RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux sulfur 3.2.0-55-powerpc64-smp #85-Ubuntu SMP Wed Oct 2 15:28:59 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 25 Nov 10:48:49 ntpdate[16282]: adjust time server 10.211.37.1 offset -0.000167 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-566019', '/home/buildd/filecache-default/2e51663198a5097212156d48682d677b022256d2'] Unpacking chroot for build PACKAGEBUILD-566019 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-566019'] Mounting chroot for build PACKAGEBUILD-566019 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-566019', 'deb http://ftpmaster.internal/ubuntu hardy main universe'] Overriding sources.list in build-PACKAGEBUILD-566019 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-566019', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-566019 Get:1 http://ftpmaster.internal hardy Release.gpg [189B] Get:2 http://ftpmaster.internal hardy Release [65.9kB] Ign http://ftpmaster.internal hardy Release Get:3 http://ftpmaster.internal hardy/main Packages [1165kB] Get:4 http://ftpmaster.internal hardy/universe Packages [4221kB] Fetched 5453kB in 2s (2451kB/s) Reading package lists... W: GPG error: http://ftpmaster.internal hardy Release: Could not execute '/usr/bin/gpgv' to verify signature (is gnupg installed?) W: You may want to run apt-get update to correct these problems Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-566019', 'powerpc', 'hardy', '--nolog', '--batch', '--archive=ubuntu', '--dist=hardy', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'qtl_1.07-12-1build1.dsc'] Initiating build PACKAGEBUILD-566019 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 2.6.42-55-powerpc64-smp #85-Ubuntu SMP Wed Oct 2 15:28:59 UTC 2013 ppc Automatic build of qtl_1.07-12-1build1 on sulfur by sbuild/powerpc 1.170.5 Build started at 20131125-1049 ****************************************************************************** qtl_1.07-12-1build1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>> 4.1.0), cdbs, r-base-dev (>= 2.5.1) Checking for already installed source dependencies... debhelper: missing cdbs: missing r-base-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs r-base-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake1.7 autotools-dev dpatch fdupes file gettext gettext-base gfortran gfortran-4.2 html2text ifupdown intltool intltool-debian libblas-dev libblas3gf libbz2-dev libexpat1 libgfortran2 libgmp3c2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libjpeg62 libjpeg62-dev libmagic1 libmpfr1ldbl libncurses5-dev libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpng12-0 libpng12-dev libreadline5 libreadline5-dev libsm6 liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxcb-xlib0 libxcb1 libxdmcp6 libxml-parser-perl libxt6 m4 net-tools netbase po-debconf r-base-core readline-common tcl8.4 tk8.4 ucf unzip update-inetd x11-common zip zlib1g-dev Suggested packages: autoconf2.13 autobook autoconf-archive gnu-standards autoconf-doc devscripts doc-base dh-make curl cvs gettext-doc gfortran-doc gfortran-multilib gfortran-4.2-doc gfortran-4.2-multilib libgfortran2-dbg iproute dhcp3-client dhcp-client ppp libio-socket-ssl-perl ess r-base-html r-base-latex r-doc-info r-doc-pdf r-doc-html r-mathlib tclreadline Recommended packages: automaken patchutils libcompress-zlib-perl libhtml-format-perl libmailtools-perl libmail-sendmail-perl libmail-box-perl r-recommended xterm x-terminal-emulator The following NEW packages will be installed: autoconf automake1.7 autotools-dev cdbs debhelper dpatch fdupes file gettext gettext-base gfortran gfortran-4.2 html2text ifupdown intltool intltool-debian libblas-dev libblas3gf libbz2-dev libexpat1 libgfortran2 libgmp3c2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libjpeg62 libjpeg62-dev libmagic1 libmpfr1ldbl libncurses5-dev libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpng12-0 libpng12-dev libreadline5 libreadline5-dev libsm6 liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxcb-xlib0 libxcb1 libxdmcp6 libxml-parser-perl libxt6 m4 