function_output (skbio.util.tests.test_decorator.TestDeprecated) ... /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_decorator.py:254: DeprecationWarning: f is deprecated as of scikit-bio version 0.1.0, and will be removed in version 0.1.4. You should now use skbio.g(). warnings.warn('%s is deprecated as of scikit-bio version %s, and ' ok test_function_signature (skbio.util.tests.test_decorator.TestDeprecated) ... ok test_missing_kwarg (skbio.util.tests.test_decorator.TestDeprecated) ... ok test_function_docstring (skbio.util.tests.test_decorator.TestExperimental) ... ok test_function_output (skbio.util.tests.test_decorator.TestExperimental) ... ok test_function_signature (skbio.util.tests.test_decorator.TestExperimental) ... ok test_missing_kwarg (skbio.util.tests.test_decorator.TestExperimental) ... ok test_doc_inherited (skbio.util.tests.test_decorator.TestOverrides) ... ok test_doc_not_inherited (skbio.util.tests.test_decorator.TestOverrides) ... ok test_raises_when_missing (skbio.util.tests.test_decorator.TestOverrides) ... ok test_function_docstring (skbio.util.tests.test_decorator.TestStable) ... ok test_function_output (skbio.util.tests.test_decorator.TestStable) ... ok test_function_signature (skbio.util.tests.test_decorator.TestStable) ... ok test_missing_kwarg (skbio.util.tests.test_decorator.TestStable) ... ok test_invalid_n (skbio.util.tests.test_misc.CardinalToOrdinalTests) ... ok test_valid_range (skbio.util.tests.test_misc.CardinalToOrdinalTests) ... ok test_even_split (skbio.util.tests.test_misc.ChunkStrTests) ... ok test_invalid_n (skbio.util.tests.test_misc.ChunkStrTests) ... ok test_no_split (skbio.util.tests.test_misc.ChunkStrTests) ... ok test_uneven_split (skbio.util.tests.test_misc.ChunkStrTests) ... ok test_callable (skbio.util.tests.test_misc.ResolveKeyTests) ... ok test_index (skbio.util.tests.test_misc.ResolveKeyTests) ... ok test_wrong_type (skbio.util.tests.test_misc.ResolveKeyTests) ... ok test_safe_md5 (skbio.util.tests.test_misc.SafeMD5Tests) ... ok test_all_duplicates (skbio.util.tests.test_misc.TestFindDuplicates) ... ok test_empty_input (skbio.util.tests.test_misc.TestFindDuplicates) ... ok test_many_duplicates (skbio.util.tests.test_misc.TestFindDuplicates) ... ok test_mixed_types (skbio.util.tests.test_misc.TestFindDuplicates) ... ok test_no_duplicates (skbio.util.tests.test_misc.TestFindDuplicates) ... ok test_one_duplicate (skbio.util.tests.test_misc.TestFindDuplicates) ... ok test_copy (skbio.util.tests.test_misc.TestMiniRegistry) ... ok test_decoration (skbio.util.tests.test_misc.TestMiniRegistry) ... ok test_everything (skbio.util.tests.test_misc.TestMiniRegistry) ... ok test_equal (skbio.util.tests.test_testing.TestAssertDataFrameAlmostEqual) ... ok test_not_equal (skbio.util.tests.test_testing.TestAssertDataFrameAlmostEqual) ... ok test_assert_ordination_results_equal (skbio.util.tests.test_testing.TestAssertOrdinationResultsEqual) ... ok test_equal (skbio.util.tests.test_testing.TestAssertSeriesAlmostEqual) ... ok test_not_equal (skbio.util.tests.test_testing.TestAssertSeriesAlmostEqual) ... ok test_get_data_path (skbio.util.tests.test_testing.TestGetDataPath) ... ok test_column_almost_zero (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok test_column_zeros (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok test_easy_already_equal (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok test_easy_different (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok test_hard (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok We don't want a value that might be negative due to ... ok test_shapes_and_nonarray_input (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok Taking abs value of everything would lead to false ... ok test_zeros (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok test_add_line (skbio.tests.test_base.TestElasticLines) ... ok test_add_lines (skbio.tests.test_base.TestElasticLines) ... ok test_add_separator (skbio.tests.test_base.TestElasticLines) ... ok test_empty (skbio.tests.test_base.TestElasticLines) ... ok test_no_instantiation (skbio.tests.test_base.TestSkbioObject) ... ok test_contains (skbio.tests.test_workflow.ExistsTests) ... ok test_call (skbio.tests.test_workflow.NotExecutedTests) ... ok test_contains (skbio.tests.test_workflow.NotNoneTests) ... ok test_dec (skbio.tests.test_workflow.PriorityTests) ... ok test_methodb1 (skbio.tests.test_workflow.RequiresTests) ... ok test_methodb2_accept (skbio.tests.test_workflow.RequiresTests) ... ok test_methodb2_ignore (skbio.tests.test_workflow.RequiresTests) ... ok test_not_none_avoid (skbio.tests.test_workflow.RequiresTests) ... ok test_not_none_execute (skbio.tests.test_workflow.RequiresTests) ... ok test_validdata (skbio.tests.test_workflow.RequiresTests) ... ok test_all_wf_methods (skbio.tests.test_workflow.WorkflowTests) ... ok test_call_AC_fail (skbio.tests.test_workflow.WorkflowTests) ... ok test_call_AC_fail_noshort (skbio.tests.test_workflow.WorkflowTests) ... ok test_call_AC_no_fail (skbio.tests.test_workflow.WorkflowTests) ... ok test_debug_trace (skbio.tests.test_workflow.WorkflowTests) ... ok test_init (skbio.tests.test_workflow.WorkflowTests) ... ok test_init_reserved_attributes (skbio.tests.test_workflow.WorkflowTests) ... ok ---------------------------------------------------------------------- Ran 2340 tests in 217.025s OK (SKIP=38) create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-skbio running install running build running build_py running build_ext running install_lib creating /<>/debian/python3-skbio creating /<>/debian/python3-skbio/usr creating /<>/debian/python3-skbio/usr/lib creating /<>/debian/python3-skbio/usr/lib/python3.8 creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/benchmarks copying /<>/.pybuild/cpython3_3.8_skbio/build/benchmarks/benchmarks.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/benchmarks copying /<>/.pybuild/cpython3_3.8_skbio/build/benchmarks/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/benchmarks creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/benchmarks/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/benchmarks/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/benchmarks/__pycache__ creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_nucleotide_mixin.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_rna.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_genetic_code.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_protein.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_dna.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_repr.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_dna.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/distance.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_genetic_code.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_rna.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_nucleotide_mixin.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_grammared_sequence.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_sequence.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_protein.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/__pycache__/_repr.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/distance.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_grammared_sequence.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_genetic_code.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_grammared_sequence.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_protein.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_distance.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_rna.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_protein.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_genetic_code.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_sequence.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_dna.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_distance.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_nucleotide_sequences.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_grammared_sequence.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/__pycache__/test_rna.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_dna.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_nucleotide_sequences.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/test.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/_majority_rule.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/_tree.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/_nj.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/__pycache__/_exception.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/__pycache__/_tree.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/__pycache__/_nj.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/__pycache__/_majority_rule.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/_exception.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_majority_rule.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_nj.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/__pycache__/test_nj.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/__pycache__/test_tree.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/__pycache__/test_majority_rule.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tree/tests/test_tree.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/_mixin.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/_repr.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/_intersection.cpython-38-aarch64-linux-gnu.so -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/__pycache__/_mixin.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/__pycache__/_testing.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/__pycache__/_interval.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/__pycache__/_repr.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/_testing.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/_interval.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_interval.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_intersection.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/test_mixin.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/__pycache__/test_interval.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/__pycache__/test_intersection.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/metadata/tests/__pycache__/test_mixin.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/__pycache__ creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_correspondence_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_ordination_results.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_canonical_correspondence_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_utils.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__pycache__/_redundancy_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__pycache__/_utils.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__pycache__/_ordination_results.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__pycache__/_principal_coordinate_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__pycache__/_correspondence_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/__pycache__/_canonical_correspondence_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__pycache__ creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_X -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/varespec.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_X -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_Y -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/varechem.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_skbio -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_Y -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/data/L&L_CA_data -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_util.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__pycache__/test_util.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__pycache__/test_redundancy_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__pycache__/test_canonical_correspondence_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__pycache__/test_correspondence_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__pycache__/test_ordination_results.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/__pycache__/test_principal_coordinate_analysis.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_correspondence_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_redundancy_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_ordination_results.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_redundancy_analysis.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/power.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/_subsample.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/_misc.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/_hommola.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/__pycache__/_hommola.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/__pycache__ creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests/__pycache__/test_hommola.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/evolve/tests/test_hommola.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/_bioenv.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/_permanova.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/_permdisp.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/_anosim.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__pycache__/_mantel.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__pycache__/_permanova.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__pycache__/_bioenv.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__pycache__/_permdisp.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__pycache__/_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/__pycache__/_anosim.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/_mantel.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_permdisp.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_permanova.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/exp_results_single_column.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/df.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/dm_reordered.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/exp_results.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/dm4.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/dm3.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/dm.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/dm2.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/df_extra_column.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_bioenv.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_mantel.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__pycache__/test_permanova.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__pycache__/test_permdisp.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__pycache__/test_anosim.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__pycache__/test_bioenv.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__pycache__/test_mantel.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/__pycache__/test_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_anosim.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/composition.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__pycache__/power.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__pycache__/_misc.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__pycache__/gradient.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__pycache__/composition.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__pycache__/_subsample.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/__subsample.cpython-38-aarch64-linux-gnu.so -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_subsample.