net-tools netbase po-debconf r-base-core r-base-dev readline-common tcl8.4 tk8.4 ucf unzip update-inetd x11-common zip zlib1g-dev 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 29.8MB of archives. After this operation, 92.7MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libx11-data libxau6 libxdmcp6 libxcb1 libxcb-xlib0 libx11-6 libice6 libsm6 libxt6 gettext-base net-tools ifupdown readline-common libreadline5 update-inetd netbase libmagic1 file libexpat1 libhtml-tagset-perl liburi-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl ucf m4 autoconf autotools-dev automake1.7 html2text gettext intltool-debian po-debconf debhelper fdupes intltool cdbs dpatch libgfortran2 libgmp3c2 libmpfr1ldbl gfortran-4.2 gfortran libblas3gf libblas-dev libbz2-dev libjpeg62 libjpeg62-dev libncurses5-dev libpaper1 libpaper-utils libpcre3 libpcrecpp0 libpcre3-dev libpng12-0 zlib1g-dev libpng12-dev libreadline5-dev tcl8.4 tk8.4 unzip zip r-base-core r-base-dev Authentication warning overridden. Get:1 http://ftpmaster.internal hardy/main x11-common 1:7.3+10ubuntu10 [365kB] Get:2 http://ftpmaster.internal hardy/main libx11-data 2:1.1.3-1ubuntu2 [162kB] Get:3 http://ftpmaster.internal hardy/main libxau6 1:1.0.3-2 [14.4kB] Get:4 http://ftpmaster.internal hardy/main libxdmcp6 1:1.0.2-2 [19.7kB] Get:5 http://ftpmaster.internal hardy/main libxcb1 1.1-1ubuntu1 [46.1kB] Get:6 http://ftpmaster.internal hardy/main libxcb-xlib0 1.1-1ubuntu1 [7076B] Get:7 http://ftpmaster.internal hardy/main libx11-6 2:1.1.3-1ubuntu2 [632kB] Get:8 http://ftpmaster.internal hardy/main libice6 2:1.0.4-1 [51.6kB] Get:9 http://ftpmaster.internal hardy/main libsm6 2:1.0.3-1 [24.3kB] Get:10 http://ftpmaster.internal hardy/main libxt6 1:1.0.5-3 [183kB] Get:11 http://ftpmaster.internal hardy/main gettext-base 0.17-2ubuntu1 [76.4kB] Get:12 http://ftpmaster.internal hardy/main net-tools 1.60-19ubuntu1 [208kB] Get:13 http://ftpmaster.internal hardy/main ifupdown 0.6.8ubuntu8 [54.5kB] Get:14 http://ftpmaster.internal hardy/main readline-common 5.2-3build1 [50.9kB] Get:15 http://ftpmaster.internal hardy/main libreadline5 5.2-3build1 [144kB] Get:16 http://ftpmaster.internal hardy/main update-inetd 4.27-0.6 [11.0kB] Get:17 http://ftpmaster.internal hardy/main netbase 4.30ubuntu1 [20.3kB] Get:18 http://ftpmaster.internal hardy/main libmagic1 4.21-3 [341kB] Get:19 http://ftpmaster.internal hardy/main file 4.21-3 [42.8kB] Get:20 http://ftpmaster.internal hardy/main libexpat1 2.0.1-0ubuntu1 [70.4kB] Get:21 http://ftpmaster.internal hardy/main libhtml-tagset-perl 3.10-2 [13.7kB] Get:22 http://ftpmaster.internal hardy/main liburi-perl 1.35.dfsg.1-1 [88.0kB] Get:23 http://ftpmaster.internal hardy/main libhtml-parser-perl 3.56-1 [108kB] Get:24 http://ftpmaster.internal hardy/main libhtml-tree-perl 3.23-1 [209kB] Get:25 http://ftpmaster.internal hardy/main libwww-perl 5.808-1 [366kB] Get:26 http://ftpmaster.internal hardy/main libxml-parser-perl 2.34-4.3 [325kB] Get:27 http://ftpmaster.internal hardy/main ucf 3.005 [61.6kB] Get:28 http://ftpmaster.internal hardy/main m4 1.4.10-1 [209kB] Get:29 http://ftpmaster.internal hardy/main autoconf 2.61-4 [448kB] Get:30 http://ftpmaster.internal hardy/main autotools-dev 20070725.1 [61.9kB] Get:31 http://ftpmaster.internal hardy/main automake1.7 1.7.9-9 [391kB] Get:32 http://ftpmaster.internal hardy/main html2text 1.3.2a-3build2 [92.5kB] Get:33 http://ftpmaster.internal hardy/main gettext 0.17-2ubuntu1 [2103kB] Get:34 http://ftpmaster.internal hardy/main intltool-debian 0.35.0+20060710.1 [31.6kB] Get:35 http://ftpmaster.internal hardy/main po-debconf 1.0.10 [232kB] Get:36 http://ftpmaster.internal hardy/main debhelper 6.0.4ubuntu1 [516kB] Get:37 http://ftpmaster.internal hardy/main fdupes 1.40-4build1 [15.7kB] Get:38 http://ftpmaster.internal hardy/main intltool 0.37.1-1ubuntu1 [85.8kB] Get:39 http://ftpmaster.internal hardy/main cdbs 0.4.51ubuntu1 [964kB] Get:40 http://ftpmaster.internal hardy/main dpatch 2.0.28 [87.1kB] Get:41 http://ftpmaster.internal hardy/main libgfortran2 4.2.3-2ubuntu7 [199kB] Get:42 http://ftpmaster.internal