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_power.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/vr_real_out -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/gr_w_msg_out -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/cr_data_raw -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/cr_no_data_raw -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/vr_out -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/gr_wo_msg_out -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/gr_wo_msg_raw -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/vr_real_raw -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/vr_raw -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/cr_no_data_out -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/cr_data_out -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/data/gr_w_msg_raw -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_composition.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/__pycache__/test_composition.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/__pycache__/test_gradient.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/__pycache__/test_subsample.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/__pycache__/test_power.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/__pycache__/test_misc.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_misc.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_gradient.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/gradient.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_decorator.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_misc.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/__pycache__/_misc.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/__pycache__/_exception.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/__pycache__/_testing.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/__pycache__/_decorator.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/__pycache__/_warning.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_exception.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_testing.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_decorator.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/__pycache__/test_testing.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/__pycache__/test_decorator.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/__pycache__/test_misc.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_misc.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/tests/test_testing.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_warning.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/__pycache__/workflow.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/__pycache__/test.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/__pycache__/_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/workflow.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/_fileobject.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/registry.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__pycache__/registry.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__pycache__/_iosources.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__pycache__/util.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__pycache__/_fileobject.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__pycache__/_exception.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/__pycache__/_warning.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/_exception.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/_iosources.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/blast7.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/fastq.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/clustal.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/gff3.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/ordination.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/genbank.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/stockholm.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/qseq.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/_blast.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/lsmat.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/embl.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/lsmat.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/blast7.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/emptyfile.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/phylip.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/gff3.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/stockholm.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/fasta.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/_sequence_feature_vocabulary.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/clustal.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/embl.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/ordination.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/blast6.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/qseq.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/fastq.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/genbank.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/_blast.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/__pycache__/newick.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/_sequence_feature_vocabulary.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/emptyfile.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/blast6.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/fasta.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/newick.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_phylip.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_embl.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_lsmat.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_multiple_msa -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/gff3_dna -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/legacy9_and_blast7_default -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_trunc_in_seq.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_blanks_end_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_invalid_x -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_invalid_too_many_columns -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_default_multi_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error22 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_10_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_3_seqs_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_single_seq_sanger -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_missing_rn_tag -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_missing_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gc_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_mixed_qual_scores -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_invalid_for_sniffer -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/gff3_single_record -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_multi_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/wrapping_original_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_max_width_5 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_invalid_number_of_columns -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_trunc_in_qual.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/empty -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_trunc_at_qual.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_blanks_end_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_description_newline_replacement_none -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_single_record_lower -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error17 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_custom_multi_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_custom_multi_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/gff3_multi_record -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/tsv_8_fields -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gf_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_trunc_in_title.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_6_blanks_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_short_qual.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_tabular_msa_different_type -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_qual_escape.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_blank_lines -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_single_record_upper -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_blank_sequence -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_invalid_no_data -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_invalid_type_in_column -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_description_newline_replacement_none -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_double_seq.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_ws_lines_end_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_missing_locus_name -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error24 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_metadata_only -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_seq_too_short -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_multiple_references -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_zero_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_extensive_mixed -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_legacy_format -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/legacy9_mixed_nans -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_single_reference -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_5_blanks_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/longreads_original_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/whitespace_only -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_blank_lines_between_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_invalid_data_type -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_multi_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error5 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/longreads_as_illumina.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_trunc_at_plus.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_custom_minimal -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_default_single_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_whitespace_only_lines -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_tabs.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_float -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_w_beginning_whitespace -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_runon_references -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_blank_lines_between_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error23 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error6 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_dna_3_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_feature_level_record -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_spaces.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_runon_references_mixed -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_diff_ids.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_single_record_simple -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_single_record -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error16 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_w_beginning_whitespace -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_example2_scores -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_missing_reference_items -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_no_data -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_3_seqs_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_invalid_filter -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_single_seq_long -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_missing_footer -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_missing_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_blank_between_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error13 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_single_seq_short -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_header_too_long -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/wrapping_as_illumina.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_invalid_tile -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_qual_null.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_writer_sanger_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_seq_too_long -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error21 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_custom_minimal -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_whitespace_only_lines -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error18 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_single_record_upper -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_single_record -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_blank_lines -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_no_qual.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error14 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_qual_unit_sep.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_header_too_short -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error3 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_custom_mixed_nans -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_invalid_read -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_uniprot_record -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/legacy9_single_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error11 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error15 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_all_data_types -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error20 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_2_seqs_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_qual_space.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_single_tree_without_id -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error12 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_legacy_format -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/gff3_bad_missing_directive -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_trunc_at_seq.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gs_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/longreads_as_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error9 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error4 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_constructed -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_single_record_lower -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_tabular_msa_different_type -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_gr -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/tsv_10_fields -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_invalid_y -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_single_tree_with_id -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_malformed_data_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_differing_gc_data_length -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_differing_seq_lengths -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_multi_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_max_width_5 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_variable_length_ids -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_custom_mixed_nans -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/legacy9_multi_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/gff3_bad_wrong_columns -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_string -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gr_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error19 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_max_width_1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qseq_invalid_lane -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_data_only -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_qual_vtab.