hardy/main libgmp3c2 2:4.2.2+dfsg-1ubuntu2 [406kB] Get:43 http://ftpmaster.internal hardy/main libmpfr1ldbl 2.3.1.dfsg.1-2ubuntu1 [355kB] Get:44 http://ftpmaster.internal hardy/main gfortran-4.2 4.2.3-2ubuntu7 [3162kB] Get:45 http://ftpmaster.internal hardy/main gfortran 4:4.2.3-1ubuntu3 [1216B] Get:46 http://ftpmaster.internal hardy/main libblas3gf 1.2-1.3ubuntu3 [195kB] Get:47 http://ftpmaster.internal hardy/main libblas-dev 1.2-1.3ubuntu3 [210kB] Get:48 http://ftpmaster.internal hardy/main libbz2-dev 1.0.4-2ubuntu4 [34.3kB] Get:49 http://ftpmaster.internal hardy/main libjpeg62 6b-14 [93.8kB] Get:50 http://ftpmaster.internal hardy/main libjpeg62-dev 6b-14 [196kB] Get:51 http://ftpmaster.internal hardy/main libncurses5-dev 5.6+20071124-1ubuntu2 [1510kB] Get:52 http://ftpmaster.internal hardy/main libpaper1 1.1.23 [23.4kB] Get:53 http://ftpmaster.internal hardy/main libpaper-utils 1.1.23 [20.7kB] Get:54 http://ftpmaster.internal hardy/main libpcre3 7.4-1ubuntu2 [211kB] Get:55 http://ftpmaster.internal hardy/main libpcrecpp0 7.4-1ubuntu2 [94.3kB] Get:56 http://ftpmaster.internal hardy/main libpcre3-dev 7.4-1ubuntu2 [260kB] Get:57 http://ftpmaster.internal hardy/main libpng12-0 1.2.15~beta5-3 [190kB] Get:58 http://ftpmaster.internal hardy/main zlib1g-dev 1:1.2.3.3.dfsg-7ubuntu1 [162kB] Get:59 http://ftpmaster.internal hardy/main libpng12-dev 1.2.15~beta5-3 [179kB] Get:60 http://ftpmaster.internal hardy/main libreadline5-dev 5.2-3build1 [252kB] Get:61 http://ftpmaster.internal hardy/main tcl8.4 8.4.16-4ubuntu1 [1197kB] Get:62 http://ftpmaster.internal hardy/main tk8.4 8.4.16-2ubuntu1 [1043kB] Get:63 http://ftpmaster.internal hardy/main unzip 5.52-10ubuntu2 [167kB] Get:64 http://ftpmaster.internal hardy/main zip 2.32-1 [113kB] Get:65 http://ftpmaster.internal hardy/universe r-base-core 2.6.2-2 [10.6MB] Get:66 http://ftpmaster.internal hardy/universe r-base-dev 2.6.2-2 [2930B] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.8MB in 3s (8668kB/s) Selecting previously deselected package x11-common. (Reading database ... 9473 files and directories currently installed.) Unpacking x11-common (from .../x11-common_1%3a7.3+10ubuntu10_powerpc.deb) ... Setting up x11-common (1:7.3+10ubuntu10) ... Selecting previously deselected package libx11-data. (Reading database ... 9513 files and directories currently installed.) Unpacking libx11-data (from .../libx11-data_2%3a1.1.3-1ubuntu2_all.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.3-2_powerpc.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.2-2_powerpc.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.1-1ubuntu1_powerpc.deb) ... Selecting previously deselected package libxcb-xlib0. Unpacking libxcb-xlib0 (from .../libxcb-xlib0_1.1-1ubuntu1_powerpc.deb) ... Selecting previously deselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.1.3-1ubuntu2_powerpc.deb) ... 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Unpacking dpatch (from .../archives/dpatch_2.0.28_all.deb) ... Selecting previously deselected package libgfortran2. Unpacking libgfortran2 (from .../libgfortran2_4.2.3-2ubuntu7_powerpc.deb) ... Selecting previously deselected package libgmp3c2. Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.2.2+dfsg-1ubuntu2_powerpc.deb) ... Selecting previously deselected package libmpfr1ldbl. Unpacking libmpfr1ldbl (from .../libmpfr1ldbl_2.3.1.dfsg.1-2ubuntu1_powerpc.deb) ... Selecting previously deselected package gfortran-4.2. Unpacking gfortran-4.2 (from .../gfortran-4.2_4.2.3-2ubuntu7_powerpc.deb) ... Selecting previously deselected package gfortran. Unpacking gfortran (from .../gfortran_4%3a4.2.3-1ubuntu3_powerpc.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-1.3ubuntu3_powerpc.deb) ... Selecting previously deselected package libblas-dev. Unpacking libblas-dev (from .../libblas-dev_1.2-1.3ubuntu3_powerpc.deb) ... Selecting previously deselected package libbz2-dev. Unpacking libbz2-dev (from .../libbz2-dev_1.0.4-2ubuntu4_powerpc.deb) ... Selecting previously deselected package libjpeg62. Unpacking libjpeg62 (from .../libjpeg62_6b-14_powerpc.deb) ... Selecting previously deselected package libjpeg62-dev. Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b-14_powerpc.deb) ... Selecting previously deselected package libncurses5-dev. Unpacking libncurses5-dev (from .../libncurses5-dev_5.6+20071124-1ubuntu2_powerpc.deb) ... Selecting previously deselected package libpaper1. Unpacking libpaper1 (from .../libpaper1_1.1.23_powerpc.deb) ... Selecting previously deselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.23_powerpc.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_7.4-1ubuntu2_powerpc.deb) ... Selecting previously deselected package libpcrecpp0. Unpacking libpcrecpp0 (from .../libpcrecpp0_7.4-1ubuntu2_powerpc.deb) ... Selecting previously deselected package libpcre3-dev. Unpacking libpcre3-dev (from .../libpcre3-dev_7.4-1ubuntu2_powerpc.deb) ... Selecting previously deselected package libpng12-0. Unpacking libpng12-0 (from .../libpng12-0_1.2.15~beta5-3_powerpc.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.3.dfsg-7ubuntu1_powerpc.deb) ... Selecting previously deselected package libpng12-dev. Unpacking libpng12-dev (from .../libpng12-dev_1.2.15~beta5-3_powerpc.deb) ... Selecting previously deselected package libreadline5-dev. Unpacking libreadline5-dev (from .../libreadline5-dev_5.2-3build1_powerpc.deb) ... Selecting previously deselected package tcl8.4. Unpacking tcl8.4 (from .../tcl8.4_8.4.16-4ubuntu1_powerpc.deb) ... Selecting previously deselected package tk8.4. Unpacking tk8.4 (from .../tk8.4_8.4.16-2ubuntu1_powerpc.deb) ... Selecting previously deselected package unzip. Unpacking unzip (from .../unzip_5.52-10ubuntu2_powerpc.deb) ... Selecting previously deselected package zip. Unpacking zip (from .../zip_2.32-1_powerpc.deb) ... Selecting previously deselected package r-base-core. Unpacking r-base-core (from .../r-base-core_2.6.2-2_powerpc.deb) ... Selecting previously deselected package r-base-dev. Unpacking r-base-dev (from .../r-base-dev_2.6.2-2_all.deb) ... Setting up libx11-data (2:1.1.3-1ubuntu2) ... Setting up libxau6 (1:1.0.3-2) ... Setting up libxdmcp6 (1:1.0.2-2) ... Setting up libxcb1 (1.1-1ubuntu1) ... Setting up libxcb-xlib0 (1.1-1ubuntu1) ... Setting up libx11-6 (2:1.1.3-1ubuntu2) ... Setting up libice6 (2:1.0.4-1) ... Setting up libsm6 (2:1.0.3-1) ... Setting up libxt6 (1:1.0.5-3) ... Setting up gettext-base (0.17-2ubuntu1) ... Setting up net-tools (1.60-19ubuntu1) ... Setting up ifupdown (0.6.8ubuntu8) ... ifupdown.postinst: Warning: No 'iface lo' definition found in /etc/network/interfaces ifupdown.postinst: Warning: No 'auto lo' statement found in /etc/network/interfaces Setting up readline-common (5.2-3build1) ... Setting up libreadline5 (5.2-3build1) ... Setting up update-inetd (4.27-0.6) ... Setting up netbase (4.30ubuntu1) ... Setting up libmagic1 (4.21-3) ... Setting up file (4.21-3) ... Setting up libexpat1 (2.0.1-0ubuntu1) ... Setting up libhtml-tagset-perl (3.10-2) ... Setting up liburi-perl (1.35.dfsg.1-1) ... Setting up libhtml-parser-perl (3.56-1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.808-1) ... Setting up libxml-parser-perl (2.34-4.3) ... Setting up ucf (3.005) ... Setting up m4 (1.4.10-1) ... Setting up autoconf (2.61-4) ... Setting up autotools-dev (20070725.1) ... Setting up automake1.7 (1.7.9-9) ... Setting up html2text (1.3.2a-3build2) ... Setting up gettext (0.17-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.10) ... Setting up debhelper (6.0.4ubuntu1) ... Setting up fdupes (1.40-4build1) ... Setting up intltool (0.37.1-1ubuntu1) ... Setting up cdbs (0.4.51ubuntu1) ... Setting up dpatch (2.0.28) ... Setting up libgfortran2 (4.2.3-2ubuntu7) ... Setting up libgmp3c2 (2:4.2.2+dfsg-1ubuntu2) ... Setting up libmpfr1ldbl (2.3.1.dfsg.1-2ubuntu1) ... Setting up gfortran-4.2 (4.2.3-2ubuntu7) ... Setting up gfortran (4:4.2.3-1ubuntu3) ... Setting up libblas3gf (1.2-1.3ubuntu3) ... Setting up libblas-dev (1.2-1.3ubuntu3) ... Setting up libbz2-dev (1.0.4-2ubuntu4) ... Setting up libjpeg62 (6b-14) ... Setting up libjpeg62-dev (6b-14) ... Setting up libncurses5-dev (5.6+20071124-1ubuntu2) ... Setting up libpaper1 (1.1.23) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.23) ... Setting up libpcre3 (7.4-1ubuntu2) ... Setting up libpcrecpp0 (7.4-1ubuntu2) ... Setting up libpcre3-dev (7.4-1ubuntu2) ... Setting up libpng12-0 (1.2.15~beta5-3) ... Setting up zlib1g-dev (1:1.2.3.3.dfsg-7ubuntu1) ... Setting up libpng12-dev (1.2.15~beta5-3) ... Setting up libreadline5-dev (5.2-3build1) ... Setting up tcl8.4 (8.4.16-4ubuntu1) ... Setting up tk8.4 (8.4.16-2ubuntu1) ... Setting up unzip (5.52-10ubuntu2) ... Setting up zip (2.32-1) ... Setting up r-base-core (2.6.2-2) ... Setting R_PAPERSIZE_USER default to 'a4' Setting up r-base-dev (2.6.2-2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.7-10ubuntu3 make_3.81-3build1 dpkg-dev_1.14.16.6ubuntu3 gcc-4.2_4.2.3-2ubuntu7 g++-4.2_4.2.3-2ubuntu7 binutils_2.18.1~cvs20080103-0ubuntu1 libstdc++6_4.2.3-2ubuntu7 libstdc++6-4.2-dev_4.2.3-2ubuntu7 ------------------------------------------------------------------------------ dpkg-source: warning: could not verify signature on ./qtl_1.07-12-1build1.dsc since gpg isn't installed dpkg-source: extracting qtl in qtl-1.07-12 dpkg-source: unpacking qtl_1.07-12.orig.tar.gz dpkg-source: applying ./qtl_1.07-12-1build1.diff.gz dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: source package qtl dpkg-buildpackage: source version 1.07-12-1build1 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/qtl-1.07-12' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/qtl-1.07-12' dpatch deapply-all rm -rf debian/patched rm -f debian/stamp-patched debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/qtl-1.07-12' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/qtl-1.07-12' dpatch apply-all /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/buildd/qtl-1.07-12' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/buildd/qtl-1.07-12' touch debian/stamp-patched /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_clean -k dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library #if test -f /usr/bin/java; then \ # R CMD javareconf -e ''; \ #fi if test -f /usr/bin/xvfb-run; then \ xvfb-run \ R CMD INSTALL -l /build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/lib/R/site-library \ --clean . ;\ fi * Installing *source* package 'qtl' ... ** libs make[1]: Entering directory `/build/buildd/qtl-1.07-12/src' gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c discan.c -o discan.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c discan_covar.c -o discan_covar.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c effectscan.c -o effectscan.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c fitqtl_imp.c -o fitqtl_imp.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c forwsel.c -o forwsel.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c hmm_4way.c -o hmm_4way.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c hmm_bc.c -o hmm_bc.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c hmm_bci.c -o hmm_bci.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c hmm_cc.c -o hmm_cc.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c hmm_f2.c -o hmm_f2.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c hmm_f2i.c -o hmm_f2i.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c hmm_main.c -o hmm_main.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c info.c -o info.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c lapackutil.c -o lapackutil.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c ripple.c -o ripple.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scanone_ehk.c -o scanone_ehk.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scanone_em.c -o scanone_em.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scanone_em_covar.c -o scanone_em_covar.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scanone_hk.c -o scanone_hk.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scanone_imp.c -o scanone_imp.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scanone_mr.c -o scanone_mr.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scanone_np.c -o scanone_np.