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_gc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_no_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_invalid_column_types -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_nonstring_labels -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_invalid_differing_fields -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_single_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_default_multi_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_qual_tab.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_custom_single_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error10 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_ws_lines_between_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_trunc_in_plus.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/wrapping_as_sanger.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_long_qual.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_rna -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_max_width_1 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/genbank_multi_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_multiple_trees -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_custom_single_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_ws_lines_between_records -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error8 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_example3_scores -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/embl_feature_level_record_no_FT -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast6_default_single_line -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_different_padding -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_qual_del.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_differing_gr_data_length -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/legacy9_invalid_differing_fields -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_two_of_each_metadata -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_seq_sanger -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_invalid_blank_sequence -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_minimal -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_extensive -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/blast7_invalid_gibberish -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_multi_seq_roundtrip -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/ordination_error7 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/phylip_two_chunks -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/error_double_qual.fastq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fasta_single_seq -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_after_header -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_stockholm.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_emptyfile.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_sequence_feature_vocabulary.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_fasta.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_gff3.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_qseq.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_blast7.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_genbank.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_stockholm.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_sequence_feature_vocabulary.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_embl.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_blast6.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_ordination.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_qseq.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_blast7.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_emptyfile.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_clustal.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_fasta.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_gff3.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_lsmat.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_fastq.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_newick.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/__pycache__/test_phylip.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_genbank.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_clustal.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_fastq.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_ordination.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_newick.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_blast6.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/tests/test_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/format/phylip.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/real_file_2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/big5_file.bz2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/example_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/real_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/example_file.bz2 -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/example_file.gz -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/big5_file -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/data/big5_file.gz -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/data copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_iosources.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_util.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/__pycache__/test_util.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/__pycache__/test_registry.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/__pycache__/test_iosources.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/tests/test_registry.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/_warning.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/io/util.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/test_workflow.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/__pycache__/test_workflow.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/__pycache__/test_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/tests/test_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/_lib copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_lib/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/_lib copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_indexing.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_tabular_msa.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_pairwise.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_repr.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/_ssw_wrapper.cpython-38-aarch64-linux-gnu.so -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/__pycache__/_pairwise.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/__pycache__/_tabular_msa.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/__pycache__/_indexing.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/__pycache__/_repr.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/__pycache__ creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_pairwise.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_tabular_msa.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/__pycache__/test_tabular_msa.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/__pycache__/test_pairwise.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/__pycache__/test_ssw.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/alignment/tests/test_ssw.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/_block.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_lladser.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_ace.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_gini.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__pycache__/_ace.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__pycache__/_lladser.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__pycache__/_gini.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__pycache__/_faith_pd.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__pycache__/_chao1.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/__pycache__/_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_chao1.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_lladser.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_ace.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/data creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_faith_pd.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_gini.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_lladser.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_chao1.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_gini.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_ace.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_faith_pd.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_base.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_chao1.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/tests/test_base.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/alpha/_faith_pd.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/_driver.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/_util.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/__pycache__/_util.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/__pycache__/_block.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/__pycache__/_driver.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/_phylogenetic.cpython-38-aarch64-linux-gnu.so -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/__pycache__/_unifrac.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/_unifrac.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/test_unifrac.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/beta/tests/__pycache__/test_unifrac.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/__pycache__ creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_block.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/__init__.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_util.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests creating /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/__pycache__/test_util.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/__pycache__/test_driver.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/__pycache__/test_block.cpython-38.pyc -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/__pycache__ copying /<>/.pybuild/cpython3_3.8_skbio/build/skbio/diversity/tests/test_driver.py -> /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/benchmarks/benchmarks.py to benchmarks.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/benchmarks/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_nucleotide_mixin.py to _nucleotide_mixin.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_rna.py to _rna.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_genetic_code.py to _genetic_code.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_protein.py to _protein.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_dna.py to _dna.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_repr.py to _repr.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/distance.py to distance.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_sequence.py to _sequence.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/_grammared_sequence.py to _grammared_sequence.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_genetic_code.py to test_genetic_code.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_grammared_sequence.py to test_grammared_sequence.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_protein.py to test_protein.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_distance.py to test_distance.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_rna.py to test_rna.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_dna.py to test_dna.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_nucleotide_sequences.py to test_nucleotide_sequences.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/sequence/tests/test_sequence.py to test_sequence.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/test.py to test.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/_majority_rule.py to _majority_rule.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/_tree.py to _tree.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/_nj.py to _nj.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/_exception.py to _exception.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/test_majority_rule.py to test_majority_rule.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/test_nj.py to test_nj.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tree/tests/test_tree.py to test_tree.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/_mixin.py to _mixin.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/_repr.py to _repr.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/_testing.py to _testing.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/_interval.py to _interval.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/test_interval.py to test_interval.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/test_intersection.py to test_intersection.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/test_mixin.py to test_mixin.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/metadata/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/_correspondence_analysis.py to _correspondence_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/_ordination_results.py to _ordination_results.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py to _principal_coordinate_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/_canonical_correspondence_analysis.py to _canonical_correspondence_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/_utils.py to _utils.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py to test_canonical_correspondence_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/test_util.py to test_util.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/test_correspondence_analysis.py to test_correspondence_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/test_redundancy_analysis.py to test_redundancy_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/test_ordination_results.py to test_ordination_results.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py to test_principal_coordinate_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/ordination/_redundancy_analysis.py to _redundancy_analysis.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/power.py to power.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/_subsample.py to _subsample.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/_misc.py to _misc.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/_hommola.py to _hommola.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/evolve/tests/test_hommola.py to test_hommola.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/_bioenv.py to _bioenv.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/_permanova.py to _permanova.