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scantwo_binary_em.c -o scantwo_binary_em.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scantwo_em.c -o scantwo_em.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scantwo_hk.c -o scantwo_hk.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scantwo_imp.c -o scantwo_imp.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c scantwo_mr.c -o scantwo_mr.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c simulate.c -o simulate.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c simulate_cc.c -o simulate_cc.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c stahl_mf.c -o stahl_mf.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c summary_scantwo.c -o summary_scantwo.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c util.c -o util.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -c vbscan.c -o vbscan.o gcc -std=gnu99 -shared -o qtl.so discan.o discan_covar.o effectscan.o fitqtl_imp.o forwsel.o hmm_4way.o hmm_bc.o hmm_bci.o hmm_cc.o hmm_f2.o hmm_f2i.o hmm_main.o info.o lapackutil.o ripple.o scanone_ehk.o scanone_em.o scanone_em_covar.o scanone_hk.o scanone_imp.o scanone_mr.o scanone_np.o scantwo_binary_em.o scantwo_em.o scantwo_hk.o scantwo_imp.o scantwo_mr.o simulate.o simulate_cc.o stahl_mf.o summary_scantwo.o util.o vbscan.o -L/usr/lib/R/lib -lRlapack -lblas -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR make[1]: Leaving directory `/build/buildd/qtl-1.07-12/src' make[1]: Entering directory `/build/buildd/qtl-1.07-12/src' make[1]: Leaving directory `/build/buildd/qtl-1.07-12/src' ** R ** data ** inst ** preparing package for lazy loading ** help Note: unmatched right brace in 'fitqtl' on or after line 9 >>> Building/Updating help pages for package 'qtl' Formats: text html latex example a.starting.point text html latex add.cim.covar text html latex example add.threshold text html latex example argmax.geno text html latex example arithscan text html latex example arithscanperm text html latex example badorder text html latex example bayesint text html latex example bristle3 text html latex example bristleX text html latex example c.cross text html latex example c.scanone text html latex example c.scanoneperm text html latex example c.scantwoperm text html latex example calc.errorlod text html latex example calc.genoprob text html latex example cbind.scanoneperm text html latex example checkAlleles text html latex example chrlen text html latex example cim text html latex example clean.cross text html latex example clean.scantwo text html latex example comparecrosses text html latex example comparegeno text html latex example condense.scantwo text html latex example convert.scanone text html latex example convert.scantwo text html latex example drop.markers text html latex example drop.nullmarkers text html latex example effectplot text html latex example effectscan text html latex example est.map text html latex example est.rf text html latex example fake.4way text html latex example fake.bc text html latex example fake.f2 text html latex example fill.geno text html latex example find.flanking text html latex example find.marker text html latex example find.markerpos text html latex example find.pheno text html latex example find.pseudomarker text html latex example fitqtl text html latex example fitstahl text html latex example geno.image text html latex example geno.table text html latex example hyper text html latex example jittermap text html latex example listeria text html latex example lodint text html latex example makeqtl text html latex example map10 text html latex example max.scanone text html latex example max.scantwo text html latex example movemarker text html latex example nmissing text html latex example plot.cross text html latex example plot.errorlod text html latex example plot.geno text html latex example pNote: unmatched right brace in 'summary.scanoneboot' on or after line 13 lot.info text html latex example plot.map text html latex example plot.missing text html latex example plot.pheno text html latex example plot.pxg text html latex example plot.rf text html latex example plot.scanone text html latex example plot.scantwo text html latex example pull.geno text html latex example pull.map text html latex example qtl-internal text html latex qtlversion text html latex example read.cross text html latex example replace.map text html latex example ripple text html latex example scanone text html latex example scanoneboot text html latex example scanqtl text html latex example scantwo text html latex example sim.cross text html latex example sim.geno text html latex example sim.map text html latex example strip.partials text html latex example subset.cross text html latex example subset.scanone text html latex example subset.scantwo text html latex example summary.cross text html latex example summary.fitqtl text html latex example summary.map text html latex example summary.qtl text html latex example summary.ripple text html latex example summary.scanone text html latex example summary.scanoneboot text html latex example summary.scanoneperm text html latex example summary.scantwo text html latex example summary.scantwo.old text html latex example summary.scantwoperm text html latex example switch.order text html latex example top.errorlod text html latex example write.cross text html latex example ** building package indices ... * DONE (qtl) rm -vf /build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/lib/R/site-library/R.css \ /build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/lib/R/site-library/qtl/COPYING \ /build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/lib/R/site-library/qtl/LICENSE.txt removed `/build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/lib/R/site-library/R.css' removed `/build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/lib/R/site-library/qtl/LICENSE.txt' if test -f debian/overrides; then \ install -d /build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /build/buildd/qtl-1.07-12/debian/r-cran-qtl/usr/share/lintian/overrides/r-cran-qtl; \ fi dh_installdirs -pr-cran-qtl dh_installdocs -pr-cran-qtl dh_installexamples -pr-cran-qtl dh_installman -pr-cran-qtl dh_installinfo -pr-cran-qtl dh_installmenu -pr-cran-qtl dh_installcron -pr-cran-qtl dh_installinit -pr-cran-qtl dh_installdebconf -pr-cran-qtl dh_installemacsen -pr-cran-qtl dh_installcatalogs -pr-cran-qtl dh_installpam -pr-cran-qtl dh_installlogrotate -pr-cran-qtl dh_installlogcheck -pr-cran-qtl dh_installmime -pr-cran-qtl dh_installchangelogs -pr-cran-qtl dh_installudev -pr-cran-qtl dh_install -pr-cran-qtl dh_link -pr-cran-qtl dh_strip -pr-cran-qtl dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: r-cran-qtl dh_strip debug symbol extraction: packages to act on: r-cran-qtl dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/r-cran-qtl-dbgsym/DEBIAN/control, package r-cran-qtl-dbgsym, directory ./debian/r-cran-qtl-dbgsym pkgstriptranslations: r-cran-qtl-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `/build/buildd/qtl-1.07-12/debian/r-cran-qtl-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `r-cran-qtl-dbgsym' in `../r-cran-qtl-dbgsym_1.07-12-1build1_powerpc.ddeb'. dh_compress -pr-cran-qtl dh_fixperms -pr-cran-qtl dh_makeshlibs -pr-cran-qtl dh_installdeb -pr-cran-qtl dh_perl -pr-cran-qtl dh_shlibdeps -pr-cran-qtl dpkg-shlibdeps: warning: debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so shouldn't be linked with libRlapack.so (it uses none of its symbols). dpkg-shlibdeps: warning: debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so shouldn't be linked with libgfortran.so.2 (it uses none of its symbols). dpkg-shlibdeps: warning: debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so shouldn't be linked with libgcc_s.so.1 (it uses none of its symbols). dpkg-shlibdeps: warning: debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so shouldn't be linked with libR.so (it uses none of its symbols). dh_gencontrol -pr-cran-qtl # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/r-cran-qtl/usr/share/doc ] || \ [ ! -d