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/_permdisp.py to _permdisp.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/_anosim.py to _anosim.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/_base.py to _base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/_mantel.py to _mantel.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/test_permdisp.py to test_permdisp.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/test_permanova.py to test_permanova.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/test_bioenv.py to test_bioenv.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/test_mantel.py to test_mantel.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/test_base.py to test_base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/distance/tests/test_anosim.py to test_anosim.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/composition.py to composition.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/test_subsample.py to test_subsample.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/test_power.py to test_power.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/test_composition.py to test_composition.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/test_misc.py to test_misc.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/tests/test_gradient.py to test_gradient.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/stats/gradient.py to gradient.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/_decorator.py to _decorator.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/_misc.py to _misc.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/_exception.py to _exception.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/_testing.py to _testing.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/test_decorator.py to test_decorator.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/test_misc.py to test_misc.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/tests/test_testing.py to test_testing.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/util/_warning.py to _warning.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/_base.py to _base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/workflow.py to workflow.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/_fileobject.py to _fileobject.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/registry.py to registry.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/_exception.py to _exception.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/_iosources.py to _iosources.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/blast7.py to blast7.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/fastq.py to fastq.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/clustal.py to clustal.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/gff3.py to gff3.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/ordination.py to ordination.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/genbank.py to genbank.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/stockholm.py to stockholm.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/qseq.py to qseq.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/_blast.py to _blast.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/lsmat.py to lsmat.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/_base.py to _base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/embl.py to embl.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/_sequence_feature_vocabulary.py to _sequence_feature_vocabulary.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/emptyfile.py to emptyfile.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/blast6.py to blast6.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/fasta.py to fasta.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/newick.py to newick.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_phylip.py to test_phylip.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_embl.py to test_embl.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_lsmat.py to test_lsmat.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_stockholm.py to test_stockholm.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_emptyfile.py to test_emptyfile.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_sequence_feature_vocabulary.py to test_sequence_feature_vocabulary.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_fasta.py to test_fasta.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_gff3.py to test_gff3.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_qseq.py to test_qseq.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_blast7.py to test_blast7.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_genbank.py to test_genbank.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_clustal.py to test_clustal.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_fastq.py to test_fastq.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_ordination.py to test_ordination.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_newick.py to test_newick.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_blast6.py to test_blast6.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/tests/test_base.py to test_base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/format/phylip.py to phylip.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/test_iosources.py to test_iosources.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/test_util.py to test_util.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/tests/test_registry.py to test_registry.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/_warning.py to _warning.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/io/util.py to util.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests/test_workflow.py to test_workflow.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/tests/test_base.py to test_base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/_lib/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/_indexing.py to _indexing.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/_tabular_msa.py to _tabular_msa.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/_pairwise.py to _pairwise.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/_repr.py to _repr.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/test_pairwise.py to test_pairwise.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/test_tabular_msa.py to test_tabular_msa.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/alignment/tests/test_ssw.py to test_ssw.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/_block.py to _block.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/_lladser.py to _lladser.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/_ace.py to _ace.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/_gini.py to _gini.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/_base.py to _base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/_chao1.py to _chao1.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/test_lladser.py to test_lladser.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/test_ace.py to test_ace.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/test_faith_pd.py to test_faith_pd.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/test_gini.py to test_gini.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/test_chao1.py to test_chao1.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/tests/test_base.py to test_base.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/alpha/_faith_pd.py to _faith_pd.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/_driver.py to _driver.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/_util.py to _util.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/_unifrac.py to _unifrac.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/beta/tests/test_unifrac.py to test_unifrac.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/test_block.py to test_block.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/test_util.py to test_util.cpython-38.pyc byte-compiling /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/skbio/diversity/tests/test_driver.py to test_driver.cpython-38.pyc running install_egg_info running egg_info creating scikit_bio.egg-info writing scikit_bio.egg-info/PKG-INFO writing dependency_links to scikit_bio.egg-info/dependency_links.txt writing requirements to scikit_bio.egg-info/requires.txt writing top-level names to scikit_bio.egg-info/top_level.txt writing manifest file 'scikit_bio.egg-info/SOURCES.txt' reading manifest file 'scikit_bio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution warning: no previously-included files matching '.coverage' found anywhere in distribution writing manifest file 'scikit_bio.egg-info/SOURCES.txt' Copying scikit_bio.egg-info to /<>/debian/python3-skbio/usr/lib/python3.8/dist-packages/scikit_bio-0.5.5.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild debian/rules override_dh_sphinxdoc make[1]: Entering directory '/<>' dh_link --package=python-skbio-doc \ /usr/share/javascript/mathjax/MathJax.js \ /usr/share/doc/python-skbio-doc/html/_static/MathJax.js dh_link: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_sphinxdoc --package=python-skbio-doc dh_sphinxdoc: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). make[1]: Leaving directory '/<>' dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-skbio: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-skbio: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-skbio: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-skbio: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-skbio (in debian/python3-skbio); do_strip: , oemstrip: pkgstriptranslations: processing python3-skbio-dbgsym (in debian/.debhelper/python3-skbio/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-skbio/dbgsym-root/DEBIAN/control, package python3-skbio-dbgsym, directory debian/.debhelper/python3-skbio/dbgsym-root pkgstripfiles: processing control file: debian/python3-skbio/DEBIAN/control, package python3-skbio, directory debian/python3-skbio dpkg-deb: building package 'python3-skbio-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-skbio/python3-skbio-dbgsym_0.5.5-4_arm64.deb'. pkgstripfiles: Truncating usr/share/doc/python3-skbio/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-skbio ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-skbio' in '../python3-skbio_0.5.5-4_arm64.deb'. Renaming python3-skbio-dbgsym_0.5.5-4_arm64.deb to python3-skbio-dbgsym_0.5.5-4_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../python-skbio_0.5.5-4_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200221-2326 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-skbio_0.5.5-4_arm64.changes: ----------------------------------- Format: 1.8 Date: Fri, 21 Feb 2020 14:08:14 +0100 Source: python-skbio Binary: python3-skbio Architecture: arm64 Version: 0.5.5-4 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: python3-skbio - Python3 data structures, algorithms, educational resources for bi Closes: 950930 Changes: python-skbio (0.5.5-4) unstable; urgency=medium . * Team upload. * Build on any architecture * Add compatability for pandas >= 1.0 (Closes: #950930) * -doc: add ${sphinxdoc:Built-Using} and mark as Multi-Arch: foreign * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Submit. Checksums-Sha1: 7f010e240f8b9e1ab756686fdead2ee884dc6bf5 8923 python-skbio_0.5.5-4_arm64.buildinfo 76004fcf556559ca2fc3f9e3389b919ce26c29ac 531936 python3-skbio-dbgsym_0.5.5-4_arm64.ddeb aa39f47bc18ee039fc520a5bf1d9edbcc50a4cd2 589376 python3-skbio_0.5.5-4_arm64.deb Checksums-Sha256: 1de48b8f2ef21d05fde6ce86ee61e71f34f3639a8a91d818360fe6a38b4fca56 8923 python-skbio_0.5.5-4_arm64.buildinfo 70a3c381b01d631db4c42a03d06d4ee11b21049a2a385840da3f0aa797e39900 531936 python3-skbio-dbgsym_0.5.5-4_arm64.ddeb cb594cecc189d436a57875967cc34d2e5a961b7ffff8b7bccebca99d18a726a0 589376 python3-skbio_0.5.5-4_arm64.deb Files: 0c2d156a6a1a0531fc70e614922a0528 8923 python optional python-skbio_0.5.5-4_arm64.buildinfo 64ee785f9d907d78dce4652b7b6008a5 531936 debug optional python3-skbio-dbgsym_0.5.5-4_arm64.ddeb b3bac5a8acf72a2e5c42cf2950c61845 589376 python optional python3-skbio_0.5.5-4_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-skbio_0.5.5-4_arm64.deb ------------------------------- new debian package, version 2.0. size 589376 bytes: control archive=16292 bytes. 956 bytes, 17 lines control 69795 bytes, 622 lines md5sums 252 bytes, 12 lines * postinst #!/bin/sh 401 bytes, 12 lines * prerm #!/bin/sh Package: python3-skbio Source: python-skbio Version: 0.5.5-4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3885 Depends: libc6 (>= 2.17), libssw0 (>= 1.1), python3 (<< 3.9), python3 (>= 3.8~), python3-cachecontrol, python3-decorator, python3-hdmedians, python3-ipython, python3-lockfile, python3-matplotlib, python3-natsort, python3-numpy (>= 1:1.9.2), python3-pandas (>= 0.19.2), python3-scipy (>= 1.3.3), python3-sklearn, python3:any Suggests: python-skbio-doc (= 0.5.5-4) Section: python Priority: optional Homepage: https://github.com/biocore/scikit-bio Description: Python3 data structures, algorithms, educational resources for bioinformatic Scikit-bio is a Python package providing data structures, algorithms, and educational resources for bioinformatics. . This is the package for Python3 drwxr-xr-x root/root 0 2020-02-21 13:08 ./ drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/ drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/python3/dist-packages/benchmarks/ -rw-r--r-- root/root 0 2018-12-13 20:13 ./usr/lib/python3/dist-packages/benchmarks/__init__.py -rw-r--r-- root/root 1699 2018-12-13 20:13 ./usr/lib/python3/dist-packages/benchmarks/benchmarks.py drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/python3/dist-packages/scikit_bio-0.5.5.egg-info/ -rw-r--r-- root/root 8890 2020-02-21 13:08 ./usr/lib/python3/dist-packages/scikit_bio-0.5.5.egg-info/PKG-INFO -rw-r--r-- root/root 1 2020-02-21 13:08 ./usr/lib/python3/dist-packages/scikit_bio-0.5.5.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2020-02-21 13:08 ./usr/lib/python3/dist-packages/scikit_bio-0.5.5.egg-info/requires.txt -rw-r--r-- root/root 17 2020-02-21 13:08 ./usr/lib/python3/dist-packages/scikit_bio-0.5.5.egg-info/top_level.txt drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/python3/dist-packages/skbio/ -rw-r--r-- root/root 2328 2018-12-13 20:13 ./usr/lib/python3/dist-packages/skbio/__init__.py -rw-r--r-- root/root 1687 2018-12-13 20:13 ./usr/lib/python3/dist-packages/skbio/_base.py drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/python3/dist-packages/skbio/alignment/ -rw-r--r-- root/root 6612 2018-12-13 20:13 ./usr/lib/python3/dist-packages/skbio/alignment/__init__.py -rw-r--r-- root/root 8571 2018-12-13 20:13 ./usr/lib/python3/dist-packages/skbio/alignment/_indexing.py drwxr-xr-x root/root 0 2020-02-21 13:08 ./usr/lib/python3/dist-packages/skbio/alignment/_lib/ -rw-r--r-- root/root 353 2018-12-13 20:13 ./usr/lib/python3/dist-packages/skbio/alignment/_lib/__init__.py -rw-r--r-- root/root 44605 2018-12-13 20:13 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2020-02-21 11:34 ./usr/share/lintian/overrides/python3-skbio +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 73564 Build-Time: 596 Distribution: focal-proposed Host Architecture: arm64 Install-Time: 96 Job: python-skbio_0.5.5-4.dsc Machine Architecture: arm64 Package: python-skbio Package-Time: 694 Source-Version: 0.5.5-4 Space: 73564 Status: successful Version: 0.5.5-4 -------------------------------------------------------------------------------- Finished at 20200221-2326 Build needed 00:11:34, 73564k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18744266 Scanning for processes to kill in build PACKAGEBUILD-18744266