debian/r-cran-qtl/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/r-cran-qtl/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/r-cran-qtl/usr/share/doc/r-cran-qtl; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/r-cran-qtl/usr/share/doc/r-cran-qtl/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in r-cran-qtl to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/r-cran-qtl/usr/share/gnome/help ]; then \ cd debian/r-cran-qtl && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p r-cran-qtl dh_md5sums -pr-cran-qtl dh_builddeb -pr-cran-qtl pkgstriptranslations: processing control file: ./debian/r-cran-qtl/DEBIAN/control, package r-cran-qtl, directory ./debian/r-cran-qtl pkgstriptranslations: r-cran-qtl does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/r-cran-qtl/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `r-cran-qtl' in `../r-cran-qtl_1.07-12-1build1_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../qtl_1.07-12-1build1_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131125-1050 Publishing debug debs. chroot-autobuild/build/buildd/r-cran-qtl_1.07-12-1build1_powerpc.deb: new debian package, version 2.0. size 1185872 bytes: control archive= 13472 bytes. 1385 bytes, 27 lines control 35819 bytes, 444 lines md5sums 528 bytes, 24 lines * postinst #!/bin/sh 480 bytes, 25 lines * postrm #!/bin/sh Package: r-cran-qtl Source: qtl Version: 1.07-12-1build1 Architecture: powerpc Maintainer: Ubuntu MOTU Developers Original-Maintainer: Steffen Moeller Installed-Size: 3548 Depends: libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.7-1), libgcc1, libgfortran2 (>= 4.2.1), r-base-core (>= 2.5.1) Section: math Priority: optional Homepage: http://www.rqtl.org Description: GNU R package for genetic marker linkage analysis R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. It is implemented as an add-on-package for the freely available and widely used statistical language/software R (see http://www.r-project.org). The user will benefit from the seamless integration of the QTL mapping software into a general statistical analysis program. . The current version of R/qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). The fit of higher-order QTL models, with sophisticated techniques for model comparisons and model search, will be incorporated soon. chroot-autobuild/build/buildd/r-cran-qtl_1.07-12-1build1_powerpc.deb: drwxr-xr-x root/root 0 2013-11-25 10:50 ./ drwxr-xr-x root/root 0 2013-11-25 10:50 ./usr/ drwxr-xr-x root/root 0 2013-11-25 10:50 ./usr/lib/ drwxr-xr-x root/root 0 2013-11-25 10:50 ./usr/lib/R/ drwxr-xr-x root/root 0 2013-11-25 10:50 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2013-11-25 10:50 ./usr/lib/R/site-library/qtl/ drwxr-xr-x root/root 0 2013-11-25 10:50 ./usr/lib/R/site-library/qtl/html/ -rw-r--r-- root/root 2134 2013-11-25 10:50 ./usr/lib/R/site-library/qtl/html/subset.cross.html -rw-r--r-- root/root 2408 2013-11-25 10:50 ./usr/lib/R/site-library/qtl/html/bristleX.html -rw-r--r-- root/root 2696 2013-11-25 10:50 ./usr/lib/R/site-library/qtl/html/plot.missing.html -rw-r--r-- root/root 2521 2013-11-25 10:50 ./usr/lib/R/site-library/qtl/html/arithscanperm.html -rw-r--r-- 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Distribution: hardy Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Cesare Tirabassi Description: r-cran-qtl - GNU R package for genetic marker linkage analysis Launchpad-Bugs-Fixed: 219346 Changes: qtl (1.07-12-1build1) hardy; urgency=low . * Rebuild for the r-base transition (LP: #219346) Files: b40265ff6a0401f742693497136600e8 1185872 math optional r-cran-qtl_1.07-12-1build1_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131125-1050 Build needed 00:00:42, 7816k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-566019'] Scanning for processes to kill in build /srv/home/buildd/build-PACKAGEBUILD-566019/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-566019'] Unmounting chroot for build PACKAGEBUILD-566019... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-566019'] Removing build PACKAGEBUILD-566019